Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02981.t1 | RHN81205.1 | 71.3 | 731 | 37 | 1 | 1 | 558 | 1 | 731 | 1.50E-280 | 974.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02981.t1 | Q9SWG3 | 34.1 | 299 | 184 | 5 | 159 | 452 | 392 | 682 | 3.1e-40 | 167.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02981.t1 | A0A396JYX6 | 71.3 | 731 | 37 | 1 | 1 | 558 | 1 | 731 | 1.1e-280 | 974.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene02981.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02981.t1 | MTR_2g090105 | 43.750 | 176 | 78 | 4 | 396 | 555 | 16 | 186 | 4.01e-30 | 117 |
| MS.gene02981.t1 | MTR_7g031620 | 56.790 | 81 | 35 | 0 | 3 | 83 | 2 | 82 | 1.48e-21 | 89.4 |
| MS.gene02981.t1 | MTR_7g446060 | 46.988 | 83 | 44 | 0 | 74 | 156 | 2 | 84 | 1.06e-17 | 80.1 |
| MS.gene02981.t1 | MTR_8g465780 | 29.412 | 136 | 94 | 2 | 190 | 323 | 1 | 136 | 5.06e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02981.t1 | AT4G15090 | 34.114 | 299 | 184 | 5 | 159 | 452 | 392 | 682 | 3.36e-45 | 171 |
| MS.gene02981.t1 | AT4G15090 | 34.114 | 299 | 184 | 5 | 159 | 452 | 392 | 682 | 3.36e-45 | 171 |
| MS.gene02981.t1 | AT4G15090 | 34.114 | 299 | 184 | 5 | 159 | 452 | 392 | 682 | 3.36e-45 | 171 |
| MS.gene02981.t1 | AT4G15090 | 34.114 | 299 | 184 | 5 | 159 | 452 | 392 | 682 | 3.36e-45 | 171 |
| MS.gene02981.t1 | AT4G15090 | 34.114 | 299 | 184 | 5 | 159 | 452 | 392 | 682 | 3.36e-45 | 171 |
| MS.gene02981.t1 | AT1G52520 | 37.931 | 232 | 136 | 5 | 158 | 384 | 411 | 639 | 5.21e-43 | 164 |
| MS.gene02981.t1 | AT3G22170 | 37.281 | 228 | 136 | 2 | 159 | 386 | 401 | 621 | 7.83e-42 | 161 |
| MS.gene02981.t1 | AT3G22170 | 37.281 | 228 | 136 | 2 | 159 | 386 | 401 | 621 | 7.83e-42 | 161 |
| MS.gene02981.t1 | AT4G38180 | 35.909 | 220 | 135 | 3 | 164 | 383 | 421 | 634 | 4.81e-38 | 150 |
| MS.gene02981.t1 | AT4G19990 | 35.622 | 233 | 143 | 3 | 157 | 388 | 338 | 564 | 9.83e-37 | 145 |
| MS.gene02981.t1 | AT4G19990 | 35.622 | 233 | 143 | 3 | 157 | 388 | 338 | 564 | 9.83e-37 | 145 |
| MS.gene02981.t1 | AT4G19990 | 35.622 | 233 | 143 | 3 | 157 | 388 | 338 | 564 | 1.29e-36 | 145 |
| MS.gene02981.t1 | AT4G19990 | 35.622 | 233 | 143 | 3 | 157 | 388 | 338 | 564 | 1.29e-36 | 145 |
| MS.gene02981.t1 | AT4G19990 | 35.622 | 233 | 143 | 3 | 157 | 388 | 281 | 507 | 1.43e-36 | 145 |
| MS.gene02981.t1 | AT4G19990 | 35.622 | 233 | 143 | 3 | 157 | 388 | 338 | 564 | 1.45e-36 | 145 |
| MS.gene02981.t1 | AT4G19990 | 35.622 | 233 | 143 | 3 | 157 | 388 | 352 | 578 | 1.69e-36 | 145 |
| MS.gene02981.t1 | AT1G76320 | 31.897 | 232 | 149 | 3 | 159 | 390 | 329 | 551 | 3.17e-33 | 135 |
| MS.gene02981.t1 | AT1G76320 | 31.897 | 232 | 149 | 3 | 159 | 390 | 329 | 551 | 3.17e-33 | 135 |
| MS.gene02981.t1 | AT1G76320 | 31.897 | 232 | 149 | 3 | 159 | 390 | 329 | 551 | 3.26e-33 | 135 |
| MS.gene02981.t1 | AT1G76320 | 31.897 | 232 | 149 | 3 | 159 | 390 | 329 | 551 | 6.19e-33 | 134 |
| MS.gene02981.t1 | AT2G32250 | 34.685 | 222 | 138 | 2 | 159 | 380 | 336 | 550 | 6.50e-33 | 134 |
| MS.gene02981.t1 | AT2G32250 | 34.685 | 222 | 138 | 2 | 159 | 380 | 336 | 550 | 6.50e-33 | 134 |
| MS.gene02981.t1 | AT2G32250 | 34.685 | 222 | 138 | 2 | 159 | 380 | 336 | 550 | 6.89e-33 | 134 |
| MS.gene02981.t1 | AT2G32250 | 34.685 | 222 | 138 | 2 | 159 | 380 | 336 | 550 | 6.89e-33 | 134 |
| MS.gene02981.t1 | AT2G32250 | 34.685 | 222 | 138 | 2 | 159 | 380 | 336 | 550 | 6.89e-33 | 134 |
| MS.gene02981.t1 | AT2G32250 | 34.685 | 222 | 138 | 2 | 159 | 380 | 295 | 509 | 8.23e-33 | 134 |
| MS.gene02981.t1 | AT2G32250 | 34.685 | 222 | 138 | 2 | 159 | 380 | 336 | 550 | 8.42e-33 | 134 |
| MS.gene02981.t1 | AT2G32250 | 34.685 | 222 | 138 | 2 | 159 | 380 | 295 | 509 | 8.50e-33 | 134 |
| MS.gene02981.t1 | AT4G38170 | 30.131 | 229 | 154 | 2 | 159 | 387 | 181 | 403 | 2.19e-32 | 131 |
| MS.gene02981.t1 | AT1G80010 | 33.761 | 234 | 147 | 5 | 158 | 387 | 436 | 665 | 5.14e-30 | 125 |
| MS.gene02981.t1 | AT2G27110 | 33.740 | 246 | 142 | 9 | 167 | 403 | 371 | 604 | 1.87e-29 | 124 |
| MS.gene02981.t1 | AT2G27110 | 33.740 | 246 | 142 | 9 | 167 | 403 | 371 | 604 | 1.87e-29 | 124 |
| MS.gene02981.t1 | AT2G27110 | 33.740 | 246 | 142 | 9 | 167 | 403 | 226 | 459 | 2.25e-29 | 123 |
| MS.gene02981.t1 | AT3G06250 | 31.120 | 241 | 152 | 7 | 142 | 380 | 473 | 701 | 7.86e-27 | 115 |
| MS.gene02981.t1 | AT3G06250 | 31.120 | 241 | 152 | 7 | 142 | 380 | 473 | 701 | 7.86e-27 | 115 |
| MS.gene02981.t1 | AT3G06250 | 31.120 | 241 | 152 | 7 | 142 | 380 | 473 | 701 | 7.86e-27 | 115 |
| MS.gene02981.t1 | AT5G18960 | 32.589 | 224 | 138 | 6 | 159 | 380 | 513 | 725 | 2.90e-26 | 114 |
| MS.gene02981.t1 | AT5G18960 | 32.589 | 224 | 138 | 6 | 159 | 380 | 513 | 725 | 2.90e-26 | 114 |
| MS.gene02981.t1 | AT1G10240 | 27.232 | 224 | 148 | 4 | 159 | 380 | 394 | 604 | 1.93e-16 | 83.2 |
| MS.gene02981.t1 | AT1G10240 | 27.232 | 224 | 148 | 4 | 159 | 380 | 394 | 604 | 1.93e-16 | 83.2 |
| MS.gene02981.t1 | AT5G28530 | 27.111 | 225 | 144 | 7 | 160 | 380 | 343 | 551 | 2.76e-14 | 76.3 |
| MS.gene02981.t1 | AT5G28530 | 27.570 | 214 | 139 | 6 | 167 | 380 | 417 | 614 | 4.10e-14 | 75.9 |
| MS.gene02981.t1 | AT5G28530 | 27.570 | 214 | 139 | 6 | 167 | 380 | 417 | 614 | 4.10e-14 | 75.9 |
| MS.gene02981.t1 | AT5G28530 | 26.432 | 227 | 147 | 7 | 160 | 380 | 343 | 555 | 2.71e-13 | 73.2 |
| MS.gene02981.t1 | AT5G28530 | 26.852 | 216 | 142 | 6 | 167 | 380 | 417 | 618 | 4.28e-13 | 72.8 |
Find 93 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCAATGGTAAATGCTTTC+TGG | 0.145575 | 1.3:-62864618 | None:intergenic |
| TACTTGAAATTCTTTAAATT+TGG | 0.164119 | 1.3:-62864638 | None:intergenic |
| AATTAAAGACGTGGTGTTTA+AGG | 0.198475 | 1.3:+62864759 | MS.gene02981:CDS |
| TGTTGCTTATTTGAGTTTAA+AGG | 0.212760 | 1.3:+62864820 | MS.gene02981:CDS |
| TGTATGTGAAAGACACATTT+TGG | 0.241766 | 1.3:+62864392 | MS.gene02981:CDS |
| ATTGCCTGTGTGAGTCATTT+TGG | 0.243877 | 1.3:+62864580 | MS.gene02981:CDS |
| ATGATAATGAATGGTTAAAA+TGG | 0.261144 | 1.3:+62864338 | MS.gene02981:CDS |
| TACGCTAATCGTGTAGGTTT+TGG | 0.267234 | 1.3:+62863320 | MS.gene02981:CDS |
| AGAATTGCAACGTGTTAATA+TGG | 0.267882 | 1.3:+62864975 | MS.gene02981:CDS |
| GTTCAGAACAGGAAATATTC+TGG | 0.287164 | 1.3:-62865599 | None:intergenic |
| AGTAGAAGCAACTTCATAAA+AGG | 0.295990 | 1.3:-62865007 | None:intergenic |
| GGTCTGAAGAAGAAGTTATT+AGG | 0.310139 | 1.3:+62863285 | MS.gene02981:CDS |
| TAATACTAGCTTTGAAAGAT+TGG | 0.313945 | 1.3:+62864684 | MS.gene02981:CDS |
| TTTATGATTTGAGGACAATA+TGG | 0.324306 | 1.3:-62865576 | None:intergenic |
| TCTGAGCAAAAGTGATTTCA+TGG | 0.327773 | 1.3:+62864279 | MS.gene02981:CDS |
| TTCAATAACAATTCTTGAAA+TGG | 0.335352 | 1.3:-62863519 | None:intergenic |
| TGGTAAATGCTTTCTGGAAA+TGG | 0.337237 | 1.3:-62864612 | None:intergenic |
| CTAGAACTGGGATGACATTT+AGG | 0.343463 | 1.3:+62863264 | None:intergenic |
| AGGATGGTTGATCATTCTTA+TGG | 0.354581 | 1.3:-62865724 | None:intergenic |
| TTTAGATTGGATGAGAGTTC+GGG | 0.356799 | 1.3:+62863578 | MS.gene02981:CDS |
| AATGCTTGTGTAGCTTTAGA+TGG | 0.358270 | 1.3:+62863488 | MS.gene02981:CDS |
| CTTTGTGTGCTTAAGCTCAT+TGG | 0.361479 | 1.3:+62864862 | MS.gene02981:CDS |
| TCATCAGTTTCTTGAAGAAT+AGG | 0.369535 | 1.3:-62865436 | None:intergenic |
| ATGGGCATCCTCTTTCAAAA+AGG | 0.374223 | 1.3:+62865190 | MS.gene02981:CDS |
| TAAGGTATGTTTCAATGAAA+AGG | 0.385210 | 1.3:+62864777 | MS.gene02981:CDS |
| ATTTGATGAGCGGCACCGTT+GGG | 0.394490 | 1.3:+62864363 | MS.gene02981:CDS |
| GGGTGTGGGAATCTTACTTC+TGG | 0.395908 | 1.3:+62863689 | MS.gene02981:CDS |
| ATTTACAGAAAGTGATGAAC+AGG | 0.427795 | 1.3:+62865049 | MS.gene02981:CDS |
| CAACTGTAACTCTCAGTAAT+GGG | 0.432520 | 1.3:+62865172 | MS.gene02981:CDS |
| ACAATCCTAGTCACGTGGTT+TGG | 0.434005 | 1.3:-62865144 | None:intergenic |
| ATATTCTGGTTTATGATTTG+AGG | 0.444118 | 1.3:-62865585 | None:intergenic |
| GACAACATTGAAGCGGTTTG+TGG | 0.452916 | 1.3:+62864483 | MS.gene02981:CDS |
| TATTTGATGAGCGGCACCGT+TGG | 0.456287 | 1.3:+62864362 | MS.gene02981:CDS |
| TACCTGTAAAAGTTCAGAAC+AGG | 0.463097 | 1.3:-62865610 | None:intergenic |
| GGTCTATGTCTTTACGAGGA+TGG | 0.493066 | 1.3:-62865740 | None:intergenic |
| CCAACTGTAACTCTCAGTAA+TGG | 0.495315 | 1.3:+62865171 | MS.gene02981:CDS |
| TTAACCATTCATTATCATGT+AGG | 0.496964 | 1.3:-62864333 | None:intergenic |
| CAATCTAAAATACCGTCCTC+TGG | 0.503024 | 1.3:-62863564 | None:intergenic |
| AGTATGTTCTTGTGTAATCC+TGG | 0.507755 | 1.3:-62865115 | None:intergenic |
| GGTGTTGAGATGAATGGGTG+TGG | 0.508197 | 1.3:+62863674 | MS.gene02981:CDS |
| TACTAGCTTTGAAAGATTGG+AGG | 0.508243 | 1.3:+62864687 | MS.gene02981:CDS |
| CAACTCCAAACCACGTGACT+AGG | 0.513724 | 1.3:+62865139 | MS.gene02981:CDS |
| GAGGTAAGATATTGCTTCGA+AGG | 0.514633 | 1.3:-62863440 | None:intergenic |
| CTGTGGGTGTTGAGATGAAT+GGG | 0.521887 | 1.3:+62863669 | MS.gene02981:CDS |
| AAGTGATTTCATGGAGAGGT+GGG | 0.523064 | 1.3:+62864288 | MS.gene02981:CDS |
| GATCAAGGTGGGATTAATGT+TGG | 0.526517 | 1.3:+62863632 | MS.gene02981:CDS |
| AAATTCTTTAAATTTGGCAA+TGG | 0.528148 | 1.3:-62864632 | None:intergenic |
| ATTGAACATAATCATGAACT+TGG | 0.529122 | 1.3:+62863536 | MS.gene02981:CDS |
| ATAACCTACATGATAATGAA+TGG | 0.540605 | 1.3:+62864329 | MS.gene02981:CDS |
| ATTTAAAGAATTTCAAGTAG+AGG | 0.542601 | 1.3:+62864642 | MS.gene02981:CDS |
| AATTCAGAACTTAATGATCA+AGG | 0.544624 | 1.3:+62863617 | MS.gene02981:CDS |
| ATTGAATGATAAGATCGAAA+AGG | 0.546129 | 1.3:+62864522 | MS.gene02981:CDS |
| AAAGTGATTTCATGGAGAGG+TGG | 0.559223 | 1.3:+62864287 | MS.gene02981:CDS |
| CTTCTAAAGAGCCATCCTCC+AGG | 0.560777 | 1.3:+62865097 | MS.gene02981:CDS |
| GAAAGTGATGAACAGGATCA+AGG | 0.562243 | 1.3:+62865056 | MS.gene02981:CDS |
| TCTGTGGGTGTTGAGATGAA+TGG | 0.568290 | 1.3:+62863668 | MS.gene02981:CDS |
| TACCTCGAAAACACAGTGTA+GGG | 0.568827 | 1.3:+62863457 | MS.gene02981:CDS |
| TTACCTCGAAAACACAGTGT+AGG | 0.570982 | 1.3:+62863456 | MS.gene02981:CDS |
| ATGAATTACGCTAATCGTGT+AGG | 0.573095 | 1.3:+62863314 | MS.gene02981:CDS |
| GTGTTGAGATGAATGGGTGT+GGG | 0.575538 | 1.3:+62863675 | MS.gene02981:CDS |
| TAAAATGGTTATTTGATGAG+CGG | 0.580254 | 1.3:+62864353 | MS.gene02981:CDS |
| ACTCAAAGACAACATTGAAG+CGG | 0.582318 | 1.3:+62864476 | MS.gene02981:CDS |
| AAACGATCAAAGTCAAGAAG+AGG | 0.583429 | 1.3:+62865290 | MS.gene02981:CDS |
| CAGAACTTAATGATCAAGGT+GGG | 0.583962 | 1.3:+62863621 | MS.gene02981:CDS |
| AGATATACATTGATGAAACA+TGG | 0.592243 | 1.3:+62864946 | MS.gene02981:CDS |
| ACATCTTAGTGATGTAAACC+AGG | 0.599828 | 1.3:+62865465 | MS.gene02981:CDS |
| TAGCATGTAATTGTGCAAGA+AGG | 0.600918 | 1.3:+62863396 | MS.gene02981:CDS |
| GGTAGAAATCTTCAATCTGT+GGG | 0.601916 | 1.3:+62863653 | MS.gene02981:CDS |
| CCATTACTGAGAGTTACAGT+TGG | 0.609550 | 1.3:-62865171 | None:intergenic |
| AATGTGTCTTTCACATACAC+AGG | 0.609838 | 1.3:-62864388 | None:intergenic |
| CGAAAACACAGTGTAGGGCT+AGG | 0.611004 | 1.3:+62863462 | MS.gene02981:CDS |
| TCTTGTGTAATCCTGGAGGA+TGG | 0.617853 | 1.3:-62865108 | None:intergenic |
| TAAGATCGAAAAGGAAAGCA+TGG | 0.623239 | 1.3:+62864531 | MS.gene02981:CDS |
| TGGTAGAAATCTTCAATCTG+TGG | 0.643326 | 1.3:+62863652 | MS.gene02981:CDS |
| GTTCGGGGACTCATGTAGAG+AGG | 0.649720 | 1.3:+62863594 | MS.gene02981:CDS |
| AACTTGGTCAAACCAGAGGA+CGG | 0.650612 | 1.3:+62863552 | MS.gene02981:CDS |
| AGTGATTTCATGGAGAGGTG+GGG | 0.655787 | 1.3:+62864289 | MS.gene02981:CDS |
| CAAAACTCCAAAGAACAGCA+AGG | 0.655801 | 1.3:+62865260 | MS.gene02981:CDS |
| GGTTGGTCTATGTCTTTACG+AGG | 0.660233 | 1.3:-62865744 | None:intergenic |
| TCAGAACTTAATGATCAAGG+TGG | 0.664170 | 1.3:+62863620 | MS.gene02981:CDS |
| TGGCTCTTTAGAAGATAACA+CGG | 0.664729 | 1.3:-62865088 | None:intergenic |
| AAAGCCAAAATGACTCACAC+AGG | 0.676879 | 1.3:-62864584 | None:intergenic |
| TTAGATTGGATGAGAGTTCG+GGG | 0.678804 | 1.3:+62863579 | MS.gene02981:CDS |
| TCACATACACAGGAACCCAA+CGG | 0.679348 | 1.3:-62864378 | None:intergenic |
| AAAAGAGAAAATTAAAGACG+TGG | 0.683650 | 1.3:+62864750 | MS.gene02981:CDS |
| GCAAAAGTGATTTCATGGAG+AGG | 0.684724 | 1.3:+62864284 | MS.gene02981:CDS |
| CTGGAATGTCGACTGCACAA+CGG | 0.692769 | 1.3:+62864416 | MS.gene02981:CDS |
| CATGAACTTGGTCAAACCAG+AGG | 0.694396 | 1.3:+62863548 | MS.gene02981:CDS |
| GGTGGAGGAAGTATGTAAAG+CGG | 0.705310 | 1.3:+62864923 | MS.gene02981:CDS |
| GATCAACAATCCTAGTCACG+TGG | 0.707154 | 1.3:-62865149 | None:intergenic |
| TTTACATACTTCCTCCACCG+TGG | 0.708646 | 1.3:-62864919 | None:intergenic |
| GATCGAAAAGGAAAGCATGG+CGG | 0.728469 | 1.3:+62864534 | MS.gene02981:CDS |
| ATGTTCTTGTGTAATCCTGG+AGG | 0.762199 | 1.3:-62865112 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATATACAAAATTTATTTT+GGG | + | chr1.3:62863856-62863875 | MS.gene02981:intron | 10.0% |
| !! | AAATAGAGAAAATAAATTTG+TGG | - | chr1.3:62865328-62865347 | None:intergenic | 15.0% |
| !! | TACTTGAAATTCTTTAAATT+TGG | - | chr1.3:62864641-62864660 | None:intergenic | 15.0% |
| !!! | ATAAATAAATGTCTGATTTT+GGG | + | chr1.3:62865385-62865404 | MS.gene02981:intron | 15.0% |
| !!! | ATACTTATTTGTTAAATAAG+TGG | - | chr1.3:62863939-62863958 | None:intergenic | 15.0% |
| !!! | ATTTATTTGATTATTTCTTG+TGG | + | chr1.3:62865632-62865651 | MS.gene02981:intron | 15.0% |
| !!! | GGAATATACAAAATTTATTT+TGG | + | chr1.3:62863855-62863874 | MS.gene02981:intron | 15.0% |
| !! | AAATTCTTTAAATTTGGCAA+TGG | - | chr1.3:62864635-62864654 | None:intergenic | 20.0% |
| !! | TTATTTGAACATTTACATTG+TGG | + | chr1.3:62865521-62865540 | MS.gene02981:intron | 20.0% |
| !! | TTCAATAACAATTCTTGAAA+TGG | - | chr1.3:62863522-62863541 | None:intergenic | 20.0% |
| !!! | ATGATAATGAATGGTTAAAA+TGG | + | chr1.3:62864338-62864357 | MS.gene02981:CDS | 20.0% |
| !!! | ATTTAAAGAATTTCAAGTAG+AGG | + | chr1.3:62864642-62864661 | MS.gene02981:CDS | 20.0% |
| !!! | CATAAATAAATGTCTGATTT+TGG | + | chr1.3:62865384-62865403 | MS.gene02981:intron | 20.0% |
| ! | AAAAGAGAAAATTAAAGACG+TGG | + | chr1.3:62864750-62864769 | MS.gene02981:CDS | 25.0% |
| ! | AATTCAGAACTTAATGATCA+AGG | + | chr1.3:62863617-62863636 | MS.gene02981:CDS | 25.0% |
| ! | AGATATACATTGATGAAACA+TGG | + | chr1.3:62864946-62864965 | MS.gene02981:CDS | 25.0% |
| ! | ATTGAACATAATCATGAACT+TGG | + | chr1.3:62863536-62863555 | MS.gene02981:CDS | 25.0% |
| ! | ATTGAATGATAAGATCGAAA+AGG | + | chr1.3:62864522-62864541 | MS.gene02981:CDS | 25.0% |
| ! | TAAAATGGTTATTTGATGAG+CGG | + | chr1.3:62864353-62864372 | MS.gene02981:CDS | 25.0% |
| ! | TAAGGTATGTTTCAATGAAA+AGG | + | chr1.3:62864777-62864796 | MS.gene02981:CDS | 25.0% |
| ! | TTAACCATTCATTATCATGT+AGG | - | chr1.3:62864336-62864355 | None:intergenic | 25.0% |
| ! | TTTATGATTTGAGGACAATA+TGG | - | chr1.3:62865579-62865598 | None:intergenic | 25.0% |
| ! | TTTCATTGCTTTATCATCTT+CGG | - | chr1.3:62864119-62864138 | None:intergenic | 25.0% |
| !! | ATAACCTACATGATAATGAA+TGG | + | chr1.3:62864329-62864348 | MS.gene02981:CDS | 25.0% |
| !! | ATTTTATTGTGCAATGGATA+TGG | + | chr1.3:62863823-62863842 | MS.gene02981:intron | 25.0% |
| !! | TAGTCAATTTTATTGTGCAA+TGG | + | chr1.3:62863817-62863836 | MS.gene02981:intron | 25.0% |
| !! | TGTTGCTTATTTGAGTTTAA+AGG | + | chr1.3:62864820-62864839 | MS.gene02981:CDS | 25.0% |
| !!! | AAATAAAAATAAAGAGCACC+AGG | - | chr1.3:62865507-62865526 | None:intergenic | 25.0% |
| !!! | AGTATAGACTCATTTTTTGA+TGG | + | chr1.3:62864445-62864464 | MS.gene02981:CDS | 25.0% |
| !!! | ATATTCTGGTTTATGATTTG+AGG | - | chr1.3:62865588-62865607 | None:intergenic | 25.0% |
| !!! | GTATAGACTCATTTTTTGAT+GGG | + | chr1.3:62864446-62864465 | MS.gene02981:CDS | 25.0% |
| !!! | TAATACTAGCTTTGAAAGAT+TGG | + | chr1.3:62864684-62864703 | MS.gene02981:CDS | 25.0% |
| AATTAAAGACGTGGTGTTTA+AGG | + | chr1.3:62864759-62864778 | MS.gene02981:CDS | 30.0% | |
| AGAATTGCAACGTGTTAATA+TGG | + | chr1.3:62864975-62864994 | MS.gene02981:CDS | 30.0% | |
| AGCAATGAAAAATGCAATTG+AGG | + | chr1.3:62864129-62864148 | MS.gene02981:intron | 30.0% | |
| AGTAGAAGCAACTTCATAAA+AGG | - | chr1.3:62865010-62865029 | None:intergenic | 30.0% | |
| AGTTCAAAAAATGCAGATGA+TGG | + | chr1.3:62863356-62863375 | MS.gene02981:CDS | 30.0% | |
| ATAAAATAGTCTGACCATGA+TGG | - | chr1.3:62863994-62864013 | None:intergenic | 30.0% | |
| ATTTACAGAAAGTGATGAAC+AGG | + | chr1.3:62865049-62865068 | MS.gene02981:CDS | 30.0% | |
| CAATGGATATGGATGATAAA+AGG | + | chr1.3:62863834-62863853 | MS.gene02981:intron | 30.0% | |
| CGTGGCAAAATATAAAAAGA+CGG | - | chr1.3:62864904-62864923 | None:intergenic | 30.0% | |
| TCATCAGTTTCTTGAAGAAT+AGG | - | chr1.3:62865439-62865458 | None:intergenic | 30.0% | |
| TGATAAAACATCTGTTTCGT+AGG | + | chr1.3:62865551-62865570 | MS.gene02981:intron | 30.0% | |
| ! | AAATAAGTATGACTTGCCAT+TGG | + | chr1.3:62863949-62863968 | MS.gene02981:intron | 30.0% |
| ! | ATGGTCAGACTATTTTATTG+GGG | + | chr1.3:62863996-62864015 | MS.gene02981:intron | 30.0% |
| ! | CATGGTCAGACTATTTTATT+GGG | + | chr1.3:62863995-62864014 | MS.gene02981:intron | 30.0% |
| ! | CGTCTTTTTATATTTTGCCA+CGG | + | chr1.3:62864902-62864921 | MS.gene02981:CDS | 30.0% |
| ! | GATTATTTCTTGTGGTAACA+TGG | + | chr1.3:62865640-62865659 | MS.gene02981:intron | 30.0% |
| ! | GTATGTGAAAGACACATTTT+GGG | + | chr1.3:62864393-62864412 | MS.gene02981:CDS | 30.0% |
| ! | TCATGGTCAGACTATTTTAT+TGG | + | chr1.3:62863994-62864013 | MS.gene02981:intron | 30.0% |
| ! | TGTATGTGAAAGACACATTT+TGG | + | chr1.3:62864392-62864411 | MS.gene02981:CDS | 30.0% |
| ! | TTTTAGATTGGATGAGAGTT+CGG | + | chr1.3:62863577-62863596 | MS.gene02981:CDS | 30.0% |
| ! | TTTTGGTGAAGTCATAACTT+TGG | + | chr1.3:62863910-62863929 | MS.gene02981:intron | 30.0% |
| !!! | ATTTTGGGTTTTTTATGGCA+GGG | + | chr1.3:62865400-62865419 | MS.gene02981:intron | 30.0% |
| !!! | GTCTGATTTTGGGTTTTTTA+TGG | + | chr1.3:62865395-62865414 | MS.gene02981:intron | 30.0% |
| !!! | TTATTTTCCTTGCTGTTCTT+TGG | - | chr1.3:62865270-62865289 | None:intergenic | 30.0% |
| AAACGATCAAAGTCAAGAAG+AGG | + | chr1.3:62865290-62865309 | MS.gene02981:CDS | 35.0% | |
| AAGAAGGTTCCAGAAATGTT+GGG | + | chr1.3:62864199-62864218 | MS.gene02981:intron | 35.0% | |
| AATGTGTCTTTCACATACAC+AGG | - | chr1.3:62864391-62864410 | None:intergenic | 35.0% | |
| ACATCTTAGTGATGTAAACC+AGG | + | chr1.3:62865465-62865484 | MS.gene02981:CDS | 35.0% | |
| ACTCAAAGACAACATTGAAG+CGG | + | chr1.3:62864476-62864495 | MS.gene02981:CDS | 35.0% | |
| AGATGGTTAGAATGTATGCA+TGG | + | chr1.3:62864070-62864089 | MS.gene02981:intron | 35.0% | |
| AGGATGGTTGATCATTCTTA+TGG | - | chr1.3:62865727-62865746 | None:intergenic | 35.0% | |
| AGTATGTTCTTGTGTAATCC+TGG | - | chr1.3:62865118-62865137 | None:intergenic | 35.0% | |
| ATGAATTACGCTAATCGTGT+AGG | + | chr1.3:62863314-62863333 | MS.gene02981:CDS | 35.0% | |
| ATTCTGTGCAGAAAGTAAGA+CGG | + | chr1.3:62863729-62863748 | MS.gene02981:intron | 35.0% | |
| CAACTGTAACTCTCAGTAAT+GGG | + | chr1.3:62865172-62865191 | MS.gene02981:CDS | 35.0% | |
| CAGAACTTAATGATCAAGGT+GGG | + | chr1.3:62863621-62863640 | MS.gene02981:CDS | 35.0% | |
| CTTGTGGCATATAATGAAGA+AGG | + | chr1.3:62864183-62864202 | MS.gene02981:intron | 35.0% | |
| GAGTATTTACCCAACATTTC+TGG | - | chr1.3:62864211-62864230 | None:intergenic | 35.0% | |
| GGTAGAAATCTTCAATCTGT+GGG | + | chr1.3:62863653-62863672 | MS.gene02981:CDS | 35.0% | |
| GGTCTGAAGAAGAAGTTATT+AGG | + | chr1.3:62863285-62863304 | MS.gene02981:CDS | 35.0% | |
| GGTGATGAAAATATAGAACC+TGG | + | chr1.3:62865486-62865505 | MS.gene02981:intron | 35.0% | |
| GTTCAGAACAGGAAATATTC+TGG | - | chr1.3:62865602-62865621 | None:intergenic | 35.0% | |
| TAAGATCGAAAAGGAAAGCA+TGG | + | chr1.3:62864531-62864550 | MS.gene02981:CDS | 35.0% | |
| TACCTGTAAAAGTTCAGAAC+AGG | - | chr1.3:62865613-62865632 | None:intergenic | 35.0% | |
| TAGCATGTAATTGTGCAAGA+AGG | + | chr1.3:62863396-62863415 | MS.gene02981:CDS | 35.0% | |
| TCAGAACTTAATGATCAAGG+TGG | + | chr1.3:62863620-62863639 | MS.gene02981:CDS | 35.0% | |
| TCTGAGCAAAAGTGATTTCA+TGG | + | chr1.3:62864279-62864298 | MS.gene02981:CDS | 35.0% | |
| TCTTCGGTAATTATGCCATT+TGG | - | chr1.3:62864103-62864122 | None:intergenic | 35.0% | |
| TGGATGCTAAAACTCTTACT+TGG | + | chr1.3:62864038-62864057 | MS.gene02981:intron | 35.0% | |
| TGGTAGAAATCTTCAATCTG+TGG | + | chr1.3:62863652-62863671 | MS.gene02981:CDS | 35.0% | |
| TTACTTGGTTGTTCACAAGA+TGG | + | chr1.3:62864053-62864072 | MS.gene02981:intron | 35.0% | |
| TTTAGATTGGATGAGAGTTC+GGG | + | chr1.3:62863578-62863597 | MS.gene02981:CDS | 35.0% | |
| ! | AGGGCTGCATATGAATATTT+TGG | + | chr1.3:62863893-62863912 | MS.gene02981:intron | 35.0% |
| ! | CTTTTTATATTTTGCCACGG+TGG | + | chr1.3:62864905-62864924 | MS.gene02981:CDS | 35.0% |
| ! | GGTTCTATATTTTCATCACC+TGG | - | chr1.3:62865486-62865505 | None:intergenic | 35.0% |
| ! | GTCTATCAAAACACTTTTGC+AGG | + | chr1.3:62864240-62864259 | MS.gene02981:intron | 35.0% |
| ! | TGGCTCTTTAGAAGATAACA+CGG | - | chr1.3:62865091-62865110 | None:intergenic | 35.0% |
| ! | TGGTAAATGCTTTCTGGAAA+TGG | - | chr1.3:62864615-62864634 | None:intergenic | 35.0% |
| !! | AATGCTTGTGTAGCTTTAGA+TGG | + | chr1.3:62863488-62863507 | MS.gene02981:CDS | 35.0% |
| !! | GATGTCTTCCTTTTTGAAAG+AGG | - | chr1.3:62865201-62865220 | None:intergenic | 35.0% |
| !! | TACTAGCTTTGAAAGATTGG+AGG | + | chr1.3:62864687-62864706 | MS.gene02981:CDS | 35.0% |
| !! | TTCCTGTTCTGAACTTTTAC+AGG | + | chr1.3:62865608-62865627 | MS.gene02981:CDS | 35.0% |
| !!! | GATTTTGGGTTTTTTATGGC+AGG | + | chr1.3:62865399-62865418 | MS.gene02981:intron | 35.0% |
| AAAGCCAAAATGACTCACAC+AGG | - | chr1.3:62864587-62864606 | None:intergenic | 40.0% | |
| AAAGTAAGACGGCTAAGACT+TGG | + | chr1.3:62863740-62863759 | MS.gene02981:intron | 40.0% | |
| AAAGTGATTTCATGGAGAGG+TGG | + | chr1.3:62864287-62864306 | MS.gene02981:CDS | 40.0% | |
| AAGTAAGACGGCTAAGACTT+GGG | + | chr1.3:62863741-62863760 | MS.gene02981:intron | 40.0% | |
| AAGTGATTTCATGGAGAGGT+GGG | + | chr1.3:62864288-62864307 | MS.gene02981:CDS | 40.0% | |
| ATGATGGTTCACTCCAACAA+CGG | - | chr1.3:62863978-62863997 | None:intergenic | 40.0% | |
| ATGGGCATCCTCTTTCAAAA+AGG | + | chr1.3:62865190-62865209 | MS.gene02981:CDS | 40.0% | |
| ATGTTCTTGTGTAATCCTGG+AGG | - | chr1.3:62865115-62865134 | None:intergenic | 40.0% | |
| CAAAACTCCAAAGAACAGCA+AGG | + | chr1.3:62865260-62865279 | MS.gene02981:CDS | 40.0% | |
| CCAACTGTAACTCTCAGTAA+TGG | + | chr1.3:62865171-62865190 | MS.gene02981:CDS | 40.0% | |
| CCATTACTGAGAGTTACAGT+TGG | - | chr1.3:62865174-62865193 | None:intergenic | 40.0% | |
| CTTTGTGTGCTTAAGCTCAT+TGG | + | chr1.3:62864862-62864881 | MS.gene02981:CDS | 40.0% | |
| GAAAGTGATGAACAGGATCA+AGG | + | chr1.3:62865056-62865075 | MS.gene02981:CDS | 40.0% | |
| GAAGAAGGTTCCAGAAATGT+TGG | + | chr1.3:62864198-62864217 | MS.gene02981:intron | 40.0% | |
| GAGGTAAGATATTGCTTCGA+AGG | - | chr1.3:62863443-62863462 | None:intergenic | 40.0% | |
| GATCAAGGTGGGATTAATGT+TGG | + | chr1.3:62863632-62863651 | MS.gene02981:CDS | 40.0% | |
| GCAAAAGTGATTTCATGGAG+AGG | + | chr1.3:62864284-62864303 | MS.gene02981:CDS | 40.0% | |
| TACCTCGAAAACACAGTGTA+GGG | + | chr1.3:62863457-62863476 | MS.gene02981:CDS | 40.0% | |
| TGCCTGCAAAAAGAACACAT+GGG | - | chr1.3:62865699-62865718 | None:intergenic | 40.0% | |
| TGGCAATGGTAAATGCTTTC+TGG | - | chr1.3:62864621-62864640 | None:intergenic | 40.0% | |
| TTACCTCGAAAACACAGTGT+AGG | + | chr1.3:62863456-62863475 | MS.gene02981:CDS | 40.0% | |
| TTAGATTGGATGAGAGTTCG+GGG | + | chr1.3:62863579-62863598 | MS.gene02981:CDS | 40.0% | |
| ! | ATTGCCTGTGTGAGTCATTT+TGG | + | chr1.3:62864580-62864599 | MS.gene02981:CDS | 40.0% |
| ! | CAAAACACTTTTGCAGGATG+TGG | + | chr1.3:62864246-62864265 | MS.gene02981:intron | 40.0% |
| ! | CAATCTAAAATACCGTCCTC+TGG | - | chr1.3:62863567-62863586 | None:intergenic | 40.0% |
| ! | TACGCTAATCGTGTAGGTTT+TGG | + | chr1.3:62863320-62863339 | MS.gene02981:CDS | 40.0% |
| ! | TTTATATTTTGCCACGGTGG+AGG | + | chr1.3:62864908-62864927 | MS.gene02981:CDS | 40.0% |
| !! | CAGAGGACGGTATTTTAGAT+TGG | + | chr1.3:62863565-62863584 | MS.gene02981:CDS | 40.0% |
| AACTTGGTCAAACCAGAGGA+CGG | + | chr1.3:62863552-62863571 | MS.gene02981:CDS | 45.0% | |
| ACAATCCTAGTCACGTGGTT+TGG | - | chr1.3:62865147-62865166 | None:intergenic | 45.0% | |
| AGTGATTTCATGGAGAGGTG+GGG | + | chr1.3:62864289-62864308 | MS.gene02981:CDS | 45.0% | |
| ATGCATGGACATGCTCCAAA+TGG | + | chr1.3:62864085-62864104 | MS.gene02981:intron | 45.0% | |
| CATGAACTTGGTCAAACCAG+AGG | + | chr1.3:62863548-62863567 | MS.gene02981:CDS | 45.0% | |
| GACAACATTGAAGCGGTTTG+TGG | + | chr1.3:62864483-62864502 | MS.gene02981:CDS | 45.0% | |
| GATCAACAATCCTAGTCACG+TGG | - | chr1.3:62865152-62865171 | None:intergenic | 45.0% | |
| GTGCCTGCAAAAAGAACACA+TGG | - | chr1.3:62865700-62865719 | None:intergenic | 45.0% | |
| GTGTGCAATATTGTCGAACG+TGG | + | chr1.3:62864018-62864037 | MS.gene02981:intron | 45.0% | |
| GTGTTGAGATGAATGGGTGT+GGG | + | chr1.3:62863675-62863694 | MS.gene02981:CDS | 45.0% | |
| GTTGTTGGAGTGAACCATCA+TGG | + | chr1.3:62863977-62863996 | MS.gene02981:intron | 45.0% | |
| TCACATACACAGGAACCCAA+CGG | - | chr1.3:62864381-62864400 | None:intergenic | 45.0% | |
| TCTTGTGTAATCCTGGAGGA+TGG | - | chr1.3:62865111-62865130 | None:intergenic | 45.0% | |
| TGATGGTTCACTCCAACAAC+GGG | - | chr1.3:62863977-62863996 | None:intergenic | 45.0% | |
| TTCCTAAAGCTCGTCATCGA+TGG | + | chr1.3:62864158-62864177 | MS.gene02981:intron | 45.0% | |
| TTTACATACTTCCTCCACCG+TGG | - | chr1.3:62864922-62864941 | None:intergenic | 45.0% | |
| ! | GATCGAAAAGGAAAGCATGG+CGG | + | chr1.3:62864534-62864553 | MS.gene02981:CDS | 45.0% |
| ! | GGTGGAGGAAGTATGTAAAG+CGG | + | chr1.3:62864923-62864942 | MS.gene02981:CDS | 45.0% |
| ! | GTGAAAGACACATTTTGGGC+TGG | + | chr1.3:62864397-62864416 | MS.gene02981:CDS | 45.0% |
| ! | TGCCCATGTGTTCTTTTTGC+AGG | + | chr1.3:62865694-62865713 | MS.gene02981:intron | 45.0% |
| !! | CTGTGGGTGTTGAGATGAAT+GGG | + | chr1.3:62863669-62863688 | MS.gene02981:CDS | 45.0% |
| !! | TCGATGACGAGCTTTAGGAA+AGG | - | chr1.3:62864158-62864177 | None:intergenic | 45.0% |
| !! | TCTGTGGGTGTTGAGATGAA+TGG | + | chr1.3:62863668-62863687 | MS.gene02981:CDS | 45.0% |
| ATTTGATGAGCGGCACCGTT+GGG | + | chr1.3:62864363-62864382 | MS.gene02981:CDS | 50.0% | |
| CAACTCCAAACCACGTGACT+AGG | + | chr1.3:62865139-62865158 | MS.gene02981:CDS | 50.0% | |
| CACCATCGATGACGAGCTTT+AGG | - | chr1.3:62864163-62864182 | None:intergenic | 50.0% | |
| CGAAAACACAGTGTAGGGCT+AGG | + | chr1.3:62863462-62863481 | MS.gene02981:CDS | 50.0% | |
| GATGGTTCACTCCAACAACG+GGG | - | chr1.3:62863976-62863995 | None:intergenic | 50.0% | |
| GGGTGTGGGAATCTTACTTC+TGG | + | chr1.3:62863689-62863708 | MS.gene02981:CDS | 50.0% | |
| TATTTGATGAGCGGCACCGT+TGG | + | chr1.3:62864362-62864381 | MS.gene02981:CDS | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | + | chr1.3:62863874-62863893 | MS.gene02981:intron | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | + | chr1.3:62863873-62863892 | MS.gene02981:intron | 50.0% | |
| ! | AGCCCTACACTGTGTTTTCG+AGG | - | chr1.3:62863462-62863481 | None:intergenic | 50.0% |
| ! | CTGGAATGTCGACTGCACAA+CGG | + | chr1.3:62864416-62864435 | MS.gene02981:CDS | 50.0% |
| ! | CTTCTAAAGAGCCATCCTCC+AGG | + | chr1.3:62865097-62865116 | MS.gene02981:CDS | 50.0% |
| ! | GGTGTTGAGATGAATGGGTG+TGG | + | chr1.3:62863674-62863693 | MS.gene02981:CDS | 50.0% |
| ACTCCAACAACGGGGACCAA+TGG | - | chr1.3:62863968-62863987 | None:intergenic | 55.0% | |
| AGACGGCTAAGACTTGGGAG+AGG | + | chr1.3:62863746-62863765 | MS.gene02981:intron | 55.0% | |
| CTCGTCATCGATGGTGCTTG+TGG | + | chr1.3:62864167-62864186 | MS.gene02981:intron | 55.0% | |
| GTTCGGGGACTCATGTAGAG+AGG | + | chr1.3:62863594-62863613 | MS.gene02981:CDS | 55.0% | |
| TTGCCATTGGTCCCCGTTGT+TGG | + | chr1.3:62863962-62863981 | MS.gene02981:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 62863275 | 62865751 | 62863275 | ID=MS.gene02981 |
| chr1.3 | mRNA | 62863275 | 62865751 | 62863275 | ID=MS.gene02981.t1;Parent=MS.gene02981 |
| chr1.3 | exon | 62863275 | 62863742 | 62863275 | ID=MS.gene02981.t1.exon1;Parent=MS.gene02981.t1 |
| chr1.3 | CDS | 62863275 | 62863742 | 62863275 | ID=cds.MS.gene02981.t1;Parent=MS.gene02981.t1 |
| chr1.3 | exon | 62864262 | 62865311 | 62864262 | ID=MS.gene02981.t1.exon2;Parent=MS.gene02981.t1 |
| chr1.3 | CDS | 62864262 | 62865311 | 62864262 | ID=cds.MS.gene02981.t1;Parent=MS.gene02981.t1 |
| chr1.3 | exon | 62865421 | 62865486 | 62865421 | ID=MS.gene02981.t1.exon3;Parent=MS.gene02981.t1 |
| chr1.3 | CDS | 62865421 | 62865486 | 62865421 | ID=cds.MS.gene02981.t1;Parent=MS.gene02981.t1 |
| chr1.3 | exon | 62865573 | 62865629 | 62865573 | ID=MS.gene02981.t1.exon4;Parent=MS.gene02981.t1 |
| chr1.3 | CDS | 62865573 | 62865629 | 62865573 | ID=cds.MS.gene02981.t1;Parent=MS.gene02981.t1 |
| chr1.3 | exon | 62865716 | 62865751 | 62865716 | ID=MS.gene02981.t1.exon5;Parent=MS.gene02981.t1 |
| chr1.3 | CDS | 62865716 | 62865751 | 62865716 | ID=cds.MS.gene02981.t1;Parent=MS.gene02981.t1 |
| Gene Sequence |
| Protein sequence |
