Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029402.t1 | XP_013470181.1 | 79.4 | 436 | 7 | 1 | 1 | 353 | 1 | 436 | 4.70E-182 | 647.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029402.t1 | Q8RWD0 | 41.9 | 427 | 151 | 12 | 6 | 351 | 3 | 413 | 6.8e-65 | 249.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029402.t1 | A0A072VQB9 | 79.4 | 436 | 7 | 1 | 1 | 353 | 1 | 436 | 3.4e-182 | 647.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene029402.t1 | TF | C2C2-CO-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029402.t1 | MTR_1g110870 | 97.222 | 216 | 6 | 0 | 138 | 353 | 221 | 436 | 2.64e-155 | 443 |
| MS.gene029402.t1 | MTR_1g110870 | 98.582 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 3.62e-89 | 275 |
| MS.gene029402.t1 | MTR_8g104190 | 40.241 | 415 | 162 | 17 | 9 | 350 | 11 | 412 | 1.16e-70 | 226 |
| MS.gene029402.t1 | MTR_5g072780 | 44.144 | 111 | 42 | 3 | 233 | 341 | 124 | 216 | 3.25e-19 | 85.5 |
| MS.gene029402.t1 | MTR_7g032240 | 40.152 | 132 | 56 | 4 | 233 | 341 | 220 | 351 | 2.14e-17 | 82.8 |
| MS.gene029402.t1 | MTR_4g127420 | 44.898 | 98 | 42 | 4 | 238 | 335 | 293 | 378 | 8.27e-14 | 72.4 |
| MS.gene029402.t1 | MTR_1g013450 | 47.561 | 82 | 36 | 2 | 268 | 344 | 221 | 300 | 2.12e-12 | 67.4 |
| MS.gene029402.t1 | MTR_3g105710 | 63.636 | 55 | 16 | 1 | 287 | 341 | 224 | 274 | 5.68e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029402.t1 | AT1G25440 | 43.812 | 404 | 156 | 10 | 6 | 341 | 3 | 403 | 9.41e-82 | 255 |
| MS.gene029402.t1 | AT1G73870 | 36.500 | 400 | 173 | 20 | 8 | 344 | 9 | 390 | 1.48e-49 | 171 |
| MS.gene029402.t1 | AT1G49130 | 35.475 | 358 | 149 | 14 | 15 | 346 | 23 | 324 | 1.69e-43 | 153 |
| MS.gene029402.t1 | AT1G49130 | 35.311 | 354 | 148 | 12 | 15 | 342 | 16 | 314 | 2.37e-43 | 152 |
| MS.gene029402.t1 | AT1G68520 | 49.704 | 169 | 67 | 6 | 195 | 346 | 237 | 404 | 1.26e-36 | 137 |
| MS.gene029402.t1 | AT1G68520 | 54.015 | 137 | 46 | 5 | 6 | 140 | 3 | 124 | 1.90e-34 | 131 |
| MS.gene029402.t1 | AT4G25990 | 49.533 | 107 | 38 | 3 | 235 | 341 | 293 | 383 | 3.29e-22 | 97.1 |
| MS.gene029402.t1 | AT5G57180 | 45.217 | 115 | 43 | 3 | 235 | 348 | 337 | 432 | 8.77e-22 | 96.3 |
| MS.gene029402.t1 | AT5G14370 | 38.028 | 142 | 73 | 4 | 208 | 341 | 202 | 336 | 1.35e-18 | 85.9 |
| MS.gene029402.t1 | AT4G25990 | 39.716 | 141 | 54 | 4 | 216 | 341 | 274 | 398 | 1.38e-18 | 86.7 |
| MS.gene029402.t1 | AT4G25990 | 42.500 | 120 | 53 | 3 | 216 | 335 | 274 | 377 | 2.67e-18 | 85.5 |
| MS.gene029402.t1 | AT1G07050 | 43.750 | 128 | 45 | 5 | 220 | 343 | 91 | 195 | 1.07e-17 | 80.9 |
| MS.gene029402.t1 | AT5G57180 | 45.098 | 102 | 36 | 3 | 235 | 335 | 337 | 419 | 3.20e-17 | 82.8 |
| MS.gene029402.t1 | AT1G07050 | 41.667 | 120 | 43 | 5 | 220 | 335 | 91 | 187 | 3.17e-13 | 68.2 |
| MS.gene029402.t1 | AT5G24930 | 52.113 | 71 | 28 | 1 | 277 | 341 | 267 | 337 | 1.27e-11 | 65.5 |
| MS.gene029402.t1 | AT5G15840 | 47.436 | 78 | 33 | 3 | 1 | 75 | 41 | 113 | 3.83e-11 | 64.3 |
| MS.gene029402.t1 | AT5G15840 | 47.436 | 78 | 33 | 3 | 1 | 75 | 41 | 113 | 5.68e-11 | 62.8 |
Find 80 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGGTGTTCTTGCCTTCT+TGG | 0.140899 | 1.4:+84528870 | None:intergenic |
| GAAGAATTCATCACCATTAA+TGG | 0.149936 | 1.4:+84528918 | None:intergenic |
| ACAAATCTCCCTTTCATTCT+TGG | 0.185521 | 1.4:+84527476 | None:intergenic |
| ATTATTTATCAGGGAACTTT+TGG | 0.202916 | 1.4:-84527668 | MS.gene029402:intron |
| TGAAAATAATGATTATAATA+AGG | 0.203891 | 1.4:-84528212 | MS.gene029402:CDS |
| TTCTCATCAGCATCCAAATT+TGG | 0.222169 | 1.4:+84528100 | None:intergenic |
| TATGGTGAGTTTGGTGGATA+TGG | 0.250845 | 1.4:-84527626 | MS.gene029402:CDS |
| TAATGGTGACAAGCCAAATT+TGG | 0.271510 | 1.4:-84528113 | MS.gene029402:CDS |
| CTGCCTCCATCTACCGTTAC+TGG | 0.277791 | 1.4:+84527596 | None:intergenic |
| ATGAGGCGCAACTTCTTTAC+AGG | 0.278532 | 1.4:-84528723 | MS.gene029402:CDS |
| GAAAATAATGATTATAATAA+GGG | 0.279237 | 1.4:-84528211 | MS.gene029402:CDS |
| GCGTCGTACAAGTCCATTAA+TGG | 0.290118 | 1.4:-84528931 | MS.gene029402:CDS |
| ACGGAGGTTCATTATGCTTA+TGG | 0.290853 | 1.4:-84527644 | MS.gene029402:CDS |
| CATTATGCTTATGGTGAGTT+TGG | 0.336402 | 1.4:-84527635 | MS.gene029402:CDS |
| TTCTTGGTGAAGCCAGAAAA+AGG | 0.344434 | 1.4:+84528886 | None:intergenic |
| GGTTGTTCTCAAAGAAAATA+AGG | 0.347288 | 1.4:-84527532 | MS.gene029402:CDS |
| TTTCATCTTGTGCCGGAGTT+AGG | 0.348067 | 1.4:-84528781 | MS.gene029402:CDS |
| CATTAGTCCAGGGACACTTT+TGG | 0.361781 | 1.4:+84528131 | None:intergenic |
| AGAAAATAAGGTACGAGGTT+AGG | 0.382846 | 1.4:-84527520 | MS.gene029402:CDS |
| GATTAGAAAATGAGTGTATA+GGG | 0.387111 | 1.4:-84528450 | MS.gene029402:CDS |
| GGATTAGAAAATGAGTGTAT+AGG | 0.395364 | 1.4:-84528451 | MS.gene029402:CDS |
| CAAAAGTGTCCCTGGACTAA+TGG | 0.395385 | 1.4:-84528130 | MS.gene029402:CDS |
| TGTCATCCAGTAACGGTAGA+TGG | 0.408098 | 1.4:-84527602 | MS.gene029402:CDS |
| TGAAAGGGAGATTTGTAAAG+AGG | 0.412017 | 1.4:-84527469 | MS.gene029402:CDS |
| GGAGATAATATGATGGAGAT+TGG | 0.419606 | 1.4:-84528322 | MS.gene029402:CDS |
| GAAGGCAAGAACACCAAGAC+AGG | 0.424009 | 1.4:-84528866 | MS.gene029402:CDS |
| GCAGAGAGGCAAGGGTTTCA+AGG | 0.431755 | 1.4:-84527577 | MS.gene029402:CDS |
| TGTATAGGGATGGAAGAGTT+GGG | 0.440723 | 1.4:-84528436 | MS.gene029402:CDS |
| ATAAATTATACCATGCAATC+AGG | 0.445629 | 1.4:+84528073 | None:intergenic |
| AACTCCGGCACAAGATGAAA+CGG | 0.453947 | 1.4:+84528784 | None:intergenic |
| GATTTGTGTTTCCCCTGTCT+TGG | 0.455579 | 1.4:+84528853 | None:intergenic |
| ATTTGGATGCTGATGAGAAC+TGG | 0.465263 | 1.4:-84528096 | MS.gene029402:CDS |
| GTGTATAGGGATGGAAGAGT+TGG | 0.474392 | 1.4:-84528437 | MS.gene029402:CDS |
| TGGCTTGTCACCATTAGTCC+AGG | 0.479305 | 1.4:+84528120 | None:intergenic |
| AGTGAGAAGTGGAAGTGTAG+TGG | 0.486251 | 1.4:-84528388 | MS.gene029402:CDS |
| CTGTTGGAGGCAAAACTGCT+AGG | 0.494037 | 1.4:-84529092 | MS.gene029402:CDS |
| AGTGGAAAGGTGAAGGAAGA+AGG | 0.494618 | 1.4:-84528370 | MS.gene029402:CDS |
| TATGCTTATGGTGAGTTTGG+TGG | 0.509644 | 1.4:-84527632 | MS.gene029402:CDS |
| AGAGAGCTATGAAATTGTTG+AGG | 0.512413 | 1.4:-84528344 | MS.gene029402:CDS |
| AGATGGAGGCAGAGAGGCAA+GGG | 0.513332 | 1.4:-84527585 | MS.gene029402:CDS |
| GAGAAGAGACCAAGAATGAA+AGG | 0.514881 | 1.4:-84527485 | MS.gene029402:CDS |
| ATATTATTATTATTCCTCGC+TGG | 0.519712 | 1.4:+84528808 | None:intergenic |
| GAGAGCTATGAAATTGTTGA+GGG | 0.520749 | 1.4:-84528343 | MS.gene029402:CDS |
| GGGATAGCCAAAAGTGTCCC+TGG | 0.521182 | 1.4:-84528138 | MS.gene029402:CDS |
| ACTCCGGCACAAGATGAAAC+GGG | 0.530371 | 1.4:+84528785 | None:intergenic |
| GAAAGGGAGATTTGTAAAGA+GGG | 0.538232 | 1.4:-84527468 | MS.gene029402:CDS |
| TGAAACATGTGAAGAGGTGA+AGG | 0.548485 | 1.4:-84528254 | MS.gene029402:CDS |
| AACGTAGCAAACGCTGTTGG+AGG | 0.555203 | 1.4:-84529105 | MS.gene029402:CDS |
| AAATTCACATGACGAAAATG+AGG | 0.559316 | 1.4:-84528740 | MS.gene029402:CDS |
| ATGATGCAGTAATCATTGCA+TGG | 0.567325 | 1.4:-84528159 | MS.gene029402:CDS |
| AGAAGAGACCAAGAATGAAA+GGG | 0.570209 | 1.4:-84527484 | MS.gene029402:CDS |
| GAAGTGTAGTGGAAAGGTGA+AGG | 0.573136 | 1.4:-84528377 | MS.gene029402:CDS |
| TGATGCAGTAATCATTGCAT+GGG | 0.576146 | 1.4:-84528158 | MS.gene029402:CDS |
| AGCATGAGGAGAGTGAGAAG+TGG | 0.578354 | 1.4:-84528399 | MS.gene029402:CDS |
| CCTCGCTGGTTCACTGCTCG+AGG | 0.578376 | 1.4:+84528822 | None:intergenic |
| TAGATGGAGGCAGAGAGGCA+AGG | 0.578587 | 1.4:-84527586 | MS.gene029402:CDS |
| GGCTTGTCACCATTAGTCCA+GGG | 0.579867 | 1.4:+84528121 | None:intergenic |
| TGTTGAGGGAGATAATATGA+TGG | 0.580179 | 1.4:-84528329 | MS.gene029402:CDS |
| AAAATAATGATTATAATAAG+GGG | 0.580910 | 1.4:-84528210 | MS.gene029402:CDS |
| TGTTGGAGGCAAAACTGCTA+GGG | 0.581207 | 1.4:-84529091 | MS.gene029402:CDS |
| AGAAAATGAGTGTATAGGGA+TGG | 0.586862 | 1.4:-84528446 | MS.gene029402:CDS |
| TATCCCGTTTCATCTTGTGC+CGG | 0.588273 | 1.4:-84528788 | MS.gene029402:CDS |
| GGTGATGAATTCTTCAATTG+TGG | 0.591451 | 1.4:-84528910 | MS.gene029402:CDS |
| GAAGAGGTGAAGGAGAAGTG+TGG | 0.601873 | 1.4:-84528244 | MS.gene029402:CDS |
| AGGAAATGTTGGAACTGCAA+AGG | 0.601959 | 1.4:+84527442 | None:intergenic |
| TGAGAACTGGCCTGATTGCA+TGG | 0.605682 | 1.4:-84528083 | MS.gene029402:intron |
| ATTGATTGATACAAAGCATG+AGG | 0.625826 | 1.4:-84528413 | MS.gene029402:CDS |
| CTCAAAGAAAATAAGGTACG+AGG | 0.632554 | 1.4:-84527525 | MS.gene029402:CDS |
| AACGGTAGATGGAGGCAGAG+AGG | 0.643178 | 1.4:-84527591 | MS.gene029402:CDS |
| ACAGAGAAAAGCGAAGAACA+AGG | 0.643427 | 1.4:-84527553 | MS.gene029402:CDS |
| TTCTCATGAAACATGTGAAG+AGG | 0.648117 | 1.4:-84528260 | MS.gene029402:CDS |
| AGGCAAGAACACCAAGACAG+GGG | 0.648532 | 1.4:-84528864 | MS.gene029402:CDS |
| GAAGTGGAAGTGTAGTGGAA+AGG | 0.652932 | 1.4:-84528383 | MS.gene029402:CDS |
| AAGGCAAGAACACCAAGACA+GGG | 0.653824 | 1.4:-84528865 | MS.gene029402:CDS |
| ACTTCATCGAAACCTAACTC+CGG | 0.656115 | 1.4:+84528769 | None:intergenic |
| ATATGGATGTCATCCAGTAA+CGG | 0.662808 | 1.4:-84527609 | MS.gene029402:CDS |
| TGAGGCGCAACTTCTTTACA+GGG | 0.664773 | 1.4:-84528722 | MS.gene029402:intron |
| CATCCAGTAACGGTAGATGG+AGG | 0.676181 | 1.4:-84527599 | MS.gene029402:CDS |
| CCTCGAGCAGTGAACCAGCG+AGG | 0.723417 | 1.4:-84528822 | MS.gene029402:CDS |
| GCATAACAAAGAGAGCACGT+TGG | 0.777160 | 1.4:-84529056 | MS.gene029402:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATGATTATAATAAG+GGG | - | chr1.4:84528343-84528362 | MS.gene029402:CDS | 10.0% |
| !! | AAAATATCTAAATGTATATT+TGG | + | chr1.4:84528630-84528649 | None:intergenic | 10.0% |
| !! | GAAAATAATGATTATAATAA+GGG | - | chr1.4:84528342-84528361 | MS.gene029402:CDS | 10.0% |
| !! | TGAAAATAATGATTATAATA+AGG | - | chr1.4:84528341-84528360 | MS.gene029402:CDS | 10.0% |
| !!! | CTTTCTATCAAATTTTATAA+AGG | - | chr1.4:84528822-84528841 | MS.gene029402:CDS | 15.0% |
| !!! | TATATCTTAATTTTTCTTCA+TGG | - | chr1.4:84528500-84528519 | MS.gene029402:intron | 15.0% |
| !! | ATTTGATAGAAAGAAAAAAG+TGG | + | chr1.4:84528815-84528834 | None:intergenic | 20.0% |
| !! | TAGTGATAATAATTATGAGA+TGG | - | chr1.4:84528002-84528021 | MS.gene029402:intron | 20.0% |
| !! | TTTACTGTTAGATTAATCAT+TGG | - | chr1.4:84528789-84528808 | MS.gene029402:CDS | 20.0% |
| ! | ATAAATTATACCATGCAATC+AGG | + | chr1.4:84528483-84528502 | None:intergenic | 25.0% |
| ! | ATATTATTATTATTCCTCGC+TGG | + | chr1.4:84527748-84527767 | None:intergenic | 25.0% |
| ! | GATACCAATCATTAACTAAA+GGG | + | chr1.4:84528551-84528570 | None:intergenic | 25.0% |
| ! | GATTAGAAAATGAGTGTATA+GGG | - | chr1.4:84528103-84528122 | MS.gene029402:CDS | 25.0% |
| ! | TGATACCAATCATTAACTAA+AGG | + | chr1.4:84528552-84528571 | None:intergenic | 25.0% |
| !! | ATTATTTATCAGGGAACTTT+TGG | - | chr1.4:84528885-84528904 | MS.gene029402:CDS | 25.0% |
| !!! | TATTTTAGCAAAGGAAATGT+TGG | + | chr1.4:84529125-84529144 | None:intergenic | 25.0% |
| AAATTCACATGACGAAAATG+AGG | - | chr1.4:84527813-84527832 | MS.gene029402:intron | 30.0% | |
| ATTGATTGATACAAAGCATG+AGG | - | chr1.4:84528140-84528159 | MS.gene029402:CDS | 30.0% | |
| CAATCCCTTTAGTTAATGAT+TGG | - | chr1.4:84528544-84528563 | MS.gene029402:intron | 30.0% | |
| GAAGAATTCATCACCATTAA+TGG | + | chr1.4:84527638-84527657 | None:intergenic | 30.0% | |
| GGATTAGAAAATGAGTGTAT+AGG | - | chr1.4:84528102-84528121 | MS.gene029402:CDS | 30.0% | |
| GGTTGTTCTCAAAGAAAATA+AGG | - | chr1.4:84529021-84529040 | MS.gene029402:CDS | 30.0% | |
| !!! | CTCTCATTGTTTTTAACATC+AGG | + | chr1.4:84527961-84527980 | None:intergenic | 30.0% |
| ACAAATCTCCCTTTCATTCT+TGG | + | chr1.4:84529080-84529099 | None:intergenic | 35.0% | |
| ACAGTAAAATAGTGAACAGC+AGG | + | chr1.4:84528777-84528796 | None:intergenic | 35.0% | |
| AGAAAATAAGGTACGAGGTT+AGG | - | chr1.4:84529033-84529052 | MS.gene029402:CDS | 35.0% | |
| AGAAAATGAGTGTATAGGGA+TGG | - | chr1.4:84528107-84528126 | MS.gene029402:CDS | 35.0% | |
| AGAAGAGACCAAGAATGAAA+GGG | - | chr1.4:84529069-84529088 | MS.gene029402:CDS | 35.0% | |
| AGAGAGCTATGAAATTGTTG+AGG | - | chr1.4:84528209-84528228 | MS.gene029402:CDS | 35.0% | |
| ATATGGATGTCATCCAGTAA+CGG | - | chr1.4:84528944-84528963 | MS.gene029402:CDS | 35.0% | |
| ATGATGCAGTAATCATTGCA+TGG | - | chr1.4:84528394-84528413 | MS.gene029402:CDS | 35.0% | |
| CATGAGTGTGTCAAAAATCA+CGG | + | chr1.4:84528601-84528620 | None:intergenic | 35.0% | |
| CATTATGCTTATGGTGAGTT+TGG | - | chr1.4:84528918-84528937 | MS.gene029402:CDS | 35.0% | |
| CTCAAAGAAAATAAGGTACG+AGG | - | chr1.4:84529028-84529047 | MS.gene029402:CDS | 35.0% | |
| GAAAGGGAGATTTGTAAAGA+GGG | - | chr1.4:84529085-84529104 | MS.gene029402:CDS | 35.0% | |
| GAGAGCTATGAAATTGTTGA+GGG | - | chr1.4:84528210-84528229 | MS.gene029402:CDS | 35.0% | |
| GCTAATTCAATATCAGATGG+AGG | + | chr1.4:84528045-84528064 | None:intergenic | 35.0% | |
| GGTGATGAATTCTTCAATTG+TGG | - | chr1.4:84527643-84527662 | MS.gene029402:CDS | 35.0% | |
| GTACATAATTCAGCAACAGA+AGG | + | chr1.4:84527871-84527890 | None:intergenic | 35.0% | |
| TAATGGTGACAAGCCAAATT+TGG | - | chr1.4:84528440-84528459 | MS.gene029402:CDS | 35.0% | |
| TCGGCTAATTCAATATCAGA+TGG | + | chr1.4:84528048-84528067 | None:intergenic | 35.0% | |
| TGAAAGGGAGATTTGTAAAG+AGG | - | chr1.4:84529084-84529103 | MS.gene029402:CDS | 35.0% | |
| TGATGCAGTAATCATTGCAT+GGG | - | chr1.4:84528395-84528414 | MS.gene029402:CDS | 35.0% | |
| TGTTGAGGGAGATAATATGA+TGG | - | chr1.4:84528224-84528243 | MS.gene029402:CDS | 35.0% | |
| TTCTCATCAGCATCCAAATT+TGG | + | chr1.4:84528456-84528475 | None:intergenic | 35.0% | |
| TTCTCATGAAACATGTGAAG+AGG | - | chr1.4:84528293-84528312 | MS.gene029402:CDS | 35.0% | |
| ! | GGAGATAATATGATGGAGAT+TGG | - | chr1.4:84528231-84528250 | MS.gene029402:CDS | 35.0% |
| ! | TTCAATTGTGGTCCTTTTTC+TGG | - | chr1.4:84527655-84527674 | MS.gene029402:CDS | 35.0% |
| !! | TTATCAGGGAACTTTTGGAA+CGG | - | chr1.4:84528890-84528909 | MS.gene029402:CDS | 35.0% |
| AAAAACGTAGCAAACGCTGT+TGG | - | chr1.4:84527445-84527464 | MS.gene029402:CDS | 40.0% | |
| ACAGAGAAAAGCGAAGAACA+AGG | - | chr1.4:84529000-84529019 | MS.gene029402:CDS | 40.0% | |
| ACGGAGGTTCATTATGCTTA+TGG | - | chr1.4:84528909-84528928 | MS.gene029402:CDS | 40.0% | |
| ACTTCATCGAAACCTAACTC+CGG | + | chr1.4:84527787-84527806 | None:intergenic | 40.0% | |
| AGCTGATGTTGAGAGCTTAT+TGG | - | chr1.4:84528074-84528093 | MS.gene029402:intron | 40.0% | |
| AGGAAATGTTGGAACTGCAA+AGG | + | chr1.4:84529114-84529133 | None:intergenic | 40.0% | |
| ATTTGGATGCTGATGAGAAC+TGG | - | chr1.4:84528457-84528476 | MS.gene029402:intron | 40.0% | |
| CTCAACATCAGCTGCAAATT+CGG | + | chr1.4:84528067-84528086 | None:intergenic | 40.0% | |
| CTTTACAACACTTGCACACA+CGG | - | chr1.4:84528728-84528747 | MS.gene029402:CDS | 40.0% | |
| GAGAAGAGACCAAGAATGAA+AGG | - | chr1.4:84529068-84529087 | MS.gene029402:CDS | 40.0% | |
| GCAACAGAAGGATCGAAAAT+TGG | + | chr1.4:84527859-84527878 | None:intergenic | 40.0% | |
| GCTGATGTTGAGAGCTTATT+GGG | - | chr1.4:84528075-84528094 | MS.gene029402:intron | 40.0% | |
| GTTGAGAGCTTATTGGGTAA+GGG | - | chr1.4:84528081-84528100 | MS.gene029402:intron | 40.0% | |
| TATGCTTATGGTGAGTTTGG+TGG | - | chr1.4:84528921-84528940 | MS.gene029402:CDS | 40.0% | |
| TGAAACATGTGAAGAGGTGA+AGG | - | chr1.4:84528299-84528318 | MS.gene029402:CDS | 40.0% | |
| TGTATAGGGATGGAAGAGTT+GGG | - | chr1.4:84528117-84528136 | MS.gene029402:CDS | 40.0% | |
| TGTTGAGAGCTTATTGGGTA+AGG | - | chr1.4:84528080-84528099 | MS.gene029402:intron | 40.0% | |
| TTCTTGGTGAAGCCAGAAAA+AGG | + | chr1.4:84527670-84527689 | None:intergenic | 40.0% | |
| ! | CGTGATTTTTGACACACTCA+TGG | - | chr1.4:84528599-84528618 | MS.gene029402:intron | 40.0% |
| ! | TATGGTGAGTTTGGTGGATA+TGG | - | chr1.4:84528927-84528946 | MS.gene029402:CDS | 40.0% |
| !!! | TTTTTCTGGCTTCACCAAGA+AGG | - | chr1.4:84527669-84527688 | MS.gene029402:intron | 40.0% |
| AACTCCGGCACAAGATGAAA+CGG | + | chr1.4:84527772-84527791 | None:intergenic | 45.0% | |
| AAGGCAAGAACACCAAGACA+GGG | - | chr1.4:84527688-84527707 | MS.gene029402:intron | 45.0% | |
| AGCGAAAGCAGAGTTCAACT+AGG | - | chr1.4:84527979-84527998 | MS.gene029402:intron | 45.0% | |
| AGTGGAAAGGTGAAGGAAGA+AGG | - | chr1.4:84528183-84528202 | MS.gene029402:CDS | 45.0% | |
| ATGAGGCGCAACTTCTTTAC+AGG | - | chr1.4:84527830-84527849 | MS.gene029402:intron | 45.0% | |
| CCTTCAGTTGAACCAACTGA+AGG | + | chr1.4:84527901-84527920 | None:intergenic | 45.0% | |
| GATTTGTGTTTCCCCTGTCT+TGG | + | chr1.4:84527703-84527722 | None:intergenic | 45.0% | |
| GCAGGTCTAACACAAGTGAA+TGG | + | chr1.4:84528759-84528778 | None:intergenic | 45.0% | |
| GCGTCGTACAAGTCCATTAA+TGG | - | chr1.4:84527622-84527641 | MS.gene029402:CDS | 45.0% | |
| GTGTATAGGGATGGAAGAGT+TGG | - | chr1.4:84528116-84528135 | MS.gene029402:CDS | 45.0% | |
| TATCCCGTTTCATCTTGTGC+CGG | - | chr1.4:84527765-84527784 | MS.gene029402:intron | 45.0% | |
| TCAGTTGAACCAACTGAAGG+AGG | + | chr1.4:84527898-84527917 | None:intergenic | 45.0% | |
| TGAGGCGCAACTTCTTTACA+GGG | - | chr1.4:84527831-84527850 | MS.gene029402:intron | 45.0% | |
| TGTACTAGTCCTCCTTCAGT+TGG | - | chr1.4:84527886-84527905 | MS.gene029402:intron | 45.0% | |
| TGTCATCCAGTAACGGTAGA+TGG | - | chr1.4:84528951-84528970 | MS.gene029402:CDS | 45.0% | |
| TGTTGGAGGCAAAACTGCTA+GGG | - | chr1.4:84527462-84527481 | MS.gene029402:CDS | 45.0% | |
| TTTCATCTTGTGCCGGAGTT+AGG | - | chr1.4:84527772-84527791 | MS.gene029402:intron | 45.0% | |
| ! | AGTGAGAAGTGGAAGTGTAG+TGG | - | chr1.4:84528165-84528184 | MS.gene029402:CDS | 45.0% |
| ! | CATTAGTCCAGGGACACTTT+TGG | + | chr1.4:84528425-84528444 | None:intergenic | 45.0% |
| ! | CCTTCAGTTGGTTCAACTGA+AGG | - | chr1.4:84527898-84527917 | MS.gene029402:intron | 45.0% |
| ! | GAAGTGGAAGTGTAGTGGAA+AGG | - | chr1.4:84528170-84528189 | MS.gene029402:CDS | 45.0% |
| ! | GAAGTGTAGTGGAAAGGTGA+AGG | - | chr1.4:84528176-84528195 | MS.gene029402:CDS | 45.0% |
| ! | GCATAACAAAGAGAGCACGT+TGG | - | chr1.4:84527497-84527516 | MS.gene029402:CDS | 45.0% |
| ! | TCAGTTGGTTCAACTGAAGG+AGG | - | chr1.4:84527901-84527920 | MS.gene029402:intron | 45.0% |
| !! | CAAAAGTGTCCCTGGACTAA+TGG | - | chr1.4:84528423-84528442 | MS.gene029402:CDS | 45.0% |
| !! | TCTTGGTGTTCTTGCCTTCT+TGG | + | chr1.4:84527686-84527705 | None:intergenic | 45.0% |
| !!! | TTTAATTTAATTATTTATCA+GGG | - | chr1.4:84528876-84528895 | MS.gene029402:CDS | 5.0% |
| !!! | TTTTAATTTAATTATTTATC+AGG | - | chr1.4:84528875-84528894 | MS.gene029402:CDS | 5.0% |
| AACGTAGCAAACGCTGTTGG+AGG | - | chr1.4:84527448-84527467 | MS.gene029402:CDS | 50.0% | |
| AACTGAAGGAGGACTAGGAG+TGG | - | chr1.4:84527912-84527931 | MS.gene029402:intron | 50.0% | |
| ACTCCGGCACAAGATGAAAC+GGG | + | chr1.4:84527771-84527790 | None:intergenic | 50.0% | |
| AGCATGAGGAGAGTGAGAAG+TGG | - | chr1.4:84528154-84528173 | MS.gene029402:CDS | 50.0% | |
| AGGCAAGAACACCAAGACAG+GGG | - | chr1.4:84527689-84527708 | MS.gene029402:intron | 50.0% | |
| CATCCAGTAACGGTAGATGG+AGG | - | chr1.4:84528954-84528973 | MS.gene029402:CDS | 50.0% | |
| CTGTTGGAGGCAAAACTGCT+AGG | - | chr1.4:84527461-84527480 | MS.gene029402:CDS | 50.0% | |
| GAAGAGGTGAAGGAGAAGTG+TGG | - | chr1.4:84528309-84528328 | MS.gene029402:CDS | 50.0% | |
| GAAGGCAAGAACACCAAGAC+AGG | - | chr1.4:84527687-84527706 | MS.gene029402:intron | 50.0% | |
| GGCTTGTCACCATTAGTCCA+GGG | + | chr1.4:84528435-84528454 | None:intergenic | 50.0% | |
| GGTTCAACTGAAGGAGGACT+AGG | - | chr1.4:84527907-84527926 | MS.gene029402:intron | 50.0% | |
| ! | TGAGAACTGGCCTGATTGCA+TGG | - | chr1.4:84528470-84528489 | MS.gene029402:intron | 50.0% |
| ! | TGGCTTGTCACCATTAGTCC+AGG | + | chr1.4:84528436-84528455 | None:intergenic | 50.0% |
| !!! | TCAGGGAACTTTTGGAACGG+AGG | - | chr1.4:84528893-84528912 | MS.gene029402:CDS | 50.0% |
| AACGGTAGATGGAGGCAGAG+AGG | - | chr1.4:84528962-84528981 | MS.gene029402:CDS | 55.0% | |
| AGATGGAGGCAGAGAGGCAA+GGG | - | chr1.4:84528968-84528987 | MS.gene029402:CDS | 55.0% | |
| CTGCCTCCATCTACCGTTAC+TGG | + | chr1.4:84528960-84528979 | None:intergenic | 55.0% | |
| GCAGAGAGGCAAGGGTTTCA+AGG | - | chr1.4:84528976-84528995 | MS.gene029402:CDS | 55.0% | |
| TAGATGGAGGCAGAGAGGCA+AGG | - | chr1.4:84528967-84528986 | MS.gene029402:CDS | 55.0% | |
| !! | GGGATAGCCAAAAGTGTCCC+TGG | - | chr1.4:84528415-84528434 | MS.gene029402:CDS | 55.0% |
| CCTCGAGCAGTGAACCAGCG+AGG | - | chr1.4:84527731-84527750 | MS.gene029402:intron | 65.0% | |
| !! | CCTCGCTGGTTCACTGCTCG+AGG | + | chr1.4:84527734-84527753 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 84527430 | 84529145 | 84527430 | ID=MS.gene029402 |
| chr1.4 | mRNA | 84527430 | 84529145 | 84527430 | ID=MS.gene029402.t1;Parent=MS.gene029402 |
| chr1.4 | exon | 84528723 | 84529145 | 84528723 | ID=MS.gene029402.t1.exon1;Parent=MS.gene029402.t1 |
| chr1.4 | CDS | 84528723 | 84529145 | 84528723 | ID=cds.MS.gene029402.t1;Parent=MS.gene029402.t1 |
| chr1.4 | exon | 84528084 | 84528473 | 84528084 | ID=MS.gene029402.t1.exon2;Parent=MS.gene029402.t1 |
| chr1.4 | CDS | 84528084 | 84528473 | 84528084 | ID=cds.MS.gene029402.t1;Parent=MS.gene029402.t1 |
| chr1.4 | exon | 84527430 | 84527678 | 84527430 | ID=MS.gene029402.t1.exon3;Parent=MS.gene029402.t1 |
| chr1.4 | CDS | 84527430 | 84527678 | 84527430 | ID=cds.MS.gene029402.t1;Parent=MS.gene029402.t1 |
| Gene Sequence |
| Protein sequence |
