AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029779

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029779.t1 MTR_1g063160 92.737 179 13 0 1 179 1 179 1.00e-120 338
MS.gene029779.t1 MTR_1g047550 80.447 179 35 0 1 179 1 179 3.04e-103 294
MS.gene029779.t1 MTR_1g054265 81.548 168 31 0 1 168 1 168 4.35e-100 286
MS.gene029779.t1 MTR_8g079502 79.042 167 35 0 1 167 1 167 4.76e-94 271
MS.gene029779.t1 MTR_4g131030 70.213 188 39 1 1 171 1 188 1.55e-90 263
MS.gene029779.t1 MTR_8g051580 58.286 175 73 0 1 175 1 175 2.06e-71 214
MS.gene029779.t1 MTR_8g046350 54.167 168 71 2 1 168 1 162 1.19e-55 173
MS.gene029779.t1 MTR_4g094632 40.244 164 86 3 1 164 1 152 1.34e-30 109
MS.gene029779.t1 MTR_3g080940 38.824 170 85 5 1 157 8 171 1.44e-28 105
MS.gene029779.t1 MTR_3g052870 43.571 140 72 5 2 136 9 146 6.84e-27 101
MS.gene029779.t1 MTR_5g045560 33.533 167 93 3 1 152 8 171 3.81e-25 97.4
MS.gene029779.t1 MTR_3g052920 46.491 114 56 3 2 112 9 120 8.46e-25 96.7
MS.gene029779.t1 MTR_1g106070 59.420 69 28 0 2 70 9 77 1.14e-24 95.1
MS.gene029779.t1 MTR_1g105920 46.491 114 56 3 2 112 9 120 1.36e-24 96.3
MS.gene029779.t1 MTR_1g105910 46.491 114 56 3 2 112 9 120 2.41e-24 95.5
MS.gene029779.t1 MTR_4g094638 39.583 144 80 3 1 140 1 141 4.16e-24 93.2
MS.gene029779.t1 MTR_2g030740 45.614 114 57 3 2 112 9 120 9.63e-24 94.0
MS.gene029779.t1 MTR_1g012570 42.342 111 61 2 2 110 9 118 1.76e-23 93.2
MS.gene029779.t1 MTR_3g030770 53.247 77 36 0 2 78 9 85 1.87e-23 92.8
MS.gene029779.t1 MTR_1g108510 53.247 77 36 0 2 78 9 85 2.31e-23 92.8
MS.gene029779.t1 MTR_8g043650 45.614 114 57 3 2 112 9 120 2.83e-23 92.8
MS.gene029779.t1 MTR_0121s0100 45.098 102 52 2 2 100 9 109 5.52e-23 89.0
MS.gene029779.t1 MTR_1g075600 46.226 106 55 2 2 107 9 112 1.41e-22 90.9
MS.gene029779.t1 MTR_1g077360 41.284 109 58 2 2 108 9 113 1.44e-22 90.9
MS.gene029779.t1 MTR_2g093190 45.098 102 52 2 2 100 9 109 6.58e-22 89.0
MS.gene029779.t1 MTR_1g108580 52.055 73 35 0 2 74 9 81 1.33e-21 88.2
MS.gene029779.t1 MTR_3g030780 48.718 78 40 0 2 79 9 86 1.45e-21 85.5
MS.gene029779.t1 MTR_5g053390 53.623 69 32 0 2 70 9 77 2.68e-21 87.4
MS.gene029779.t1 MTR_2g085250 50.649 77 37 1 2 78 9 84 2.88e-21 87.4
MS.gene029779.t1 MTR_2g085280 50.649 77 37 1 2 78 9 84 2.91e-21 87.4
MS.gene029779.t1 MTR_8g086290 35.252 139 75 4 2 138 12 137 5.95e-21 85.1
MS.gene029779.t1 MTR_0121s0080 44.554 101 54 1 2 100 9 109 6.97e-21 86.3
MS.gene029779.t1 MTR_2g105290 43.750 96 48 2 1 94 11 102 2.61e-20 83.6
MS.gene029779.t1 MTR_5g055100 40.566 106 61 2 2 107 9 112 1.18e-19 83.2
MS.gene029779.t1 MTR_7g028448 40.152 132 63 5 17 140 27 150 1.75e-19 81.3
MS.gene029779.t1 MTR_4g036915 40.152 132 63 5 17 140 27 150 1.75e-19 81.3
MS.gene029779.t1 MTR_0003s0590 50.725 69 34 0 1 69 1 69 3.51e-19 82.0
MS.gene029779.t1 MTR_1g105905 57.812 64 26 1 18 80 8 71 2.01e-18 79.3
MS.gene029779.t1 MTR_7g062350 58.065 62 26 0 18 79 37 98 2.34e-18 79.7
MS.gene029779.t1 MTR_5g066180 49.296 71 36 0 1 71 1 71 4.32e-18 78.6
MS.gene029779.t1 MTR_1g053070 47.826 69 36 0 1 69 1 69 1.40e-17 77.8
MS.gene029779.t1 MTR_5g066960 53.333 60 28 0 1 60 1 60 3.06e-17 72.4
MS.gene029779.t1 MTR_3g452380 50.725 69 34 0 1 69 16 84 8.42e-17 75.5
MS.gene029779.t1 MTR_2g009890 50.725 69 34 0 1 69 1 69 8.90e-17 76.3
MS.gene029779.t1 MTR_8g033270 44.737 76 42 0 1 76 1 76 1.02e-16 75.5
MS.gene029779.t1 MTR_6g464720 36.232 138 80 4 1 134 1 134 1.31e-16 75.1
MS.gene029779.t1 MTR_3g005530 47.826 69 36 0 1 69 1 69 1.35e-16 74.7
MS.gene029779.t1 MTR_4g093970 40.000 115 46 3 1 97 27 136 2.13e-16 74.3
MS.gene029779.t1 MTR_1g101970 46.479 71 38 0 1 71 1 71 2.70e-16 73.2
MS.gene029779.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 3.79e-16 73.6
MS.gene029779.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 3.93e-16 73.6
MS.gene029779.t1 MTR_7g075870 36.538 104 63 1 1 104 1 101 4.26e-16 73.2
MS.gene029779.t1 MTR_8g087860 37.736 106 63 1 1 106 17 119 4.29e-16 73.6
MS.gene029779.t1 MTR_4g102530 46.377 69 37 0 1 69 1 69 6.29e-16 72.4
MS.gene029779.t1 MTR_8g033220 47.826 69 36 0 1 69 1 69 6.57e-16 72.8
MS.gene029779.t1 MTR_8g033220 47.826 69 36 0 1 69 1 69 7.42e-16 72.8
MS.gene029779.t1 MTR_2g017865 47.826 69 36 0 1 69 16 84 9.20e-16 73.2
MS.gene029779.t1 MTR_5g031000 47.826 69 36 0 1 69 1 69 1.14e-15 72.4
MS.gene029779.t1 MTR_7g075870 53.448 58 27 0 1 58 1 58 1.17e-15 72.0
MS.gene029779.t1 MTR_5g031000 47.826 69 36 0 1 69 1 69 1.28e-15 72.0
MS.gene029779.t1 MTR_4g127140 49.296 71 36 0 1 71 11 81 2.55e-15 70.5
MS.gene029779.t1 MTR_2g461710 49.123 57 29 0 1 57 1 57 3.03e-15 67.0
MS.gene029779.t1 MTR_1g108500 65.217 46 16 0 18 63 113 158 4.28e-15 72.0
MS.gene029779.t1 MTR_5g046790 49.123 57 29 0 1 57 1 57 4.46e-15 70.5
MS.gene029779.t1 MTR_1g038300 46.479 71 36 2 1 69 1 71 5.19e-15 70.5
MS.gene029779.t1 MTR_3g113030 48.387 62 32 0 1 62 1 62 7.13e-15 70.1
MS.gene029779.t1 MTR_4g093030 54.386 57 26 0 1 57 1 57 8.27e-15 68.6
MS.gene029779.t1 MTR_5g046870 50.877 57 28 0 1 57 1 57 8.88e-15 67.4
MS.gene029779.t1 MTR_8g066260 37.755 98 53 2 1 90 1 98 9.47e-15 70.1
MS.gene029779.t1 MTR_3g067910 38.202 89 50 1 18 101 6 94 1.06e-14 67.0
MS.gene029779.t1 MTR_3g067875 58.333 48 20 0 18 65 8 55 1.16e-14 65.9
MS.gene029779.t1 MTR_4g109830 41.429 70 40 1 1 69 1 70 1.18e-14 69.7
MS.gene029779.t1 MTR_7g016600 50.877 57 28 0 1 57 1 57 1.43e-14 69.7
MS.gene029779.t1 MTR_4g036050 43.836 73 40 1 1 72 1 73 2.11e-14 68.2
MS.gene029779.t1 MTR_4g036050 43.836 73 40 1 1 72 1 73 2.15e-14 68.6
MS.gene029779.t1 MTR_4g036050 43.836 73 40 1 1 72 1 73 2.20e-14 67.8
MS.gene029779.t1 MTR_4g036050 43.836 73 40 1 1 72 1 73 2.36e-14 68.2
MS.gene029779.t1 MTR_3g084980 52.632 57 27 0 1 57 1 57 3.36e-14 68.6
MS.gene029779.t1 MTR_4g084740 45.205 73 39 1 1 72 1 73 3.57e-14 69.3
MS.gene029779.t1 MTR_7g016630 40.000 70 41 1 1 69 1 70 4.10e-14 68.6
MS.gene029779.t1 MTR_5g032150 49.123 57 29 0 1 57 1 57 4.46e-14 68.2
MS.gene029779.t1 MTR_3g102570 42.466 73 41 1 1 72 1 73 4.48e-14 68.9
MS.gene029779.t1 MTR_8g097090 50.877 57 28 0 1 57 1 57 4.58e-14 68.2
MS.gene029779.t1 MTR_5g032520 49.123 57 29 0 1 57 1 57 5.08e-14 67.8
MS.gene029779.t1 MTR_6g015975 50.877 57 28 0 1 57 1 57 5.93e-14 68.2
MS.gene029779.t1 MTR_1g029670 36.923 65 41 0 1 65 1 65 9.34e-14 66.2
MS.gene029779.t1 MTR_3g088615 38.462 65 40 0 1 65 1 65 1.02e-13 66.2
MS.gene029779.t1 MTR_4g109810 49.123 57 29 0 1 57 1 57 1.09e-13 67.0
MS.gene029779.t1 MTR_7g075850 55.102 49 22 0 1 49 1 49 1.45e-13 67.0
MS.gene029779.t1 MTR_3g109930 42.466 73 42 0 1 73 1 73 1.48e-13 65.5
MS.gene029779.t1 MTR_5g041650 51.852 54 26 0 1 54 38 91 2.06e-13 67.4
MS.gene029779.t1 MTR_1g041615 65.909 44 15 0 15 58 19 62 3.29e-13 63.9
MS.gene029779.t1 MTR_4g108720 37.662 77 46 1 1 75 1 77 7.15e-12 63.2
MS.gene029779.t1 MTR_8g022970 42.254 71 41 0 3 73 19 89 2.85e-11 59.7
MS.gene029779.t1 MTR_3g067870 48.077 52 27 0 18 69 92 143 4.16e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029779.t1 AT2G34440 43.275 171 87 4 1 161 1 171 2.46e-37 127
MS.gene029779.t1 AT3G66656 40.678 177 90 3 1 162 1 177 1.35e-30 110
MS.gene029779.t1 AT5G60440 39.490 157 76 2 2 154 7 148 8.30e-29 108
MS.gene029779.t1 AT2G24840 32.984 191 86 4 1 167 62 234 9.74e-29 107
MS.gene029779.t1 AT1G01530 38.129 139 82 2 1 139 6 140 2.18e-21 87.8
MS.gene029779.t1 AT5G13790 43.564 101 45 2 1 100 1 90 3.28e-20 85.1
MS.gene029779.t1 AT5G13790 50.725 69 34 0 1 69 1 69 5.19e-19 82.0
MS.gene029779.t1 AT3G61120 49.275 69 35 0 1 69 1 69 1.32e-18 80.5
MS.gene029779.t1 AT4G36590 55.738 61 27 0 2 62 7 67 1.95e-18 80.1
MS.gene029779.t1 AT3G57230 49.275 69 35 0 1 69 1 69 1.99e-18 77.8
MS.gene029779.t1 AT1G65360 52.381 63 30 0 1 63 6 68 2.17e-18 79.7
MS.gene029779.t1 AT3G57390 49.275 69 35 0 1 69 1 69 4.88e-18 78.6
MS.gene029779.t1 AT4G37940 50.725 69 34 0 1 69 1 69 8.28e-18 78.2
MS.gene029779.t1 AT3G57230 49.275 69 35 0 1 69 1 69 8.70e-18 78.2
MS.gene029779.t1 AT3G57230 49.275 69 35 0 1 69 1 69 8.70e-18 78.2
MS.gene029779.t1 AT3G57390 49.275 69 35 0 1 69 1 69 9.00e-18 78.6
MS.gene029779.t1 AT1G47760 53.333 60 28 0 1 60 1 60 9.16e-18 77.0
MS.gene029779.t1 AT3G04100 37.681 138 72 3 2 137 14 139 9.73e-18 77.4
MS.gene029779.t1 AT4G37940 50.725 69 34 0 1 69 1 69 1.01e-17 77.4
MS.gene029779.t1 AT2G45660 35.185 108 67 1 1 108 1 105 1.27e-17 75.9
MS.gene029779.t1 AT4G37940 50.725 69 34 0 1 69 1 69 2.14e-17 75.9
MS.gene029779.t1 AT4G22950 47.826 69 36 0 1 69 1 69 2.58e-17 75.5
MS.gene029779.t1 AT1G28460 31.646 158 87 2 2 141 8 162 2.71e-17 75.9
MS.gene029779.t1 AT2G45650 47.826 69 36 0 1 69 1 69 3.56e-17 76.6
MS.gene029779.t1 AT5G51870 35.036 137 75 5 1 132 1 128 3.82e-17 75.1
MS.gene029779.t1 AT1G72350 52.055 73 33 1 2 74 43 113 3.84e-17 76.3
MS.gene029779.t1 AT2G45660 37.037 108 57 2 1 104 1 101 4.97e-17 75.9
MS.gene029779.t1 AT5G51870 35.036 137 75 5 1 132 24 151 5.57e-17 75.1
MS.gene029779.t1 AT4G09960 47.826 69 36 0 1 69 2 70 7.39e-17 75.5
MS.gene029779.t1 AT4G09960 47.826 69 36 0 1 69 1 69 7.50e-17 75.5
MS.gene029779.t1 AT4G09960 47.826 69 36 0 1 69 1 69 8.14e-17 75.1
MS.gene029779.t1 AT4G24540 37.273 110 63 2 1 105 1 109 1.01e-16 75.1
MS.gene029779.t1 AT4G09960 47.826 69 36 0 1 69 11 79 1.10e-16 75.5
MS.gene029779.t1 AT5G51870 35.036 137 75 5 1 132 1 128 1.11e-16 74.7
MS.gene029779.t1 AT2G22630 33.813 139 63 4 1 139 1 110 1.36e-16 74.7
MS.gene029779.t1 AT2G22630 33.813 139 63 4 1 139 1 110 1.36e-16 74.7
MS.gene029779.t1 AT4G09960 47.826 69 36 0 1 69 27 95 1.73e-16 75.1
MS.gene029779.t1 AT4G09960 47.826 69 36 0 1 69 96 164 1.80e-16 75.9
MS.gene029779.t1 AT5G51870 35.036 137 75 5 1 132 1 128 1.91e-16 74.3
MS.gene029779.t1 AT4G22950 47.826 69 36 0 1 69 1 69 2.16e-16 74.3
MS.gene029779.t1 AT4G22950 47.826 69 36 0 1 69 1 69 2.16e-16 74.3
MS.gene029779.t1 AT5G51870 35.036 137 75 5 1 132 11 138 2.48e-16 74.3
MS.gene029779.t1 AT1G29962 44.444 72 40 0 2 73 8 79 2.79e-16 73.2
MS.gene029779.t1 AT5G65070 38.298 94 47 2 1 83 1 94 3.30e-16 72.0
MS.gene029779.t1 AT5G10140 52.632 57 27 0 1 57 1 57 4.13e-16 72.4
MS.gene029779.t1 AT5G10140 51.724 58 28 0 1 58 1 58 6.79e-16 72.0
MS.gene029779.t1 AT2G14210 55.172 58 26 0 1 58 1 58 7.22e-16 73.2
MS.gene029779.t1 AT5G10140 52.632 57 27 0 1 57 1 57 7.35e-16 72.0
MS.gene029779.t1 AT5G10140 52.632 57 27 0 1 57 1 57 8.34e-16 72.0
MS.gene029779.t1 AT2G14210 55.172 58 26 0 1 58 1 58 8.46e-16 72.8
MS.gene029779.t1 AT5G65070 50.000 58 29 0 1 58 1 58 9.85e-16 72.0
MS.gene029779.t1 AT5G20240 39.048 105 56 3 1 97 1 105 1.15e-15 70.9
MS.gene029779.t1 AT1G71692 60.000 50 20 0 1 50 1 50 1.21e-15 72.0
MS.gene029779.t1 AT2G42830 47.826 69 36 0 1 69 16 84 1.33e-15 72.4
MS.gene029779.t1 AT2G42830 47.826 69 36 0 1 69 16 84 1.35e-15 72.4
MS.gene029779.t1 AT4G11880 53.448 58 27 0 1 58 1 58 1.52e-15 71.2
MS.gene029779.t1 AT4G11880 53.448 58 27 0 1 58 1 58 1.52e-15 71.2
MS.gene029779.t1 AT5G65070 45.070 71 37 1 1 69 1 71 1.70e-15 72.0
MS.gene029779.t1 AT5G51860 46.377 69 37 0 1 69 1 69 1.73e-15 71.2
MS.gene029779.t1 AT3G58780 47.826 69 36 0 1 69 16 84 1.91e-15 72.0
MS.gene029779.t1 AT5G51860 46.377 69 37 0 1 69 1 69 2.15e-15 71.2
MS.gene029779.t1 AT2G22540 52.632 57 27 0 1 57 1 57 2.24e-15 71.6
MS.gene029779.t1 AT2G22540 52.632 57 27 0 1 57 1 57 2.24e-15 71.6
MS.gene029779.t1 AT3G58780 47.826 69 36 0 1 69 22 90 2.26e-15 72.0
MS.gene029779.t1 AT3G58780 43.023 86 36 1 1 73 16 101 2.63e-15 71.6
MS.gene029779.t1 AT5G65070 50.000 58 29 0 1 58 1 58 3.08e-15 71.2
MS.gene029779.t1 AT3G58780 47.826 69 36 0 1 69 16 84 3.50e-15 72.0
MS.gene029779.t1 AT3G30260 52.632 57 27 0 1 57 1 57 3.65e-15 71.2
MS.gene029779.t1 AT5G20240 39.048 105 56 3 1 97 1 105 3.69e-15 70.5
MS.gene029779.t1 AT5G65070 50.000 58 29 0 1 58 1 58 3.89e-15 70.5
MS.gene029779.t1 AT3G54340 38.636 88 39 1 1 73 1 88 4.25e-15 70.9
MS.gene029779.t1 AT4G11880 53.448 58 27 0 1 58 1 58 4.82e-15 70.5
MS.gene029779.t1 AT4G11880 53.448 58 27 0 1 58 1 58 4.82e-15 70.5
MS.gene029779.t1 AT1G69540 46.053 76 40 1 1 75 1 76 5.66e-15 71.6
MS.gene029779.t1 AT4G18960 48.529 68 35 0 2 69 18 85 6.19e-15 70.9
MS.gene029779.t1 AT1G69540 46.053 76 40 1 1 75 1 76 6.23e-15 72.0
MS.gene029779.t1 AT1G77980 46.575 73 38 1 1 72 1 73 8.68e-15 71.2
MS.gene029779.t1 AT1G46408 46.053 76 35 2 1 70 1 76 9.58e-15 70.5
MS.gene029779.t1 AT2G22540 58.000 50 21 0 1 50 1 50 1.01e-14 70.1
MS.gene029779.t1 AT1G69120 59.184 49 20 0 1 49 1 49 1.14e-14 69.7
MS.gene029779.t1 AT3G58780 47.692 65 34 0 1 65 16 80 1.24e-14 70.1
MS.gene029779.t1 AT2G03710 50.877 57 28 0 1 57 1 57 1.49e-14 68.6
MS.gene029779.t1 AT5G60910 49.123 57 29 0 1 57 1 57 1.61e-14 69.3
MS.gene029779.t1 AT1G69120 59.184 49 20 0 1 49 1 49 2.16e-14 69.3
MS.gene029779.t1 AT1G22130 45.205 73 39 1 1 72 1 73 2.28e-14 70.1
MS.gene029779.t1 AT1G18750 41.558 77 43 1 1 75 1 77 2.51e-14 70.1
MS.gene029779.t1 AT1G18750 41.558 77 43 1 1 75 1 77 2.58e-14 70.1
MS.gene029779.t1 AT1G18750 41.558 77 43 1 1 75 1 77 2.65e-14 70.1
MS.gene029779.t1 AT1G26310 57.143 49 21 0 1 49 1 49 2.67e-14 68.9
MS.gene029779.t1 AT5G62165 40.580 69 41 0 1 69 1 69 2.87e-14 67.0
MS.gene029779.t1 AT5G62165 40.580 69 41 0 1 69 1 69 2.87e-14 67.0
MS.gene029779.t1 AT5G62165 40.580 69 41 0 1 69 1 69 2.87e-14 67.0
MS.gene029779.t1 AT5G15800 50.877 57 28 0 1 57 1 57 3.56e-14 68.6
MS.gene029779.t1 AT5G65060 50.909 55 27 0 1 55 1 55 3.87e-14 67.4
MS.gene029779.t1 AT5G65050 49.091 55 28 0 1 55 1 55 4.37e-14 67.0
MS.gene029779.t1 AT5G65080 47.826 69 35 1 1 68 8 76 4.41e-14 67.8
MS.gene029779.t1 AT3G02310 50.877 57 28 0 1 57 1 57 4.50e-14 67.4
MS.gene029779.t1 AT5G15800 50.877 57 28 0 1 57 1 57 5.07e-14 68.6
MS.gene029779.t1 AT5G62165 40.580 69 41 0 1 69 1 69 5.63e-14 66.2
MS.gene029779.t1 AT5G62165 40.580 69 41 0 1 69 1 69 5.63e-14 66.2
MS.gene029779.t1 AT5G62165 40.580 69 41 0 1 69 1 69 5.63e-14 66.2
MS.gene029779.t1 AT5G62165 40.580 69 41 0 1 69 1 69 5.63e-14 66.2
MS.gene029779.t1 AT5G62165 40.580 69 41 0 1 69 1 69 5.63e-14 66.2
MS.gene029779.t1 AT2G03710 50.877 57 28 0 1 57 1 57 6.33e-14 68.2
MS.gene029779.t1 AT2G03710 50.877 57 28 0 1 57 1 57 6.45e-14 68.2
MS.gene029779.t1 AT5G23260 59.184 49 20 0 1 49 1 49 6.73e-14 67.8
MS.gene029779.t1 AT5G23260 59.184 49 20 0 1 49 1 49 6.96e-14 67.8
MS.gene029779.t1 AT5G65060 50.909 55 27 0 1 55 1 55 6.98e-14 66.6
MS.gene029779.t1 AT1G24260 50.877 57 28 0 1 57 1 57 6.99e-14 67.8
MS.gene029779.t1 AT5G65060 50.909 55 27 0 1 55 1 55 7.21e-14 67.0
MS.gene029779.t1 AT1G24260 50.877 57 28 0 1 57 1 57 7.62e-14 67.8
MS.gene029779.t1 AT1G24260 50.877 57 28 0 1 57 1 57 7.77e-14 67.8
MS.gene029779.t1 AT3G02310 50.877 57 28 0 1 57 1 57 7.93e-14 67.8
MS.gene029779.t1 AT5G23260 59.184 49 20 0 1 49 17 65 7.99e-14 67.8
MS.gene029779.t1 AT5G23260 59.184 49 20 0 1 49 17 65 8.58e-14 67.8
MS.gene029779.t1 AT5G62165 40.580 69 41 0 1 69 1 69 8.63e-14 67.0
MS.gene029779.t1 AT5G62165 40.580 69 41 0 1 69 1 69 8.63e-14 67.0
MS.gene029779.t1 AT5G62165 40.580 69 41 0 1 69 1 69 8.63e-14 67.0
MS.gene029779.t1 AT5G62165 40.580 69 41 0 1 69 1 69 9.34e-14 66.6
MS.gene029779.t1 AT5G62165 40.580 69 41 0 1 69 1 69 9.34e-14 66.6
MS.gene029779.t1 AT5G62165 40.580 69 41 0 1 69 1 69 9.38e-14 64.7
MS.gene029779.t1 AT1G17310 55.172 58 24 1 17 74 63 118 1.14e-13 66.6
MS.gene029779.t1 AT1G28450 29.193 161 90 2 2 141 8 165 1.16e-13 66.2
MS.gene029779.t1 AT5G65080 49.091 55 28 0 1 55 8 62 1.21e-13 66.2
MS.gene029779.t1 AT5G65050 49.091 55 28 0 1 55 1 55 1.55e-13 65.9
MS.gene029779.t1 AT5G65050 49.091 55 28 0 1 55 1 55 1.57e-13 66.2
MS.gene029779.t1 AT5G65050 49.091 55 28 0 1 55 1 55 1.57e-13 65.9
MS.gene029779.t1 AT1G17310 55.172 58 24 1 17 74 74 129 1.61e-13 66.6
MS.gene029779.t1 AT1G77950 43.836 73 40 1 1 72 1 73 2.90e-13 66.2
MS.gene029779.t1 AT1G77950 43.836 73 40 1 1 72 1 73 2.90e-13 66.2
MS.gene029779.t1 AT1G77950 43.836 73 40 1 1 72 1 73 2.90e-13 66.2
MS.gene029779.t1 AT1G77950 43.836 73 40 1 1 72 1 73 2.90e-13 66.2
MS.gene029779.t1 AT2G03060 44.156 77 41 2 1 75 1 77 5.64e-13 66.2
MS.gene029779.t1 AT2G03060 44.156 77 41 2 1 75 1 77 6.09e-13 66.2
MS.gene029779.t1 AT2G03060 44.156 77 41 2 1 75 1 77 6.09e-13 66.2
MS.gene029779.t1 AT2G03060 44.156 77 41 2 1 75 1 77 6.09e-13 66.2
MS.gene029779.t1 AT1G60920 38.614 101 52 5 1 92 1 100 1.19e-12 63.5
MS.gene029779.t1 AT4G37435 49.123 57 29 0 1 57 1 57 2.47e-12 62.8
MS.gene029779.t1 AT2G26320 40.625 64 38 0 1 64 17 80 3.28e-12 60.5
MS.gene029779.t1 AT1G77080 64.103 39 14 0 1 39 1 39 2.39e-11 59.7
MS.gene029779.t1 AT1G77080 64.103 39 14 0 1 39 1 39 2.49e-11 59.7
MS.gene029779.t1 AT1G77080 64.103 39 14 0 1 39 1 39 4.18e-11 58.5
MS.gene029779.t1 AT1G77080 64.103 39 14 0 1 39 1 39 5.77e-11 59.3
MS.gene029779.t1 AT1G77080 64.103 39 14 0 1 39 1 39 8.55e-11 58.5

Find 28 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAGAGAATTACTTGGTTT+TGG 0.200763 1.2:+48328685 None:intergenic
GGGAAGAATCCTTACTCTTT+TGG 0.254624 1.2:-48328754 MS.gene029779:CDS
GACTTCTGCTCCGCACAAAA+TGG 0.372405 1.2:+48328798 None:intergenic
TAGATTCAAATCTTCCATCT+TGG 0.375242 1.2:+48328642 None:intergenic
AGATTCAAATCTTCCATCTT+GGG 0.393307 1.2:+48328643 None:intergenic
GCTATTGTTGTGTTCTCTCC+AGG 0.420934 1.2:-48328775 MS.gene029779:CDS
AATGTGATTTGCCTTGTGTT+GGG 0.427234 1.2:+48328865 None:intergenic
ACATTCTCAAAGCGTCGAAC+TGG 0.454162 1.2:-48328847 MS.gene029779:CDS
GAATGTGATTTGCCTTGTGT+TGG 0.464658 1.2:+48328864 None:intergenic
CGGTTTCCTAGAGAATTACT+TGG 0.465336 1.2:+48328679 None:intergenic
GTAGCAACAAAATCAACTCC+TGG 0.505710 1.2:+48328727 None:intergenic
CACTTCTGAAGCTCCCAAGA+TGG 0.519111 1.2:-48328656 MS.gene029779:CDS
CCTGGGTGACCAAAAGAGTA+AGG 0.526567 1.2:+48328745 None:intergenic
ATGTGATTTGCCTTGTGTTG+GGG 0.537629 1.2:+48328866 None:intergenic
CCAAAACCAAGTAATTCTCT+AGG 0.541444 1.2:-48328685 MS.gene029779:CDS
AATCCGTGATGGTGAAAAGC+AGG 0.547888 1.2:-48328596 MS.gene029779:CDS
CTATTGTTGTGTTCTCTCCA+GGG 0.560098 1.2:-48328774 MS.gene029779:CDS
AAAGAGTAAGGATTCTTCCC+TGG 0.575742 1.2:+48328757 None:intergenic
TGATGGTGAAAAGCAGGCTG+CGG 0.588117 1.2:-48328590 MS.gene029779:CDS
GTCGCAAAATTAAGATAGAG+AGG 0.594203 1.2:-48328897 MS.gene029779:CDS
TAGCAACAAAATCAACTCCT+GGG 0.598778 1.2:+48328728 None:intergenic
TCTTGGGAGCTTCAGAAGTG+CGG 0.606345 1.2:+48328659 None:intergenic
GGGTGAAAGACCCCAACACA+AGG 0.612469 1.2:-48328876 MS.gene029779:CDS
CTAGCTAAAGATCCAGTGGT+GGG 0.639080 1.2:-48328430 MS.gene029779:CDS
GCTTCTAGCTAAAGATCCAG+TGG 0.643039 1.2:-48328434 MS.gene029779:CDS
TCTAGCTAAAGATCCAGTGG+TGG 0.650776 1.2:-48328431 MS.gene029779:CDS
TCGCAAAATTAAGATAGAGA+GGG 0.676979 1.2:-48328896 MS.gene029779:CDS
GTGTTAGCACAAATCCGTGA+TGG 0.688259 1.2:-48328607 MS.gene029779:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAATTATCCATTTTGTG+CGG - chr1.2:48328483-48328502 MS.gene029779:CDS 25.0%
AGATTCAAATCTTCCATCTT+GGG + chr1.2:48328651-48328670 None:intergenic 30.0%
TAGATTCAAATCTTCCATCT+TGG + chr1.2:48328652-48328671 None:intergenic 30.0%
TCGCAAAATTAAGATAGAGA+GGG - chr1.2:48328395-48328414 MS.gene029779:CDS 30.0%
CCAAAACCAAGTAATTCTCT+AGG - chr1.2:48328606-48328625 MS.gene029779:CDS 35.0%
GTCGCAAAATTAAGATAGAG+AGG - chr1.2:48328394-48328413 MS.gene029779:CDS 35.0%
TAGCAACAAAATCAACTCCT+GGG + chr1.2:48328566-48328585 None:intergenic 35.0%
! AATGTGATTTGCCTTGTGTT+GGG + chr1.2:48328429-48328448 None:intergenic 35.0%
! CCTAGAGAATTACTTGGTTT+TGG + chr1.2:48328609-48328628 None:intergenic 35.0%
AAAGAGTAAGGATTCTTCCC+TGG + chr1.2:48328537-48328556 None:intergenic 40.0%
CGGTTTCCTAGAGAATTACT+TGG + chr1.2:48328615-48328634 None:intergenic 40.0%
CTATTGTTGTGTTCTCTCCA+GGG - chr1.2:48328517-48328536 MS.gene029779:CDS 40.0%
GTAGCAACAAAATCAACTCC+TGG + chr1.2:48328567-48328586 None:intergenic 40.0%
! ATGTGATTTGCCTTGTGTTG+GGG + chr1.2:48328428-48328447 None:intergenic 40.0%
! GAATGTGATTTGCCTTGTGT+TGG + chr1.2:48328430-48328449 None:intergenic 40.0%
! GGGAAGAATCCTTACTCTTT+TGG - chr1.2:48328537-48328556 MS.gene029779:CDS 40.0%
CTAGCTAAAGATCCAGTGGT+GGG - chr1.2:48328861-48328880 MS.gene029779:CDS 45.0%
GCTATTGTTGTGTTCTCTCC+AGG - chr1.2:48328516-48328535 MS.gene029779:CDS 45.0%
GTGTTAGCACAAATCCGTGA+TGG - chr1.2:48328684-48328703 MS.gene029779:CDS 45.0%
TCTAGCTAAAGATCCAGTGG+TGG - chr1.2:48328860-48328879 MS.gene029779:CDS 45.0%
! AATCCGTGATGGTGAAAAGC+AGG - chr1.2:48328695-48328714 MS.gene029779:CDS 45.0%
! GCTTCTAGCTAAAGATCCAG+TGG - chr1.2:48328857-48328876 MS.gene029779:CDS 45.0%
!! ACATTCTCAAAGCGTCGAAC+TGG - chr1.2:48328444-48328463 MS.gene029779:CDS 45.0%
!! TTCGCTTTTATTCCCACCAC+TGG + chr1.2:48328876-48328895 None:intergenic 45.0%
CCTGGGTGACCAAAAGAGTA+AGG + chr1.2:48328549-48328568 None:intergenic 50.0%
GACTTCTGCTCCGCACAAAA+TGG + chr1.2:48328496-48328515 None:intergenic 50.0%
TCTTGGGAGCTTCAGAAGTG+CGG + chr1.2:48328635-48328654 None:intergenic 50.0%
! CCTTACTCTTTTGGTCACCC+AGG - chr1.2:48328546-48328565 MS.gene029779:CDS 50.0%
! TGATGGTGAAAAGCAGGCTG+CGG - chr1.2:48328701-48328720 MS.gene029779:CDS 50.0%
!! CACTTCTGAAGCTCCCAAGA+TGG - chr1.2:48328635-48328654 MS.gene029779:CDS 50.0%
!! CAGCCTGCTTTTCACCATCA+CGG + chr1.2:48328701-48328720 None:intergenic 50.0%
GGGTGAAAGACCCCAACACA+AGG - chr1.2:48328415-48328434 MS.gene029779:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 48328387 48328926 48328387 ID=MS.gene029779
chr1.2 mRNA 48328387 48328926 48328387 ID=MS.gene029779.t1;Parent=MS.gene029779
chr1.2 exon 48328387 48328926 48328387 ID=MS.gene029779.t1.exon1;Parent=MS.gene029779.t1
chr1.2 CDS 48328387 48328926 48328387 ID=cds.MS.gene029779.t1;Parent=MS.gene029779.t1
Gene Sequence

>MS.gene029779

ATGGGTCGTCGCAAAATTAAGATAGAGAGGGTGAAAGACCCCAACACAAGGCAAATCACATTCTCAAAGCGTCGAACTGGTTTATTCAAAAAAGCAAATGAATTATCCATTTTGTGCGGAGCAGAAGTCGCTATTGTTGTGTTCTCTCCAGGGAAGAATCCTTACTCTTTTGGTCACCCAGGAGTTGATTTTGTTGCTACGAAGTATCTTCAACTAGAGCCAAAACCAAGTAATTCTCTAGGAAACCGCACTTCTGAAGCTCCCAAGATGGAAGATTTGAATCTAGAACTTGCTGATGTGTTAGCACAAATCCGTGATGGTGAAAAGCAGGCTGCGGCTCATGATGAGATTCTGAAGCAAAACGATGTGACAAAACTCTCTGAGCTTAAAGAATTGAGAGATTCATATAAAGAGCTTCAAGATTGCGTAAAATTGCAGCTCAGTGATATCGAGATATCAGAATGTTTGATGCTTCTAGCTAAAGATCCAGTGGTGGGAATAAAAGCGAAATCGTCAAAAAATAAAAGAAGAAAAAATTGA
Protein sequence

>MS.gene029779.t1

MGRRKIKIERVKDPNTRQITFSKRRTGLFKKANELSILCGAEVAIVVFSPGKNPYSFGHPGVDFVATKYLQLEPKPSNSLGNRTSEAPKMEDLNLELADVLAQIRDGEKQAAAHDEILKQNDVTKLSELKELRDSYKELQDCVKLQLSDIEISECLMLLAKDPVVGIKAKSSKNKRRKN