AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029812

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029812.t1 MTR_1g063940 96.927 358 11 0 6 363 106 463 0.0 716
MS.gene029812.t1 MTR_1g063940 96.927 358 11 0 6 363 114 471 0.0 716
MS.gene029812.t1 MTR_1g063940 96.648 358 11 1 6 363 106 462 0.0 710
MS.gene029812.t1 MTR_8g020330 40.741 108 62 2 237 343 534 640 7.27e-18 85.5
MS.gene029812.t1 MTR_8g020330 40.741 108 62 2 237 343 543 649 7.68e-18 85.5
MS.gene029812.t1 MTR_8g020330 40.741 108 62 2 237 343 539 645 7.86e-18 85.5
MS.gene029812.t1 MTR_8g020330 40.741 108 62 2 237 343 538 644 8.53e-18 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029812.t1 AT2G37025 50.000 114 56 1 221 333 271 384 2.87e-31 122
MS.gene029812.t1 AT2G37025 50.000 114 56 1 221 333 271 384 2.87e-31 122
MS.gene029812.t1 AT2G37025 50.000 114 56 1 221 333 271 384 2.87e-31 122
MS.gene029812.t1 AT1G72650 46.739 92 48 1 237 328 530 620 8.87e-20 91.3
MS.gene029812.t1 AT1G72650 46.739 92 48 1 237 328 536 626 9.61e-20 91.3
MS.gene029812.t1 AT1G17460 29.741 232 96 5 131 299 306 533 4.89e-18 85.9
MS.gene029812.t1 AT1G17460 29.741 232 96 5 131 299 327 554 6.68e-18 85.5
MS.gene029812.t1 AT1G17460 29.741 232 96 5 131 299 347 574 8.21e-18 85.5

Find 67 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATAGTACCTCTTTCTT+TGG 0.210015 1.2:-48862401 None:intergenic
GTGCAGTACAGGCTCTTAAA+AGG 0.298577 1.2:-48863441 None:intergenic
ACTCGGCTAGCCACACTAAA+AGG 0.320293 1.2:-48863716 None:intergenic
GGATTTAGATTGTGTACTAT+TGG 0.323521 1.2:-48861937 None:intergenic
TCGGACTCTTCCGAGGAAAA+AGG 0.330555 1.2:-48863145 None:intergenic
TTGTTTCGTCGCTTTGGGTA+TGG 0.332970 1.2:-48863761 None:intergenic
GATTTAGATTGTGTACTATT+GGG 0.352272 1.2:-48861936 None:intergenic
CTCATCCAGAGATTTAATTT+CGG 0.364384 1.2:-48861958 None:intergenic
TGCTTATGAAGACTCGCCTT+TGG 0.384096 1.2:+48861833 MS.gene029812:CDS
TGTTTCGTCGCTTTGGGTAT+GGG 0.398644 1.2:-48863760 None:intergenic
TAAATCCGAAATTAAATCTC+TGG 0.403561 1.2:+48861953 MS.gene029812:CDS
TGCATGTGGAGGGTATTTCT+TGG 0.407708 1.2:+48861675 MS.gene029812:CDS
TACATGCAATCTACATTTGA+TGG 0.413497 1.2:-48862029 None:intergenic
TCTACATTTGATGGTTGAGT+TGG 0.429648 1.2:-48862020 None:intergenic
ATTGATGGCATATCTCAATA+TGG 0.429927 1.2:+48863256 MS.gene029812:CDS
AGTCATTCTCCAGGATTTAG+TGG 0.434512 1.2:+48861873 MS.gene029812:CDS
CCCTGACATCTGTGGGAGTT+CGG 0.437149 1.2:-48863330 None:intergenic
TATACCTCTGAGTAGGCTTT+CGG 0.437182 1.2:-48862187 None:intergenic
ACCGAACTCCCACAGATGTC+AGG 0.442198 1.2:+48863329 MS.gene029812:CDS
CACTAAAAGGTAAGATCCGC+GGG 0.452158 1.2:-48863703 None:intergenic
GCATGTGGAGGGTATTTCTT+GGG 0.460808 1.2:+48861676 MS.gene029812:CDS
TTTCGGAATCTCTTCTCTCT+AGG 0.461041 1.2:-48862170 None:intergenic
TAGTGTGGCTAGCCGAGTGC+TGG 0.464765 1.2:+48863721 MS.gene029812:CDS
ATGATACACATGGTGTCTTC+AGG 0.468776 1.2:+48861991 MS.gene029812:CDS
AACAATGGTTATCCTTTAGC+TGG 0.469343 1.2:+48862089 MS.gene029812:CDS
GGCTAGCCGAGTGCTGGAAT+TGG 0.480997 1.2:+48863727 MS.gene029812:CDS
GAAGTGACAAAGTTGATTGA+TGG 0.483810 1.2:+48863241 MS.gene029812:CDS
GCTGAATTTCTGTGCAGTAC+AGG 0.484370 1.2:-48863452 None:intergenic
CCGCTACTAGACTCGTCGCT+TGG 0.485164 1.2:-48862332 None:intergenic
CTACTGGTGTAAAACGTAAA+CGG 0.490582 1.2:+48862252 MS.gene029812:CDS
AATTCAGAAAGTCATTCTCC+AGG 0.495964 1.2:+48861864 MS.gene029812:CDS
TATGGTCCATCTAGTAGTCT+TGG 0.496122 1.2:+48863806 MS.gene029812:CDS
GAAGAAAGAATCAAAGGATG+TGG 0.504028 1.2:+48863209 MS.gene029812:CDS
TGGTGTCAAATGTTCATCCT+CGG 0.505342 1.2:-48863164 None:intergenic
GGCATATCTCAATATGGAGT+TGG 0.506463 1.2:+48863262 MS.gene029812:CDS
GAAATACCCTCCACATGCAT+TGG 0.510672 1.2:-48861671 None:intergenic
CTCAATATGGAGTTGGTCGA+TGG 0.518114 1.2:+48863269 MS.gene029812:CDS
AGATTCACCAGTGAAAACTA+TGG 0.522871 1.2:+48863788 MS.gene029812:CDS
TGAAGACACCATGTGTATCA+TGG 0.526838 1.2:-48861989 None:intergenic
GTGCTACTTCCACTAAATCC+TGG 0.534846 1.2:-48861882 None:intergenic
GACAATATACTACCAGCTAA+AGG 0.542357 1.2:-48862101 None:intergenic
CAAGAAGCATCCAAAGAAAG+AGG 0.542469 1.2:+48862391 MS.gene029812:CDS
TTTAGTGGAAGTAGCACTGT+TGG 0.554801 1.2:+48861888 MS.gene029812:CDS
AAGATCGAAGAAAGAATCAA+AGG 0.561345 1.2:+48863203 MS.gene029812:CDS
CGGAATCTCTTCTCTCTAGG+TGG 0.568097 1.2:-48862167 None:intergenic
TAGTATATTGTCTTGCAAGA+AGG 0.569299 1.2:+48862112 MS.gene029812:CDS
AGTGGAAGTAGCACTGTTGG+TGG 0.573972 1.2:+48861891 MS.gene029812:CDS
TCTTCAATATACCTCTGAGT+AGG 0.580112 1.2:-48862194 None:intergenic
GTTTAGCCAATTCCAGCACT+CGG 0.584124 1.2:-48863733 None:intergenic
GTGGAAGTAGCACTGTTGGT+GGG 0.586298 1.2:+48861892 MS.gene029812:CDS
TACAGTACCCTGACATCTGT+GGG 0.600151 1.2:-48863337 None:intergenic
TTCATCCTCGGACTCTTCCG+AGG 0.613472 1.2:-48863152 None:intergenic
CCGAACTCCCACAGATGTCA+GGG 0.622447 1.2:+48863330 MS.gene029812:CDS
GAAGACACCATGTGTATCAT+GGG 0.623115 1.2:-48861988 None:intergenic
TATGATTTATGCAGGACAAG+TGG 0.628551 1.2:+48863413 MS.gene029812:intron
GTACAGTACCCTGACATCTG+TGG 0.628681 1.2:-48863338 None:intergenic
TTGGCAAAAGAAATTTACGT+AGG 0.641798 1.2:+48863825 MS.gene029812:CDS
ACACTAAAAGGTAAGATCCG+CGG 0.650416 1.2:-48863704 None:intergenic
CATCTGCATGAGTTGAACAA+TGG 0.658137 1.2:+48862074 MS.gene029812:CDS
ACAGAAATTCAGCAAGAACG+AGG 0.709656 1.2:+48863462 MS.gene029812:CDS
ACAGTCACCCATGATACACA+TGG 0.714461 1.2:+48861981 MS.gene029812:CDS
CCAAGCGACGAGTCTAGTAG+CGG 0.719801 1.2:+48862332 MS.gene029812:CDS
GATTCCGAAAGCCTACTCAG+AGG 0.733180 1.2:+48862183 MS.gene029812:CDS
AAGGTTGAGATACTAGAACA+CGG 0.760256 1.2:+48861810 MS.gene029812:intron
CTGGTGTAAAACGTAAACGG+CGG 0.772509 1.2:+48862255 MS.gene029812:CDS
ACTAAAAGGTAAGATCCGCG+GGG 0.799147 1.2:-48863702 None:intergenic
AAAATGATGAGACTGCCCCG+CGG 0.836893 1.2:+48863687 MS.gene029812:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATCTTCATTTACTAA+AGG - chr1.2:48862453-48862472 None:intergenic 15.0%
!! ATATTTAGAAAACACAAATT+TGG - chr1.2:48863396-48863415 None:intergenic 15.0%
!!! AAAATAAATTTTACGAGAAA+TGG - chr1.2:48863621-48863640 None:intergenic 15.0%
!! AGTTAATGTAAACAATCATT+TGG + chr1.2:48863648-48863667 MS.gene029812:intron 20.0%
!! TTTCTAAATATGATTTATGC+AGG + chr1.2:48863405-48863424 MS.gene029812:intron 20.0%
!!! CAATTTGTTTTATCAAACAA+CGG - chr1.2:48863093-48863112 None:intergenic 20.0%
!!! TCAATTCTTTAGTTTTTGTA+TGG - chr1.2:48862304-48862323 None:intergenic 20.0%
!!! TTCTCGTAAAATTTATTTTG+AGG + chr1.2:48863622-48863641 MS.gene029812:intron 20.0%
!!! TTTTTAATGGCAATACAAAA+GGG - chr1.2:48862495-48862514 None:intergenic 20.0%
!!! TTTTTTAATGGCAATACAAA+AGG - chr1.2:48862496-48862515 None:intergenic 20.0%
! AAAACACAAATTTGGAAGAA+AGG - chr1.2:48863388-48863407 None:intergenic 25.0%
! ACAGAATAAAGTTTCAGAAA+AGG - chr1.2:48863503-48863522 None:intergenic 25.0%
! ACTAATTACTTAATGTGACA+TGG + chr1.2:48863563-48863582 MS.gene029812:intron 25.0%
! CAAATCAAAATCTGTAGATT+GGG - chr1.2:48861787-48861806 None:intergenic 25.0%
! GATTTAGATTGTGTACTATT+GGG - chr1.2:48861939-48861958 None:intergenic 25.0%
! TAAATCCGAAATTAAATCTC+TGG + chr1.2:48861953-48861972 MS.gene029812:CDS 25.0%
! TATAAATTCTGCAATTCTGA+AGG + chr1.2:48862885-48862904 MS.gene029812:intron 25.0%
!! TCTGAATTTGAATTTTCCAA+AGG - chr1.2:48861852-48861871 None:intergenic 25.0%
!! TTTTACTATGATGCTTTCAT+AGG + chr1.2:48861719-48861738 MS.gene029812:intron 25.0%
!!! AAAGAAAAAGTATCAACTAC+TGG + chr1.2:48862236-48862255 MS.gene029812:CDS 25.0%
!!! AAGAGGTACTATTTTCTTTT+TGG + chr1.2:48862408-48862427 MS.gene029812:intron 25.0%
!!! AAGTTTTTGTTTTCTTCTGA+AGG + chr1.2:48863304-48863323 MS.gene029812:CDS 25.0%
!!! AGAGGTACTATTTTCTTTTT+GGG + chr1.2:48862409-48862428 MS.gene029812:intron 25.0%
!!! GTTTTACTTTTTCTATGTTC+TGG + chr1.2:48862570-48862589 MS.gene029812:intron 25.0%
!!! TCTACAACTGATTTTGTAAT+TGG + chr1.2:48862908-48862927 MS.gene029812:intron 25.0%
AAGATCGAAGAAAGAATCAA+AGG + chr1.2:48863203-48863222 MS.gene029812:CDS 30.0%
ACTTCACACATCAATTCATT+AGG - chr1.2:48862697-48862716 None:intergenic 30.0%
ATCAAATCTTCACGAATCAT+AGG + chr1.2:48863525-48863544 MS.gene029812:intron 30.0%
ATCATTTATCATCTTCATCG+TGG + chr1.2:48862822-48862841 MS.gene029812:intron 30.0%
CCAAATCAAAATCTGTAGAT+TGG - chr1.2:48861788-48861807 None:intergenic 30.0%
CTTCACACATCAATTCATTA+GGG - chr1.2:48862696-48862715 None:intergenic 30.0%
GAAAATAGTACCTCTTTCTT+TGG - chr1.2:48862404-48862423 None:intergenic 30.0%
GGATTTAGATTGTGTACTAT+TGG - chr1.2:48861940-48861959 None:intergenic 30.0%
GTTGAAACAAAATGGTTACA+TGG + chr1.2:48862935-48862954 MS.gene029812:intron 30.0%
TACATGCAATCTACATTTGA+TGG - chr1.2:48862032-48862051 None:intergenic 30.0%
TACGAGAAATGGCATATTTA+CGG - chr1.2:48863610-48863629 None:intergenic 30.0%
TAGTATATTGTCTTGCAAGA+AGG + chr1.2:48862112-48862131 MS.gene029812:CDS 30.0%
TTCACACATCAATTCATTAG+GGG - chr1.2:48862695-48862714 None:intergenic 30.0%
TTGGCAAAAGAAATTTACGT+AGG + chr1.2:48863825-48863844 MS.gene029812:CDS 30.0%
! AACAATCATTTGGTGATTGT+AGG + chr1.2:48863658-48863677 MS.gene029812:intron 30.0%
! ATTGATGGCATATCTCAATA+TGG + chr1.2:48863256-48863275 MS.gene029812:CDS 30.0%
! CTCATCCAGAGATTTAATTT+CGG - chr1.2:48861961-48861980 None:intergenic 30.0%
! TTGGACAAGTTGAAACAAAA+TGG + chr1.2:48862927-48862946 MS.gene029812:intron 30.0%
!! GAGGTACTATTTTCTTTTTG+GGG + chr1.2:48862410-48862429 MS.gene029812:intron 30.0%
!!! AAGGGGGCTTTTTTTTTTAA+TGG - chr1.2:48862508-48862527 None:intergenic 30.0%
!!! CCAATCTACAGATTTTGATT+TGG + chr1.2:48861785-48861804 MS.gene029812:intron 30.0%
!!! CTTTTTCTATGTTCTGGTTT+CGG + chr1.2:48862576-48862595 MS.gene029812:intron 30.0%
!!! TACAGATTTTGATTTGGCAA+AGG + chr1.2:48861791-48861810 MS.gene029812:intron 30.0%
AACAATGGTTATCCTTTAGC+TGG + chr1.2:48862089-48862108 MS.gene029812:CDS 35.0%
AAGGACCTAATATTCATGTC+TGG + chr1.2:48863046-48863065 MS.gene029812:intron 35.0%
AAGGTTGAGATACTAGAACA+CGG + chr1.2:48861810-48861829 MS.gene029812:intron 35.0%
AATTCAGAAAGTCATTCTCC+AGG + chr1.2:48861864-48861883 MS.gene029812:CDS 35.0%
AGATTCACCAGTGAAAACTA+TGG + chr1.2:48863788-48863807 MS.gene029812:CDS 35.0%
AGCATAACGAAGCAAATTCA+TGG - chr1.2:48862741-48862760 None:intergenic 35.0%
CTACTGGTGTAAAACGTAAA+CGG + chr1.2:48862252-48862271 MS.gene029812:CDS 35.0%
GAACATTTGACACCAAAAAG+AGG + chr1.2:48863172-48863191 MS.gene029812:CDS 35.0%
GAAGAAAGAATCAAAGGATG+TGG + chr1.2:48863209-48863228 MS.gene029812:CDS 35.0%
GACAATATACTACCAGCTAA+AGG - chr1.2:48862104-48862123 None:intergenic 35.0%
GATAACTGCATATCAATGCA+AGG + chr1.2:48863027-48863046 MS.gene029812:intron 35.0%
GGTCATTCAACTAGATTTAC+AGG - chr1.2:48862674-48862693 None:intergenic 35.0%
TATGATTTATGCAGGACAAG+TGG + chr1.2:48863413-48863432 MS.gene029812:intron 35.0%
TCTTCAATATACCTCTGAGT+AGG - chr1.2:48862197-48862216 None:intergenic 35.0%
! GAAGTGACAAAGTTGATTGA+TGG + chr1.2:48863241-48863260 MS.gene029812:CDS 35.0%
! TCTACATTTGATGGTTGAGT+TGG - chr1.2:48862023-48862042 None:intergenic 35.0%
! TCTTTTGATCTGCCTCTTTT+TGG - chr1.2:48863187-48863206 None:intergenic 35.0%
!! TCTTTTTGTTTCGTCGCTTT+GGG - chr1.2:48863769-48863788 None:intergenic 35.0%
ACACTAAAAGGTAAGATCCG+CGG - chr1.2:48863707-48863726 None:intergenic 40.0%
ACAGAAATTCAGCAAGAACG+AGG + chr1.2:48863462-48863481 MS.gene029812:CDS 40.0%
ACTCTCCATCTGACTACAAA+GGG - chr1.2:48862526-48862545 None:intergenic 40.0%
AGTCATTCTCCAGGATTTAG+TGG + chr1.2:48861873-48861892 MS.gene029812:CDS 40.0%
ATGATACACATGGTGTCTTC+AGG + chr1.2:48861991-48862010 MS.gene029812:CDS 40.0%
CGAATCATAGGAACTTCAGT+TGG + chr1.2:48863537-48863556 MS.gene029812:intron 40.0%
GAAGACACCATGTGTATCAT+GGG - chr1.2:48861991-48862010 None:intergenic 40.0%
GCAGACCAGACATGAATATT+AGG - chr1.2:48863054-48863073 None:intergenic 40.0%
GGCATATCTCAATATGGAGT+TGG + chr1.2:48863262-48863281 MS.gene029812:CDS 40.0%
TACTCTCCATCTGACTACAA+AGG - chr1.2:48862527-48862546 None:intergenic 40.0%
TATACCTCTGAGTAGGCTTT+CGG - chr1.2:48862190-48862209 None:intergenic 40.0%
TATGGTCCATCTAGTAGTCT+TGG + chr1.2:48863806-48863825 MS.gene029812:CDS 40.0%
TGAAGACACCATGTGTATCA+TGG - chr1.2:48861992-48862011 None:intergenic 40.0%
TTTAGTGGAAGTAGCACTGT+TGG + chr1.2:48861888-48861907 MS.gene029812:CDS 40.0%
TTTCGGAATCTCTTCTCTCT+AGG - chr1.2:48862173-48862192 None:intergenic 40.0%
! AGATGGACCATAGTTTTCAC+TGG - chr1.2:48863798-48863817 None:intergenic 40.0%
! CATCTGCATGAGTTGAACAA+TGG + chr1.2:48862074-48862093 MS.gene029812:CDS 40.0%
! CTTTTGCCAAGACTACTAGA+TGG - chr1.2:48863815-48863834 None:intergenic 40.0%
! TGGTGTCAAATGTTCATCCT+CGG - chr1.2:48863167-48863186 None:intergenic 40.0%
!! CAAGAAGCATCCAAAGAAAG+AGG + chr1.2:48862391-48862410 MS.gene029812:CDS 40.0%
!! CTCTTTTTGTTTCGTCGCTT+TGG - chr1.2:48863770-48863789 None:intergenic 40.0%
ACAGTCACCCATGATACACA+TGG + chr1.2:48861981-48862000 MS.gene029812:CDS 45.0%
ACTAAAAGGTAAGATCCGCG+GGG - chr1.2:48863705-48863724 None:intergenic 45.0%
CACTAAAAGGTAAGATCCGC+GGG - chr1.2:48863706-48863725 None:intergenic 45.0%
CTCTCCATCTGACTACAAAG+GGG - chr1.2:48862525-48862544 None:intergenic 45.0%
CTGGTGTAAAACGTAAACGG+CGG + chr1.2:48862255-48862274 MS.gene029812:CDS 45.0%
GCTGAATTTCTGTGCAGTAC+AGG - chr1.2:48863455-48863474 None:intergenic 45.0%
GTGCAGTACAGGCTCTTAAA+AGG - chr1.2:48863444-48863463 None:intergenic 45.0%
GTTTAGCCAATTCCAGCACT+CGG - chr1.2:48863736-48863755 None:intergenic 45.0%
TACAGTACCCTGACATCTGT+GGG - chr1.2:48863340-48863359 None:intergenic 45.0%
TCTCCATCTGACTACAAAGG+GGG - chr1.2:48862524-48862543 None:intergenic 45.0%
TGCTTATGAAGACTCGCCTT+TGG + chr1.2:48861833-48861852 MS.gene029812:CDS 45.0%
! CTCAATATGGAGTTGGTCGA+TGG + chr1.2:48863269-48863288 MS.gene029812:CDS 45.0%
! GCGGATCTTACCTTTTAGTG+TGG + chr1.2:48863706-48863725 MS.gene029812:CDS 45.0%
! TGACTACGAGCCTTTTTCCT+CGG + chr1.2:48863135-48863154 MS.gene029812:CDS 45.0%
! TGTTTCGTCGCTTTGGGTAT+GGG - chr1.2:48863763-48863782 None:intergenic 45.0%
! TTGTTTCGTCGCTTTGGGTA+TGG - chr1.2:48863764-48863783 None:intergenic 45.0%
!! GCATGTGGAGGGTATTTCTT+GGG + chr1.2:48861676-48861695 MS.gene029812:CDS 45.0%
!! GTGCTACTTCCACTAAATCC+TGG - chr1.2:48861885-48861904 None:intergenic 45.0%
!! TGCATGTGGAGGGTATTTCT+TGG + chr1.2:48861675-48861694 MS.gene029812:CDS 45.0%
AAAATGATGAGACTGCCCCG+CGG + chr1.2:48863687-48863706 MS.gene029812:CDS 50.0%
AAGCCCCCTTTGTAGTCAGA+TGG + chr1.2:48862518-48862537 MS.gene029812:intron 50.0%
AGTGGAAGTAGCACTGTTGG+TGG + chr1.2:48861891-48861910 MS.gene029812:CDS 50.0%
CGGAATCTCTTCTCTCTAGG+TGG - chr1.2:48862170-48862189 None:intergenic 50.0%
CTCCTCTCTTTGCCTGAACA+GGG + chr1.2:48862764-48862783 MS.gene029812:intron 50.0%
CTGTTCAGGCAAAGAGAGGA+GGG - chr1.2:48862765-48862784 None:intergenic 50.0%
GATTCCGAAAGCCTACTCAG+AGG + chr1.2:48862183-48862202 MS.gene029812:CDS 50.0%
GTACAGTACCCTGACATCTG+TGG - chr1.2:48863341-48863360 None:intergenic 50.0%
GTGGAAGTAGCACTGTTGGT+GGG + chr1.2:48861892-48861911 MS.gene029812:CDS 50.0%
TCCTCTCTTTGCCTGAACAG+GGG + chr1.2:48862765-48862784 MS.gene029812:intron 50.0%
TCGGACTCTTCCGAGGAAAA+AGG - chr1.2:48863148-48863167 None:intergenic 50.0%
! ACTCGGCTAGCCACACTAAA+AGG - chr1.2:48863719-48863738 None:intergenic 50.0%
! TTTTTCCTCGGAAGAGTCCG+AGG + chr1.2:48863147-48863166 MS.gene029812:CDS 50.0%
ACCGAACTCCCACAGATGTC+AGG + chr1.2:48863329-48863348 MS.gene029812:CDS 55.0%
ATGAAGCCAAGCCCCTGTTC+AGG - chr1.2:48862779-48862798 None:intergenic 55.0%
CCAAGCGACGAGTCTAGTAG+CGG + chr1.2:48862332-48862351 MS.gene029812:CDS 55.0%
CCCTGACATCTGTGGGAGTT+CGG - chr1.2:48863333-48863352 None:intergenic 55.0%
CCGAACTCCCACAGATGTCA+GGG + chr1.2:48863330-48863349 MS.gene029812:CDS 55.0%
CCTCCTCTCTTTGCCTGAAC+AGG + chr1.2:48862763-48862782 MS.gene029812:intron 55.0%
CCTGTTCAGGCAAAGAGAGG+AGG - chr1.2:48862766-48862785 None:intergenic 55.0%
TCTTTGCCTGAACAGGGGCT+TGG + chr1.2:48862770-48862789 MS.gene029812:intron 55.0%
TTCATCCTCGGACTCTTCCG+AGG - chr1.2:48863155-48863174 None:intergenic 55.0%
CCGCTACTAGACTCGTCGCT+TGG - chr1.2:48862335-48862354 None:intergenic 60.0%
GCCCCTGTTCAGGCAAAGAG+AGG - chr1.2:48862769-48862788 None:intergenic 60.0%
! TAGTGTGGCTAGCCGAGTGC+TGG + chr1.2:48863721-48863740 MS.gene029812:CDS 60.0%
!! GGCTAGCCGAGTGCTGGAAT+TGG + chr1.2:48863727-48863746 MS.gene029812:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 48861674 48863862 48861674 ID=MS.gene029812
chr1.2 mRNA 48861674 48863862 48861674 ID=MS.gene029812.t1;Parent=MS.gene029812
chr1.2 exon 48861674 48861697 48861674 ID=MS.gene029812.t1.exon1;Parent=MS.gene029812.t1
chr1.2 CDS 48861674 48861697 48861674 ID=cds.MS.gene029812.t1;Parent=MS.gene029812.t1
chr1.2 exon 48861813 48862412 48861813 ID=MS.gene029812.t1.exon2;Parent=MS.gene029812.t1
chr1.2 CDS 48861813 48862412 48861813 ID=cds.MS.gene029812.t1;Parent=MS.gene029812.t1
chr1.2 exon 48863124 48863351 48863124 ID=MS.gene029812.t1.exon3;Parent=MS.gene029812.t1
chr1.2 CDS 48863124 48863351 48863124 ID=cds.MS.gene029812.t1;Parent=MS.gene029812.t1
chr1.2 exon 48863427 48863483 48863427 ID=MS.gene029812.t1.exon4;Parent=MS.gene029812.t1
chr1.2 CDS 48863427 48863483 48863427 ID=cds.MS.gene029812.t1;Parent=MS.gene029812.t1
chr1.2 exon 48863680 48863862 48863680 ID=MS.gene029812.t1.exon5;Parent=MS.gene029812.t1
chr1.2 CDS 48863680 48863862 48863680 ID=cds.MS.gene029812.t1;Parent=MS.gene029812.t1
Gene Sequence

>MS.gene029812

ATGCATGTGGAGGGTATTTCTTGGGTAAGCTATCATAATGCTATATTTTACTATGATGCTTTCATAGGAAAAAATGATAAGTTTCTGTTTTTCACATTGTAATTTATTTTCCCAATCTACAGATTTTGATTTGGCAAAGGTTGAGATACTAGAACACGGTGCTTATGAAGACTCGCCTTTGGAAAATTCAAATTCAGAAAGTCATTCTCCAGGATTTAGTGGAAGTAGCACTGTTGGTGGGATATCAGAATCAACAAAAGCACCCAATAGTACACAATCTAAATCCGAAATTAAATCTCTGGATGAGACAGTCACCCATGATACACATGGTGTCTTCAGGAACAATCCAACTCAACCATCAAATGTAGATTGCATGTACAACATTTCACTTGATATACAGCATCTGCATGAGTTGAACAATGGTTATCCTTTAGCTGGTAGTATATTGTCTTGCAAGAAGGAAAATGTTACTGTTGAACAATGTCAATCTGCTCCACCTAGAGAGAAGAGATTCCGAAAGCCTACTCAGAGGTATATTGAAGAATCTTCAAATTTGAAGTCAAAAGAAAAAGTATCAACTACTGGTGTAAAACGTAAACGGCGGACTGTGTCATTAAGCAATGAGTTCCATACAAAAACTAAAGAATTGAAAGATATTCCAAGCGACGAGTCTAGTAGCGGTAATAGTGATGTGACGCTTTCTGAGTTGCAACACTGCAAGAAGCATCCAAAGAAAGAGGTACTATTTTCTTTTTGGGGTGTCTATCTGTATATTTCCTTTAGTAAATGAAGATTTTTTTTTCTTTTCTGAATAGCTTCCCTTTTGTATTGCCATTAAAAAAAAAAGCCCCCTTTGTAGTCAGATGGAGAGTATCTGTATAATTTTGAATGTTTTAGTTTTACTTTTTCTATGTTCTGGTTTCGGATACTTCTGTGTGACAACAATATTTGACGATTATGCAATCTATCTATTAATTTTATTTGTCAACTTGTATTACCTGTAAATCTAGTTGAATGACCCCTAATGAATTGATGTGTGAAGTATGTTTTAATTTTTATGTTTGCCATGAATTTGCTTCGTTATGCTTCCCTCCTCTCTTTGCCTGAACAGGGGCTTGGCTTCATTGTACATGTTTTTCTGTTGCAGTATCATTTATCATCTTCATCGTGGCAATACATTTTTTTTTAATAATTAAAGCATGATATTCAAGTATAAATTCTGCAATTCTGAAGGTCTACAACTGATTTTGTAATTGGACAAGTTGAAACAAAATGGTTACATGGTTGAGATACACATGTGTGTTTTATACATGATTAAGTTGTTCTTATGTTGTTAATTATAAATTTAGATATGATAACTGCATATCAATGCAAGGACCTAATATTCATGTCTGGTCTGCAAATCTAAATTATTCTCCGTTGTTTGATAAAACAAATTGTTGTTTTATAGAAGCTTGAGTATGACTACGAGCCTTTTTCCTCGGAAGAGTCCGAGGATGAACATTTGACACCAAAAAGAGGCAGATCAAAAGATCGAAGAAAGAATCAAAGGATGTGGACAGTCTCTGAAGTGACAAAGTTGATTGATGGCATATCTCAATATGGAGTTGGTCGATGGACTGATATACAGAAGTTTTTGTTTTCTTCTGAAGGCTACCGAACTCCCACAGATGTCAGGGTACTGTACTGAACTTCACACATTCATTTGTCACCTTTCTTCCAAATTTGTGTTTTCTAAATATGATTTATGCAGGACAAGTGGCGTAACCTTTTAAGAGCCTGTACTGCACAGAAATTCAGCAAGAACGAGGTTAACTTTCTATTTTCCTTTTCTGAAACTTTATTCTGTTAATCAAATCTTCACGAATCATAGGAACTTCAGTTGGAGTACTAATTACTTAATGTGACATGGTGTACTTCACTGAGCTATTTTCCGTAAATATGCCATTTCTCGTAAAATTTATTTTGAGGATAAGTTAATGTAAACAATCATTTGGTGATTGTAGGATGAGCAAAATGATGAGACTGCCCCGCGGATCTTACCTTTTAGTGTGGCTAGCCGAGTGCTGGAATTGGCTAAACTTCACCCATACCCAAAGCGACGAAACAAAAAGAGATTCACCAGTGAAAACTATGGTCCATCTAGTAGTCTTGGCAAAAGAAATTTACGTAGGAAGAAGTGTACTTAG
Protein sequence

>MS.gene029812.t1

MHVEGISWVEILEHGAYEDSPLENSNSESHSPGFSGSSTVGGISESTKAPNSTQSKSEIKSLDETVTHDTHGVFRNNPTQPSNVDCMYNISLDIQHLHELNNGYPLAGSILSCKKENVTVEQCQSAPPREKRFRKPTQRYIEESSNLKSKEKVSTTGVKRKRRTVSLSNEFHTKTKELKDIPSDESSSGNSDVTLSELQHCKKHPKKEKLEYDYEPFSSEESEDEHLTPKRGRSKDRRKNQRMWTVSEVTKLIDGISQYGVGRWTDIQKFLFSSEGYRTPTDVRDKWRNLLRACTAQKFSKNEDEQNDETAPRILPFSVASRVLELAKLHPYPKRRNKKRFTSENYGPSSSLGKRNLRRKKCT