Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029287.t1 | XP_013470329.1 | 93.3 | 524 | 29 | 4 | 1 | 523 | 1 | 519 | 7.50E-269 | 936 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029287.t1 | Q9ZVX2 | 48.1 | 532 | 242 | 12 | 6 | 526 | 5 | 513 | 7.5e-108 | 392.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029287.t1 | A0A072VRJ5 | 93.3 | 524 | 29 | 4 | 1 | 523 | 1 | 519 | 5.4e-269 | 936.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene029287.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029287.t1 | MTR_1g112680 | 94.466 | 524 | 23 | 4 | 1 | 523 | 1 | 519 | 0.0 | 1009 |
MS.gene029287.t1 | MTR_8g064700 | 29.038 | 520 | 256 | 13 | 10 | 520 | 4 | 419 | 2.34e-60 | 205 |
MS.gene029287.t1 | MTR_3g498695 | 35.149 | 202 | 113 | 1 | 316 | 517 | 293 | 476 | 2.13e-34 | 135 |
MS.gene029287.t1 | MTR_3g498695 | 34.975 | 203 | 113 | 2 | 316 | 517 | 293 | 477 | 2.63e-33 | 132 |
MS.gene029287.t1 | MTR_7g083900 | 35.644 | 202 | 107 | 4 | 320 | 517 | 285 | 467 | 3.35e-30 | 123 |
MS.gene029287.t1 | MTR_7g083900 | 35.468 | 203 | 107 | 4 | 320 | 517 | 285 | 468 | 5.14e-30 | 123 |
MS.gene029287.t1 | MTR_3g030700 | 33.505 | 194 | 98 | 2 | 311 | 500 | 186 | 352 | 7.22e-25 | 106 |
MS.gene029287.t1 | MTR_2g081040 | 31.000 | 200 | 117 | 4 | 320 | 517 | 176 | 356 | 2.08e-23 | 102 |
MS.gene029287.t1 | MTR_3g104100 | 30.387 | 181 | 108 | 2 | 320 | 500 | 194 | 356 | 2.13e-21 | 96.7 |
MS.gene029287.t1 | MTR_2g038040 | 34.409 | 186 | 102 | 5 | 314 | 496 | 45 | 213 | 6.60e-21 | 92.4 |
MS.gene029287.t1 | MTR_4g091910 | 33.918 | 171 | 80 | 3 | 320 | 490 | 46 | 183 | 2.63e-20 | 89.7 |
MS.gene029287.t1 | MTR_4g091990 | 30.317 | 221 | 99 | 5 | 285 | 497 | 3 | 176 | 2.74e-20 | 89.4 |
MS.gene029287.t1 | MTR_2g084280 | 30.857 | 175 | 81 | 4 | 306 | 477 | 121 | 258 | 7.04e-18 | 85.1 |
MS.gene029287.t1 | MTR_4g057270 | 30.994 | 171 | 70 | 5 | 315 | 473 | 143 | 277 | 3.95e-17 | 83.2 |
MS.gene029287.t1 | MTR_3g111290 | 28.708 | 209 | 106 | 4 | 309 | 516 | 161 | 327 | 9.44e-16 | 79.0 |
MS.gene029287.t1 | MTR_5g030770 | 30.415 | 217 | 97 | 8 | 309 | 516 | 144 | 315 | 2.56e-15 | 77.4 |
MS.gene029287.t1 | MTR_5g030770 | 28.704 | 216 | 96 | 6 | 309 | 516 | 144 | 309 | 5.03e-15 | 76.6 |
MS.gene029287.t1 | MTR_8g098275 | 32.258 | 186 | 110 | 6 | 301 | 479 | 288 | 464 | 4.78e-14 | 75.1 |
MS.gene029287.t1 | MTR_8g098275 | 32.258 | 186 | 110 | 6 | 301 | 479 | 224 | 400 | 5.22e-14 | 74.7 |
MS.gene029287.t1 | MTR_5g014600 | 29.412 | 187 | 110 | 7 | 314 | 499 | 142 | 307 | 5.47e-14 | 73.6 |
MS.gene029287.t1 | MTR_8g024790 | 29.592 | 196 | 97 | 7 | 300 | 487 | 268 | 430 | 6.25e-14 | 74.3 |
MS.gene029287.t1 | MTR_1g072320 | 27.919 | 197 | 109 | 6 | 315 | 502 | 459 | 631 | 7.36e-14 | 74.7 |
MS.gene029287.t1 | MTR_8g098275 | 32.258 | 186 | 110 | 6 | 301 | 479 | 381 | 557 | 8.30e-14 | 74.3 |
MS.gene029287.t1 | MTR_7g096350 | 42.045 | 88 | 50 | 1 | 289 | 376 | 324 | 410 | 1.79e-13 | 73.2 |
MS.gene029287.t1 | MTR_5g030430 | 28.767 | 219 | 127 | 7 | 305 | 515 | 472 | 669 | 3.10e-13 | 72.8 |
MS.gene029287.t1 | MTR_8g027495 | 28.342 | 187 | 98 | 5 | 325 | 511 | 462 | 612 | 5.23e-13 | 72.0 |
MS.gene029287.t1 | MTR_0246s0020 | 25.862 | 174 | 104 | 4 | 313 | 485 | 190 | 339 | 6.77e-13 | 70.9 |
MS.gene029287.t1 | MTR_0246s0020 | 25.862 | 174 | 104 | 4 | 313 | 485 | 190 | 339 | 6.98e-13 | 70.5 |
MS.gene029287.t1 | MTR_0250s0040 | 28.492 | 179 | 100 | 5 | 307 | 485 | 74 | 224 | 1.01e-12 | 68.9 |
MS.gene029287.t1 | MTR_8g067280 | 31.325 | 166 | 89 | 5 | 325 | 486 | 466 | 610 | 1.15e-12 | 70.9 |
MS.gene029287.t1 | MTR_7g117670 | 55.556 | 54 | 24 | 0 | 325 | 378 | 406 | 459 | 2.94e-12 | 69.7 |
MS.gene029287.t1 | MTR_8g024770 | 40.260 | 77 | 44 | 1 | 300 | 374 | 256 | 332 | 8.37e-12 | 67.8 |
MS.gene029287.t1 | MTR_5g014560 | 31.884 | 138 | 79 | 3 | 240 | 376 | 63 | 186 | 1.17e-11 | 66.2 |
MS.gene029287.t1 | MTR_5g014640 | 33.000 | 100 | 60 | 1 | 293 | 385 | 119 | 218 | 1.47e-11 | 66.2 |
MS.gene029287.t1 | MTR_5g014520 | 42.222 | 90 | 47 | 3 | 308 | 397 | 145 | 229 | 2.26e-11 | 65.9 |
MS.gene029287.t1 | MTR_2g104550 | 26.977 | 215 | 123 | 6 | 276 | 485 | 90 | 275 | 3.13e-11 | 65.1 |
MS.gene029287.t1 | MTR_4g092700 | 49.091 | 55 | 28 | 0 | 322 | 376 | 159 | 213 | 3.96e-11 | 65.1 |
MS.gene029287.t1 | MTR_8g066770 | 28.161 | 174 | 105 | 5 | 322 | 492 | 116 | 272 | 4.09e-11 | 64.7 |
MS.gene029287.t1 | MTR_3g099620 | 25.751 | 233 | 134 | 7 | 309 | 520 | 96 | 310 | 5.22e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029287.t1 | AT2G16910 | 48.519 | 540 | 228 | 17 | 6 | 526 | 5 | 513 | 3.29e-148 | 437 |
MS.gene029287.t1 | AT3G26744 | 33.663 | 202 | 109 | 3 | 320 | 517 | 306 | 486 | 3.82e-30 | 124 |
MS.gene029287.t1 | AT3G26744 | 33.663 | 202 | 109 | 3 | 320 | 517 | 306 | 486 | 3.82e-30 | 124 |
MS.gene029287.t1 | AT3G26744 | 33.663 | 202 | 109 | 3 | 320 | 517 | 306 | 486 | 3.82e-30 | 124 |
MS.gene029287.t1 | AT3G26744 | 36.066 | 183 | 93 | 2 | 320 | 499 | 306 | 467 | 1.15e-29 | 122 |
MS.gene029287.t1 | AT1G12860 | 35.176 | 199 | 106 | 3 | 320 | 517 | 266 | 442 | 1.58e-29 | 121 |
MS.gene029287.t1 | AT1G12860 | 36.111 | 180 | 93 | 2 | 320 | 499 | 266 | 423 | 2.05e-28 | 117 |
MS.gene029287.t1 | AT1G10610 | 36.025 | 161 | 87 | 4 | 7 | 157 | 8 | 162 | 4.03e-25 | 108 |
MS.gene029287.t1 | AT1G10610 | 26.829 | 205 | 115 | 4 | 319 | 518 | 262 | 436 | 1.82e-16 | 82.4 |
MS.gene029287.t1 | AT5G57150 | 31.884 | 207 | 116 | 5 | 303 | 504 | 32 | 218 | 1.40e-19 | 88.6 |
MS.gene029287.t1 | AT5G57150 | 31.683 | 202 | 113 | 5 | 303 | 499 | 32 | 213 | 2.51e-19 | 87.4 |
MS.gene029287.t1 | AT5G57150 | 31.683 | 202 | 113 | 5 | 303 | 499 | 33 | 214 | 3.63e-19 | 86.7 |
MS.gene029287.t1 | AT5G57150 | 31.683 | 202 | 113 | 5 | 303 | 499 | 33 | 214 | 4.23e-19 | 86.7 |
MS.gene029287.t1 | AT5G57150 | 31.683 | 202 | 113 | 5 | 303 | 499 | 33 | 214 | 4.84e-19 | 87.4 |
MS.gene029287.t1 | AT2G28160 | 29.878 | 164 | 89 | 4 | 313 | 476 | 123 | 260 | 6.18e-17 | 82.4 |
MS.gene029287.t1 | AT2G28160 | 29.878 | 164 | 89 | 4 | 313 | 476 | 123 | 260 | 6.44e-17 | 82.4 |
MS.gene029287.t1 | AT5G46760 | 32.099 | 162 | 86 | 4 | 325 | 486 | 419 | 556 | 1.17e-16 | 83.6 |
MS.gene029287.t1 | AT1G10610 | 32.836 | 134 | 75 | 3 | 33 | 157 | 5 | 132 | 1.22e-16 | 82.4 |
MS.gene029287.t1 | AT1G10610 | 26.829 | 205 | 115 | 4 | 319 | 518 | 232 | 406 | 1.54e-16 | 82.4 |
MS.gene029287.t1 | AT1G10610 | 26.829 | 205 | 115 | 4 | 319 | 518 | 165 | 339 | 1.64e-16 | 81.6 |
MS.gene029287.t1 | AT4G21330 | 26.601 | 203 | 122 | 4 | 319 | 521 | 30 | 205 | 1.83e-16 | 78.6 |
MS.gene029287.t1 | AT1G63650 | 28.061 | 196 | 123 | 4 | 324 | 515 | 408 | 589 | 3.91e-16 | 82.0 |
MS.gene029287.t1 | AT1G63650 | 28.061 | 196 | 123 | 4 | 324 | 515 | 408 | 589 | 3.91e-16 | 82.0 |
MS.gene029287.t1 | AT1G63650 | 28.061 | 196 | 123 | 4 | 324 | 515 | 408 | 589 | 3.91e-16 | 82.0 |
MS.gene029287.t1 | AT4G29930 | 29.146 | 199 | 118 | 5 | 320 | 509 | 53 | 237 | 5.16e-16 | 78.6 |
MS.gene029287.t1 | AT2G46510 | 44.086 | 93 | 47 | 1 | 306 | 393 | 375 | 467 | 8.67e-16 | 80.9 |
MS.gene029287.t1 | AT5G65640 | 29.224 | 219 | 121 | 5 | 309 | 526 | 166 | 351 | 2.16e-15 | 78.2 |
MS.gene029287.t1 | AT5G10570 | 30.332 | 211 | 99 | 7 | 311 | 516 | 138 | 305 | 3.90e-15 | 77.0 |
MS.gene029287.t1 | AT5G65640 | 57.746 | 71 | 30 | 0 | 309 | 379 | 166 | 236 | 5.92e-15 | 75.9 |
MS.gene029287.t1 | AT4G29930 | 28.804 | 184 | 110 | 4 | 320 | 496 | 53 | 222 | 8.40e-15 | 75.1 |
MS.gene029287.t1 | AT4G29930 | 28.804 | 184 | 110 | 4 | 320 | 496 | 53 | 222 | 8.40e-15 | 75.1 |
MS.gene029287.t1 | AT4G17880 | 28.877 | 187 | 100 | 5 | 305 | 486 | 395 | 553 | 2.25e-14 | 76.3 |
MS.gene029287.t1 | AT4G37850 | 26.842 | 190 | 112 | 4 | 316 | 505 | 147 | 309 | 3.53e-14 | 74.3 |
MS.gene029287.t1 | AT4G37850 | 26.842 | 190 | 112 | 4 | 316 | 505 | 147 | 309 | 3.53e-14 | 74.3 |
MS.gene029287.t1 | AT4G29930 | 55.000 | 60 | 27 | 0 | 320 | 379 | 53 | 112 | 4.56e-14 | 71.2 |
MS.gene029287.t1 | AT4G29930 | 55.000 | 60 | 27 | 0 | 320 | 379 | 53 | 112 | 5.43e-14 | 72.0 |
MS.gene029287.t1 | AT4G29930 | 55.000 | 60 | 27 | 0 | 320 | 379 | 53 | 112 | 5.58e-14 | 72.0 |
MS.gene029287.t1 | AT4G29930 | 55.000 | 60 | 27 | 0 | 320 | 379 | 53 | 112 | 5.87e-14 | 72.0 |
MS.gene029287.t1 | AT5G41315 | 27.136 | 199 | 126 | 6 | 324 | 515 | 444 | 630 | 2.35e-13 | 73.2 |
MS.gene029287.t1 | AT5G41315 | 27.136 | 199 | 126 | 6 | 324 | 515 | 452 | 638 | 2.35e-13 | 73.2 |
MS.gene029287.t1 | AT5G41315 | 27.136 | 199 | 126 | 6 | 324 | 515 | 449 | 635 | 2.62e-13 | 73.2 |
MS.gene029287.t1 | AT4G09820 | 25.789 | 190 | 91 | 3 | 322 | 509 | 364 | 505 | 1.98e-12 | 70.1 |
MS.gene029287.t1 | AT1G01260 | 42.045 | 88 | 49 | 2 | 292 | 378 | 404 | 490 | 2.24e-12 | 70.1 |
MS.gene029287.t1 | AT1G01260 | 42.045 | 88 | 49 | 2 | 292 | 378 | 404 | 490 | 2.24e-12 | 70.1 |
MS.gene029287.t1 | AT1G01260 | 42.045 | 88 | 49 | 2 | 292 | 378 | 404 | 490 | 2.24e-12 | 70.1 |
MS.gene029287.t1 | AT3G24140 | 26.442 | 208 | 126 | 6 | 323 | 518 | 200 | 392 | 3.41e-12 | 68.9 |
MS.gene029287.t1 | AT3G24140 | 26.316 | 209 | 127 | 6 | 322 | 518 | 199 | 392 | 3.57e-12 | 68.6 |
MS.gene029287.t1 | AT4G16430 | 43.421 | 76 | 38 | 1 | 306 | 376 | 300 | 375 | 5.50e-12 | 68.6 |
MS.gene029287.t1 | AT1G32640 | 22.395 | 451 | 266 | 19 | 4 | 376 | 63 | 507 | 3.11e-11 | 66.6 |
MS.gene029287.t1 | AT2G22750 | 26.316 | 171 | 103 | 3 | 315 | 485 | 148 | 295 | 7.47e-11 | 64.3 |
MS.gene029287.t1 | AT4G00870 | 40.323 | 62 | 37 | 0 | 325 | 386 | 253 | 314 | 7.93e-11 | 64.7 |
MS.gene029287.t1 | AT2G22750 | 26.316 | 171 | 103 | 3 | 315 | 485 | 148 | 295 | 8.24e-11 | 63.9 |
MS.gene029287.t1 | AT2G22750 | 26.316 | 171 | 103 | 3 | 315 | 485 | 144 | 291 | 8.94e-11 | 63.9 |
MS.gene029287.t1 | AT3G06120 | 27.322 | 183 | 115 | 6 | 322 | 499 | 3 | 172 | 9.14e-11 | 62.0 |
Find 105 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACATTGTTATTATTATTATT+TGG | 0.194014 | 1.4:-86570209 | None:intergenic |
CTATCAAGCTTTGAGATTCT+TGG | 0.205780 | 1.4:-86570047 | None:intergenic |
CTCTTGTTGGTTTGAATGGC+TGG | 0.239275 | 1.4:+86568212 | MS.gene029287:CDS |
TGAAATCCATGTTCTGCTTT+TGG | 0.239465 | 1.4:-86570233 | None:intergenic |
CTTGATAGAGCATCTATTCT+TGG | 0.248227 | 1.4:+86570062 | MS.gene029287:CDS |
CAGCAACAAGGTTCTTTGAT+TGG | 0.308174 | 1.4:-86569968 | None:intergenic |
GTGGAAGTGGCTCAGATAGA+TGG | 0.338551 | 1.4:+86570476 | MS.gene029287:CDS |
GATGTTCTTCTCCACCATTT+TGG | 0.343592 | 1.4:-86568433 | None:intergenic |
GTTATATAACCTTCGTTCAT+TGG | 0.349149 | 1.4:+86570022 | MS.gene029287:CDS |
AGATCACAAGAGTTTGTTCT+TGG | 0.351468 | 1.4:-86568497 | None:intergenic |
GAACTTACATGTAAAGTGTT+TGG | 0.359394 | 1.4:-86568715 | None:intergenic |
GAAGGAAGAAACTGAATGAT+AGG | 0.368436 | 1.4:+86570000 | MS.gene029287:CDS |
CAAATCTTCATGCTGGAACT+TGG | 0.371640 | 1.4:+86570847 | MS.gene029287:CDS |
AGACCTCTTGTTGGTTTGAA+TGG | 0.376737 | 1.4:+86568208 | MS.gene029287:CDS |
GTGTTTGGATCCAAGCTATT+GGG | 0.381111 | 1.4:-86568700 | None:intergenic |
TAGGTATGGAAGTGGAAAGT+TGG | 0.382059 | 1.4:-86568526 | None:intergenic |
ATTGGGATAGTTCAACCAAT+TGG | 0.386734 | 1.4:-86568683 | None:intergenic |
ATGCAATCAAATCCAATTGT+AGG | 0.393492 | 1.4:+86569546 | MS.gene029287:CDS |
GATTCCAGTGCCTGGTGGAC+TGG | 0.406904 | 1.4:+86568874 | MS.gene029287:CDS |
CAGAACATGGATTTCATGTT+GGG | 0.411727 | 1.4:+86570240 | MS.gene029287:CDS |
TTTATATACCCTGAATCTAT+AGG | 0.413784 | 1.4:-86568545 | None:intergenic |
TGAGCTCTTTGTAACTAAAC+AGG | 0.419409 | 1.4:+86568898 | MS.gene029287:CDS |
GGTTGGGATGTTGTTGTGGT+GGG | 0.420257 | 1.4:+86568399 | MS.gene029287:CDS |
AAGAGGATGATGGAAAATAT+AGG | 0.425274 | 1.4:+86569925 | MS.gene029287:CDS |
AGTGTTTGGATCCAAGCTAT+TGG | 0.426318 | 1.4:-86568701 | None:intergenic |
ACTTCCATACCTATAGATTC+AGG | 0.426419 | 1.4:+86568536 | MS.gene029287:CDS |
TTTCCCTGTCTCTTCATGTA+GGG | 0.439137 | 1.4:+86568457 | MS.gene029287:CDS |
TTGGGATAGTTCAACCAATT+GGG | 0.440118 | 1.4:-86568682 | None:intergenic |
TATTAACTAACCAACCCAAT+TGG | 0.442270 | 1.4:+86568668 | MS.gene029287:CDS |
TATAGGAGAAGAAGTGGAAA+AGG | 0.445604 | 1.4:+86569942 | MS.gene029287:CDS |
AGGTATGGAAGTGGAAAGTT+GGG | 0.445933 | 1.4:-86568525 | None:intergenic |
GAGAGATTAAGACCTCTTGT+TGG | 0.450531 | 1.4:+86568199 | MS.gene029287:CDS |
GAAGGGATGAACCACTCAAT+TGG | 0.450600 | 1.4:+86569504 | MS.gene029287:CDS |
ATGGAGGCTTTGAACACTTT+AGG | 0.460171 | 1.4:+86570557 | MS.gene029287:CDS |
AGTAACTGTGTATATGTTGA+TGG | 0.466614 | 1.4:+86570173 | MS.gene029287:CDS |
ATCATGCACCTCTTCTGTGT+TGG | 0.467913 | 1.4:-86569778 | None:intergenic |
GCAGAACATGGATTTCATGT+TGG | 0.469960 | 1.4:+86570239 | MS.gene029287:CDS |
TGGTTGGGATGTTGTTGTGG+TGG | 0.472495 | 1.4:+86568398 | MS.gene029287:CDS |
GGAAAATATAGGAGAAGAAG+TGG | 0.472548 | 1.4:+86569936 | MS.gene029287:CDS |
GATCACAAGAGTTTGTTCTT+GGG | 0.473126 | 1.4:-86568496 | None:intergenic |
TCTTGTTGGTTTGAATGGCT+GGG | 0.473478 | 1.4:+86568213 | MS.gene029287:CDS |
GATTCAATGTCTCTGATGAA+TGG | 0.473958 | 1.4:-86569605 | None:intergenic |
AAGAAGCAAGAACATGTTGT+TGG | 0.475916 | 1.4:+86569861 | MS.gene029287:CDS |
GCTGGGATTACTGTGTCTAC+TGG | 0.476054 | 1.4:+86568230 | MS.gene029287:CDS |
GGCTTTGAACACTTTAGGCA+TGG | 0.486692 | 1.4:+86570562 | MS.gene029287:CDS |
ATGAATATTGCAGGCACAAG+TGG | 0.489997 | 1.4:+86570457 | MS.gene029287:intron |
TTATATATAGGTATCTAGAA+TGG | 0.490580 | 1.4:+86568378 | MS.gene029287:intron |
GTTGAACTATCCCAATAGCT+TGG | 0.501147 | 1.4:+86568690 | MS.gene029287:CDS |
TAACAATCAATATATGTTTG+TGG | 0.501838 | 1.4:+86569821 | MS.gene029287:CDS |
CAGAATGAAGAAGAGGATGA+TGG | 0.501916 | 1.4:+86569915 | MS.gene029287:CDS |
ATTGAACAGGATTCATGCAC+AGG | 0.504490 | 1.4:+86568642 | MS.gene029287:intron |
TTCTCTTCCTCTCAGCAACA+AGG | 0.506548 | 1.4:-86569980 | None:intergenic |
ATATAGGTATCTAGAATGGT+TGG | 0.508602 | 1.4:+86568382 | MS.gene029287:intron |
GTATCCCTACATGAAGAGAC+AGG | 0.511754 | 1.4:-86568461 | None:intergenic |
ATACCCTGAATCTATAGGTA+TGG | 0.513797 | 1.4:-86568540 | None:intergenic |
GGGAGTGAAAGCAACCAAAA+TGG | 0.520448 | 1.4:+86568419 | MS.gene029287:CDS |
TATAGGTATCTAGAATGGTT+GGG | 0.521100 | 1.4:+86568383 | MS.gene029287:intron |
TGGAAGTGGCTCAGATAGAT+GGG | 0.522256 | 1.4:+86570477 | MS.gene029287:CDS |
TGAGACAAGACCCTTGTGAC+TGG | 0.522381 | 1.4:-86570606 | None:intergenic |
CATGGATTTCATGTTGGGAA+TGG | 0.525371 | 1.4:+86570245 | MS.gene029287:CDS |
ATTGCAGGCACAAGTGGAAG+TGG | 0.525672 | 1.4:+86570463 | MS.gene029287:intron |
ACCTTGGTATTCTGCAGAGA+AGG | 0.528009 | 1.4:-86569715 | None:intergenic |
TGAATCTATAGGTATGGAAG+TGG | 0.528440 | 1.4:-86568534 | None:intergenic |
CACGGAACAAATCTTCATGC+TGG | 0.531543 | 1.4:+86570840 | MS.gene029287:CDS |
CTTCCATACCTATAGATTCA+GGG | 0.537250 | 1.4:+86568537 | MS.gene029287:CDS |
CTATGTTTCAAAACAAAAGC+AGG | 0.545019 | 1.4:+86570268 | MS.gene029287:CDS |
GGAAATTAAGTGAAGATCAA+AGG | 0.546606 | 1.4:+86568251 | MS.gene029287:CDS |
ATCAATTTCACAAAACCACC+TGG | 0.550671 | 1.4:-86570536 | None:intergenic |
GATAGTTCAACCAATTGGGT+TGG | 0.554141 | 1.4:-86568678 | None:intergenic |
GAATGGTTGGGATGTTGTTG+TGG | 0.554900 | 1.4:+86568395 | MS.gene029287:CDS |
CAGGCACTGGAATCAAAACA+TGG | 0.559119 | 1.4:-86568865 | None:intergenic |
CAGTGATCAGAATGAAGAAG+AGG | 0.559858 | 1.4:+86569908 | MS.gene029287:CDS |
TGACATGAACAATTTCATCA+TGG | 0.560237 | 1.4:+86568165 | None:intergenic |
TTGTTGCTGAGAGGAAGAGA+AGG | 0.562094 | 1.4:+86569982 | MS.gene029287:CDS |
ATTGTAGGTGATGAAAATGA+TGG | 0.563751 | 1.4:+86569561 | MS.gene029287:CDS |
AAGAGCTCAACCAGTCCACC+AGG | 0.565516 | 1.4:-86568884 | None:intergenic |
GATCATGAAGAAAAGAACCT+TGG | 0.576590 | 1.4:-86569731 | None:intergenic |
TCAACCAGTCCACCAGGCAC+TGG | 0.579883 | 1.4:-86568878 | None:intergenic |
AAACAAAAGCAGGAAGATGT+TGG | 0.583119 | 1.4:+86570278 | MS.gene029287:CDS |
ATCTCAATGCATTGTCATGG+TGG | 0.583356 | 1.4:+86569476 | MS.gene029287:CDS |
TGACAAGCAGACACAGCAGA+TGG | 0.586592 | 1.4:+86570310 | MS.gene029287:CDS |
AAAGGAGAGTGAAATAGTTG+AGG | 0.586665 | 1.4:+86570784 | MS.gene029287:CDS |
CACATCTCAATGCATTGTCA+TGG | 0.588350 | 1.4:+86569473 | MS.gene029287:CDS |
TTGAATTGAAGCCAATTGAG+TGG | 0.597436 | 1.4:-86569515 | None:intergenic |
TTCAATACAGATATGTCATG+TGG | 0.598259 | 1.4:-86569630 | None:intergenic |
AGAGCTTCAAGATGAACTTG+AGG | 0.601650 | 1.4:+86570127 | MS.gene029287:CDS |
AATGTTCCAAAAGCAGAACA+TGG | 0.606756 | 1.4:+86570227 | MS.gene029287:CDS |
TCTCAAATCCAACACAGAAG+AGG | 0.606938 | 1.4:+86569770 | MS.gene029287:CDS |
CAAAGAACCTTGTTGCTGAG+AGG | 0.619036 | 1.4:+86569973 | MS.gene029287:CDS |
CTTGAGGAAAATTCAGACAC+AGG | 0.625559 | 1.4:+86570143 | MS.gene029287:CDS |
TGCCACAGTAACCAGTCACA+AGG | 0.625627 | 1.4:+86570595 | MS.gene029287:CDS |
AGATGCTATTGAATTTGTGA+AGG | 0.628469 | 1.4:+86570085 | MS.gene029287:CDS |
CAGCCATTCAAACCAACAAG+AGG | 0.632565 | 1.4:-86568211 | None:intergenic |
AGTGAAAGCAACCAAAATGG+TGG | 0.646392 | 1.4:+86568422 | MS.gene029287:CDS |
ATTCACTACTAGAGCTGACA+CGG | 0.647595 | 1.4:+86570822 | MS.gene029287:CDS |
TTCTTGGAACCAATGAACGA+AGG | 0.654816 | 1.4:-86570031 | None:intergenic |
ACCCTTGTGACTGGTTACTG+TGG | 0.657104 | 1.4:-86570597 | None:intergenic |
ATTGTCATGGTGGATCATGA+AGG | 0.663490 | 1.4:+86569486 | MS.gene029287:CDS |
TTGTCATGGTGGATCATGAA+GGG | 0.669599 | 1.4:+86569487 | MS.gene029287:CDS |
TGGGAATGAGTACTTTGTGA+AGG | 0.678653 | 1.4:+86570496 | MS.gene029287:CDS |
ACCTTCTCTGCAGAATACCA+AGG | 0.678716 | 1.4:+86569714 | MS.gene029287:CDS |
CAAGCAGACACAGCAGATGG+AGG | 0.682677 | 1.4:+86570313 | MS.gene029287:CDS |
TATCCCTACATGAAGAGACA+GGG | 0.687876 | 1.4:-86568460 | None:intergenic |
GCCACAGTAACCAGTCACAA+GGG | 0.696830 | 1.4:+86570596 | MS.gene029287:CDS |
AGGCACTGGAATCAAAACAT+GGG | 0.706180 | 1.4:-86568864 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATATATATATATATAAA+TGG | + | chr1.4:86568999-86569018 | MS.gene029287:intron | 0.0% |
!! | AGTTATTAGTATATTTATTT+AGG | - | chr1.4:86569397-86569416 | None:intergenic | 10.0% |
!! | ATATAATAGAACAAAAAATA+TGG | - | chr1.4:86568310-86568329 | None:intergenic | 10.0% |
!!! | ACATTGTTATTATTATTATT+TGG | - | chr1.4:86570212-86570231 | None:intergenic | 10.0% |
!! | AATATTATAGATAGAGTAAA+GGG | - | chr1.4:86568606-86568625 | None:intergenic | 15.0% |
!! | AATTTATACACTAATAACAA+AGG | + | chr1.4:86570361-86570380 | MS.gene029287:intron | 15.0% |
!! | ATATAATTATGAACAGAAAA+AGG | + | chr1.4:86570766-86570785 | MS.gene029287:intron | 15.0% |
!! | ATGATATTAAATTTCTTTCT+TGG | + | chr1.4:86570734-86570753 | MS.gene029287:intron | 15.0% |
!! | CATAATAAAAATATGAAGTT+CGG | + | chr1.4:86569268-86569287 | MS.gene029287:intron | 15.0% |
!! | TGATATTAAATTTCTTTCTT+GGG | + | chr1.4:86570735-86570754 | MS.gene029287:intron | 15.0% |
!!! | ATTTGTTGGTTTTTATATAT+AGG | + | chr1.4:86568366-86568385 | MS.gene029287:intron | 15.0% |
!!! | TATAAATTTTAGTATAAGCT+AGG | - | chr1.4:86570349-86570368 | None:intergenic | 15.0% |
!! | AATTCATAAGTTAACAAACA+AGG | - | chr1.4:86570672-86570691 | None:intergenic | 20.0% |
!! | AGACAAATTCAAATCAAAAT+AGG | + | chr1.4:86570701-86570720 | MS.gene029287:intron | 20.0% |
!! | AGATGAAATAGTTGAAAAAT+AGG | - | chr1.4:86568756-86568775 | None:intergenic | 20.0% |
!! | GAATATTATAGATAGAGTAA+AGG | - | chr1.4:86568607-86568626 | None:intergenic | 20.0% |
!! | GTACTCAATATATCAATATA+TGG | - | chr1.4:86568817-86568836 | None:intergenic | 20.0% |
!! | TAACAATCAATATATGTTTG+TGG | + | chr1.4:86569821-86569840 | MS.gene029287:CDS | 20.0% |
!! | TCATTGAACGATATATTATA+AGG | + | chr1.4:86569081-86569100 | MS.gene029287:intron | 20.0% |
!! | TTATATATAGGTATCTAGAA+TGG | + | chr1.4:86568378-86568397 | MS.gene029287:intron | 20.0% |
!!! | CTTTTTTGAATTATCAAGTA+AGG | + | chr1.4:86569235-86569254 | MS.gene029287:intron | 20.0% |
!!! | TAAGATCATGTTAATTTTGA+TGG | + | chr1.4:86569179-86569198 | MS.gene029287:intron | 20.0% |
!!! | TAATTGTGATGTTAATTTGT+TGG | + | chr1.4:86568352-86568371 | MS.gene029287:intron | 20.0% |
!!! | TTTTTCAACTATTTCATCTT+TGG | + | chr1.4:86568757-86568776 | MS.gene029287:intron | 20.0% |
! | CTCTTTGTGTATAATATAAC+AGG | + | chr1.4:86569419-86569438 | MS.gene029287:intron | 25.0% |
! | GCTTAATTTACATATTGAAC+TGG | + | chr1.4:86569021-86569040 | MS.gene029287:intron | 25.0% |
! | GGTCTAATTATGATATTGAA+GGG | - | chr1.4:86569116-86569135 | None:intergenic | 25.0% |
! | TATATGGAATTAGCTGAAAA+AGG | - | chr1.4:86568801-86568820 | None:intergenic | 25.0% |
! | TTGTGTATAATATAACAGGT+TGG | + | chr1.4:86569423-86569442 | MS.gene029287:intron | 25.0% |
! | TTTATATACCCTGAATCTAT+AGG | - | chr1.4:86568548-86568567 | None:intergenic | 25.0% |
!! | GAATTATCAAGTAAGGTTTT+TGG | + | chr1.4:86569242-86569261 | MS.gene029287:intron | 25.0% |
!! | TTTTGCAGGAAACAATTAAT+GGG | + | chr1.4:86568840-86568859 | MS.gene029287:intron | 25.0% |
!! | TTTTTGCAGGAAACAATTAA+TGG | + | chr1.4:86568839-86568858 | MS.gene029287:intron | 25.0% |
!!! | ATATTGAGTACTATTTTTGC+AGG | + | chr1.4:86568826-86568845 | MS.gene029287:intron | 25.0% |
!!! | CTCAAATGTTTTTAAAGTTG+AGG | + | chr1.4:86570625-86570644 | MS.gene029287:CDS | 25.0% |
AGATGCTATTGAATTTGTGA+AGG | + | chr1.4:86570085-86570104 | MS.gene029287:CDS | 30.0% | |
AGTAACTGTGTATATGTTGA+TGG | + | chr1.4:86570173-86570192 | MS.gene029287:CDS | 30.0% | |
ATGCAATCAAATCCAATTGT+AGG | + | chr1.4:86569546-86569565 | MS.gene029287:CDS | 30.0% | |
ATTATAGATAGAGTAAAGGG+AGG | - | chr1.4:86568603-86568622 | None:intergenic | 30.0% | |
ATTGTAGGTGATGAAAATGA+TGG | + | chr1.4:86569561-86569580 | MS.gene029287:CDS | 30.0% | |
CACATGAATATGAATATTGC+AGG | + | chr1.4:86570448-86570467 | MS.gene029287:intron | 30.0% | |
CACTTTACATGTAAGTTCAT+TGG | + | chr1.4:86568720-86568739 | MS.gene029287:intron | 30.0% | |
CTATGTTTCAAAACAAAAGC+AGG | + | chr1.4:86570268-86570287 | MS.gene029287:CDS | 30.0% | |
CTGTTCAATGAAGAGATTAA+AGG | - | chr1.4:86568631-86568650 | None:intergenic | 30.0% | |
CTTTAATCTCTTCATTGAAC+AGG | + | chr1.4:86568629-86568648 | MS.gene029287:intron | 30.0% | |
GATCTTGATGTTGTTAACAA+GGG | - | chr1.4:86569137-86569156 | None:intergenic | 30.0% | |
GGAAATTAAGTGAAGATCAA+AGG | + | chr1.4:86568251-86568270 | MS.gene029287:CDS | 30.0% | |
GGGTCTAATTATGATATTGA+AGG | - | chr1.4:86569117-86569136 | None:intergenic | 30.0% | |
GTTATATAACCTTCGTTCAT+TGG | + | chr1.4:86570022-86570041 | MS.gene029287:CDS | 30.0% | |
TATTAACTAACCAACCCAAT+TGG | + | chr1.4:86568668-86568687 | MS.gene029287:CDS | 30.0% | |
TGATCTTGATGTTGTTAACA+AGG | - | chr1.4:86569138-86569157 | None:intergenic | 30.0% | |
TTATAGATAGAGTAAAGGGA+GGG | - | chr1.4:86568602-86568621 | None:intergenic | 30.0% | |
TTCAATACAGATATGTCATG+TGG | - | chr1.4:86569633-86569652 | None:intergenic | 30.0% | |
TTTAGGCAAAATTGCATCAA+AGG | - | chr1.4:86569380-86569399 | None:intergenic | 30.0% | |
! | ATATAGGTATCTAGAATGGT+TGG | + | chr1.4:86568382-86568401 | MS.gene029287:intron | 30.0% |
! | GAACTTACATGTAAAGTGTT+TGG | - | chr1.4:86568718-86568737 | None:intergenic | 30.0% |
! | TATAGGTATCTAGAATGGTT+GGG | + | chr1.4:86568383-86568402 | MS.gene029287:intron | 30.0% |
! | TCATTTTCATCACCTACAAT+TGG | - | chr1.4:86569561-86569580 | None:intergenic | 30.0% |
!! | AAGAGGATGATGGAAAATAT+AGG | + | chr1.4:86569925-86569944 | MS.gene029287:CDS | 30.0% |
!!! | GCTTCTTTTTTGTGTCTAAT+GGG | - | chr1.4:86569848-86569867 | None:intergenic | 30.0% |
!!! | TGCTTCTTTTTTGTGTCTAA+TGG | - | chr1.4:86569849-86569868 | None:intergenic | 30.0% |
AAACAAAAGCAGGAAGATGT+TGG | + | chr1.4:86570278-86570297 | MS.gene029287:CDS | 35.0% | |
AAAGGAGAGTGAAATAGTTG+AGG | + | chr1.4:86570784-86570803 | MS.gene029287:CDS | 35.0% | |
AAGAAGCAAGAACATGTTGT+TGG | + | chr1.4:86569861-86569880 | MS.gene029287:CDS | 35.0% | |
AATGTTCCAAAAGCAGAACA+TGG | + | chr1.4:86570227-86570246 | MS.gene029287:CDS | 35.0% | |
ACTTCCATACCTATAGATTC+AGG | + | chr1.4:86568536-86568555 | MS.gene029287:CDS | 35.0% | |
ATACCCTGAATCTATAGGTA+TGG | - | chr1.4:86568543-86568562 | None:intergenic | 35.0% | |
ATCAATTTCACAAAACCACC+TGG | - | chr1.4:86570539-86570558 | None:intergenic | 35.0% | |
ATTGGGATAGTTCAACCAAT+TGG | - | chr1.4:86568686-86568705 | None:intergenic | 35.0% | |
CAGAACATGGATTTCATGTT+GGG | + | chr1.4:86570240-86570259 | MS.gene029287:CDS | 35.0% | |
CTTCCATACCTATAGATTCA+GGG | + | chr1.4:86568537-86568556 | MS.gene029287:CDS | 35.0% | |
GAAGGAAGAAACTGAATGAT+AGG | + | chr1.4:86570000-86570019 | MS.gene029287:CDS | 35.0% | |
GATCATGAAGAAAAGAACCT+TGG | - | chr1.4:86569734-86569753 | None:intergenic | 35.0% | |
GATTCAATGTCTCTGATGAA+TGG | - | chr1.4:86569608-86569627 | None:intergenic | 35.0% | |
GGAAAATATAGGAGAAGAAG+TGG | + | chr1.4:86569936-86569955 | MS.gene029287:CDS | 35.0% | |
TATACAAGCGTCAAAGATGT+TGG | - | chr1.4:86569295-86569314 | None:intergenic | 35.0% | |
TATAGGAGAAGAAGTGGAAA+AGG | + | chr1.4:86569942-86569961 | MS.gene029287:CDS | 35.0% | |
TGAATCTATAGGTATGGAAG+TGG | - | chr1.4:86568537-86568556 | None:intergenic | 35.0% | |
TGAGCTCTTTGTAACTAAAC+AGG | + | chr1.4:86568898-86568917 | MS.gene029287:CDS | 35.0% | |
TTGAATTGAAGCCAATTGAG+TGG | - | chr1.4:86569518-86569537 | None:intergenic | 35.0% | |
TTGGGATAGTTCAACCAATT+GGG | - | chr1.4:86568685-86568704 | None:intergenic | 35.0% | |
! | AGATCACAAGAGTTTGTTCT+TGG | - | chr1.4:86568500-86568519 | None:intergenic | 35.0% |
! | CTTGATAGAGCATCTATTCT+TGG | + | chr1.4:86570062-86570081 | MS.gene029287:CDS | 35.0% |
! | GATCACAAGAGTTTGTTCTT+GGG | - | chr1.4:86568499-86568518 | None:intergenic | 35.0% |
! | TGAAATCCATGTTCTGCTTT+TGG | - | chr1.4:86570236-86570255 | None:intergenic | 35.0% |
!! | CTATCAAGCTTTGAGATTCT+TGG | - | chr1.4:86570050-86570069 | None:intergenic | 35.0% |
!!! | AGGTGGTTTTGTGAAATTGA+TGG | + | chr1.4:86570538-86570557 | MS.gene029287:CDS | 35.0% |
!!! | TGGTTTTGTGAAATTGATGG+AGG | + | chr1.4:86570541-86570560 | MS.gene029287:CDS | 35.0% |
AGAGCTTCAAGATGAACTTG+AGG | + | chr1.4:86570127-86570146 | MS.gene029287:CDS | 40.0% | |
AGGTATGGAAGTGGAAAGTT+GGG | - | chr1.4:86568528-86568547 | None:intergenic | 40.0% | |
AGTGAAAGCAACCAAAATGG+TGG | + | chr1.4:86568422-86568441 | MS.gene029287:CDS | 40.0% | |
AGTGTTTGGATCCAAGCTAT+TGG | - | chr1.4:86568704-86568723 | None:intergenic | 40.0% | |
ATCTCAATGCATTGTCATGG+TGG | + | chr1.4:86569476-86569495 | MS.gene029287:CDS | 40.0% | |
ATGAATATTGCAGGCACAAG+TGG | + | chr1.4:86570457-86570476 | MS.gene029287:intron | 40.0% | |
ATTCACTACTAGAGCTGACA+CGG | + | chr1.4:86570822-86570841 | MS.gene029287:CDS | 40.0% | |
ATTGAACAGGATTCATGCAC+AGG | + | chr1.4:86568642-86568661 | MS.gene029287:intron | 40.0% | |
CAAATCTTCATGCTGGAACT+TGG | + | chr1.4:86570847-86570866 | MS.gene029287:CDS | 40.0% | |
CACATCTCAATGCATTGTCA+TGG | + | chr1.4:86569473-86569492 | MS.gene029287:CDS | 40.0% | |
CAGAATGAAGAAGAGGATGA+TGG | + | chr1.4:86569915-86569934 | MS.gene029287:CDS | 40.0% | |
CAGCAACAAGGTTCTTTGAT+TGG | - | chr1.4:86569971-86569990 | None:intergenic | 40.0% | |
CAGTGATCAGAATGAAGAAG+AGG | + | chr1.4:86569908-86569927 | MS.gene029287:CDS | 40.0% | |
CATGGATTTCATGTTGGGAA+TGG | + | chr1.4:86570245-86570264 | MS.gene029287:CDS | 40.0% | |
CTTGAGGAAAATTCAGACAC+AGG | + | chr1.4:86570143-86570162 | MS.gene029287:CDS | 40.0% | |
GAGAGATTAAGACCTCTTGT+TGG | + | chr1.4:86568199-86568218 | MS.gene029287:CDS | 40.0% | |
GATAGTTCAACCAATTGGGT+TGG | - | chr1.4:86568681-86568700 | None:intergenic | 40.0% | |
GCAGAACATGGATTTCATGT+TGG | + | chr1.4:86570239-86570258 | MS.gene029287:CDS | 40.0% | |
GTGTTTGGATCCAAGCTATT+GGG | - | chr1.4:86568703-86568722 | None:intergenic | 40.0% | |
GTTGAACTATCCCAATAGCT+TGG | + | chr1.4:86568690-86568709 | MS.gene029287:CDS | 40.0% | |
TAGGTATGGAAGTGGAAAGT+TGG | - | chr1.4:86568529-86568548 | None:intergenic | 40.0% | |
TATCCCTACATGAAGAGACA+GGG | - | chr1.4:86568463-86568482 | None:intergenic | 40.0% | |
TCTCAAATCCAACACAGAAG+AGG | + | chr1.4:86569770-86569789 | MS.gene029287:CDS | 40.0% | |
TGGGAATGAGTACTTTGTGA+AGG | + | chr1.4:86570496-86570515 | MS.gene029287:CDS | 40.0% | |
TTCTTGGAACCAATGAACGA+AGG | - | chr1.4:86570034-86570053 | None:intergenic | 40.0% | |
TTTCCCTGTCTCTTCATGTA+GGG | + | chr1.4:86568457-86568476 | MS.gene029287:CDS | 40.0% | |
! | GATGTTCTTCTCCACCATTT+TGG | - | chr1.4:86568436-86568455 | None:intergenic | 40.0% |
! | TTTTCCCTGTCTCTTCATGT+AGG | + | chr1.4:86568456-86568475 | MS.gene029287:CDS | 40.0% |
!! | AGACCTCTTGTTGGTTTGAA+TGG | + | chr1.4:86568208-86568227 | MS.gene029287:CDS | 40.0% |
!! | AGGCACTGGAATCAAAACAT+GGG | - | chr1.4:86568867-86568886 | None:intergenic | 40.0% |
!! | ATGGAGGCTTTGAACACTTT+AGG | + | chr1.4:86570557-86570576 | MS.gene029287:CDS | 40.0% |
!! | ATTGTCATGGTGGATCATGA+AGG | + | chr1.4:86569486-86569505 | MS.gene029287:CDS | 40.0% |
!! | TCTTGTTGGTTTGAATGGCT+GGG | + | chr1.4:86568213-86568232 | MS.gene029287:CDS | 40.0% |
!! | TTGTCATGGTGGATCATGAA+GGG | + | chr1.4:86569487-86569506 | MS.gene029287:CDS | 40.0% |
ACCTTCTCTGCAGAATACCA+AGG | + | chr1.4:86569714-86569733 | MS.gene029287:CDS | 45.0% | |
ACCTTGGTATTCTGCAGAGA+AGG | - | chr1.4:86569718-86569737 | None:intergenic | 45.0% | |
ATCATGCACCTCTTCTGTGT+TGG | - | chr1.4:86569781-86569800 | None:intergenic | 45.0% | |
CAAAGAACCTTGTTGCTGAG+AGG | + | chr1.4:86569973-86569992 | MS.gene029287:CDS | 45.0% | |
CACGGAACAAATCTTCATGC+TGG | + | chr1.4:86570840-86570859 | MS.gene029287:CDS | 45.0% | |
CAGCCATTCAAACCAACAAG+AGG | - | chr1.4:86568214-86568233 | None:intergenic | 45.0% | |
GAAGGGATGAACCACTCAAT+TGG | + | chr1.4:86569504-86569523 | MS.gene029287:CDS | 45.0% | |
GAATGGTTGGGATGTTGTTG+TGG | + | chr1.4:86568395-86568414 | MS.gene029287:CDS | 45.0% | |
GGGAGTGAAAGCAACCAAAA+TGG | + | chr1.4:86568419-86568438 | MS.gene029287:CDS | 45.0% | |
GTATCCCTACATGAAGAGAC+AGG | - | chr1.4:86568464-86568483 | None:intergenic | 45.0% | |
TGGAAGTGGCTCAGATAGAT+GGG | + | chr1.4:86570477-86570496 | MS.gene029287:CDS | 45.0% | |
TTCTCTTCCTCTCAGCAACA+AGG | - | chr1.4:86569983-86570002 | None:intergenic | 45.0% | |
TTGTTGCTGAGAGGAAGAGA+AGG | + | chr1.4:86569982-86570001 | MS.gene029287:CDS | 45.0% | |
!! | CAGGCACTGGAATCAAAACA+TGG | - | chr1.4:86568868-86568887 | None:intergenic | 45.0% |
!! | CTCTTGTTGGTTTGAATGGC+TGG | + | chr1.4:86568212-86568231 | MS.gene029287:CDS | 45.0% |
!! | GGCTTTGAACACTTTAGGCA+TGG | + | chr1.4:86570562-86570581 | MS.gene029287:CDS | 45.0% |
!!! | CATGTTTTGATTCCAGTGCC+TGG | + | chr1.4:86568866-86568885 | MS.gene029287:CDS | 45.0% |
ATTGCAGGCACAAGTGGAAG+TGG | + | chr1.4:86570463-86570482 | MS.gene029287:intron | 50.0% | |
GCCACAGTAACCAGTCACAA+GGG | + | chr1.4:86570596-86570615 | MS.gene029287:CDS | 50.0% | |
GCTGGGATTACTGTGTCTAC+TGG | + | chr1.4:86568230-86568249 | MS.gene029287:CDS | 50.0% | |
GGTTGGGATGTTGTTGTGGT+GGG | + | chr1.4:86568399-86568418 | MS.gene029287:CDS | 50.0% | |
GTGGAAGTGGCTCAGATAGA+TGG | + | chr1.4:86570476-86570495 | MS.gene029287:CDS | 50.0% | |
TGACAAGCAGACACAGCAGA+TGG | + | chr1.4:86570310-86570329 | MS.gene029287:CDS | 50.0% | |
TGAGACAAGACCCTTGTGAC+TGG | - | chr1.4:86570609-86570628 | None:intergenic | 50.0% | |
TGCCACAGTAACCAGTCACA+AGG | + | chr1.4:86570595-86570614 | MS.gene029287:CDS | 50.0% | |
TGGTTGGGATGTTGTTGTGG+TGG | + | chr1.4:86568398-86568417 | MS.gene029287:CDS | 50.0% | |
! | ACCCTTGTGACTGGTTACTG+TGG | - | chr1.4:86570600-86570619 | None:intergenic | 50.0% |
! | GTGTTTTGTGAGCACAAGCC+AGG | + | chr1.4:86570518-86570537 | MS.gene029287:CDS | 50.0% |
! | TTTTGTGAGCACAAGCCAGG+TGG | + | chr1.4:86570521-86570540 | MS.gene029287:CDS | 50.0% |
!!! | GTTTTGATTCCAGTGCCTGG+TGG | + | chr1.4:86568869-86568888 | MS.gene029287:CDS | 50.0% |
AAGAGCTCAACCAGTCCACC+AGG | - | chr1.4:86568887-86568906 | None:intergenic | 55.0% | |
CAAGCAGACACAGCAGATGG+AGG | + | chr1.4:86570313-86570332 | MS.gene029287:CDS | 55.0% | |
TCAACCAGTCCACCAGGCAC+TGG | - | chr1.4:86568881-86568900 | None:intergenic | 60.0% | |
! | GATTCCAGTGCCTGGTGGAC+TGG | + | chr1.4:86568874-86568893 | MS.gene029287:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 86568169 | 86570877 | 86568169 | ID=MS.gene029287 |
chr1.4 | mRNA | 86568169 | 86570877 | 86568169 | ID=MS.gene029287.t1;Parent=MS.gene029287 |
chr1.4 | exon | 86568169 | 86568272 | 86568169 | ID=MS.gene029287.t1.exon1;Parent=MS.gene029287.t1 |
chr1.4 | CDS | 86568169 | 86568272 | 86568169 | ID=cds.MS.gene029287.t1;Parent=MS.gene029287.t1 |
chr1.4 | exon | 86568388 | 86568558 | 86568388 | ID=MS.gene029287.t1.exon2;Parent=MS.gene029287.t1 |
chr1.4 | CDS | 86568388 | 86568558 | 86568388 | ID=cds.MS.gene029287.t1;Parent=MS.gene029287.t1 |
chr1.4 | exon | 86568651 | 86568729 | 86568651 | ID=MS.gene029287.t1.exon3;Parent=MS.gene029287.t1 |
chr1.4 | CDS | 86568651 | 86568729 | 86568651 | ID=cds.MS.gene029287.t1;Parent=MS.gene029287.t1 |
chr1.4 | exon | 86568848 | 86568919 | 86568848 | ID=MS.gene029287.t1.exon4;Parent=MS.gene029287.t1 |
chr1.4 | CDS | 86568848 | 86568919 | 86568848 | ID=cds.MS.gene029287.t1;Parent=MS.gene029287.t1 |
chr1.4 | exon | 86569441 | 86570334 | 86569441 | ID=MS.gene029287.t1.exon5;Parent=MS.gene029287.t1 |
chr1.4 | CDS | 86569441 | 86570334 | 86569441 | ID=cds.MS.gene029287.t1;Parent=MS.gene029287.t1 |
chr1.4 | exon | 86570470 | 86570646 | 86570470 | ID=MS.gene029287.t1.exon6;Parent=MS.gene029287.t1 |
chr1.4 | CDS | 86570470 | 86570646 | 86570470 | ID=cds.MS.gene029287.t1;Parent=MS.gene029287.t1 |
chr1.4 | exon | 86570782 | 86570877 | 86570782 | ID=MS.gene029287.t1.exon7;Parent=MS.gene029287.t1 |
chr1.4 | CDS | 86570782 | 86570877 | 86570782 | ID=cds.MS.gene029287.t1;Parent=MS.gene029287.t1 |
Gene Sequence |
Protein sequence |