AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029831

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029831.t1 MTR_1g064430 97.474 673 13 2 1 671 1 671 0.0 1360
MS.gene029831.t1 MTR_1g064430 97.474 673 13 2 1 671 14 684 0.0 1359
MS.gene029831.t1 MTR_2g094570 56.647 692 252 14 2 671 41 706 0.0 731
MS.gene029831.t1 MTR_2g094570 57.652 673 238 13 20 671 4 650 0.0 729
MS.gene029831.t1 MTR_2g094570 57.652 673 238 13 20 671 4 650 0.0 728
MS.gene029831.t1 MTR_4g058930 58.902 674 218 13 24 671 9 649 0.0 715
MS.gene029831.t1 MTR_4g058930 58.902 674 218 13 24 671 9 649 0.0 714
MS.gene029831.t1 MTR_7g101280 54.892 603 239 11 20 609 24 606 0.0 623
MS.gene029831.t1 MTR_0041s0110 54.892 603 239 11 20 609 24 606 0.0 623
MS.gene029831.t1 MTR_1g094960 50.000 644 241 12 1 602 1 605 0.0 568
MS.gene029831.t1 MTR_7g101275 50.000 408 145 5 36 432 1 360 9.04e-125 376
MS.gene029831.t1 MTR_0041s0120 50.000 408 157 7 36 432 1 372 6.43e-122 369
MS.gene029831.t1 MTR_3g073420 41.397 587 289 16 24 584 16 573 1.32e-117 364
MS.gene029831.t1 MTR_5g061220 42.765 463 212 14 22 470 14 437 1.87e-103 325
MS.gene029831.t1 MTR_2g024430 41.422 408 163 11 24 420 17 359 5.50e-89 287
MS.gene029831.t1 MTR_5g040880 38.821 407 185 7 21 422 5 352 8.43e-87 281
MS.gene029831.t1 MTR_5g082140 37.882 425 194 10 24 439 9 372 4.87e-80 262
MS.gene029831.t1 MTR_1g058210 36.190 420 203 10 22 433 7 369 1.27e-79 261
MS.gene029831.t1 MTR_4g021580 30.466 686 385 19 11 671 3 621 4.59e-79 265
MS.gene029831.t1 MTR_4g021580 30.073 685 389 18 11 671 3 621 5.58e-79 264
MS.gene029831.t1 MTR_2g093740 38.221 416 198 10 27 428 56 426 3.30e-77 261
MS.gene029831.t1 MTR_2g014770 36.446 439 214 11 23 450 51 435 3.35e-77 259
MS.gene029831.t1 MTR_4g060460 30.028 716 386 21 27 671 54 725 6.38e-77 262
MS.gene029831.t1 MTR_2g093740 38.221 416 198 10 27 428 56 426 1.61e-76 260
MS.gene029831.t1 MTR_2g014770 36.446 439 214 11 23 450 51 435 1.76e-76 258
MS.gene029831.t1 MTR_2g093740 38.221 416 198 10 27 428 56 426 3.00e-76 261
MS.gene029831.t1 MTR_8g100050 35.492 417 219 6 6 417 38 409 1.02e-75 257
MS.gene029831.t1 MTR_8g100050 35.492 417 219 6 6 417 38 409 4.95e-75 258
MS.gene029831.t1 MTR_1g024025 37.209 387 190 6 20 399 36 376 1.47e-74 261
MS.gene029831.t1 MTR_2g005240 31.587 668 358 19 27 671 23 614 4.70e-74 252
MS.gene029831.t1 MTR_2g093740 37.063 429 198 11 27 428 56 439 2.27e-73 251
MS.gene029831.t1 MTR_2g093740 37.063 429 198 11 27 428 56 439 8.66e-73 250
MS.gene029831.t1 MTR_2g093740 37.063 429 198 11 27 428 56 439 1.18e-72 251
MS.gene029831.t1 MTR_4g060460 36.867 415 204 8 27 425 54 426 7.25e-72 248
MS.gene029831.t1 MTR_4g088210 35.455 440 222 10 23 448 36 427 8.53e-72 246
MS.gene029831.t1 MTR_4g088210 32.635 573 293 18 23 577 36 533 9.91e-72 246
MS.gene029831.t1 MTR_5g040740 37.867 375 165 7 24 389 9 324 1.06e-71 238
MS.gene029831.t1 MTR_2g006270 34.414 401 194 11 26 417 12 352 2.12e-71 239
MS.gene029831.t1 MTR_2g018690 36.658 401 203 8 18 412 14 369 2.19e-71 249
MS.gene029831.t1 MTR_5g076270 35.038 391 204 7 21 405 18 364 3.16e-70 244
MS.gene029831.t1 MTR_8g079492 36.000 400 206 8 18 412 14 368 9.27e-70 244
MS.gene029831.t1 MTR_8g079492 36.000 400 206 8 18 412 14 368 9.83e-70 244
MS.gene029831.t1 MTR_4g124900 37.530 413 208 7 5 412 1 368 1.15e-69 246
MS.gene029831.t1 MTR_4g124900 37.530 413 208 7 5 412 1 368 1.16e-69 246
MS.gene029831.t1 MTR_8g101360 38.342 386 186 6 24 402 28 368 3.22e-68 242
MS.gene029831.t1 MTR_3g064050 34.271 391 207 8 21 405 20 366 1.79e-65 231
MS.gene029831.t1 MTR_2g006380 33.251 403 193 12 24 417 17 352 1.02e-64 221
MS.gene029831.t1 MTR_8g027440 37.221 403 192 10 27 420 29 379 2.31e-64 225
MS.gene029831.t1 MTR_7g062540 34.529 446 220 14 15 451 4 386 1.03e-63 224
MS.gene029831.t1 MTR_2g093740 40.461 304 134 5 127 428 38 296 4.05e-59 210
MS.gene029831.t1 MTR_2g093740 40.461 304 134 5 127 428 38 296 7.02e-59 210
MS.gene029831.t1 MTR_2g043250 47.059 221 110 2 15 230 11 229 5.86e-58 212
MS.gene029831.t1 MTR_2g043250 40.777 103 60 1 300 402 257 358 8.52e-17 85.5
MS.gene029831.t1 MTR_5g060780 35.749 414 194 15 24 425 9 362 6.82e-57 198
MS.gene029831.t1 MTR_5g061890 34.821 448 209 18 24 448 9 396 1.03e-56 197
MS.gene029831.t1 MTR_5g460920 35.507 414 195 15 24 425 9 362 6.75e-56 196
MS.gene029831.t1 MTR_2g093740 38.801 317 134 6 127 428 38 309 1.74e-55 200
MS.gene029831.t1 MTR_2g093740 38.801 317 134 6 127 428 38 309 2.57e-55 201
MS.gene029831.t1 MTR_8g079492 35.866 329 166 7 84 412 3 286 4.70e-52 193
MS.gene029831.t1 MTR_5g060630 29.679 529 247 18 22 480 7 480 9.47e-50 182
MS.gene029831.t1 MTR_5g460740 29.679 529 247 18 22 480 7 480 9.47e-50 182
MS.gene029831.t1 MTR_5g062970 41.667 192 106 4 27 215 38 226 9.39e-47 166
MS.gene029831.t1 MTR_8g446900 29.630 378 197 11 73 448 12 322 9.07e-44 162
MS.gene029831.t1 MTR_5g062960 35.955 178 88 6 293 467 1 155 5.81e-23 97.4
MS.gene029831.t1 MTR_3g064050 39.216 102 60 2 305 405 29 129 3.16e-15 79.7
MS.gene029831.t1 MTR_5g060770 32.895 152 87 5 72 221 6 144 7.14e-15 77.0
MS.gene029831.t1 MTR_5g060770 32.990 194 100 8 291 474 142 315 9.64e-15 76.6
MS.gene029831.t1 MTR_5g032260 38.095 105 63 2 293 396 49 152 1.81e-14 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029831.t1 AT4G30080 55.255 666 254 13 20 671 12 647 0.0 675
MS.gene029831.t1 AT2G28350 53.148 683 250 18 19 671 2 644 0.0 635
MS.gene029831.t1 AT2G28350 53.148 683 250 18 19 671 2 644 0.0 634
MS.gene029831.t1 AT1G77850 42.358 458 233 11 22 469 14 450 1.41e-113 354
MS.gene029831.t1 AT1G77850 42.358 458 233 11 22 469 14 450 1.69e-113 353
MS.gene029831.t1 AT1G59750 31.571 662 357 16 27 671 22 604 5.18e-78 262
MS.gene029831.t1 AT1G59750 31.763 658 366 14 27 671 22 609 1.39e-77 261
MS.gene029831.t1 AT1G59750 31.763 658 366 14 27 671 22 609 1.39e-77 261
MS.gene029831.t1 AT1G59750 31.476 664 357 17 27 671 22 606 7.46e-77 259
MS.gene029831.t1 AT1G19850 37.859 383 186 6 24 399 40 377 4.49e-76 261
MS.gene029831.t1 AT1G19850 37.859 383 186 6 24 399 51 388 7.37e-76 261
MS.gene029831.t1 AT2G33860 35.792 461 233 11 23 468 52 464 1.98e-75 254
MS.gene029831.t1 AT5G60450 37.838 407 189 11 27 417 41 399 9.72e-75 256
MS.gene029831.t1 AT5G60450 37.838 407 189 11 27 417 65 423 2.51e-74 255
MS.gene029831.t1 AT5G37020 36.041 394 200 6 19 405 14 362 3.61e-73 251
MS.gene029831.t1 AT5G37020 36.041 394 200 6 19 405 14 362 9.67e-73 251
MS.gene029831.t1 AT4G23980 30.075 665 358 18 27 671 12 589 3.23e-72 246
MS.gene029831.t1 AT5G62000 34.346 428 223 7 2 417 30 411 9.23e-72 249
MS.gene029831.t1 AT5G62000 34.346 428 223 7 2 417 30 411 9.83e-72 249
MS.gene029831.t1 AT5G62000 34.346 428 223 7 2 417 30 411 9.83e-72 249
MS.gene029831.t1 AT5G62000 34.346 428 223 7 2 417 30 411 9.83e-72 249
MS.gene029831.t1 AT5G62000 34.346 428 223 7 2 417 30 411 9.83e-72 249
MS.gene029831.t1 AT2G46530 29.812 691 327 22 2 671 3 556 1.06e-71 244
MS.gene029831.t1 AT2G46530 30.180 666 314 21 27 671 42 577 6.90e-71 242
MS.gene029831.t1 AT3G61830 35.147 441 224 12 9 442 7 392 9.49e-71 241
MS.gene029831.t1 AT4G23980 29.774 665 358 18 27 671 12 587 1.29e-70 241
MS.gene029831.t1 AT1G30330 35.910 401 206 9 18 412 14 369 6.13e-69 243
MS.gene029831.t1 AT1G30330 35.930 398 204 9 21 412 19 371 8.75e-69 242
MS.gene029831.t1 AT1G30330 35.930 398 204 9 21 412 19 371 8.75e-69 242
MS.gene029831.t1 AT5G20730 36.609 407 208 6 15 416 12 373 1.03e-66 238
MS.gene029831.t1 AT1G19220 36.855 407 207 6 15 416 11 372 1.20e-66 238
MS.gene029831.t1 AT5G20730 36.520 408 208 7 15 416 12 374 1.82e-65 234
MS.gene029831.t1 AT5G20730 36.520 408 208 7 15 416 12 374 2.02e-65 234
MS.gene029831.t1 AT1G35520 29.874 636 317 20 27 646 27 549 1.46e-60 213
MS.gene029831.t1 AT1G34410 28.463 657 352 19 27 671 27 577 1.45e-59 211
MS.gene029831.t1 AT1G34390 29.253 629 328 21 27 646 27 547 8.60e-58 206
MS.gene029831.t1 AT3G61830 35.925 373 183 10 71 442 24 341 1.47e-57 204
MS.gene029831.t1 AT1G34310 34.988 403 196 11 27 420 27 372 1.56e-57 205
MS.gene029831.t1 AT1G35240 34.048 420 210 11 27 437 27 388 2.22e-57 204
MS.gene029831.t1 AT1G35540 34.336 399 199 10 27 417 27 370 5.26e-57 204
MS.gene029831.t1 AT2G33860 36.467 351 169 8 127 468 2 307 4.25e-56 197
MS.gene029831.t1 AT1G34170 32.587 402 204 11 27 418 25 369 1.27e-53 192
MS.gene029831.t1 AT2G46530 29.570 558 257 18 126 671 36 469 1.35e-51 187
MS.gene029831.t1 AT5G37020 36.429 280 134 4 127 405 31 267 1.57e-48 182
MS.gene029831.t1 AT1G34170 31.095 402 184 11 27 418 25 343 4.84e-47 173
MS.gene029831.t1 AT1G34170 31.095 402 184 11 27 418 25 343 1.99e-46 173
MS.gene029831.t1 AT1G43950 41.346 208 102 7 27 226 27 222 3.26e-38 141
MS.gene029831.t1 AT2G46870 34.862 109 64 2 116 224 24 125 2.84e-11 65.5
MS.gene029831.t1 AT3G25730 36.458 96 59 1 127 220 183 278 6.27e-11 64.7
MS.gene029831.t1 AT3G61970 27.670 206 120 7 119 303 4 201 7.13e-11 64.3

Find 181 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAAGATGAATATATTTA+TGG 0.118268 1.2:+49279179 None:intergenic
GTCTCGAATAAGTTGGTTTA+TGG 0.152750 1.2:+49280229 MS.gene029831:CDS
AGATGGAAATACCAATAAAA+TGG 0.189014 1.2:+49281171 MS.gene029831:CDS
GCATAAACCTCATCTGTTTC+AGG 0.203134 1.2:-49279441 None:intergenic
CCCTCCTCTTCAGAACATTT+TGG 0.208126 1.2:+49279668 MS.gene029831:CDS
TGAGAAAGGTGAAAGGTTTA+TGG 0.219953 1.2:-49280711 None:intergenic
CGAAGAAACGGAAGCAAGTT+TGG 0.233645 1.2:+49281288 MS.gene029831:CDS
TAAGCTTAAGCTTGTTCCTT+TGG 0.291537 1.2:+49279464 MS.gene029831:CDS
TGGTTTATGGGAATTGTATC+TGG 0.292586 1.2:+49280242 MS.gene029831:CDS
GAAACGATGGCACTGAAATT+TGG 0.305036 1.2:-49280787 None:intergenic
GGACAATTCATGAAGTTAAC+AGG 0.315804 1.2:-49279363 None:intergenic
TCGTTTCCTAGTAACCTTCT+AGG 0.317283 1.2:+49280803 MS.gene029831:CDS
AGTTCAGGCAGGTCTATTTC+CGG 0.319570 1.2:+49280931 MS.gene029831:CDS
TTCACCTTGGAGGCTTCTTC+AGG 0.328238 1.2:+49280298 MS.gene029831:CDS
AAGCTTAAGCTTGTTCCTTT+GGG 0.328422 1.2:+49279465 MS.gene029831:CDS
AGAAGCCTCCAAGGTGAATT+AGG 0.335922 1.2:-49280293 None:intergenic
CTTGTTCCTTTGGGTGGAAA+TGG 0.343258 1.2:+49279474 MS.gene029831:CDS
ATGCAGATTCGATGGTGTTC+TGG 0.343933 1.2:+49280170 MS.gene029831:CDS
ACAATTGACCTTTCTTTACT+TGG 0.344982 1.2:+49281361 MS.gene029831:CDS
GACAATCTCAATTTCTTCCT+TGG 0.347743 1.2:-49280737 None:intergenic
ACCGCTTGAAGGACCGCTTC+TGG 0.350997 1.2:-49280050 None:intergenic
TCTCGAATAAGTTGGTTTAT+GGG 0.357035 1.2:+49280230 MS.gene029831:CDS
AATGTCTTTGCAAATGAAAC+AGG 0.359372 1.2:-49279555 None:intergenic
ATGGCGAGACGTGGAAGTTT+AGG 0.367612 1.2:+49279703 MS.gene029831:CDS
CATGCCAGCAGGAGTACTTT+CGG 0.368965 1.2:-49280852 None:intergenic
TCATTATGGTCTTCCGATAT+CGG 0.371359 1.2:+49280892 MS.gene029831:CDS
CATGAGGATCCATTACCATT+AGG 0.376847 1.2:+49279891 MS.gene029831:CDS
CTCTCACTAGAGGAGCGTTT+TGG 0.379568 1.2:-49281241 None:intergenic
CTGGCTCCCTGCATGCCAGC+AGG 0.380532 1.2:-49280863 None:intergenic
TTCTTCCTTGGTTGTGAGAA+AGG 0.380986 1.2:-49280725 None:intergenic
CGCGGTTATCCTTATACCAT+TGG 0.383301 1.2:-49281267 None:intergenic
TGAGAGTTTCCAATGGTATA+AGG 0.391430 1.2:+49281258 MS.gene029831:CDS
CCGCTAAAGTTACCGCTTGA+AGG 0.392870 1.2:-49280061 None:intergenic
CTGCTGGCATGCAGGGAGCC+AGG 0.396598 1.2:+49280864 MS.gene029831:CDS
AACTTGCTTCCGTTTCTTCG+CGG 0.399377 1.2:-49281285 None:intergenic
AGTTTGTTGATCCCCTTCTC+TGG 0.400220 1.2:+49280270 MS.gene029831:CDS
AACTCAGGCGCGAATATGAC+TGG 0.403386 1.2:+49280011 MS.gene029831:CDS
AATCACAAGAAGCTTCTTGC+CGG 0.403468 1.2:+49279786 MS.gene029831:CDS
GGAGCCAGGCATGCTCATTA+TGG 0.423939 1.2:+49280878 MS.gene029831:CDS
TTTCGGGTAGACAACGGAAT+AGG 0.433921 1.2:-49280835 None:intergenic
TGGTATTTCCATCTGATGAA+TGG 0.434165 1.2:-49281162 None:intergenic
GGCTAATAAGCAACCGTTTG+AGG 0.435944 1.2:+49280082 MS.gene029831:CDS
CCAACAGGATTCCACCCTAA+TGG 0.436228 1.2:-49279906 None:intergenic
AGAAAGCTGGCAGACATGTT+TGG 0.443426 1.2:+49281403 MS.gene029831:CDS
GTGCTCTACCGTGATATATC+TGG 0.445579 1.2:+49281454 MS.gene029831:CDS
GGAATCAAAGGTGAAACCTT+TGG 0.447087 1.2:-49279384 None:intergenic
TACACAGAATGAGAATCAAA+TGG 0.448127 1.2:+49279953 MS.gene029831:CDS
ATGAGGATCCATTACCATTA+GGG 0.450034 1.2:+49279892 MS.gene029831:CDS
TCTGGCCTAATTCACCTTGG+AGG 0.451766 1.2:+49280288 MS.gene029831:CDS
TCTCCACCTCAGTAAAGTTC+AGG 0.453129 1.2:+49280916 MS.gene029831:CDS
ACACAGAATGAGAATCAAAT+GGG 0.454771 1.2:+49279954 MS.gene029831:CDS
TAAGGATAACCGCGAAGAAA+CGG 0.457301 1.2:+49281276 MS.gene029831:CDS
ATGATCAAAAGGCACGAAAC+CGG 0.458029 1.2:-49280954 None:intergenic
GTCATTAGAGATTTGTTGCT+CGG 0.460103 1.2:-49281140 None:intergenic
GTTTGTGATTCTTACCTGAA+TGG 0.461365 1.2:-49281502 None:intergenic
GATGGAAATACCAATAAAAT+GGG 0.463679 1.2:+49281172 MS.gene029831:CDS
CTGAGGTGGAGATCCGATAT+CGG 0.464440 1.2:-49280905 None:intergenic
ATGCCAGCAGGAGTACTTTC+GGG 0.465859 1.2:-49280851 None:intergenic
TGGGATTCGACGAGCGAAGA+AGG 0.469310 1.2:+49279854 MS.gene029831:CDS
CACTGAAATTTGGCCGTCGA+GGG 0.472008 1.2:-49280777 None:intergenic
ATAGGTTGCTCTGACCTAGA+AGG 0.479580 1.2:-49280817 None:intergenic
TGCATTGCCGCCTCTACTAA+AGG 0.482510 1.2:-49280152 None:intergenic
CAACTATGGCATGCTTGTGC+AGG 0.483052 1.2:+49279264 MS.gene029831:CDS
GGATTCCACCCTAATGGTAA+TGG 0.485472 1.2:-49279900 None:intergenic
ATCACAAGAAGCTTCTTGCC+GGG 0.486243 1.2:+49279787 MS.gene029831:CDS
AAGTACTCCTGCTGGCATGC+AGG 0.486614 1.2:+49280856 MS.gene029831:CDS
AAAATGGTGATCTTTGTGTT+GGG 0.488407 1.2:+49279835 MS.gene029831:CDS
TTAATAGATAAAACTTTGCA+TGG 0.488914 1.2:-49279405 None:intergenic
AGACGAATCCTCGGTTTCAA+AGG 0.490672 1.2:-49280210 None:intergenic
CGACGAGCGAAGAAGGGTAT+TGG 0.491306 1.2:+49279861 MS.gene029831:CDS
TTCTCTGGCCTAATTCACCT+TGG 0.492130 1.2:+49280285 MS.gene029831:CDS
CCTTTGGGTGGAAATGGTAA+TGG 0.496376 1.2:+49279480 MS.gene029831:CDS
AAAACTTTGCATGGAATCAA+AGG 0.504526 1.2:-49279396 None:intergenic
CTTAAGCTTGTTCCTTTGGG+TGG 0.509650 1.2:+49279468 MS.gene029831:CDS
ATTTACTGCAAAATGTAAGA+AGG 0.509927 1.2:+49280648 MS.gene029831:CDS
AGTTTAGCAGCATGATCAAA+AGG 0.510146 1.2:-49280965 None:intergenic
CTCTGACCTAGAAGGTTACT+AGG 0.513995 1.2:-49280809 None:intergenic
AAGTTTAGGCATATTTATAG+AGG 0.517507 1.2:+49279717 MS.gene029831:CDS
TGTCTCTTGCTTACTATCCA+TGG 0.518182 1.2:+49281039 MS.gene029831:CDS
CCATTAGGGTGGAATCCTGT+TGG 0.519653 1.2:+49279906 MS.gene029831:CDS
GGAAGCAAGTTTGGAGAGTA+CGG 0.521728 1.2:+49281297 MS.gene029831:CDS
TGACTGGGAGGGAAAAGGTT+AGG 0.521859 1.2:+49280027 MS.gene029831:CDS
TAAACTTTACTGTTCACTGT+TGG 0.522539 1.2:-49279303 None:intergenic
TGATGAACTGTACAGAAAGC+TGG 0.523736 1.2:+49281390 MS.gene029831:CDS
GGTGTTTAGATCCTCAACTA+TGG 0.524660 1.2:+49279250 MS.gene029831:CDS
GGGTAGTAAATAACCTCAAA+CGG 0.525195 1.2:-49280095 None:intergenic
CATAAGATCCAAGTAAAGAA+AGG 0.525657 1.2:-49281369 None:intergenic
ACGAGGAGTTCCCGAACCAT+CGG 0.527122 1.2:-49281203 None:intergenic
GCCAAAATGTTCTGAAGAGG+AGG 0.527805 1.2:-49279669 None:intergenic
TTCTGTGTAAACCAAGGAAG+AGG 0.532226 1.2:-49279939 None:intergenic
GAATATGACTGGGAGGGAAA+AGG 0.532595 1.2:+49280022 MS.gene029831:CDS
ATGTAAGAAGGGTGAGTCCA+TGG 0.533350 1.2:+49280660 MS.gene029831:CDS
AGGATTCGTCTCGAATAAGT+TGG 0.533362 1.2:+49280222 MS.gene029831:CDS
GAAAATGGTGATCTTTGTGT+TGG 0.533797 1.2:+49279834 MS.gene029831:CDS
ACATTGGAGAGGAACCATTC+AGG 0.535436 1.2:+49281488 MS.gene029831:CDS
TCTAATGACCATTCATCAGA+TGG 0.537635 1.2:+49281154 MS.gene029831:CDS
AGTACTCCTGCTGGCATGCA+GGG 0.540145 1.2:+49280857 MS.gene029831:CDS
AAGACCATAATGAGCATGCC+TGG 0.540953 1.2:-49280882 None:intergenic
GCATGCTTGTGCAGGTGGAA+TGG 0.542227 1.2:+49279272 MS.gene029831:CDS
CCTTCAAGCGGTAACTTTAG+CGG 0.549169 1.2:+49280061 MS.gene029831:CDS
GCGAAGAAGGGTATTGGTGG+TGG 0.550842 1.2:+49279867 MS.gene029831:CDS
GGGATTCGACGAGCGAAGAA+GGG 0.551807 1.2:+49279855 MS.gene029831:CDS
AAAGTTTATTACTTTCCTCA+AGG 0.553230 1.2:+49279318 MS.gene029831:CDS
CTATGGCATGCTTGTGCAGG+TGG 0.553241 1.2:+49279267 MS.gene029831:CDS
CTACCCGAAAGTACTCCTGC+TGG 0.554091 1.2:+49280848 MS.gene029831:CDS
TGTGAAGGCGCCTTTAGTAG+AGG 0.555008 1.2:+49280142 MS.gene029831:CDS
AAGGTGAATTAGGCCAGAGA+AGG 0.557096 1.2:-49280283 None:intergenic
TAACTTCATGAATTGTCCAA+AGG 0.561840 1.2:+49279368 MS.gene029831:CDS
AATAACAATGGTTTGAACTC+AGG 0.561882 1.2:+49279996 MS.gene029831:CDS
AACTCTGGCGTACTTGCGCG+AGG 0.565767 1.2:-49280116 None:intergenic
TTTACTGCAAAATGTAAGAA+GGG 0.567494 1.2:+49280649 MS.gene029831:CDS
TTAGCCAAAATGTTCTGAAG+AGG 0.569408 1.2:-49279672 None:intergenic
GCACTGAAATTTGGCCGTCG+AGG 0.570322 1.2:-49280778 None:intergenic
CCATTACCATTTCCACCCAA+AGG 0.573446 1.2:-49279480 None:intergenic
CAAGATGGCCTTTGAAACCG+AGG 0.577088 1.2:+49280202 MS.gene029831:CDS
CGAGCGAAGAAGGGTATTGG+TGG 0.577713 1.2:+49279864 MS.gene029831:CDS
GCTACTAATTCAACCAACCA+TGG 0.579195 1.2:-49280677 None:intergenic
ATTCATCAGAAGAAGTTGAA+AGG 0.580416 1.2:+49279229 MS.gene029831:CDS
AGGTGAATTAGGCCAGAGAA+GGG 0.583510 1.2:-49280282 None:intergenic
ATTAACAACAACAATAACAA+TGG 0.588569 1.2:+49279984 MS.gene029831:CDS
CACCTCAGTAAAGTTCAGGC+AGG 0.589149 1.2:+49280920 MS.gene029831:CDS
CTGCCTGAACTTTACTGAGG+TGG 0.589800 1.2:-49280919 None:intergenic
AAAGGTGAAAGGTTTATGGA+TGG 0.590026 1.2:-49280707 None:intergenic
CTGAAATTTGGCCGTCGAGG+GGG 0.590791 1.2:-49280775 None:intergenic
TCAAAAGGCACGAAACCGGC+CGG 0.591651 1.2:-49280950 None:intergenic
GGCGCCTTCACACAAAACTC+TGG 0.592521 1.2:-49280131 None:intergenic
CAGGCAGGTCTATTTCCGGC+CGG 0.592530 1.2:+49280935 MS.gene029831:CDS
GTAGTCAAAAGATGCCGCCT+CGG 0.596640 1.2:-49279744 None:intergenic
AAGATGTTCATGGCGAGACG+TGG 0.596686 1.2:+49279694 MS.gene029831:CDS
AGGCGGCAATGCAGATTCGA+TGG 0.597819 1.2:+49280162 MS.gene029831:CDS
TCTGATGCTAACAATGGTGG+AGG 0.600675 1.2:+49279585 MS.gene029831:CDS
GTTACCTGAAGAAGCCTCCA+AGG 0.601497 1.2:-49280302 None:intergenic
GCTGCAGATTATGACACTGT+TGG 0.602356 1.2:+49279510 MS.gene029831:CDS
TTCTGGAATAAGATTCAAGA+TGG 0.603114 1.2:+49280187 MS.gene029831:CDS
GGGTATTGGTGGTGGACATG+AGG 0.604425 1.2:+49279875 MS.gene029831:CDS
TTCTCATTCTGTGTAAACCA+AGG 0.607875 1.2:-49279945 None:intergenic
GCAGATTATGACACTGTTGG+AGG 0.608851 1.2:+49279513 MS.gene029831:CDS
TGGCCGAAAAGAACAAGCTG+AGG 0.609518 1.2:-49281106 None:intergenic
TTGGTTGTGAGAAAGGTGAA+AGG 0.610407 1.2:-49280718 None:intergenic
CAATCTGATGCTAACAATGG+TGG 0.611120 1.2:+49279582 MS.gene029831:CDS
GCATGTTCAGCATGACCTTG+AGG 0.617891 1.2:-49279333 None:intergenic
TCACAAGAAGCTTCTTGCCG+GGG 0.620934 1.2:+49279788 MS.gene029831:CDS
TCTGGAGCAGTCAAACACAT+TGG 0.623032 1.2:+49281472 MS.gene029831:CDS
ACTTATTCGAGACGAATCCT+CGG 0.623357 1.2:-49280219 None:intergenic
AATGTTCTGAAGAGGAGGGT+CGG 0.624657 1.2:-49279664 None:intergenic
AGACTGAGTAGAACTTGCCA+TGG 0.625027 1.2:-49281056 None:intergenic
GCACAAGCATGCCATAGTTG+AGG 0.626456 1.2:-49279261 None:intergenic
GGTAAGACTTGTTGATGACG+AGG 0.626525 1.2:-49281220 None:intergenic
ACTGAAATTTGGCCGTCGAG+GGG 0.629416 1.2:-49280776 None:intergenic
TTTCCCTCGTTTGGATTACG+CGG 0.631927 1.2:+49279641 MS.gene029831:CDS
AGGATCCATTACCATTAGGG+TGG 0.632365 1.2:+49279895 MS.gene029831:CDS
GCCAGAAGCGGTCCTTCAAG+CGG 0.635688 1.2:+49280049 MS.gene029831:CDS
TTTCTCGAATCAGAAGATGT+CGG 0.638567 1.2:+49281334 MS.gene029831:CDS
GGCTGATCCTGAAACAGATG+AGG 0.642209 1.2:+49279434 MS.gene029831:CDS
TCGAATCAGAAGATGTCGGT+CGG 0.645828 1.2:+49281338 MS.gene029831:CDS
ACTCAGGCGCGAATATGACT+GGG 0.647010 1.2:+49280012 MS.gene029831:CDS
AGGCGCGAATATGACTGGGA+GGG 0.648683 1.2:+49280016 MS.gene029831:CDS
TTTCACCTTTCTCACAACCA+AGG 0.649147 1.2:+49280720 MS.gene029831:CDS
GGAAAAGGTTAGGCCAGAAG+CGG 0.650274 1.2:+49280037 MS.gene029831:CDS
TGACTGCTCCAGATATATCA+CGG 0.657225 1.2:-49281462 None:intergenic
CCAAAATGTTCTGAAGAGGA+GGG 0.662547 1.2:-49279668 None:intergenic
ATCGTCTCAGCACAATACCT+AGG 0.664599 1.2:-49279618 None:intergenic
CCATTGGAAACTCTCACTAG+AGG 0.665637 1.2:-49281251 None:intergenic
CCTCTAGTGAGAGTTTCCAA+TGG 0.667381 1.2:+49281251 MS.gene029831:CDS
ACTCAATCTGATGCTAACAA+TGG 0.675509 1.2:+49279579 MS.gene029831:CDS
ACTCTGGCGTACTTGCGCGA+GGG 0.681238 1.2:-49280115 None:intergenic
AAGAAGGGTGAGTCCATGGT+TGG 0.682554 1.2:+49280664 MS.gene029831:CDS
CAGGCGCGAATATGACTGGG+AGG 0.684044 1.2:+49280015 MS.gene029831:CDS
GAGTACTTTCGGGTAGACAA+CGG 0.687017 1.2:-49280841 None:intergenic
ATTAGGTTATTAGAGACACT+AGG 0.687638 1.2:-49280989 None:intergenic
GGTGAATTAGGCCAGAGAAG+GGG 0.693414 1.2:-49280281 None:intergenic
AGCAGTCAAACACATTGGAG+AGG 0.695616 1.2:+49281477 MS.gene029831:CDS
CGGCCGCGTAATCCAAACGA+GGG 0.702235 1.2:-49279644 None:intergenic
AGAAGGTTACTAGGAAACGA+TGG 0.704217 1.2:-49280800 None:intergenic
GAAGGCGCCTTTAGTAGAGG+CGG 0.708805 1.2:+49280145 MS.gene029831:CDS
CACAGAATGAGAATCAAATG+GGG 0.710437 1.2:+49279955 MS.gene029831:CDS
GGTCATGCTGAACATGCATG+TGG 0.714823 1.2:+49279339 MS.gene029831:CDS
TTTATAGAGGAACACCGAGG+CGG 0.715637 1.2:+49279730 MS.gene029831:CDS
GACCTGCCTGAACTTTACTG+AGG 0.725533 1.2:-49280922 None:intergenic
TCGGCCGCGTAATCCAAACG+AGG 0.730598 1.2:-49279645 None:intergenic
ATATTTATAGAGGAACACCG+AGG 0.862150 1.2:+49279727 MS.gene029831:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATCAAATTTAATAAAATA+TGG - chr1.2:49280329-49280348 None:intergenic 10.0%
!! AATTGCATAATACTTAAATA+TGG + chr1.2:49280366-49280385 MS.gene029831:intron 15.0%
!!! AGTTTTATCTATTAAGTATA+TGG + chr1.2:49279413-49279432 MS.gene029831:CDS 15.0%
!! ATTAACAACAACAATAACAA+TGG + chr1.2:49279984-49280003 MS.gene029831:CDS 20.0%
!! TCATTAATTTAGTAATCAAG+TGG - chr1.2:49280464-49280483 None:intergenic 20.0%
!! TTAATAGATAAAACTTTGCA+TGG - chr1.2:49279408-49279427 None:intergenic 20.0%
!! TTTGTATGATTTCATTTGAT+AGG + chr1.2:49280547-49280566 MS.gene029831:intron 20.0%
!!! ATGATATTTTGTAGGTTAAA+TGG + chr1.2:49280615-49280634 MS.gene029831:intron 20.0%
!!! GTAGTATTATGATATTTTGT+AGG + chr1.2:49280607-49280626 MS.gene029831:intron 20.0%
!!! TGATATTTTGTAGGTTAAAT+GGG + chr1.2:49280616-49280635 MS.gene029831:intron 20.0%
! AAAGTTTATTACTTTCCTCA+AGG + chr1.2:49279318-49279337 MS.gene029831:CDS 25.0%
! AAGTTTAGGCATATTTATAG+AGG + chr1.2:49279717-49279736 MS.gene029831:CDS 25.0%
! AGATGGAAATACCAATAAAA+TGG + chr1.2:49281171-49281190 MS.gene029831:CDS 25.0%
! ATTTACTGCAAAATGTAAGA+AGG + chr1.2:49280648-49280667 MS.gene029831:CDS 25.0%
! ATTTCATTTGATAGGATCAT+AGG + chr1.2:49280555-49280574 MS.gene029831:intron 25.0%
! GATGGAAATACCAATAAAAT+GGG + chr1.2:49281172-49281191 MS.gene029831:CDS 25.0%
! TTTACTGCAAAATGTAAGAA+GGG + chr1.2:49280649-49280668 MS.gene029831:CDS 25.0%
!! GGAAAAATTACCCATTTTAT+TGG - chr1.2:49281185-49281204 None:intergenic 25.0%
AAAACTTTGCATGGAATCAA+AGG - chr1.2:49279399-49279418 None:intergenic 30.0%
AAAATGGTGATCTTTGTGTT+GGG + chr1.2:49279835-49279854 MS.gene029831:CDS 30.0%
AATAACAATGGTTTGAACTC+AGG + chr1.2:49279996-49280015 MS.gene029831:CDS 30.0%
AATGTCTTTGCAAATGAAAC+AGG - chr1.2:49279558-49279577 None:intergenic 30.0%
ACAATTGACCTTTCTTTACT+TGG + chr1.2:49281361-49281380 MS.gene029831:CDS 30.0%
ACACAGAATGAGAATCAAAT+GGG + chr1.2:49279954-49279973 MS.gene029831:CDS 30.0%
ATTAGGTTATTAGAGACACT+AGG - chr1.2:49280992-49281011 None:intergenic 30.0%
ATTCATCAGAAGAAGTTGAA+AGG + chr1.2:49279229-49279248 MS.gene029831:CDS 30.0%
CATAAGATCCAAGTAAAGAA+AGG - chr1.2:49281372-49281391 None:intergenic 30.0%
GAAATCATACAAAACTCAAC+AGG - chr1.2:49280540-49280559 None:intergenic 30.0%
TAAACTTTACTGTTCACTGT+TGG - chr1.2:49279306-49279325 None:intergenic 30.0%
TAACTTCATGAATTGTCCAA+AGG + chr1.2:49279368-49279387 MS.gene029831:CDS 30.0%
TACACAGAATGAGAATCAAA+TGG + chr1.2:49279953-49279972 MS.gene029831:CDS 30.0%
TGGCATAGAAAAATATGAGA+AGG + chr1.2:49281423-49281442 MS.gene029831:CDS 30.0%
! AAAATGGGTAATTTTTCCGA+TGG + chr1.2:49281187-49281206 MS.gene029831:CDS 30.0%
! AACAGAAGCACATTCTTAAA+TGG - chr1.2:49280508-49280527 None:intergenic 30.0%
! CTTACATTTTGCAGTAAATC+TGG - chr1.2:49280647-49280666 None:intergenic 30.0%
! TGCTAGATTTTTGCATCATT+AGG - chr1.2:49281009-49281028 None:intergenic 30.0%
!! TCTCGAATAAGTTGGTTTAT+GGG + chr1.2:49280230-49280249 MS.gene029831:CDS 30.0%
!! TTCTGGAATAAGATTCAAGA+TGG + chr1.2:49280187-49280206 MS.gene029831:CDS 30.0%
!!! ATTTTGGCTAAAGATGTTCA+TGG + chr1.2:49279684-49279703 MS.gene029831:CDS 30.0%
AAAGGTGAAAGGTTTATGGA+TGG - chr1.2:49280710-49280729 None:intergenic 35.0%
ACTCAATCTGATGCTAACAA+TGG + chr1.2:49279579-49279598 MS.gene029831:CDS 35.0%
AGTTTAGCAGCATGATCAAA+AGG - chr1.2:49280968-49280987 None:intergenic 35.0%
ATATTTATAGAGGAACACCG+AGG + chr1.2:49279727-49279746 MS.gene029831:CDS 35.0%
ATGAGGATCCATTACCATTA+GGG + chr1.2:49279892-49279911 MS.gene029831:CDS 35.0%
CACAGAATGAGAATCAAATG+GGG + chr1.2:49279955-49279974 MS.gene029831:CDS 35.0%
GAAAATGGTGATCTTTGTGT+TGG + chr1.2:49279834-49279853 MS.gene029831:CDS 35.0%
GACAATCTCAATTTCTTCCT+TGG - chr1.2:49280740-49280759 None:intergenic 35.0%
GGACAATTCATGAAGTTAAC+AGG - chr1.2:49279366-49279385 None:intergenic 35.0%
GGGTAGTAAATAACCTCAAA+CGG - chr1.2:49280098-49280117 None:intergenic 35.0%
TCATTATGGTCTTCCGATAT+CGG + chr1.2:49280892-49280911 MS.gene029831:CDS 35.0%
TCTAATGACCATTCATCAGA+TGG + chr1.2:49281154-49281173 MS.gene029831:CDS 35.0%
TGAGAAAGGTGAAAGGTTTA+TGG - chr1.2:49280714-49280733 None:intergenic 35.0%
TGAGAGTTTCCAATGGTATA+AGG + chr1.2:49281258-49281277 MS.gene029831:CDS 35.0%
TGGTATTTCCATCTGATGAA+TGG - chr1.2:49281165-49281184 None:intergenic 35.0%
TGGTTTATGGGAATTGTATC+TGG + chr1.2:49280242-49280261 MS.gene029831:CDS 35.0%
TTCTCATTCTGTGTAAACCA+AGG - chr1.2:49279948-49279967 None:intergenic 35.0%
TTTCTCGAATCAGAAGATGT+CGG + chr1.2:49281334-49281353 MS.gene029831:CDS 35.0%
! AAGCTTAAGCTTGTTCCTTT+GGG + chr1.2:49279465-49279484 MS.gene029831:CDS 35.0%
! AGAGGAAAATTTTCTCCAAC+AGG - chr1.2:49279924-49279943 None:intergenic 35.0%
! GAGAAAATTTTCCTCTTCCT+TGG + chr1.2:49279928-49279947 MS.gene029831:CDS 35.0%
! TAAGCTTAAGCTTGTTCCTT+TGG + chr1.2:49279464-49279483 MS.gene029831:CDS 35.0%
!! AAACCTCAGCTTGTTCTTTT+CGG + chr1.2:49281103-49281122 MS.gene029831:CDS 35.0%
!! GTCATTAGAGATTTGTTGCT+CGG - chr1.2:49281143-49281162 None:intergenic 35.0%
!! GTCTCGAATAAGTTGGTTTA+TGG + chr1.2:49280229-49280248 MS.gene029831:CDS 35.0%
!! TTAGCCAAAATGTTCTGAAG+AGG - chr1.2:49279675-49279694 None:intergenic 35.0%
!! TTCGATTGTGTTTTTGAGAG+CGG + chr1.2:49279812-49279831 MS.gene029831:CDS 35.0%
AATCACAAGAAGCTTCTTGC+CGG + chr1.2:49279786-49279805 MS.gene029831:CDS 40.0%
ACTTATTCGAGACGAATCCT+CGG - chr1.2:49280222-49280241 None:intergenic 40.0%
AGAAGGTTACTAGGAAACGA+TGG - chr1.2:49280803-49280822 None:intergenic 40.0%
AGGATTCGTCTCGAATAAGT+TGG + chr1.2:49280222-49280241 MS.gene029831:CDS 40.0%
CAAAAACACAATCGAATCCC+CGG - chr1.2:49279808-49279827 None:intergenic 40.0%
CAATCTGATGCTAACAATGG+TGG + chr1.2:49279582-49279601 MS.gene029831:CDS 40.0%
CATGAGGATCCATTACCATT+AGG + chr1.2:49279891-49279910 MS.gene029831:CDS 40.0%
GCATAAACCTCATCTGTTTC+AGG - chr1.2:49279444-49279463 None:intergenic 40.0%
GCTACTAATTCAACCAACCA+TGG - chr1.2:49280680-49280699 None:intergenic 40.0%
GGAATCAAAGGTGAAACCTT+TGG - chr1.2:49279387-49279406 None:intergenic 40.0%
GGTGTTTAGATCCTCAACTA+TGG + chr1.2:49279250-49279269 MS.gene029831:CDS 40.0%
TAAGGATAACCGCGAAGAAA+CGG + chr1.2:49281276-49281295 MS.gene029831:CDS 40.0%
TCGTTTCCTAGTAACCTTCT+AGG + chr1.2:49280803-49280822 MS.gene029831:CDS 40.0%
TGACTGCTCCAGATATATCA+CGG - chr1.2:49281465-49281484 None:intergenic 40.0%
TGATGAACTGTACAGAAAGC+TGG + chr1.2:49281390-49281409 MS.gene029831:CDS 40.0%
TGTCTCTTGCTTACTATCCA+TGG + chr1.2:49281039-49281058 MS.gene029831:CDS 40.0%
TTCTGTGTAAACCAAGGAAG+AGG - chr1.2:49279942-49279961 None:intergenic 40.0%
TTCTTCCTTGGTTGTGAGAA+AGG - chr1.2:49280728-49280747 None:intergenic 40.0%
TTGGTTGTGAGAAAGGTGAA+AGG - chr1.2:49280721-49280740 None:intergenic 40.0%
TTTCACCTTTCTCACAACCA+AGG + chr1.2:49280720-49280739 MS.gene029831:CDS 40.0%
! ATGATCAAAAGGCACGAAAC+CGG - chr1.2:49280957-49280976 None:intergenic 40.0%
! GAAACGATGGCACTGAAATT+TGG - chr1.2:49280790-49280809 None:intergenic 40.0%
! GGGTAATTTTTCCGATGGTT+CGG + chr1.2:49281192-49281211 MS.gene029831:CDS 40.0%
! GGTAATTTTTCCGATGGTTC+GGG + chr1.2:49281193-49281212 MS.gene029831:CDS 40.0%
!! CCAAAATGTTCTGAAGAGGA+GGG - chr1.2:49279671-49279690 None:intergenic 40.0%
!! GTGTTTTTGAGAGCGGAAAA+TGG + chr1.2:49279819-49279838 MS.gene029831:CDS 40.0%
!!! GTTGCTCGGTGAGAATTTTT+TGG - chr1.2:49281129-49281148 None:intergenic 40.0%
AAGACCATAATGAGCATGCC+TGG - chr1.2:49280885-49280904 None:intergenic 45.0%
AAGGTGAATTAGGCCAGAGA+AGG - chr1.2:49280286-49280305 None:intergenic 45.0%
AGAAAGCTGGCAGACATGTT+TGG + chr1.2:49281403-49281422 MS.gene029831:CDS 45.0%
AGAAGCCTCCAAGGTGAATT+AGG - chr1.2:49280296-49280315 None:intergenic 45.0%
AGACGAATCCTCGGTTTCAA+AGG - chr1.2:49280213-49280232 None:intergenic 45.0%
AGACTGAGTAGAACTTGCCA+TGG - chr1.2:49281059-49281078 None:intergenic 45.0%
AGCAGTCAAACACATTGGAG+AGG + chr1.2:49281477-49281496 MS.gene029831:CDS 45.0%
AGGATCCATTACCATTAGGG+TGG + chr1.2:49279895-49279914 MS.gene029831:CDS 45.0%
AGGTGAATTAGGCCAGAGAA+GGG - chr1.2:49280285-49280304 None:intergenic 45.0%
AGTTCAGGCAGGTCTATTTC+CGG + chr1.2:49280931-49280950 MS.gene029831:CDS 45.0%
ATAGGTTGCTCTGACCTAGA+AGG - chr1.2:49280820-49280839 None:intergenic 45.0%
ATCACAAGAAGCTTCTTGCC+GGG + chr1.2:49279787-49279806 MS.gene029831:CDS 45.0%
ATCGTCTCAGCACAATACCT+AGG - chr1.2:49279621-49279640 None:intergenic 45.0%
ATGCAGATTCGATGGTGTTC+TGG + chr1.2:49280170-49280189 MS.gene029831:CDS 45.0%
ATGTAAGAAGGGTGAGTCCA+TGG + chr1.2:49280660-49280679 MS.gene029831:CDS 45.0%
CCATTACCATTTCCACCCAA+AGG - chr1.2:49279483-49279502 None:intergenic 45.0%
CCATTGGAAACTCTCACTAG+AGG - chr1.2:49281254-49281273 None:intergenic 45.0%
CCTCTAGTGAGAGTTTCCAA+TGG + chr1.2:49281251-49281270 MS.gene029831:CDS 45.0%
CCTTCAAGCGGTAACTTTAG+CGG + chr1.2:49280061-49280080 MS.gene029831:CDS 45.0%
CCTTTGGGTGGAAATGGTAA+TGG + chr1.2:49279480-49279499 MS.gene029831:CDS 45.0%
CGAAGAAACGGAAGCAAGTT+TGG + chr1.2:49281288-49281307 MS.gene029831:CDS 45.0%
CGCGGTTATCCTTATACCAT+TGG - chr1.2:49281270-49281289 None:intergenic 45.0%
CTCTGACCTAGAAGGTTACT+AGG - chr1.2:49280812-49280831 None:intergenic 45.0%
CTTGTTCCTTTGGGTGGAAA+TGG + chr1.2:49279474-49279493 MS.gene029831:CDS 45.0%
GAATATGACTGGGAGGGAAA+AGG + chr1.2:49280022-49280041 MS.gene029831:CDS 45.0%
GCAGATTATGACACTGTTGG+AGG + chr1.2:49279513-49279532 MS.gene029831:CDS 45.0%
GCTGCAGATTATGACACTGT+TGG + chr1.2:49279510-49279529 MS.gene029831:CDS 45.0%
GGAAGCAAGTTTGGAGAGTA+CGG + chr1.2:49281297-49281316 MS.gene029831:CDS 45.0%
GGATTCCACCCTAATGGTAA+TGG - chr1.2:49279903-49279922 None:intergenic 45.0%
GGCTAATAAGCAACCGTTTG+AGG + chr1.2:49280082-49280101 MS.gene029831:CDS 45.0%
GTGCTCTACCGTGATATATC+TGG + chr1.2:49281454-49281473 MS.gene029831:CDS 45.0%
TCGAATCAGAAGATGTCGGT+CGG + chr1.2:49281338-49281357 MS.gene029831:CDS 45.0%
TCTCCACCTCAGTAAAGTTC+AGG + chr1.2:49280916-49280935 MS.gene029831:CDS 45.0%
TCTGATGCTAACAATGGTGG+AGG + chr1.2:49279585-49279604 MS.gene029831:CDS 45.0%
TTCTCTGGCCTAATTCACCT+TGG + chr1.2:49280285-49280304 MS.gene029831:CDS 45.0%
TTTATAGAGGAACACCGAGG+CGG + chr1.2:49279730-49279749 MS.gene029831:CDS 45.0%
TTTCCCTCGTTTGGATTACG+CGG + chr1.2:49279641-49279660 MS.gene029831:CDS 45.0%
! AACTTGCTTCCGTTTCTTCG+CGG - chr1.2:49281288-49281307 None:intergenic 45.0%
! CCCTCCTCTTCAGAACATTT+TGG + chr1.2:49279668-49279687 MS.gene029831:CDS 45.0%
! CTTAAGCTTGTTCCTTTGGG+TGG + chr1.2:49279468-49279487 MS.gene029831:CDS 45.0%
! GAGTACTTTCGGGTAGACAA+CGG - chr1.2:49280844-49280863 None:intergenic 45.0%
! GTGGAGGTTTTTCTGTTCCT+AGG + chr1.2:49279601-49279620 MS.gene029831:CDS 45.0%
! TCTGGAGCAGTCAAACACAT+TGG + chr1.2:49281472-49281491 MS.gene029831:CDS 45.0%
! TGAGACGATTTTCCCTCGTT+TGG + chr1.2:49279632-49279651 MS.gene029831:CDS 45.0%
! TTTCGGGTAGACAACGGAAT+AGG - chr1.2:49280838-49280857 None:intergenic 45.0%
!! AATGTTCTGAAGAGGAGGGT+CGG - chr1.2:49279667-49279686 None:intergenic 45.0%
!! AGTTTGTTGATCCCCTTCTC+TGG + chr1.2:49280270-49280289 MS.gene029831:CDS 45.0%
!! GCCAAAATGTTCTGAAGAGG+AGG - chr1.2:49279672-49279691 None:intergenic 45.0%
!! GGCATCTTTTGACTACTGGT+TGG + chr1.2:49279751-49279770 MS.gene029831:CDS 45.0%
!! GGTAAGACTTGTTGATGACG+AGG - chr1.2:49281223-49281242 None:intergenic 45.0%
!! TACGCCAGAGTTTTGTGTGA+AGG + chr1.2:49280127-49280146 MS.gene029831:CDS 45.0%
AACTCAGGCGCGAATATGAC+TGG + chr1.2:49280011-49280030 MS.gene029831:CDS 50.0%
AAGAAGGGTGAGTCCATGGT+TGG + chr1.2:49280664-49280683 MS.gene029831:CDS 50.0%
AAGATGTTCATGGCGAGACG+TGG + chr1.2:49279694-49279713 MS.gene029831:CDS 50.0%
ACTCAGGCGCGAATATGACT+GGG + chr1.2:49280012-49280031 MS.gene029831:CDS 50.0%
ACTGAAATTTGGCCGTCGAG+GGG - chr1.2:49280779-49280798 None:intergenic 50.0%
ATGGCGAGACGTGGAAGTTT+AGG + chr1.2:49279703-49279722 MS.gene029831:CDS 50.0%
CAACTATGGCATGCTTGTGC+AGG + chr1.2:49279264-49279283 MS.gene029831:CDS 50.0%
CACCTCAGTAAAGTTCAGGC+AGG + chr1.2:49280920-49280939 MS.gene029831:CDS 50.0%
CACTGAAATTTGGCCGTCGA+GGG - chr1.2:49280780-49280799 None:intergenic 50.0%
CCAACAGGATTCCACCCTAA+TGG - chr1.2:49279909-49279928 None:intergenic 50.0%
CCATTAGGGTGGAATCCTGT+TGG + chr1.2:49279906-49279925 MS.gene029831:CDS 50.0%
CCGCTAAAGTTACCGCTTGA+AGG - chr1.2:49280064-49280083 None:intergenic 50.0%
CTGAGGTGGAGATCCGATAT+CGG - chr1.2:49280908-49280927 None:intergenic 50.0%
CTGCCTGAACTTTACTGAGG+TGG - chr1.2:49280922-49280941 None:intergenic 50.0%
GACCTGCCTGAACTTTACTG+AGG - chr1.2:49280925-49280944 None:intergenic 50.0%
GCACAAGCATGCCATAGTTG+AGG - chr1.2:49279264-49279283 None:intergenic 50.0%
GCATGTTCAGCATGACCTTG+AGG - chr1.2:49279336-49279355 None:intergenic 50.0%
GGAAAAGGTTAGGCCAGAAG+CGG + chr1.2:49280037-49280056 MS.gene029831:CDS 50.0%
GGCTGATCCTGAAACAGATG+AGG + chr1.2:49279434-49279453 MS.gene029831:CDS 50.0%
GGTCATGCTGAACATGCATG+TGG + chr1.2:49279339-49279358 MS.gene029831:CDS 50.0%
GGTGAATTAGGCCAGAGAAG+GGG - chr1.2:49280284-49280303 None:intergenic 50.0%
GTAGTCAAAAGATGCCGCCT+CGG - chr1.2:49279747-49279766 None:intergenic 50.0%
GTTACCTGAAGAAGCCTCCA+AGG - chr1.2:49280305-49280324 None:intergenic 50.0%
TCACAAGAAGCTTCTTGCCG+GGG + chr1.2:49279788-49279807 MS.gene029831:CDS 50.0%
TCTGGCCTAATTCACCTTGG+AGG + chr1.2:49280288-49280307 MS.gene029831:CDS 50.0%
TGACTGGGAGGGAAAAGGTT+AGG + chr1.2:49280027-49280046 MS.gene029831:CDS 50.0%
TGCATTGCCGCCTCTACTAA+AGG - chr1.2:49280155-49280174 None:intergenic 50.0%
TGGCCGAAAAGAACAAGCTG+AGG - chr1.2:49281109-49281128 None:intergenic 50.0%
TTCACCTTGGAGGCTTCTTC+AGG + chr1.2:49280298-49280317 MS.gene029831:CDS 50.0%
!! AGGCGGCATCTTTTGACTAC+TGG + chr1.2:49279747-49279766 MS.gene029831:CDS 50.0%
!! ATGCCAGCAGGAGTACTTTC+GGG - chr1.2:49280854-49280873 None:intergenic 50.0%
!! CAAGATGGCCTTTGAAACCG+AGG + chr1.2:49280202-49280221 MS.gene029831:CDS 50.0%
!! CATGCCAGCAGGAGTACTTT+CGG - chr1.2:49280855-49280874 None:intergenic 50.0%
!! TGTGAAGGCGCCTTTAGTAG+AGG + chr1.2:49280142-49280161 MS.gene029831:CDS 50.0%
!!! CTCTCACTAGAGGAGCGTTT+TGG - chr1.2:49281244-49281263 None:intergenic 50.0%
AAGTACTCCTGCTGGCATGC+AGG + chr1.2:49280856-49280875 MS.gene029831:CDS 55.0%
ACGAGGAGTTCCCGAACCAT+CGG - chr1.2:49281206-49281225 None:intergenic 55.0%
ACGCGTAATGCACAGTGCGA+AGG - chr1.2:49280428-49280447 None:intergenic 55.0%
AGGCGCGAATATGACTGGGA+GGG + chr1.2:49280016-49280035 MS.gene029831:CDS 55.0%
AGGCGGCAATGCAGATTCGA+TGG + chr1.2:49280162-49280181 MS.gene029831:CDS 55.0%
AGTACTCCTGCTGGCATGCA+GGG + chr1.2:49280857-49280876 MS.gene029831:CDS 55.0%
CTATGGCATGCTTGTGCAGG+TGG + chr1.2:49279267-49279286 MS.gene029831:CDS 55.0%
CTGAAATTTGGCCGTCGAGG+GGG - chr1.2:49280778-49280797 None:intergenic 55.0%
GCACTGAAATTTGGCCGTCG+AGG - chr1.2:49280781-49280800 None:intergenic 55.0%
GCATGCTTGTGCAGGTGGAA+TGG + chr1.2:49279272-49279291 MS.gene029831:CDS 55.0%
GGAGCCAGGCATGCTCATTA+TGG + chr1.2:49280878-49280897 MS.gene029831:CDS 55.0%
GGCGCCTTCACACAAAACTC+TGG - chr1.2:49280134-49280153 None:intergenic 55.0%
GGGATTCGACGAGCGAAGAA+GGG + chr1.2:49279855-49279874 MS.gene029831:CDS 55.0%
TGGGATTCGACGAGCGAAGA+AGG + chr1.2:49279854-49279873 MS.gene029831:CDS 55.0%
! CGACGAGCGAAGAAGGGTAT+TGG + chr1.2:49279861-49279880 MS.gene029831:CDS 55.0%
! TCAAAAGGCACGAAACCGGC+CGG - chr1.2:49280953-49280972 None:intergenic 55.0%
!! CGAGCGAAGAAGGGTATTGG+TGG + chr1.2:49279864-49279883 MS.gene029831:CDS 55.0%
!! CTACCCGAAAGTACTCCTGC+TGG + chr1.2:49280848-49280867 MS.gene029831:CDS 55.0%
!! GAAGGCGCCTTTAGTAGAGG+CGG + chr1.2:49280145-49280164 MS.gene029831:CDS 55.0%
!! GCGAAGAAGGGTATTGGTGG+TGG + chr1.2:49279867-49279886 MS.gene029831:CDS 55.0%
!! GGGTATTGGTGGTGGACATG+AGG + chr1.2:49279875-49279894 MS.gene029831:CDS 55.0%
AACTCTGGCGTACTTGCGCG+AGG - chr1.2:49280119-49280138 None:intergenic 60.0%
ACCGCTTGAAGGACCGCTTC+TGG - chr1.2:49280053-49280072 None:intergenic 60.0%
ACTCTGGCGTACTTGCGCGA+GGG - chr1.2:49280118-49280137 None:intergenic 60.0%
CACCACGATTTCCCCCTCGA+CGG + chr1.2:49280764-49280783 MS.gene029831:CDS 60.0%
CAGGCAGGTCTATTTCCGGC+CGG + chr1.2:49280935-49280954 MS.gene029831:CDS 60.0%
CAGGCGCGAATATGACTGGG+AGG + chr1.2:49280015-49280034 MS.gene029831:CDS 60.0%
CGGCCGCGTAATCCAAACGA+GGG - chr1.2:49279647-49279666 None:intergenic 60.0%
GCCAGAAGCGGTCCTTCAAG+CGG + chr1.2:49280049-49280068 MS.gene029831:CDS 60.0%
TCGAGGGGGAAATCGTGGTG+TGG - chr1.2:49280764-49280783 None:intergenic 60.0%
TCGGCCGCGTAATCCAAACG+AGG - chr1.2:49279648-49279667 None:intergenic 60.0%
CTGCTGGCATGCAGGGAGCC+AGG + chr1.2:49280864-49280883 MS.gene029831:CDS 70.0%
CTGGCTCCCTGCATGCCAGC+AGG - chr1.2:49280866-49280885 None:intergenic 70.0%
GGCCGTCGAGGGGGAAATCG+TGG - chr1.2:49280769-49280788 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 49279186 49281509 49279186 ID=MS.gene029831
chr1.2 mRNA 49279186 49281509 49279186 ID=MS.gene029831.t1;Parent=MS.gene029831
chr1.2 exon 49279186 49280319 49279186 ID=MS.gene029831.t1.exon1;Parent=MS.gene029831.t1
chr1.2 CDS 49279186 49280319 49279186 ID=cds.MS.gene029831.t1;Parent=MS.gene029831.t1
chr1.2 exon 49280629 49281509 49280629 ID=MS.gene029831.t1.exon2;Parent=MS.gene029831.t1
chr1.2 CDS 49280629 49281509 49280629 ID=cds.MS.gene029831.t1;Parent=MS.gene029831.t1
Gene Sequence

>MS.gene029831

ATGAATATATTTATGGATTCAAGAGATAATAACAATAATAACAATTCATCAGAAGAAGTTGAAAGGTGTTTAGATCCTCAACTATGGCATGCTTGTGCAGGTGGAATGGTTCAGATGCCAACAGTGAACAGTAAAGTTTATTACTTTCCTCAAGGTCATGCTGAACATGCATGTGGACCTGTTAACTTCATGAATTGTCCAAAGGTTTCACCTTTGATTCCATGCAAAGTTTTATCTATTAAGTATATGGCTGATCCTGAAACAGATGAGGTTTATGCTAAGCTTAAGCTTGTTCCTTTGGGTGGAAATGGTAATGGAAATGATGCTGCAGATTATGACACTGTTGGAGGAAATGAAAATCAAGATAAGCCTGTTTCATTTGCAAAGACATTGACTCAATCTGATGCTAACAATGGTGGAGGTTTTTCTGTTCCTAGGTATTGTGCTGAGACGATTTTCCCTCGTTTGGATTACGCGGCCGACCCTCCTCTTCAGAACATTTTGGCTAAAGATGTTCATGGCGAGACGTGGAAGTTTAGGCATATTTATAGAGGAACACCGAGGCGGCATCTTTTGACTACTGGTTGGAGTACTTTTGTTAATCACAAGAAGCTTCTTGCCGGGGATTCGATTGTGTTTTTGAGAGCGGAAAATGGTGATCTTTGTGTTGGGATTCGACGAGCGAAGAAGGGTATTGGTGGTGGACATGAGGATCCATTACCATTAGGGTGGAATCCTGTTGGAGAAAATTTTCCTCTTCCTTGGTTTACACAGAATGAGAATCAAATGGGGAGAAACATTAACAACAACAATAACAATGGTTTGAACTCAGGCGCGAATATGACTGGGAGGGAAAAGGTTAGGCCAGAAGCGGTCCTTCAAGCGGTAACTTTAGCGGCTAATAAGCAACCGTTTGAGGTTATTTACTACCCTCGCGCAAGTACGCCAGAGTTTTGTGTGAAGGCGCCTTTAGTAGAGGCGGCAATGCAGATTCGATGGTGTTCTGGAATAAGATTCAAGATGGCCTTTGAAACCGAGGATTCGTCTCGAATAAGTTGGTTTATGGGAATTGTATCTGGAGTTCAGTTTGTTGATCCCCTTCTCTGGCCTAATTCACCTTGGAGGCTTCTTCAGGTAACACCATATTTTATTAAATTTGATGTCAATTAACAGAACATAAAATTGCATAATACTTAAATATGGTAATCTTCTCTCTTGCTAATCTTTAATTTATGTTATCCTTCGCACTGTGCATTACGCGTACACGTTGAGTTACCACTTGATTACTAAATTAATGAACTCTGATGTTGTTTGTTAATCCATTTAAGAATGTGCTTCTGTTATTTTGTTACCTGTTGAGTTTTGTATGATTTCATTTGATAGGATCATAGGAATATTTGCATTGTGTCTACTCATAATAAGTAGTATTATGATATTTTGTAGGTTAAATGGGATGAACCAGATTTACTGCAAAATGTAAGAAGGGTGAGTCCATGGTTGGTTGAATTAGTAGCAAACATTCCATCCATAAACCTTTCACCTTTCTCACAACCAAGGAAGAAATTGAGATTGTCTCCACACCACGATTTCCCCCTCGACGGCCAAATTTCAGTGCCATCGTTTCCTAGTAACCTTCTAGGTCAGAGCAACCTATTCCGTTGTCTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTTCCGATATCGGATCTCCACCTCAGTAAAGTTCAGGCAGGTCTATTTCCGGCCGGTTTCGTGCCTTTTGATCATGCTGCTAAACTACCTAGTGTCTCTAATAACCTAATGATGCAAAAATCTAGCACGAGTGAGAATGTCTCTTGCTTACTATCCATGGCAAGTTCTACTCAGTCTTCAAAGAAATTCAACGATGAGAAGAAACCTCAGCTTGTTCTTTTCGGCCAAAAAATTCTCACCGAGCAACAAATCTCTAATGACCATTCATCAGATGGAAATACCAATAAAATGGGTAATTTTTCCGATGGTTCGGGAACTCCTCGTCATCAACAAGTCTTACCAAAACGCTCCTCTAGTGAGAGTTTCCAATGGTATAAGGATAACCGCGAAGAAACGGAAGCAAGTTTGGAGAGTACGGATCACTGTAAAGTTTTTCTCGAATCAGAAGATGTCGGTCGGACAATTGACCTTTCTTTACTTGGATCTTATGATGAACTGTACAGAAAGCTGGCAGACATGTTTGGCATAGAAAAATATGAGAAGGTAAGTCGCGTGCTCTACCGTGATATATCTGGAGCAGTCAAACACATTGGAGAGGAACCATTCAG
Protein sequence

>MS.gene029831.t1

MNIFMDSRDNNNNNNSSEEVERCLDPQLWHACAGGMVQMPTVNSKVYYFPQGHAEHACGPVNFMNCPKVSPLIPCKVLSIKYMADPETDEVYAKLKLVPLGGNGNGNDAADYDTVGGNENQDKPVSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLLAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPLPLGWNPVGENFPLPWFTQNENQMGRNINNNNNNGLNSGANMTGREKVRPEAVLQAVTLAANKQPFEVIYYPRASTPEFCVKAPLVEAAMQIRWCSGIRFKMAFETEDSSRISWFMGIVSGVQFVDPLLWPNSPWRLLQVKWDEPDLLQNVRRVSPWLVELVANIPSINLSPFSQPRKKLRLSPHHDFPLDGQISVPSFPSNLLGQSNLFRCLPESTPAGMQGARHAHYGLPISDLHLSKVQAGLFPAGFVPFDHAAKLPSVSNNLMMQKSSTSENVSCLLSMASSTQSSKKFNDEKKPQLVLFGQKILTEQQISNDHSSDGNTNKMGNFSDGSGTPRHQQVLPKRSSSESFQWYKDNREETEASLESTDHCKVFLESEDVGRTIDLSLLGSYDELYRKLADMFGIEKYEKVSRVLYRDISGAVKHIGEEPF