Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029289.t1 | XP_013470325.1 | 87.7 | 324 | 26 | 5 | 1 | 318 | 1 | 316 | 1.40E-145 | 525.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029289.t1 | Q8VZ20 | 42.1 | 321 | 148 | 8 | 16 | 318 | 14 | 314 | 3.2e-53 | 210.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029289.t1 | A0A072VSJ7 | 87.7 | 324 | 26 | 5 | 1 | 318 | 1 | 316 | 1.0e-145 | 525.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene029289.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029289.t1 | MTR_1g112650 | 87.654 | 324 | 26 | 5 | 1 | 318 | 1 | 316 | 0.0 | 512 |
| MS.gene029289.t1 | MTR_7g020870 | 70.317 | 347 | 68 | 7 | 1 | 318 | 1 | 341 | 8.17e-152 | 429 |
| MS.gene029289.t1 | MTR_7g020870 | 68.400 | 250 | 52 | 5 | 1 | 229 | 1 | 244 | 7.16e-102 | 299 |
| MS.gene029289.t1 | MTR_8g100130 | 34.627 | 335 | 160 | 9 | 32 | 318 | 38 | 361 | 3.70e-48 | 165 |
| MS.gene029289.t1 | MTR_1g094045 | 29.605 | 152 | 67 | 5 | 43 | 154 | 56 | 207 | 3.24e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029289.t1 | AT2G33550 | 45.732 | 328 | 126 | 12 | 16 | 318 | 14 | 314 | 1.82e-75 | 234 |
| MS.gene029289.t1 | AT4G31270 | 31.250 | 112 | 71 | 2 | 43 | 154 | 19 | 124 | 2.87e-13 | 69.7 |
| MS.gene029289.t1 | AT2G35640 | 32.824 | 131 | 71 | 5 | 43 | 160 | 22 | 148 | 1.03e-11 | 65.5 |
Find 92 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTCCGTCATCGGAATT+AGG | 0.129660 | 1.4:-86539876 | None:intergenic |
| CCAACTGTAATCTCTTGTTC+TGG | 0.278506 | 1.4:-86540685 | None:intergenic |
| CAATTCCGTCATCGGAATTA+GGG | 0.284671 | 1.4:-86539875 | None:intergenic |
| GTGGACGAGGCAGGAGATTC+TGG | 0.309093 | 1.4:+86539968 | MS.gene029289:CDS |
| TTCATATTTATGATAGTAAT+AGG | 0.313951 | 1.4:+86540369 | MS.gene029289:CDS |
| TTGCAGTTTGATTCTGTTGC+TGG | 0.313975 | 1.4:-86540712 | None:intergenic |
| GGTCGAAACGGTTCGTTGTT+TGG | 0.317436 | 1.4:+86540035 | MS.gene029289:CDS |
| TCCGATGACGGAATTGATAA+TGG | 0.339364 | 1.4:+86539882 | MS.gene029289:CDS |
| TCTTTCTCCTTCTAGATTTG+AGG | 0.339729 | 1.4:-86540552 | None:intergenic |
| GAATCAAACTGCAAGTAATA+TGG | 0.352089 | 1.4:+86540721 | MS.gene029289:CDS |
| GGTGGCTGCAACGGCTGTTC+CGG | 0.353509 | 1.4:+86540301 | MS.gene029289:CDS |
| CGCAGATTACAAGAAGATTA+AGG | 0.365457 | 1.4:+86540157 | MS.gene029289:CDS |
| GATTAAGGAGTGGGAGTCTC+AGG | 0.378865 | 1.4:+86540172 | MS.gene029289:CDS |
| CACATCTTCGCCATCATTCA+CGG | 0.396485 | 1.4:-86539922 | None:intergenic |
| GTGATGAAAGGGAGTCGTTT+TGG | 0.402620 | 1.4:+86540198 | MS.gene029289:CDS |
| GATAAGCTTGCAAATGCTCT+TGG | 0.406542 | 1.4:+86540755 | MS.gene029289:CDS |
| CAACTGTAATCTCTTGTTCT+GGG | 0.411973 | 1.4:-86540684 | None:intergenic |
| CTCGAGCATTGCCTTCTCCT+TGG | 0.418681 | 1.4:-86540505 | None:intergenic |
| CGTTTCGACCTGGTTTCAAC+CGG | 0.422688 | 1.4:-86540022 | None:intergenic |
| TGCTTCTCTGAGACTGAGAT+TGG | 0.427099 | 1.4:-86540458 | None:intergenic |
| TCCGGTGGCTGTGGCTGCAC+CGG | 0.437897 | 1.4:+86540319 | MS.gene029289:CDS |
| CAACAAGCCTCAAATCTAGA+AGG | 0.443939 | 1.4:+86540545 | MS.gene029289:CDS |
| TCACCAACCACCTCTGAAAC+CGG | 0.447629 | 1.4:-86540338 | None:intergenic |
| CGATTCAGTGTAAGAAGCGA+TGG | 0.458477 | 1.4:+86540123 | MS.gene029289:CDS |
| ATAAGCTTGCAAATGCTCTT+GGG | 0.460039 | 1.4:+86540756 | MS.gene029289:CDS |
| TCTGAGACTGAGATTGGAAC+GGG | 0.470242 | 1.4:-86540452 | None:intergenic |
| TCCATTATCAATTCCGTCAT+CGG | 0.473675 | 1.4:-86539883 | None:intergenic |
| TCTTACACTGAATCGGTGTC+CGG | 0.476690 | 1.4:-86540115 | None:intergenic |
| CATCGCTTCTTACACTGAAT+CGG | 0.477582 | 1.4:-86540122 | None:intergenic |
| CCACTCCTCAGTGGCTTCCA+AGG | 0.481478 | 1.4:+86540488 | MS.gene029289:CDS |
| AACGGCTGTTCCGGTGGCTG+TGG | 0.485143 | 1.4:+86540310 | MS.gene029289:CDS |
| CCGTCATCCGCCGTGAATGA+TGG | 0.495613 | 1.4:+86539912 | MS.gene029289:CDS |
| GGCGAAGATGTGAAACCAAC+GGG | 0.499148 | 1.4:+86539933 | MS.gene029289:CDS |
| CACCGTTGTAACCTTCCCGT+TGG | 0.499564 | 1.4:-86539948 | None:intergenic |
| GAGATTCTGGTGCTAGTACA+TGG | 0.500266 | 1.4:+86539981 | MS.gene029289:CDS |
| ACCGGTGCAGCCACAGCCAC+CGG | 0.509504 | 1.4:-86540320 | None:intergenic |
| GTTACAACGGTGGACGAGGC+AGG | 0.511770 | 1.4:+86539959 | MS.gene029289:CDS |
| TTCAGAGGTGGTTGGTGATG+AGG | 0.515224 | 1.4:+86540343 | MS.gene029289:CDS |
| GTCTCAGGTGAGTGATGAAA+GGG | 0.520228 | 1.4:+86540187 | MS.gene029289:CDS |
| GGCTGCAACGGCTGTTCCGG+TGG | 0.520416 | 1.4:+86540304 | MS.gene029289:CDS |
| CTCAGTGGCTTCCAAGGAGA+AGG | 0.523796 | 1.4:+86540494 | MS.gene029289:CDS |
| GGTTAGAACGTAACGAGGGT+TGG | 0.525104 | 1.4:-86539854 | None:intergenic |
| AACAACGAACCGTTTCGACC+TGG | 0.525473 | 1.4:-86540032 | None:intergenic |
| ACGTTGAGTTGAGGAGAGAG+AGG | 0.528535 | 1.4:+86540228 | MS.gene029289:CDS |
| GTGAGAAACATGGTGTGAAC+CGG | 0.529962 | 1.4:+86540096 | MS.gene029289:CDS |
| CCATCATTCACGGCGGATGA+CGG | 0.532480 | 1.4:-86539912 | None:intergenic |
| AGAGGTGGTTGGTGATGAGG+AGG | 0.536029 | 1.4:+86540346 | MS.gene029289:CDS |
| AGGAGAGAGAGGAAATTGCC+TGG | 0.537062 | 1.4:+86540239 | MS.gene029289:CDS |
| TGATTCAGCGGTGGCTGCAA+CGG | 0.542719 | 1.4:+86540292 | MS.gene029289:CDS |
| GCACCGGTTTCAGAGGTGGT+TGG | 0.543134 | 1.4:+86540335 | MS.gene029289:CDS |
| AAGGAGAAAGAAAGAGGAAG+CGG | 0.544131 | 1.4:+86540564 | MS.gene029289:CDS |
| ATCTAGAAGGAGAAAGAAAG+AGG | 0.547355 | 1.4:+86540558 | MS.gene029289:CDS |
| TTGGTTCGTTTGAGAAGAAG+TGG | 0.552340 | 1.4:+86540054 | MS.gene029289:CDS |
| AGTCTCAGGTGAGTGATGAA+AGG | 0.552467 | 1.4:+86540186 | MS.gene029289:CDS |
| TATTTATGATAGTAATAGGA+AGG | 0.553774 | 1.4:+86540373 | MS.gene029289:CDS |
| CGGTTGAAACCAGGTCGAAA+CGG | 0.555133 | 1.4:+86540023 | MS.gene029289:CDS |
| CTTCTCCTTGGAAGCCACTG+AGG | 0.555485 | 1.4:-86540493 | None:intergenic |
| GAAAGAACGATGCTGAAAGC+CGG | 0.556340 | 1.4:+86540003 | MS.gene029289:CDS |
| TTACAAGAAGATTAAGGAGT+GGG | 0.557499 | 1.4:+86540163 | MS.gene029289:CDS |
| CTCTGAGACTGAGATTGGAA+CGG | 0.559843 | 1.4:-86540453 | None:intergenic |
| AGGAAGCGGTTTGCAACAGA+AGG | 0.571454 | 1.4:+86540578 | MS.gene029289:CDS |
| GCTGAAAGCCGGTTGAAACC+AGG | 0.575628 | 1.4:+86540014 | MS.gene029289:CDS |
| GATTCAGTGTAAGAAGCGAT+GGG | 0.580190 | 1.4:+86540124 | MS.gene029289:CDS |
| GAAGGTTACAACGGTGGACG+AGG | 0.580650 | 1.4:+86539955 | MS.gene029289:CDS |
| GGCTGCACCGGTTTCAGAGG+TGG | 0.581806 | 1.4:+86540331 | MS.gene029289:CDS |
| CCTTGGAAGCCACTGAGGAG+TGG | 0.583205 | 1.4:-86540488 | None:intergenic |
| TGTGGCTGCACCGGTTTCAG+AGG | 0.592183 | 1.4:+86540328 | MS.gene029289:CDS |
| CTTAATCTTCTTGTAATCTG+CGG | 0.598671 | 1.4:-86540156 | None:intergenic |
| TTATAATATTCTTGATTCAG+CGG | 0.602422 | 1.4:+86540280 | MS.gene029289:CDS |
| CCAGAACAAGAGATTACAGT+TGG | 0.612831 | 1.4:+86540685 | MS.gene029289:CDS |
| GATGCTATGTGAACAGCTAG+AGG | 0.617201 | 1.4:+86540661 | MS.gene029289:CDS |
| CAGTGTGTTCCACTCCTCAG+TGG | 0.621372 | 1.4:+86540479 | MS.gene029289:CDS |
| TCTTCGTACTGTGAGAAACA+TGG | 0.622882 | 1.4:+86540086 | MS.gene029289:CDS |
| AACAGAAGGCAATGAAGAGG+AGG | 0.623007 | 1.4:+86540592 | MS.gene029289:CDS |
| TGGCGAAGATGTGAAACCAA+CGG | 0.623950 | 1.4:+86539932 | MS.gene029289:CDS |
| TCTAACCCTAATTCCGATGA+CGG | 0.628696 | 1.4:+86539870 | MS.gene029289:CDS |
| GGATGATGAACGTTGAGTTG+AGG | 0.628749 | 1.4:+86540219 | MS.gene029289:CDS |
| GTTTGAGAAGAAGTGGACGT+TGG | 0.629824 | 1.4:+86540061 | MS.gene029289:CDS |
| TAATATTCTTGATTCAGCGG+TGG | 0.634646 | 1.4:+86540283 | MS.gene029289:CDS |
| TGCAACAGAAGGCAATGAAG+AGG | 0.638315 | 1.4:+86540589 | MS.gene029289:CDS |
| ATTACAAGAAGATTAAGGAG+TGG | 0.640078 | 1.4:+86540162 | MS.gene029289:CDS |
| CAAGGAGAAGGCAATGCTCG+AGG | 0.643488 | 1.4:+86540506 | MS.gene029289:CDS |
| TCATTCACGGCGGATGACGG+TGG | 0.658142 | 1.4:-86539909 | None:intergenic |
| ACCTCCCAATCAAAACAACC+AGG | 0.662249 | 1.4:-86540257 | None:intergenic |
| GATAGTAATAGGAAGGTGAG+TGG | 0.668870 | 1.4:+86540380 | MS.gene029289:CDS |
| ATTAGGGTTAGAACGTAACG+AGG | 0.673798 | 1.4:-86539859 | None:intergenic |
| AAGATGTGAAACCAACGGGA+AGG | 0.680756 | 1.4:+86539937 | MS.gene029289:CDS |
| CAACGGGAAGGTTACAACGG+TGG | 0.690383 | 1.4:+86539949 | MS.gene029289:CDS |
| AACCAACGGGAAGGTTACAA+CGG | 0.725397 | 1.4:+86539946 | MS.gene029289:CDS |
| ATTCAGTGTAAGAAGCGATG+GGG | 0.726554 | 1.4:+86540125 | MS.gene029289:CDS |
| TTAGGGTTAGAACGTAACGA+GGG | 0.750121 | 1.4:-86539858 | None:intergenic |
| ATCTTCGCCATCATTCACGG+CGG | 0.776820 | 1.4:-86539919 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATATTTATGATAGTAAT+AGG | + | chr1.4:86540369-86540388 | MS.gene029289:CDS | 15.0% |
| !! | TATTTATGATAGTAATAGGA+AGG | + | chr1.4:86540373-86540392 | MS.gene029289:CDS | 20.0% |
| !! | TTATAATATTCTTGATTCAG+CGG | + | chr1.4:86540280-86540299 | MS.gene029289:CDS | 20.0% |
| !! | ATTGAAGTGTTAGAGAAAAA+TGG | + | chr1.4:86540635-86540654 | MS.gene029289:CDS | 25.0% |
| ATTACAAGAAGATTAAGGAG+TGG | + | chr1.4:86540162-86540181 | MS.gene029289:CDS | 30.0% | |
| CTTAATCTTCTTGTAATCTG+CGG | - | chr1.4:86540159-86540178 | None:intergenic | 30.0% | |
| GAATCAAACTGCAAGTAATA+TGG | + | chr1.4:86540721-86540740 | MS.gene029289:CDS | 30.0% | |
| TTACAAGAAGATTAAGGAGT+GGG | + | chr1.4:86540163-86540182 | MS.gene029289:CDS | 30.0% | |
| !! | AGATGAGTTGTTTTCTGATA+CGG | + | chr1.4:86540406-86540425 | MS.gene029289:CDS | 30.0% |
| ATAAGCTTGCAAATGCTCTT+GGG | + | chr1.4:86540756-86540775 | MS.gene029289:CDS | 35.0% | |
| ATCTAGAAGGAGAAAGAAAG+AGG | + | chr1.4:86540558-86540577 | MS.gene029289:CDS | 35.0% | |
| CAACTGTAATCTCTTGTTCT+GGG | - | chr1.4:86540687-86540706 | None:intergenic | 35.0% | |
| CGCAGATTACAAGAAGATTA+AGG | + | chr1.4:86540157-86540176 | MS.gene029289:CDS | 35.0% | |
| TAATATTCTTGATTCAGCGG+TGG | + | chr1.4:86540283-86540302 | MS.gene029289:CDS | 35.0% | |
| TCCATTATCAATTCCGTCAT+CGG | - | chr1.4:86539886-86539905 | None:intergenic | 35.0% | |
| TCTTTCTCCTTCTAGATTTG+AGG | - | chr1.4:86540555-86540574 | None:intergenic | 35.0% | |
| !!! | AATTGCCTGGTTGTTTTGAT+TGG | + | chr1.4:86540252-86540271 | MS.gene029289:CDS | 35.0% |
| !!! | ATTGCCTGGTTGTTTTGATT+GGG | + | chr1.4:86540253-86540272 | MS.gene029289:CDS | 35.0% |
| AAGGAGAAAGAAAGAGGAAG+CGG | + | chr1.4:86540564-86540583 | MS.gene029289:CDS | 40.0% | |
| ATTAGGGTTAGAACGTAACG+AGG | - | chr1.4:86539862-86539881 | None:intergenic | 40.0% | |
| ATTCAGTGTAAGAAGCGATG+GGG | + | chr1.4:86540125-86540144 | MS.gene029289:CDS | 40.0% | |
| CAACAAGCCTCAAATCTAGA+AGG | + | chr1.4:86540545-86540564 | MS.gene029289:CDS | 40.0% | |
| CAATTCCGTCATCGGAATTA+GGG | - | chr1.4:86539878-86539897 | None:intergenic | 40.0% | |
| CATCGCTTCTTACACTGAAT+CGG | - | chr1.4:86540125-86540144 | None:intergenic | 40.0% | |
| CCAACTGTAATCTCTTGTTC+TGG | - | chr1.4:86540688-86540707 | None:intergenic | 40.0% | |
| CCAGAACAAGAGATTACAGT+TGG | + | chr1.4:86540685-86540704 | MS.gene029289:CDS | 40.0% | |
| GATAAGCTTGCAAATGCTCT+TGG | + | chr1.4:86540755-86540774 | MS.gene029289:CDS | 40.0% | |
| GATAGTAATAGGAAGGTGAG+TGG | + | chr1.4:86540380-86540399 | MS.gene029289:CDS | 40.0% | |
| GATTCAGTGTAAGAAGCGAT+GGG | + | chr1.4:86540124-86540143 | MS.gene029289:CDS | 40.0% | |
| TCAATTCCGTCATCGGAATT+AGG | - | chr1.4:86539879-86539898 | None:intergenic | 40.0% | |
| TCTAACCCTAATTCCGATGA+CGG | + | chr1.4:86539870-86539889 | MS.gene029289:CDS | 40.0% | |
| TCTTCGTACTGTGAGAAACA+TGG | + | chr1.4:86540086-86540105 | MS.gene029289:CDS | 40.0% | |
| TTAGGGTTAGAACGTAACGA+GGG | - | chr1.4:86539861-86539880 | None:intergenic | 40.0% | |
| TTGCAGTTTGATTCTGTTGC+TGG | - | chr1.4:86540715-86540734 | None:intergenic | 40.0% | |
| ! | TTGGTTCGTTTGAGAAGAAG+TGG | + | chr1.4:86540054-86540073 | MS.gene029289:CDS | 40.0% |
| !! | GTTGTTTTCTGATACGGAGA+AGG | + | chr1.4:86540412-86540431 | MS.gene029289:CDS | 40.0% |
| !! | TCCGATGACGGAATTGATAA+TGG | + | chr1.4:86539882-86539901 | MS.gene029289:CDS | 40.0% |
| AACAGAAGGCAATGAAGAGG+AGG | + | chr1.4:86540592-86540611 | MS.gene029289:CDS | 45.0% | |
| AACCAACGGGAAGGTTACAA+CGG | + | chr1.4:86539946-86539965 | MS.gene029289:CDS | 45.0% | |
| AAGATGTGAAACCAACGGGA+AGG | + | chr1.4:86539937-86539956 | MS.gene029289:CDS | 45.0% | |
| ACCTCCCAATCAAAACAACC+AGG | - | chr1.4:86540260-86540279 | None:intergenic | 45.0% | |
| AGTCTCAGGTGAGTGATGAA+AGG | + | chr1.4:86540186-86540205 | MS.gene029289:CDS | 45.0% | |
| CACATCTTCGCCATCATTCA+CGG | - | chr1.4:86539925-86539944 | None:intergenic | 45.0% | |
| CGATTCAGTGTAAGAAGCGA+TGG | + | chr1.4:86540123-86540142 | MS.gene029289:CDS | 45.0% | |
| GAAAGAACGATGCTGAAAGC+CGG | + | chr1.4:86540003-86540022 | MS.gene029289:CDS | 45.0% | |
| GATGCTATGTGAACAGCTAG+AGG | + | chr1.4:86540661-86540680 | MS.gene029289:CDS | 45.0% | |
| GTCTCAGGTGAGTGATGAAA+GGG | + | chr1.4:86540187-86540206 | MS.gene029289:CDS | 45.0% | |
| GTGAGAAACATGGTGTGAAC+CGG | + | chr1.4:86540096-86540115 | MS.gene029289:CDS | 45.0% | |
| GTTTGAGAAGAAGTGGACGT+TGG | + | chr1.4:86540061-86540080 | MS.gene029289:CDS | 45.0% | |
| TGCAACAGAAGGCAATGAAG+AGG | + | chr1.4:86540589-86540608 | MS.gene029289:CDS | 45.0% | |
| TGGCGAAGATGTGAAACCAA+CGG | + | chr1.4:86539932-86539951 | MS.gene029289:CDS | 45.0% | |
| ! | GAGATTCTGGTGCTAGTACA+TGG | + | chr1.4:86539981-86540000 | MS.gene029289:CDS | 45.0% |
| ! | GGATGATGAACGTTGAGTTG+AGG | + | chr1.4:86540219-86540238 | MS.gene029289:CDS | 45.0% |
| ! | GTGATGAAAGGGAGTCGTTT+TGG | + | chr1.4:86540198-86540217 | MS.gene029289:CDS | 45.0% |
| ! | TCTGAGACTGAGATTGGAAC+GGG | - | chr1.4:86540455-86540474 | None:intergenic | 45.0% |
| ! | TCTTACACTGAATCGGTGTC+CGG | - | chr1.4:86540118-86540137 | None:intergenic | 45.0% |
| !! | CTCTGAGACTGAGATTGGAA+CGG | - | chr1.4:86540456-86540475 | None:intergenic | 45.0% |
| !! | TGCTTCTCTGAGACTGAGAT+TGG | - | chr1.4:86540461-86540480 | None:intergenic | 45.0% |
| AACAACGAACCGTTTCGACC+TGG | - | chr1.4:86540035-86540054 | None:intergenic | 50.0% | |
| AGGAAGCGGTTTGCAACAGA+AGG | + | chr1.4:86540578-86540597 | MS.gene029289:CDS | 50.0% | |
| AGGAGAGAGAGGAAATTGCC+TGG | + | chr1.4:86540239-86540258 | MS.gene029289:CDS | 50.0% | |
| ATCTTCGCCATCATTCACGG+CGG | - | chr1.4:86539922-86539941 | None:intergenic | 50.0% | |
| CGGTTGAAACCAGGTCGAAA+CGG | + | chr1.4:86540023-86540042 | MS.gene029289:CDS | 50.0% | |
| CGTTTCGACCTGGTTTCAAC+CGG | - | chr1.4:86540025-86540044 | None:intergenic | 50.0% | |
| GATTAAGGAGTGGGAGTCTC+AGG | + | chr1.4:86540172-86540191 | MS.gene029289:CDS | 50.0% | |
| GGCGAAGATGTGAAACCAAC+GGG | + | chr1.4:86539933-86539952 | MS.gene029289:CDS | 50.0% | |
| GGTCGAAACGGTTCGTTGTT+TGG | + | chr1.4:86540035-86540054 | MS.gene029289:CDS | 50.0% | |
| GGTTAGAACGTAACGAGGGT+TGG | - | chr1.4:86539857-86539876 | None:intergenic | 50.0% | |
| !! | ACGTTGAGTTGAGGAGAGAG+AGG | + | chr1.4:86540228-86540247 | MS.gene029289:CDS | 50.0% |
| !! | TCACCAACCACCTCTGAAAC+CGG | - | chr1.4:86540341-86540360 | None:intergenic | 50.0% |
| !! | TTCAGAGGTGGTTGGTGATG+AGG | + | chr1.4:86540343-86540362 | MS.gene029289:CDS | 50.0% |
| !!! | GCCTGGTTGTTTTGATTGGG+AGG | + | chr1.4:86540256-86540275 | MS.gene029289:CDS | 50.0% |
| CAACGGGAAGGTTACAACGG+TGG | + | chr1.4:86539949-86539968 | MS.gene029289:CDS | 55.0% | |
| CAAGGAGAAGGCAATGCTCG+AGG | + | chr1.4:86540506-86540525 | MS.gene029289:CDS | 55.0% | |
| CACCGTTGTAACCTTCCCGT+TGG | - | chr1.4:86539951-86539970 | None:intergenic | 55.0% | |
| CAGTGTGTTCCACTCCTCAG+TGG | + | chr1.4:86540479-86540498 | MS.gene029289:CDS | 55.0% | |
| CCATCATTCACGGCGGATGA+CGG | - | chr1.4:86539915-86539934 | None:intergenic | 55.0% | |
| CTCAGTGGCTTCCAAGGAGA+AGG | + | chr1.4:86540494-86540513 | MS.gene029289:CDS | 55.0% | |
| CTTCTCCTTGGAAGCCACTG+AGG | - | chr1.4:86540496-86540515 | None:intergenic | 55.0% | |
| GAAGGTTACAACGGTGGACG+AGG | + | chr1.4:86539955-86539974 | MS.gene029289:CDS | 55.0% | |
| GCTGAAAGCCGGTTGAAACC+AGG | + | chr1.4:86540014-86540033 | MS.gene029289:CDS | 55.0% | |
| TGATTCAGCGGTGGCTGCAA+CGG | + | chr1.4:86540292-86540311 | MS.gene029289:CDS | 55.0% | |
| ! | CTCGAGCATTGCCTTCTCCT+TGG | - | chr1.4:86540508-86540527 | None:intergenic | 55.0% |
| !! | AGAGGTGGTTGGTGATGAGG+AGG | + | chr1.4:86540346-86540365 | MS.gene029289:CDS | 55.0% |
| CCACTCCTCAGTGGCTTCCA+AGG | + | chr1.4:86540488-86540507 | MS.gene029289:CDS | 60.0% | |
| CCGTCATCCGCCGTGAATGA+TGG | + | chr1.4:86539912-86539931 | MS.gene029289:CDS | 60.0% | |
| CCTTGGAAGCCACTGAGGAG+TGG | - | chr1.4:86540491-86540510 | None:intergenic | 60.0% | |
| GTGGACGAGGCAGGAGATTC+TGG | + | chr1.4:86539968-86539987 | MS.gene029289:CDS | 60.0% | |
| GTTACAACGGTGGACGAGGC+AGG | + | chr1.4:86539959-86539978 | MS.gene029289:CDS | 60.0% | |
| ! | TCATTCACGGCGGATGACGG+TGG | - | chr1.4:86539912-86539931 | None:intergenic | 60.0% |
| !! | GCACCGGTTTCAGAGGTGGT+TGG | + | chr1.4:86540335-86540354 | MS.gene029289:CDS | 60.0% |
| !! | TGTGGCTGCACCGGTTTCAG+AGG | + | chr1.4:86540328-86540347 | MS.gene029289:CDS | 60.0% |
| AACGGCTGTTCCGGTGGCTG+TGG | + | chr1.4:86540310-86540329 | MS.gene029289:CDS | 65.0% | |
| GGTGGCTGCAACGGCTGTTC+CGG | + | chr1.4:86540301-86540320 | MS.gene029289:CDS | 65.0% | |
| !! | GGCTGCACCGGTTTCAGAGG+TGG | + | chr1.4:86540331-86540350 | MS.gene029289:CDS | 65.0% |
| ACCGGTGCAGCCACAGCCAC+CGG | - | chr1.4:86540323-86540342 | None:intergenic | 70.0% | |
| GGCTGCAACGGCTGTTCCGG+TGG | + | chr1.4:86540304-86540323 | MS.gene029289:CDS | 70.0% | |
| TCCGGTGGCTGTGGCTGCAC+CGG | + | chr1.4:86540319-86540338 | MS.gene029289:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 86539843 | 86540799 | 86539843 | ID=MS.gene029289 |
| chr1.4 | mRNA | 86539843 | 86540799 | 86539843 | ID=MS.gene029289.t1;Parent=MS.gene029289 |
| chr1.4 | exon | 86539843 | 86540799 | 86539843 | ID=MS.gene029289.t1.exon1;Parent=MS.gene029289.t1 |
| chr1.4 | CDS | 86539843 | 86540799 | 86539843 | ID=cds.MS.gene029289.t1;Parent=MS.gene029289.t1 |
| Gene Sequence |
| Protein sequence |
