AlfalfaGEDB | MS.gene029881

M. sativa cultivar XinJiangDaYe / MS.gene029881

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029881.t1	XP_024634476.1	96.6	265	9	0	24	288	34	298	3.00E-142	514.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029881.t1	Q8RWU3	65.7	268	83	4	25	284	31	297	3.5e-91	336.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029881.t1	A0A072VW35	96.6	265	9	0	24	288	34	298	2.1e-142	514.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene029881.t1	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029881.t1	MTR_1g067000	96.875	288	9	0	1	288	11	298	0.0	579
MS.gene029881.t1	MTR_0123s0070	54.275	269	109	5	7	265	18	282	2.82e-88	266
MS.gene029881.t1	MTR_0123s0070	54.826	259	103	5	7	255	18	272	1.75e-85	258
MS.gene029881.t1	MTR_8g028655	51.711	263	111	4	25	272	52	313	2.90e-84	256
MS.gene029881.t1	MTR_6g477860	56.250	112	38	2	18	118	38	149	2.51e-26	107
MS.gene029881.t1	MTR_3g064500	57.143	98	34	1	26	115	46	143	4.78e-26	105
MS.gene029881.t1	MTR_5g076960	55.856	111	36	3	18	120	24	129	5.93e-25	103
MS.gene029881.t1	MTR_7g118330	57.143	70	30	0	18	87	7	76	7.87e-23	98.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029881.t1	AT3G09600	67.050	261	79	3	11	265	17	276	3.46e-126	362
MS.gene029881.t1	AT3G09600	67.050	261	79	3	11	265	17	276	3.46e-126	362
MS.gene029881.t1	AT3G09600	66.171	269	78	4	11	273	17	278	2.20e-123	354
MS.gene029881.t1	AT3G09600	66.171	269	78	4	11	273	17	278	2.20e-123	354
MS.gene029881.t1	AT3G09600	68.526	251	72	3	11	255	17	266	2.47e-123	353
MS.gene029881.t1	AT5G02840	64.706	255	77	4	20	263	31	283	1.73e-112	326
MS.gene029881.t1	AT5G02840	62.452	261	85	4	20	269	31	289	2.23e-110	321
MS.gene029881.t1	AT5G02840	62.452	261	85	4	20	269	31	289	2.23e-110	321
MS.gene029881.t1	AT3G09600	65.899	217	67	3	55	265	5	220	1.37e-100	295
MS.gene029881.t1	AT3G09600	65.899	217	67	3	55	265	5	220	1.37e-100	295

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Find 61 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAATGGATGCTGGTAG+TGG	0.539195	1.4:+53872508	None:intergenic
AAATTGCTAGTGGTCAGTAG+TGG	0.620002	1.4:+53868345	None:intergenic
AACAATCTTCAAGGAAATGA+AGG	0.487995	1.4:-53872397	MS.gene029881:intron
ACAACAACTACAACAACTAG+TGG	0.647197	1.4:-53873553	MS.gene029881:CDS
ACAACTACAACAACTAGTGG+TGG	0.601385	1.4:-53873550	MS.gene029881:CDS
ACACAAAATCCCGTGATTCA+TGG	0.453178	1.4:-53872148	MS.gene029881:intron
ACCTGCAGGGTATGTCACGT+GGG	0.625418	1.4:-53872461	MS.gene029881:CDS
ACTAGTGGTGGAGATGCTTC+TGG	0.418390	1.4:-53873538	MS.gene029881:CDS
ACTTCTCAAATACCAACGCA+AGG	0.604376	1.4:-53872172	MS.gene029881:CDS
AGACCAGCTTTCTCTTGACT+TGG	0.533707	1.4:+53873486	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAATTTCTACGGCAATT+TGG	+	chr1.4:53869309-53869328	None:intergenic	30.0%
AACAATCTTCAAGGAAATGA+AGG	-	chr1.4:53869540-53869559	MS.gene029881:intron	30.0%
AACTGGACAACAAATTTCTA+CGG	+	chr1.4:53869317-53869336	None:intergenic	30.0%
AATCCCATTCTTGAGAATTA+GGG	+	chr1.4:53873124-53873143	None:intergenic	30.0%
AATGGACGATTAATTACGTT+TGG	+	chr1.4:53869269-53869288	None:intergenic	30.0%
AGAAGAATAGGGACATTATA+CGG	+	chr1.4:53871416-53871435	None:intergenic	30.0%
AGCATCACTAACTCTATATT+CGG	+	chr1.4:53873378-53873397	None:intergenic	30.0%
AGCCCTAATTTAATTCTCAA+TGG	+	chr1.4:53872469-53872488	None:intergenic	30.0%
ATATTACCTACCAATGCAAT+GGG	+	chr1.4:53872176-53872195	None:intergenic	30.0%
ATCATGGATATTTAGACATC+TGG	-	chr1.4:53869110-53869129	MS.gene029881:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	53868351	53873608	53868351	ID=MS.gene029881
chr1.4	mRNA	53868351	53873608	53868351	ID=MS.gene029881.t1;Parent=MS.gene029881
chr1.4	exon	53873448	53873608	53873448	ID=MS.gene029881.t1.exon1;Parent=MS.gene029881.t1
chr1.4	CDS	53873448	53873608	53873448	ID=cds.MS.gene029881.t1;Parent=MS.gene029881.t1
chr1.4	exon	53873297	53873354	53873297	ID=MS.gene029881.t1.exon2;Parent=MS.gene029881.t1
chr1.4	CDS	53873297	53873354	53873297	ID=cds.MS.gene029881.t1;Parent=MS.gene029881.t1
chr1.4	exon	53873042	53873165	53873042	ID=MS.gene029881.t1.exon3;Parent=MS.gene029881.t1
chr1.4	CDS	53873042	53873165	53873042	ID=cds.MS.gene029881.t1;Parent=MS.gene029881.t1
chr1.4	exon	53872398	53872538	53872398	ID=MS.gene029881.t1.exon4;Parent=MS.gene029881.t1
chr1.4	CDS	53872398	53872538	53872398	ID=cds.MS.gene029881.t1;Parent=MS.gene029881.t1
chr1.4	exon	53872149	53872265	53872149	ID=MS.gene029881.t1.exon5;Parent=MS.gene029881.t1
chr1.4	CDS	53872149	53872265	53872149	ID=cds.MS.gene029881.t1;Parent=MS.gene029881.t1
chr1.4	exon	53871666	53871775	53871666	ID=MS.gene029881.t1.exon6;Parent=MS.gene029881.t1
chr1.4	CDS	53871666	53871775	53871666	ID=cds.MS.gene029881.t1;Parent=MS.gene029881.t1
chr1.4	exon	53870303	53870362	53870303	ID=MS.gene029881.t1.exon7;Parent=MS.gene029881.t1
chr1.4	CDS	53870303	53870362	53870303	ID=cds.MS.gene029881.t1;Parent=MS.gene029881.t1
chr1.4	exon	53868351	53868455	53868351	ID=MS.gene029881.t1.exon8;Parent=MS.gene029881.t1
chr1.4	CDS	53868351	53868455	53868351	ID=cds.MS.gene029881.t1;Parent=MS.gene029881.t1

Gene Sequence

>MS.gene029881

ATGAACTCTAATTCTAACTCAATGGCAGCACCAACAACAACTACAACAACTAGTGGTGGAGATGCTTCTGGTAAGAAGGTTAGAAAGCCTTACACAATTACCAAGTCAAGAGAAAGCTGGTCTGATGAAGAACATGACAAGTTTCTTGAAGCTCTACAATTGTTTGTCTCTCCATCTACCTTCAATCTTATATCATTCTTTTTTTTTTTCTTTTAATATTCAAAAGTACTCATCATATCTTCTACTTTATTCAGATTTGATAGAGATTGGAAGAAGATTGAAGATTTTGTTGGCTCTAAAACAGTTATTCAGGTTAATTAGTAAGCCATGTCTTTACTTTTTTTTTTTTTTTAATTAATATAGTATTTTATTATTCTATTCACTAACTATAATAACTTATCTTTTGTTAAAAAAAAAAAAAAAAAAACTAAAACTTATTTCAGATTCGAAGTCATGCCCAAAAATACTTCTTAAAGGTTCAAAAGAATGGAACACTAGCTCATGTCCCTCCTCCTCGTCCTAAGCGCAAAGCTATTCATCCTTATCCACAAAAAGCAACAAAAAATGGTTTGTTTTCTTTTTCTTTTTCTTTTATCTTTTTACTTGGAATAGATCAGTGTTATTTTGACAGAAAATGAAACAGATCAGTAGATGAACAATATGTAAAACAAGGTTTTGCATCTCATTTATCATTTTTACTAACACATTTAACCACAATTTTCGATGTATTTATTTGAAAACAAATTGTGGCTAATGAATATCATGGATATTTAGACATCTGGAAATTCATGTATATTTGAATACAATTTGAGTGATCAAGTGATATTATATATATTTGACGTTGAACACTTGAAAATTGTGGCTAAGTACATGGTTAATGAGCTGTGACATTTTTTTATATTCATCAATCATTCACCAAACGTAATTAATCGTCCATTTAAACTGAGTTAATCATCCAAATTGCCGTAGAAATTTGTTGTCCAGTTAAATTTGTGTCAAAATATCAGAAATCTTAAAACACAAGATTTCATGCATCCTTAAAAATTGCTACTTTTTGTGTCACTTACCAGTTTTGGTGCCACTACCAGCATCCATTGCTTTTGGCTCTTCGGCAAATACCCTTCTACCTGCAGGGTATGTCACGTGGGATGAAACGTCCATGCTGATGAATACTTGTCAGGATGAACTCAACAATCTTCAAGGAAATGAAGGTATGCATAATGCATGTTATGGATTCTTCTCTTTAGTGTTGTTTGAATTTTGATGCCAATAGTCTAGATTGGCTAGCTGAACTTAAAGGAACTTGCCACTACTTATTATGTTATATGATTTTACTGATTTAGCTGACATTGGATCAAAGGGGATCAGCAACAGCGGTCTTAGTGGTGTTGAAGATACTAATACAAGGCTCCCTACTTCTCAAATACCAACGCAAGGGACACAAAATCCCGTGATTCATGGTAATCGTCTGCGACAGGTCTTCTAATTTTAAGTTTTGAAACAATACTCGGCCTCGCATCTAGAAAGTTGTTTCCGTAGTATCATATAATATAAACTATTGAGTTTATGGAAATCCTTGAGGTGGAAAATGATCTTGTGATTCATAATAATCTTCTGCGACAAATTCATACATTTTAAGTTGTGAAACAATACTAGGCCTCACATATAAAAAGTTGCATGCATAGGATCATATAGTATATAAATAATACTGAGTTTATTGAAATCCTTGAGGTGGCAAATGATCTTGTGATATGTTGATTTTTGTTTTTAATTCATTTTTCAGAATGAATTAGTGACCACTGTTTTGTCTGTCATTCTGTCGATATTTAACAGGTTTGCCGGACTTTGCTGAAGTTTACGGTTTCATTGGAAGTGTTTTTGATCCGGATACAAACGGCCATGTGCAGAAGCTGAAGGAAATGGACCCTATAAACTTTGAAACTGTGAGTTGATTACTTGAATGAAATTTATTAGCATATAATCTGATATCATCCTCAACAGAAGTAACTACTGAGATGAAACTTAGCTATATAATCAGATAGGTGTTGAATCATTTGATAAAAAATCAACACTACATGAGACAAAACAAGAACCTACAGGATGCATGATAAACTCATAATTTTTTTTTTTTAGAATCAGCAAAATTTACTCCCTCCGTCCCTATATGTAACCACCCTTTCCCTCTAATAAAAGGGTGTTTACATATAGGGACGGAGGGAGTATTTACTACGAGCGTGTGCAAGAAACACAACAAAAACTCGCAATCAGCAGGGAACAATTACATCAGGCACTGATATAGCAGAAGCCCATCTGTTATAACAGCAAACAGAAAAAAACCAGCAAACCAGAAAAAAAAAACAGCCGATATCAGACAGAAAGAGACCAGCCAGCAGCAAAAAACAGAAAAAACCTGAGGCTGGCATATACAGAACCGCAAAAAACAGCAGGAAACAGCTGACAGCAGACACCGCATACCCCAGCCTCAACCTCCGCCTTACCAAAGCAGCTCCATTAACGGATAAGGCACCCTCTCGGACACCAACACCATTCATAAAACAAACACGCCGGCCCCTTCATACGACTCAACATCCACCTCCACGACAAAACCTTAATCGCCTCCACTAACTCCGCTACTCCGCAAATTAACTCTGGAGAAACTATTAGGCCAAATTGACACTTTAAGAGCCTTTGAATTTCATCTAAAAAGCTTGAGGAAGGGGAAATTATTATTCACTAATGTGGCACAAAAACCATTTTACAACTGTCTCTTAGGGGATTTGAACTTCATCCTTTGATATTATAAGGTCAAACTCTTGTCACTAAGCCGACGGCTCATGGGCAGTTTTTTAAGATCATTAACAACATTATGATTTTCAATCTATAGCATAGCACTCAATCTTGTCATCATTGATTTATGTTTCATAACTTCTGATATATGCTTGAAATGCTATCTGTGCATGGATGAAAAAAGTAAGTGACACTAATTCCCATGTTAAGAGGCTTAAAACAACATACCACTTGCCAAACTGTCTTCACTAAGGGAGTATTTCCAATTTATTCACCCGTATAATGTCCCTATTCTTCTGATTCTCATATTCACTTACCTCCCCTCTTTTCTGCATTAACTAGGAAATCAAAACGAGGCAAAAAATGACTAATGAGTAAATAAACTTCTTTTTGTACAAATACAAACTGTTTTTGTAATTCTTAGTTTACTGACTGTGTATATTTGATGTTCTTGTGCAGGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTAATTTTGATCCCATTGTAAGTTTCAATATCAATCTCAGTAAAAATTATATAGTTTTGTAACATACTGGCCCAGAAAGTTTATTTTGTTTTCAATGAAATGTAATTGTATTCATTCCAAGTTTCATTCTGGTTTCTAAGCATGCATTGTTCTGTTTGATCTGCACTAATTTTGATCCCAATGTAAGTCTTCCCATAGTCACTATATTTATGAATAAATTAAATAAGAGGAGTGTTTAATCCCTTGACTATGGCTCTGAATCCAAATCTCTCAAGTTCATGCACAATTTTTTGTCATAATATCTACAATACATGTCCCTGCATTAACTTGTGACTTGCTCTTTATTGCTTTTTTTACCTCAAGCCCCTAATTACTTGAAAAACTAAAATAGTTTTTAGGTTAATAAACACGCATAACGTTTATAGGTTGTTTAGTGTGCAAACATATATGCAGATAATTTTTATCGAGACTAAACAACCTATAAACGTTATGCACAAGAACCTGAGTTTGAATCTAGTTGCTGAGGAGAGGACCCCATTGCATTGGTAGGTAATATGTAGGTGCCTCTATAAGTTCTCTCTGAGCTTTGAGGCATTCTCCGATCCTAGTAACCCTGGGACTCAACTCGCGAAAACTTTAATTTATAAAAAAATACAAATTAAGAGCATATACTCGAATTTCATAAAATTGTTATGCATTTATTTTTAGATTAAAAAATGTATTTAATATCTTACCTTTTGTAATAGACCAACACTTATTTTTTGGATCAGTCCCTAATTCGAAATAAGCTGAAAATGTTAGCCGTCAACACTCGGTGGATTTAGTCCCATTGAGAATTAAATTAGGGCTAATCTGACCTGGTGAGTTGTCTTGAGATTTAGGGCTAATCTGACCTGGTGGGTTGTCTTGAGAATTAGGGCTAATCTGAGCTGGTTGTGTGATGGGAGAGTCATGGGCATCAGACATAGTAGATAACCTAGAAGGCCGAATTTGAAAGGCGCGACGCCATGGACGAAGATCACCTCGTTTATTTTTTTGTGCCGCCGCTGTAATCAATAGGCTCCCAAAGTATGCTGTAGCCAATTTACAGCATCAACATGCATTCATCCAACGCCAATTTGCCTCCAACTCCAAAAAACCATTGAAATCTATGGCCTCAGAAGTAAAAATGAAAAGAGAAAACCCTTTAGCAGCAACATGACACTCTTGAGAAAGGCAATGAAGAAATAAATGGAGAAGAAGGGAGGGAAGGAGGCTGAGATTGCCAAGACCTCGATTACAATTAGGCAGAAGCACTCACGAAAAGGAGATCTTCGTCCATGTCGTCGTGCCTTTCAAATTCGGCCTTCTAGGTTATCTACTGTGTCTGATGCCCATGACTCTCCCATCACACAACCAGCTCAGATTAGCCCTAATTCTCAAGACAACCCACCAGGTCAGATTAGCCCTAATTCTCAAGACAACTCACCAGGTCAGATCAGCCCTAATTCTCAAGAATGGGATTAAATCCACTGAGTGTTGGCTGCTAACAGAAAAGAATCCCTTCCACTGGGGTCCAAGAAATTTTCTTAACAGGAAAGCAATGAAGAGCTTCACCATTAAATTATTCTTTAATAAAAGGATTGAATAATCTCACAGCATCAAACTTCACCTCAGTTTCTTGATCTTCTGCCTACTTATCATGACTAGCGAATGACTATCTCATCTAGTCATCTGCTTCAATCTCGGATTAAGGCCGAATATAGAGTTAGTGATGCTTAATCATTGTAAAGAAGTTCTTATGAATGAGGTGCAGTGAAAATTTTGTGTAATTATCCTTGAATATTAAATATAATTAGTTTATCTTTATTGCTTCGTTGTTCAGAAGAAGGCAATGTCAACATATGATGAGAATAGCGATGCAGTAGAAGCTAATGATGTGAAGAAGCAAACAAATGATGTATCATGTCAAACCACTACTGACCACTAG

Protein sequence

>MS.gene029881.t1

MNSNSNSMAAPTTTTTTSGGDASGKKVRKPYTITKSRESWSDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAIHPYPQKATKNVLVPLPASIAFGSSANTLLPAGYVTWDETSMLMNTCQDELNNLQGNEADIGSKGISNSGLSGVEDTNTRLPTSQIPTQGTQNPVIHGLPDFAEVYGFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPNFDPIKKAMSTYDENSDAVEANDVKKQTNDVSCQTTTDH