AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029507

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029507.t1 MTR_1g108780 95.778 450 19 0 35 484 12 461 0.0 910
MS.gene029507.t1 MTR_8g103940 70.124 482 135 6 1 482 24 496 0.0 690
MS.gene029507.t1 MTR_1g035460 46.552 406 193 11 36 429 2 395 4.94e-106 321
MS.gene029507.t1 MTR_3g098790 35.691 311 169 7 15 313 8 299 3.98e-54 184
MS.gene029507.t1 MTR_7g050710 35.873 315 165 10 18 313 11 307 4.61e-54 184
MS.gene029507.t1 MTR_7g050720 35.938 320 165 12 20 313 10 315 5.35e-52 179
MS.gene029507.t1 MTR_7g050590 36.149 296 154 11 36 313 2 280 2.39e-49 171
MS.gene029507.t1 MTR_7g050580 34.494 316 147 9 20 313 13 290 2.70e-49 171
MS.gene029507.t1 MTR_7g050580 23.473 311 152 11 224 481 13 290 3.48e-11 64.7
MS.gene029507.t1 MTR_7g050560 32.915 319 164 8 12 313 5 290 3.06e-49 171
MS.gene029507.t1 MTR_3g061370 33.439 314 157 8 15 312 4 281 7.27e-48 167
MS.gene029507.t1 MTR_3g061350 33.654 312 153 10 18 312 10 284 1.30e-45 160
MS.gene029507.t1 MTR_3g061340 32.573 307 161 10 14 312 6 274 2.70e-45 159
MS.gene029507.t1 MTR_3g061340 34.884 129 76 4 353 480 153 274 8.38e-13 68.9
MS.gene029507.t1 MTR_5g044670 30.178 338 185 11 5 320 2 310 2.58e-44 159
MS.gene029507.t1 MTR_3g061310 32.258 310 161 9 18 312 10 285 8.90e-44 156
MS.gene029507.t1 MTR_3g061310 29.927 274 153 11 236 480 22 285 1.81e-16 80.1
MS.gene029507.t1 MTR_3g061320 32.258 310 155 11 18 312 10 279 6.77e-42 150
MS.gene029507.t1 MTR_3g061320 35.965 114 68 3 368 480 170 279 1.08e-11 65.9
MS.gene029507.t1 MTR_3g061330 31.769 277 139 8 18 279 10 251 1.88e-38 140
MS.gene029507.t1 MTR_6g061070 25.397 504 316 14 3 480 1 470 6.25e-34 133
MS.gene029507.t1 MTR_3g061290 40.667 150 80 2 18 160 10 157 1.89e-32 123
MS.gene029507.t1 MTR_4g119990 27.500 320 202 11 15 317 10 316 2.42e-31 124
MS.gene029507.t1 MTR_1g035570 31.046 306 166 10 29 317 14 291 2.73e-30 122
MS.gene029507.t1 MTR_6g043890 26.263 297 200 8 16 304 11 296 1.75e-29 118
MS.gene029507.t1 MTR_1g035620 25.316 474 270 19 20 481 9 410 2.82e-29 119
MS.gene029507.t1 MTR_3g005420 27.273 319 166 11 8 314 273 537 2.17e-27 115
MS.gene029507.t1 MTR_3g005420 31.000 100 68 1 20 118 40 139 5.44e-11 65.1
MS.gene029507.t1 MTR_5g070440 26.144 306 158 9 20 314 21 269 1.24e-26 108
MS.gene029507.t1 MTR_7g050640 45.833 96 52 0 18 113 11 106 4.56e-26 102
MS.gene029507.t1 MTR_1g035640 27.729 339 198 12 29 357 14 315 2.50e-25 108
MS.gene029507.t1 MTR_3g005480 25.329 304 155 8 20 314 21 261 1.45e-24 103
MS.gene029507.t1 MTR_3g061220 39.024 123 54 3 18 134 10 117 2.32e-21 89.7
MS.gene029507.t1 MTR_1g021400 25.378 331 197 12 25 317 36 354 3.86e-20 92.4
MS.gene029507.t1 MTR_3g005460 24.204 314 168 8 17 314 259 518 4.16e-20 93.6
MS.gene029507.t1 MTR_3g005460 22.027 513 327 17 20 480 25 516 1.57e-19 91.7
MS.gene029507.t1 MTR_1g035490 26.298 289 169 9 204 484 79 331 6.40e-20 91.3
MS.gene029507.t1 MTR_1g021330 25.905 359 213 13 18 331 24 374 1.14e-19 91.3
MS.gene029507.t1 MTR_1g035520 24.917 301 195 8 36 311 88 382 2.27e-19 90.1
MS.gene029507.t1 MTR_4g068320 37.963 108 67 0 20 127 6 113 2.37e-19 90.5
MS.gene029507.t1 MTR_4g068320 38.931 131 72 4 201 324 270 399 2.62e-18 87.4
MS.gene029507.t1 MTR_1g021435 25.074 339 200 13 25 317 28 358 1.60e-18 87.4
MS.gene029507.t1 MTR_1g050845 25.424 295 179 7 20 311 9 265 1.71e-18 89.4
MS.gene029507.t1 MTR_1g021360 25.887 282 176 8 34 301 196 458 1.46e-17 85.5
MS.gene029507.t1 MTR_1g034240 35.036 137 74 3 20 141 7 143 4.10e-17 84.0
MS.gene029507.t1 MTR_1g034240 36.434 129 72 5 201 321 274 400 2.11e-15 78.6
MS.gene029507.t1 MTR_3g005490 26.966 178 114 3 20 181 21 198 7.32e-17 80.9
MS.gene029507.t1 MTR_1g021380 22.687 335 204 11 18 317 20 334 8.61e-17 82.0
MS.gene029507.t1 MTR_1g098450 26.647 334 192 16 10 327 2 298 2.06e-16 80.5
MS.gene029507.t1 MTR_1g035650 35.000 100 63 1 19 118 8 105 8.04e-16 76.6
MS.gene029507.t1 MTR_1g033740 34.746 118 74 2 15 132 17 131 1.13e-15 75.9
MS.gene029507.t1 MTR_3g005495 25.685 292 141 9 20 304 243 465 4.44e-15 77.8
MS.gene029507.t1 MTR_3g005495 33.333 84 56 0 35 118 28 111 2.69e-12 69.3
MS.gene029507.t1 MTR_3g061300 37.288 118 69 3 368 484 14 127 5.60e-15 72.0
MS.gene029507.t1 MTR_1g034210 34.746 118 68 4 211 321 251 366 2.92e-14 74.7
MS.gene029507.t1 MTR_1g034210 35.354 99 62 1 20 118 7 103 3.92e-12 68.2
MS.gene029507.t1 MTR_1g035500 33.898 118 75 2 15 132 20 134 3.41e-14 71.2
MS.gene029507.t1 MTR_1g035480 33.613 119 76 2 14 132 11 126 3.59e-14 71.2
MS.gene029507.t1 MTR_1g035440 33.010 103 68 1 17 118 12 114 2.59e-13 70.1
MS.gene029507.t1 MTR_1g035470 42.169 83 45 2 36 118 2 81 1.11e-12 65.9
MS.gene029507.t1 MTR_1g021290 33.333 129 72 3 21 136 157 284 2.05e-12 68.9
MS.gene029507.t1 MTR_1g034210 35.354 99 62 1 20 118 7 103 2.94e-12 68.2
MS.gene029507.t1 MTR_3g005440 31.765 85 58 0 34 118 34 118 3.36e-11 65.5
MS.gene029507.t1 MTR_3g005440 29.221 154 100 3 12 161 230 378 3.36e-11 65.5
MS.gene029507.t1 MTR_3g005420 31.000 100 68 1 20 118 21 120 5.07e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029507.t1 AT3G18990 32.344 337 185 11 20 316 6 339 5.48e-43 155
MS.gene029507.t1 AT3G18990 36.752 117 65 4 370 481 224 336 6.80e-11 64.3
MS.gene029507.t1 AT3G18990 32.047 337 186 11 20 316 6 339 4.65e-42 154
MS.gene029507.t1 AT3G18990 36.752 117 65 4 370 481 224 336 5.75e-11 64.7
MS.gene029507.t1 AT1G49480 31.977 172 88 7 171 316 56 224 2.31e-17 81.6
MS.gene029507.t1 AT1G49480 36.752 117 65 4 370 481 109 221 6.20e-12 65.9
MS.gene029507.t1 AT1G49480 31.977 172 88 7 171 316 56 224 2.31e-17 81.6
MS.gene029507.t1 AT1G49480 36.752 117 65 4 370 481 109 221 6.20e-12 65.9
MS.gene029507.t1 AT1G49480 31.977 172 88 7 171 316 56 224 2.31e-17 81.6
MS.gene029507.t1 AT1G49480 36.752 117 65 4 370 481 109 221 6.20e-12 65.9
MS.gene029507.t1 AT4G01580 36.538 104 66 0 19 122 29 132 9.58e-17 79.0
MS.gene029507.t1 AT4G33280 26.667 300 197 10 34 320 37 326 2.79e-16 80.5
MS.gene029507.t1 AT3G18960 34.615 104 68 0 19 122 29 132 6.55e-16 76.6
MS.gene029507.t1 AT3G18960 34.615 104 68 0 19 122 29 132 9.82e-16 76.6
MS.gene029507.t1 AT1G49475 31.667 120 77 2 19 138 33 147 2.04e-14 72.0
MS.gene029507.t1 AT3G18960 35.227 88 57 0 35 122 8 95 1.82e-11 63.2

Find 77 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACAATCCAATTGAAATTT+TGG 0.104888 1.3:-74190574 MS.gene029507:CDS
CCTAAACTTGTCCAAGTTAA+AGG 0.118978 1.3:-74190429 MS.gene029507:intron
ATCTGATAATAATTTGAAAT+TGG 0.143719 1.3:-74189881 MS.gene029507:CDS
CTCAAATTGATAGTGAAATT+TGG 0.167485 1.3:+74189207 None:intergenic
GAACTTGAAATTTGTGATTT+TGG 0.194976 1.3:+74190522 None:intergenic
GTGAGACTGTACATATTCTT+AGG 0.199034 1.3:+74191285 None:intergenic
GGAAATACATTTGACTAAAA+AGG 0.231817 1.3:-74190772 MS.gene029507:CDS
CTTGACCATGCTTCACATTC+AGG 0.239372 1.3:+74190276 None:intergenic
TATCATGACAGCAGTGAAAA+AGG 0.253877 1.3:+74190184 None:intergenic
CCTTCACCCAACTTTGTTGC+TGG 0.270614 1.3:+74188886 None:intergenic
CCTTTAACTTGGACAAGTTT+AGG 0.279816 1.3:+74190429 None:intergenic
TGCTATTGATCATCTCAAAA+AGG 0.283820 1.3:+74189848 None:intergenic
ACCCAACTTTGTTGCTGGTT+CGG 0.316172 1.3:+74188891 None:intergenic
CGAAATCGCCCTTCAGGTCT+TGG 0.340066 1.3:-74189971 MS.gene029507:CDS
TCAATTTGAGATCAAGTCAT+TGG 0.345291 1.3:-74189194 MS.gene029507:CDS
TGCTCATCCAAAATTTCAAT+TGG 0.347442 1.3:+74190567 None:intergenic
TATTTCTCAGTGAAAGCATT+TGG 0.349857 1.3:+74190849 None:intergenic
TCTGATAATAATTTGAAATT+GGG 0.355411 1.3:-74189880 MS.gene029507:CDS
GTACATATTCTTAGGGTTGC+TGG 0.358212 1.3:+74191293 None:intergenic
GACTGCAATGTTACAGTTTG+AGG 0.362858 1.3:-74188950 MS.gene029507:CDS
TTCATTCTCGAGCAAGTACT+TGG 0.373540 1.3:-74188986 MS.gene029507:CDS
AAAACTATTATGTCGTATAA+AGG 0.388718 1.3:-74189616 MS.gene029507:intron
GCAAAGCGAAATCGCCCTTC+AGG 0.399129 1.3:-74189977 MS.gene029507:CDS
AAGCACAAAATCTTCCTTGT+TGG 0.401267 1.3:+74188801 None:intergenic
GAAATTGAATATCGTGTTGA+CGG 0.403003 1.3:-74190615 MS.gene029507:CDS
TGTAGAAGAAAATAAATTGC+AGG 0.404615 1.3:-74188851 MS.gene029507:CDS
CAAAGTGGATGTGAATTGAT+TGG 0.417163 1.3:+74189236 None:intergenic
CTTCACATTCAGGCATTTAG+TGG 0.427188 1.3:+74190286 None:intergenic
ATATTTGGATTCAAAGGGGT+TGG 0.428451 1.3:-74190743 MS.gene029507:CDS
ATTTCCCATTCTTTCTCATC+GGG 0.433534 1.3:+74190789 None:intergenic
ATGGTGATATTTGGATTCAA+AGG 0.444319 1.3:-74190749 MS.gene029507:CDS
AATTTATTATACCTTTAACT+TGG 0.446187 1.3:+74190418 None:intergenic
AACTTTGTTGCTGGTTCGGA+TGG 0.454779 1.3:+74188895 None:intergenic
TCCGAACCAGCAACAAAGTT+GGG 0.458098 1.3:-74188892 MS.gene029507:CDS
TGGTGATATTTGGATTCAAA+GGG 0.458234 1.3:-74190748 MS.gene029507:CDS
GGTCTACTCTTCTTGTGAGA+AGG 0.460496 1.3:+74190543 None:intergenic
ATTCTTAGGGTTGCTGGTCA+TGG 0.460769 1.3:+74191299 None:intergenic
TTGGATTCAAAGGGGTTGGA+AGG 0.464926 1.3:-74190739 MS.gene029507:CDS
AGACTCCCGATGAGAAAGAA+TGG 0.468520 1.3:-74190794 MS.gene029507:CDS
CAATCAATTCACATCCACTT+TGG 0.477065 1.3:-74189235 MS.gene029507:CDS
TCTTGGATGATGAGAGAACT+TGG 0.477954 1.3:-74189954 MS.gene029507:CDS
TTTGAATCAGTTCATGGAGA+TGG 0.482390 1.3:-74189682 MS.gene029507:intron
ACACATTATTCATTAGATCA+TGG 0.484576 1.3:-74190708 MS.gene029507:CDS
TTCATGGAGATGGAATTAAC+TGG 0.486836 1.3:-74189672 MS.gene029507:CDS
TATTTCCCATTCTTTCTCAT+CGG 0.492052 1.3:+74190788 None:intergenic
CAATTTGAGATCAAGTCATT+GGG 0.498692 1.3:-74189193 MS.gene029507:CDS
TGAGACTGTACATATTCTTA+GGG 0.500244 1.3:+74191286 None:intergenic
GACTCCCGATGAGAAAGAAT+GGG 0.507920 1.3:-74190793 MS.gene029507:CDS
TTGGATTACCTTGTGGTGGA+AGG 0.508508 1.3:+74189773 None:intergenic
ATCCGAACCAGCAACAAAGT+TGG 0.508654 1.3:-74188893 MS.gene029507:CDS
GGATAATACATCACTTGTAC+AGG 0.514406 1.3:+74188916 None:intergenic
ACCTCAACAAATATTCAAGA+TGG 0.526205 1.3:-74191231 MS.gene029507:CDS
AATTAGTACTTTAAAAGCAT+AGG 0.530987 1.3:+74189822 None:intergenic
GCTTTCACTGAGAAATATAG+TGG 0.532968 1.3:-74190843 MS.gene029507:CDS
TCTCATCATCCAAGACCTGA+AGG 0.534348 1.3:+74189962 None:intergenic
CAACAAAGTTGGGTGAAGGT+TGG 0.542982 1.3:-74188882 MS.gene029507:CDS
TGGATTACCTTGTGGTGGAA+GGG 0.545050 1.3:+74189774 None:intergenic
GAAGAAAATAAATTGCAGGC+TGG 0.548366 1.3:-74188847 MS.gene029507:CDS
TCGGGAGTCTTGAGAAACAT+TGG 0.550403 1.3:+74190807 None:intergenic
ATTAACTGGTTAGAAACTGC+AGG 0.556059 1.3:-74189658 MS.gene029507:CDS
TCCATCTTGAATATTTGTTG+AGG 0.562475 1.3:+74191230 None:intergenic
AAAGAAACTCACTGCAGGCT+AGG 0.570791 1.3:-74189296 MS.gene029507:CDS
TTCATTAGATCATGGTCACA+TGG 0.571925 1.3:-74190700 MS.gene029507:CDS
CATCTTGGATTACCTTGTGG+TGG 0.585751 1.3:+74189769 None:intergenic
AACTCAAAGAAACTCACTGC+AGG 0.587428 1.3:-74189301 MS.gene029507:CDS
GGTGATATTTGGATTCAAAG+GGG 0.604343 1.3:-74190747 MS.gene029507:CDS
TTCATATGTTAATCAATACA+TGG 0.607228 1.3:-74190159 MS.gene029507:intron
CTCATCATCCAAGACCTGAA+GGG 0.610171 1.3:+74189963 None:intergenic
ATTGACACAAGTGAAGATGT+CGG 0.614793 1.3:-74190477 MS.gene029507:CDS
TATGTAAACCTCAAAATGAG+AGG 0.618304 1.3:+74190656 None:intergenic
CCAGCAACAAAGTTGGGTGA+AGG 0.622086 1.3:-74188886 MS.gene029507:CDS
ACGGTAATAATCAACATGAA+CGG 0.624679 1.3:-74190596 MS.gene029507:CDS
TCATTCTCGAGCAAGTACTT+GGG 0.630141 1.3:-74188985 MS.gene029507:CDS
CAACATTCCCTTCCACCACA+AGG 0.632695 1.3:-74189781 MS.gene029507:intron
TGAAGCATGGTCAAGAGCAG+AGG 0.641697 1.3:-74190268 MS.gene029507:CDS
TTGGCATACCTCAGGAACGA+AGG 0.641759 1.3:-74189325 MS.gene029507:intron
AAATGCCTGAATGTGAAGCA+TGG 0.702749 1.3:-74190281 MS.gene029507:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGATTACTAATAACTTTA+TGG + chr1.3:74190338-74190357 None:intergenic 15.0%
!! AATTTATTATACCTTTAACT+TGG + chr1.3:74189659-74189678 None:intergenic 15.0%
!!! ACTTTTGTTCAAAATTTAAA+GGG + chr1.3:74190064-74190083 None:intergenic 15.0%
!!! ATCTGATAATAATTTGAAAT+TGG - chr1.3:74190193-74190212 MS.gene029507:CDS 15.0%
!!! TAAAGTTATTAGTAATCTTT+TGG - chr1.3:74190338-74190357 MS.gene029507:intron 15.0%
!!! TAATACAAAATGTTGTTTAA+TGG - chr1.3:74190590-74190609 MS.gene029507:CDS 15.0%
!!! TACTTTTGTTCAAAATTTAA+AGG + chr1.3:74190065-74190084 None:intergenic 15.0%
!!! TCTGATAATAATTTGAAATT+GGG - chr1.3:74190194-74190213 MS.gene029507:CDS 15.0%
!! AAAACTATTATGTCGTATAA+AGG - chr1.3:74190458-74190477 MS.gene029507:CDS 20.0%
!! AATCACTAGATATATGTATT+TGG + chr1.3:74190950-74190969 None:intergenic 20.0%
!! AGGTATAATAAATTCATGAT+TGG - chr1.3:74189665-74189684 MS.gene029507:CDS 20.0%
!! ATCATACAGTACTTAAATTT+CGG + chr1.3:74188935-74188954 None:intergenic 20.0%
!! TTCATATGTTAATCAATACA+TGG - chr1.3:74189915-74189934 MS.gene029507:CDS 20.0%
!!! AATTAGTACTTTAAAAGCAT+AGG + chr1.3:74190255-74190274 None:intergenic 20.0%
!!! AATTGATTATATGCTTTTGT+TGG - chr1.3:74190730-74190749 MS.gene029507:CDS 20.0%
!!! TCAATTCTCAATTTTTTAAG+TGG + chr1.3:74189582-74189601 None:intergenic 20.0%
!!! TTTTCTTAGAAAGATACATA+TGG + chr1.3:74189054-74189073 None:intergenic 20.0%
!!! TTTTGAACAAAAGTATTTGA+AGG - chr1.3:74190070-74190089 MS.gene029507:intron 20.0%
! AAGAAAGAAAGAAAGAAAGA+AGG + chr1.3:74188889-74188908 None:intergenic 25.0%
! ACACATTATTCATTAGATCA+TGG - chr1.3:74189366-74189385 MS.gene029507:intron 25.0%
! ATACATTTGACTAAAAAGGA+TGG - chr1.3:74189306-74189325 MS.gene029507:CDS 25.0%
! ATTAAAAGTTCAAGTGAGTT+AGG + chr1.3:74189012-74189031 None:intergenic 25.0%
! CATAAATACATATTCCTTAC+TGG + chr1.3:74190918-74190937 None:intergenic 25.0%
! GGAAATACATTTGACTAAAA+AGG - chr1.3:74189302-74189321 MS.gene029507:CDS 25.0%
! TGTAGAAGAAAATAAATTGC+AGG - chr1.3:74191223-74191242 MS.gene029507:intron 25.0%
! TGTATGAGAAAAATTAGTAG+CGG - chr1.3:74190155-74190174 MS.gene029507:intron 25.0%
!! GAACAATCCAATTGAAATTT+TGG - chr1.3:74189500-74189519 MS.gene029507:intron 25.0%
!! GAACTTGAAATTTGTGATTT+TGG + chr1.3:74189555-74189574 None:intergenic 25.0%
!! GTTTCTTTTACAGTTAGTTA+GGG + chr1.3:74191043-74191062 None:intergenic 25.0%
!! TGTTTCTTTTACAGTTAGTT+AGG + chr1.3:74191044-74191063 None:intergenic 25.0%
!! TTGTTATGTTATGTTTTACG+CGG - chr1.3:74188961-74188980 MS.gene029507:CDS 25.0%
!!! CTCAAATTGATAGTGAAATT+TGG + chr1.3:74190870-74190889 None:intergenic 25.0%
ACCTCAACAAATATTCAAGA+TGG - chr1.3:74188843-74188862 MS.gene029507:CDS 30.0%
ACGGTAATAATCAACATGAA+CGG - chr1.3:74189478-74189497 MS.gene029507:intron 30.0%
ATGGTGATATTTGGATTCAA+AGG - chr1.3:74189325-74189344 MS.gene029507:intron 30.0%
ATTCAACTTCAAATTCCCAA+AGG + chr1.3:74190511-74190530 None:intergenic 30.0%
CAAAATTTAAAGGGACATAC+TGG + chr1.3:74190055-74190074 None:intergenic 30.0%
CTAAAAAGGATGGTGATATT+TGG - chr1.3:74189316-74189335 MS.gene029507:intron 30.0%
CTAGTGATTATGCTTAAAAC+TGG - chr1.3:74190961-74190980 MS.gene029507:intron 30.0%
CTTTATGGAAAAAACCATCT+TGG + chr1.3:74190323-74190342 None:intergenic 30.0%
GAAATTGAATATCGTGTTGA+CGG - chr1.3:74189459-74189478 MS.gene029507:intron 30.0%
TACAGTTTGAGGAAAAATTG+TGG - chr1.3:74191135-74191154 MS.gene029507:intron 30.0%
TATGTAAACCTCAAAATGAG+AGG + chr1.3:74189421-74189440 None:intergenic 30.0%
TATTTCCCATTCTTTCTCAT+CGG + chr1.3:74189289-74189308 None:intergenic 30.0%
TGAGACTGTACATATTCTTA+GGG + chr1.3:74188791-74188810 None:intergenic 30.0%
TGCTATTGATCATCTCAAAA+AGG + chr1.3:74190229-74190248 None:intergenic 30.0%
TGCTCATCCAAAATTTCAAT+TGG + chr1.3:74189510-74189529 None:intergenic 30.0%
TGGTGATATTTGGATTCAAA+GGG - chr1.3:74189326-74189345 MS.gene029507:intron 30.0%
TTCAACTTCAAATTCCCAAA+GGG + chr1.3:74190510-74190529 None:intergenic 30.0%
! AACATTGCAGTCTTCTTTTT+GGG + chr1.3:74191116-74191135 None:intergenic 30.0%
! CAATTTGAGATCAAGTCATT+GGG - chr1.3:74190881-74190900 MS.gene029507:intron 30.0%
! CTCTTCTGAGAAATTGAATA+TGG + chr1.3:74189758-74189777 None:intergenic 30.0%
! CTTAGCTTCAGAATTTTTGA+AGG + chr1.3:74190811-74190830 None:intergenic 30.0%
! CTTGATGTTCATATTTTCAG+AGG - chr1.3:74191293-74191312 MS.gene029507:CDS 30.0%
! TAACATTGCAGTCTTCTTTT+TGG + chr1.3:74191117-74191136 None:intergenic 30.0%
! TCAATTTGAGATCAAGTCAT+TGG - chr1.3:74190880-74190899 MS.gene029507:intron 30.0%
! TCCATCTTGAATATTTGTTG+AGG + chr1.3:74188847-74188866 None:intergenic 30.0%
! TTTAGGAATGTTTTGCGATT+TGG + chr1.3:74189631-74189650 None:intergenic 30.0%
!! TATTTCTCAGTGAAAGCATT+TGG + chr1.3:74189228-74189247 None:intergenic 30.0%
!!! GAAATTTGGTTTTTCCAAAG+TGG + chr1.3:74190856-74190875 None:intergenic 30.0%
AAGCACAAAATCTTCCTTGT+TGG + chr1.3:74191276-74191295 None:intergenic 35.0%
AGAAGGAAAGAATGCTTACA+AGG + chr1.3:74188872-74188891 None:intergenic 35.0%
ATATTTGGATTCAAAGGGGT+TGG - chr1.3:74189331-74189350 MS.gene029507:intron 35.0%
ATCAAGCAGTATTGTCAAGA+TGG - chr1.3:74190529-74190548 MS.gene029507:CDS 35.0%
ATCATGACAGCAGTGAAAAA+GGG + chr1.3:74189892-74189911 None:intergenic 35.0%
ATTAACTGGTTAGAAACTGC+AGG - chr1.3:74190416-74190435 MS.gene029507:intron 35.0%
ATTGACACAAGTGAAGATGT+CGG - chr1.3:74189597-74189616 MS.gene029507:intron 35.0%
ATTTCCCATTCTTTCTCATC+GGG + chr1.3:74189288-74189307 None:intergenic 35.0%
CAAAGTGGATGTGAATTGAT+TGG + chr1.3:74190841-74190860 None:intergenic 35.0%
CAATCAATTCACATCCACTT+TGG - chr1.3:74190839-74190858 MS.gene029507:CDS 35.0%
CCTAAACTTGTCCAAGTTAA+AGG - chr1.3:74189645-74189664 MS.gene029507:CDS 35.0%
CGTGAGTCGTAAAAAAATAG+AGG + chr1.3:74190639-74190658 None:intergenic 35.0%
GAAGAAAATAAATTGCAGGC+TGG - chr1.3:74191227-74191246 MS.gene029507:CDS 35.0%
GAAGGAAAGAATGCTTACAA+GGG + chr1.3:74188871-74188890 None:intergenic 35.0%
GATTATGCTTAAAACTGGAG+TGG - chr1.3:74190966-74190985 MS.gene029507:intron 35.0%
GCTTTCACTGAGAAATATAG+TGG - chr1.3:74189231-74189250 MS.gene029507:CDS 35.0%
GGATAATACATCACTTGTAC+AGG + chr1.3:74191161-74191180 None:intergenic 35.0%
GGTGATATTTGGATTCAAAG+GGG - chr1.3:74189327-74189346 MS.gene029507:intron 35.0%
GTGAGACTGTACATATTCTT+AGG + chr1.3:74188792-74188811 None:intergenic 35.0%
TATCATGACAGCAGTGAAAA+AGG + chr1.3:74189893-74189912 None:intergenic 35.0%
TCATCCTTTGAATCAGTTCA+TGG - chr1.3:74190386-74190405 MS.gene029507:intron 35.0%
TTCATGGAGATGGAATTAAC+TGG - chr1.3:74190402-74190421 MS.gene029507:intron 35.0%
TTCATTAGATCATGGTCACA+TGG - chr1.3:74189374-74189393 MS.gene029507:intron 35.0%
TTTGAATCAGTTCATGGAGA+TGG - chr1.3:74190392-74190411 MS.gene029507:intron 35.0%
! ATCTCCATGAACTGATTCAA+AGG + chr1.3:74190393-74190412 None:intergenic 35.0%
! TCAGAAAACCTCTCATTTTG+AGG - chr1.3:74189410-74189429 MS.gene029507:intron 35.0%
! TGAGAAAAATTAGTAGCGGA+TGG - chr1.3:74190159-74190178 MS.gene029507:intron 35.0%
!! CCTTTAACTTGGACAAGTTT+AGG + chr1.3:74189648-74189667 None:intergenic 35.0%
!! TCAGAATTTTTGAAGGAGCA+TGG + chr1.3:74190804-74190823 None:intergenic 35.0%
AAATGCCTGAATGTGAAGCA+TGG - chr1.3:74189793-74189812 MS.gene029507:CDS 40.0%
AACCATCTTGGATTACCTTG+TGG + chr1.3:74190311-74190330 None:intergenic 40.0%
AACTCAAAGAAACTCACTGC+AGG - chr1.3:74190773-74190792 MS.gene029507:CDS 40.0%
CTTCACATTCAGGCATTTAG+TGG + chr1.3:74189791-74189810 None:intergenic 40.0%
GACTGCAATGTTACAGTTTG+AGG - chr1.3:74191124-74191143 MS.gene029507:intron 40.0%
GTACATATTCTTAGGGTTGC+TGG + chr1.3:74188784-74188803 None:intergenic 40.0%
TCATTCTCGAGCAAGTACTT+GGG - chr1.3:74191089-74191108 MS.gene029507:intron 40.0%
TCTTGGATGATGAGAGAACT+TGG - chr1.3:74190120-74190139 MS.gene029507:intron 40.0%
TTCATTCTCGAGCAAGTACT+TGG - chr1.3:74191088-74191107 MS.gene029507:intron 40.0%
!! TGTTTTTGTGCTTGCCAACA+AGG - chr1.3:74191259-74191278 MS.gene029507:CDS 40.0%
AAAGAAACTCACTGCAGGCT+AGG - chr1.3:74190778-74190797 MS.gene029507:CDS 45.0%
AGACTCCCGATGAGAAAGAA+TGG - chr1.3:74189280-74189299 MS.gene029507:CDS 45.0%
AGTTAGGTCCTGAGGATACA+AGG + chr1.3:74188996-74189015 None:intergenic 45.0%
ATCCGAACCAGCAACAAAGT+TGG - chr1.3:74191181-74191200 MS.gene029507:intron 45.0%
ATCGTTGTTGTGACTCCCTT+TGG - chr1.3:74190492-74190511 MS.gene029507:CDS 45.0%
ATTCTTAGGGTTGCTGGTCA+TGG + chr1.3:74188778-74188797 None:intergenic 45.0%
CAACAAAGTTGGGTGAAGGT+TGG - chr1.3:74191192-74191211 MS.gene029507:intron 45.0%
CACCACAAGGTAATCCAAGA+TGG - chr1.3:74190306-74190325 MS.gene029507:intron 45.0%
CATCTTGGATTACCTTGTGG+TGG + chr1.3:74190308-74190327 None:intergenic 45.0%
CTCATCATCCAAGACCTGAA+GGG + chr1.3:74190114-74190133 None:intergenic 45.0%
CTTGACCATGCTTCACATTC+AGG + chr1.3:74189801-74189820 None:intergenic 45.0%
GACTCCCGATGAGAAAGAAT+GGG - chr1.3:74189281-74189300 MS.gene029507:CDS 45.0%
GATTCCTTCCTTGTATCCTC+AGG - chr1.3:74188985-74189004 MS.gene029507:CDS 45.0%
GGGATGTTTACAGACCAGTA+AGG - chr1.3:74190901-74190920 MS.gene029507:intron 45.0%
GGTCTACTCTTCTTGTGAGA+AGG + chr1.3:74189534-74189553 None:intergenic 45.0%
TCCGAACCAGCAACAAAGTT+GGG - chr1.3:74191182-74191201 MS.gene029507:intron 45.0%
TCGGGAGTCTTGAGAAACAT+TGG + chr1.3:74189270-74189289 None:intergenic 45.0%
TCGTTGTTGTGACTCCCTTT+GGG - chr1.3:74190493-74190512 MS.gene029507:CDS 45.0%
TCTCATCATCCAAGACCTGA+AGG + chr1.3:74190115-74190134 None:intergenic 45.0%
TTCAAGTGAGTTAGGTCCTG+AGG + chr1.3:74189004-74189023 None:intergenic 45.0%
TTGAGTTTCCTTCGTTCCTG+AGG + chr1.3:74190760-74190779 None:intergenic 45.0%
TTGGATTCAAAGGGGTTGGA+AGG - chr1.3:74189335-74189354 MS.gene029507:intron 45.0%
! ACCCAACTTTGTTGCTGGTT+CGG + chr1.3:74191186-74191205 None:intergenic 45.0%
! TGCTTTTGTTGGCATACCTC+AGG - chr1.3:74190741-74190760 MS.gene029507:CDS 45.0%
! TGGATTACCTTGTGGTGGAA+GGG + chr1.3:74190303-74190322 None:intergenic 45.0%
! TTGGATTACCTTGTGGTGGA+AGG + chr1.3:74190304-74190323 None:intergenic 45.0%
!! AACTTTGTTGCTGGTTCGGA+TGG + chr1.3:74191182-74191201 None:intergenic 45.0%
AGGTCCTGAGGATACAAGGA+AGG + chr1.3:74188992-74189011 None:intergenic 50.0%
CAACATTCCCTTCCACCACA+AGG - chr1.3:74190293-74190312 MS.gene029507:CDS 50.0%
CCAGCAACAAAGTTGGGTGA+AGG - chr1.3:74191188-74191207 MS.gene029507:intron 50.0%
CCTTCACCCAACTTTGTTGC+TGG + chr1.3:74191191-74191210 None:intergenic 50.0%
TGAAGCATGGTCAAGAGCAG+AGG - chr1.3:74189806-74189825 MS.gene029507:CDS 50.0%
TTGGCATACCTCAGGAACGA+AGG - chr1.3:74190749-74190768 MS.gene029507:CDS 50.0%
CGAAATCGCCCTTCAGGTCT+TGG - chr1.3:74190103-74190122 MS.gene029507:intron 55.0%
GCAAAGCGAAATCGCCCTTC+AGG - chr1.3:74190097-74190116 MS.gene029507:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 74188771 74191325 74188771 ID=MS.gene029507
chr1.3 mRNA 74188771 74191325 74188771 ID=MS.gene029507.t1;Parent=MS.gene029507
chr1.3 exon 74191224 74191325 74191224 ID=MS.gene029507.t1.exon1;Parent=MS.gene029507.t1
chr1.3 CDS 74191224 74191325 74191224 ID=cds.MS.gene029507.t1;Parent=MS.gene029507.t1
chr1.3 exon 74190430 74190877 74190430 ID=MS.gene029507.t1.exon2;Parent=MS.gene029507.t1
chr1.3 CDS 74190430 74190877 74190430 ID=cds.MS.gene029507.t1;Parent=MS.gene029507.t1
chr1.3 exon 74190160 74190323 74190160 ID=MS.gene029507.t1.exon3;Parent=MS.gene029507.t1
chr1.3 CDS 74190160 74190323 74190160 ID=cds.MS.gene029507.t1;Parent=MS.gene029507.t1
chr1.3 exon 74189782 74190040 74189782 ID=MS.gene029507.t1.exon4;Parent=MS.gene029507.t1
chr1.3 CDS 74189782 74190040 74189782 ID=cds.MS.gene029507.t1;Parent=MS.gene029507.t1
chr1.3 exon 74189617 74189694 74189617 ID=MS.gene029507.t1.exon5;Parent=MS.gene029507.t1
chr1.3 CDS 74189617 74189694 74189617 ID=cds.MS.gene029507.t1;Parent=MS.gene029507.t1
chr1.3 exon 74189179 74189333 74189179 ID=MS.gene029507.t1.exon6;Parent=MS.gene029507.t1
chr1.3 CDS 74189179 74189333 74189179 ID=cds.MS.gene029507.t1;Parent=MS.gene029507.t1
chr1.3 exon 74188771 74189019 74188771 ID=MS.gene029507.t1.exon7;Parent=MS.gene029507.t1
chr1.3 CDS 74188771 74189019 74188771 ID=cds.MS.gene029507.t1;Parent=MS.gene029507.t1
Gene Sequence

>MS.gene029507

ATGTCCATGACCAGCAACCCTAAGAATATGTACAGTCTCACTGCTTCTGCTATTCGTTTCTTTAAGATTGTTACCTCAACAAATATTCAAGATGGAACCCTTGTAAGCATTCTTTCCTTCTTTCTTTCTTTCTTTCTTTCGATTTTTTAACTTTTGAACGACCGAAATTTAAGTACTGTATGATAGTTGTTTGTTATGTTATGTTTTACGCGGAGATTCCTTCCTTGTATCCTCAGGACCTAACTCACTTGAACTTTTAATTATAAACAAAATATATAAGCCATATGTATCTTTCTAAGAAAAAACAATTTGATTGTTTCTTATAAAAAAAGACTAGAGCTAGAACTTTATACATTTAGATATGACTTCTACTAAGTGCAAGTAAAATGAAAAAAAAACATAATATCGAGTTTCTGTGCATGCTAACATAAATTTCAATGTACTGCAGAGAATTCCAAATGCTTTCACTGAGAAATATAGTGGTGATTTATCAAAGCCAATGTTTCTCAAGACTCCCGATGAGAAAGAATGGGAAATACATTTGACTAAAAAGGATGGTGATATTTGGATTCAAAGGGGTTGGAAGGAATTTGCTACACATTATTCATTAGATCATGGTCACATGGTTGTGTTTCAATATCAGAAAACCTCTCATTTTGAGGTTTACATATTTGACAAGAGTACTTTTGAAATTGAATATCGTGTTGACGGTAATAATCAACATGAACGGAACAATCCAATTGAAATTTTGGATGAGCAACCTTCTCACAAGAAGAGTAGACCAAAATCACAAATTTCAAGTTCTCAACCACTTAAAAAATTGAGAATTGACACAAGTGAAGATGTCGGAACAAGCTCCAAATCGCAAAACATTCCTAAACTTGTCCAAGTTAAAGGTATAATAAATTCATGATTGGATTAATCTCTATCATTTCATTTATCTAATCAAGATTTTGATTTTTGATGTTGATTTTTCATTACATACCATATTCAATTTCTCAGAAGAGATTGATTCTACCACTAAATGCCTGAATGTGAAGCATGGTCAAGAGCAGAGGAATTCAACTGCTAAAATTCTTGAAGCTTTAAACAAAGCAAAAAACTATGAATCTAACAATCCCTTTTTCACTGCTGTCATGATACATTCATATGTTAATCAATACATGGTGAGTCTCTGAACAGCTTCAATTTTTTATGTTAAGATTGTTTATTATCTTTTTTTTTAAGCTAATGTATATCTTAAGTAGTTACTACATTTTCTAACTGTCACAAAATGAAAATCCAGTATGTCCCTTTAAATTTTGAACAAAAGTATTTGAAGGAACAGCAAAGCGAAATCGCCCTTCAGGTCTTGGATGATGAGAGAACTTGGATTGTTAAATATTGTATGAGAAAAATTAGTAGCGGATGGAAAACATTTGTATCTGATAATAATTTGAAATTGGGAGATGTTTGCCTTTTTGAGATGATCAATAGCAAATCCTATGCTTTTAAAGTACTAATTTTTCGAGTTGACGAAGAACAACATTCCCTTCCACCACAAGGTAATCCAAGATGGTTTTTTCCATAAAGTTATTAGTAATCTTTTGGATCTGCACGATCATGATTATATTTTTCATCCTTTGAATCAGTTCATGGAGATGGAATTAACTGGTTAGAAACTGCAGGAATCACAGAAGTTGAAAGTAAAACTATTATGTCGTATAAAGGTAAATCTCAACATCGTTGTTGTGACTCCCTTTGGGAATTTGAAGTTGAATCAAGCAGTATTGTCAAGATGGAATTTGAACAAATCACGATTGTTCTACGATACACTATTTAATACAAAATGTTGTTTAATGGCACTACAATGTAGCTTGAATAATCCTCTATTTTTTTACGACTCACGATTGACAACACTAGAATCAAGAAAAAAAATGCAACTATTGAAGTTTTACAAATAGACATAGCTTATTTGTAAATTGATTATATGCTTTTGTTGGCATACCTCAGGAACGAAGGAAACTCAAAGAAACTCACTGCAGGCTAGGCCATGCTCCTTCAAAAATTCTGAAGCTAAGAAAGAAGCCAATCAATTCACATCCACTTTGGAAAAACCAAATTTCACTATCAATTTGAGATCAAGTCATTGGGATGTTTACAGACCAGTAAGGAATATGTATTTATGATATTTGAACCAAATACATATATCTAGTGATTATGCTTAAAACTGGAGTGGTATTTGTTTCATGTCATGCATTCTAGTAGCAAGTATGCAGTTATTGACATACCCTAACTAACTGTAAAAGAAACACTAATTTGCGCAGCGTGTACGAAATTCATTCTCGAGCAAGTACTTGGGTCCCAAAAAGAAGACTGCAATGTTACAGTTTGAGGAAAAATTGTGGCCTGTACAAGTGATGTATTATCCATCCGAACCAGCAACAAAGTTGGGTGAAGGTTGGAGTCTGTTTGTAGAAGAAAATAAATTGCAGGCTGGAGATGTATGTGTTTTTGTGCTTGCCAACAAGGAAGATTTTGTGCTTGATGTTCATATTTTCAGAGGACGCAGTTAG
Protein sequence

>MS.gene029507.t1

MSMTSNPKNMYSLTASAIRFFKIVTSTNIQDGTLRIPNAFTEKYSGDLSKPMFLKTPDEKEWEIHLTKKDGDIWIQRGWKEFATHYSLDHGHMVVFQYQKTSHFEVYIFDKSTFEIEYRVDGNNQHERNNPIEILDEQPSHKKSRPKSQISSSQPLKKLRIDTSEDVGTSSKSQNIPKLVQVKEEIDSTTKCLNVKHGQEQRNSTAKILEALNKAKNYESNNPFFTAVMIHSYVNQYMYVPLNFEQKYLKEQQSEIALQVLDDERTWIVKYCMRKISSGWKTFVSDNNLKLGDVCLFEMINSKSYAFKVLIFRVDEEQHSLPPQVHGDGINWLETAGITEVESKTIMSYKGTKETQRNSLQARPCSFKNSEAKKEANQFTSTLEKPNFTINLRSSHWDVYRPRVRNSFSSKYLGPKKKTAMLQFEEKLWPVQVMYYPSEPATKLGEGWSLFVEENKLQAGDVCVFVLANKEDFVLDVHIFRGRS