Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029881.t1 | XP_024634476.1 | 96.6 | 265 | 9 | 0 | 24 | 288 | 34 | 298 | 3.00E-142 | 514.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029881.t1 | Q8RWU3 | 65.7 | 268 | 83 | 4 | 25 | 284 | 31 | 297 | 3.5e-91 | 336.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029881.t1 | A0A072VW35 | 96.6 | 265 | 9 | 0 | 24 | 288 | 34 | 298 | 2.1e-142 | 514.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene029881.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029881.t1 | MTR_1g067000 | 96.875 | 288 | 9 | 0 | 1 | 288 | 11 | 298 | 0.0 | 579 |
| MS.gene029881.t1 | MTR_0123s0070 | 54.275 | 269 | 109 | 5 | 7 | 265 | 18 | 282 | 2.82e-88 | 266 |
| MS.gene029881.t1 | MTR_0123s0070 | 54.826 | 259 | 103 | 5 | 7 | 255 | 18 | 272 | 1.75e-85 | 258 |
| MS.gene029881.t1 | MTR_8g028655 | 51.711 | 263 | 111 | 4 | 25 | 272 | 52 | 313 | 2.90e-84 | 256 |
| MS.gene029881.t1 | MTR_6g477860 | 56.250 | 112 | 38 | 2 | 18 | 118 | 38 | 149 | 2.51e-26 | 107 |
| MS.gene029881.t1 | MTR_3g064500 | 57.143 | 98 | 34 | 1 | 26 | 115 | 46 | 143 | 4.78e-26 | 105 |
| MS.gene029881.t1 | MTR_5g076960 | 55.856 | 111 | 36 | 3 | 18 | 120 | 24 | 129 | 5.93e-25 | 103 |
| MS.gene029881.t1 | MTR_7g118330 | 57.143 | 70 | 30 | 0 | 18 | 87 | 7 | 76 | 7.87e-23 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029881.t1 | AT3G09600 | 67.050 | 261 | 79 | 3 | 11 | 265 | 17 | 276 | 3.46e-126 | 362 |
| MS.gene029881.t1 | AT3G09600 | 67.050 | 261 | 79 | 3 | 11 | 265 | 17 | 276 | 3.46e-126 | 362 |
| MS.gene029881.t1 | AT3G09600 | 66.171 | 269 | 78 | 4 | 11 | 273 | 17 | 278 | 2.20e-123 | 354 |
| MS.gene029881.t1 | AT3G09600 | 66.171 | 269 | 78 | 4 | 11 | 273 | 17 | 278 | 2.20e-123 | 354 |
| MS.gene029881.t1 | AT3G09600 | 68.526 | 251 | 72 | 3 | 11 | 255 | 17 | 266 | 2.47e-123 | 353 |
| MS.gene029881.t1 | AT5G02840 | 64.706 | 255 | 77 | 4 | 20 | 263 | 31 | 283 | 1.73e-112 | 326 |
| MS.gene029881.t1 | AT5G02840 | 62.452 | 261 | 85 | 4 | 20 | 269 | 31 | 289 | 2.23e-110 | 321 |
| MS.gene029881.t1 | AT5G02840 | 62.452 | 261 | 85 | 4 | 20 | 269 | 31 | 289 | 2.23e-110 | 321 |
| MS.gene029881.t1 | AT3G09600 | 65.899 | 217 | 67 | 3 | 55 | 265 | 5 | 220 | 1.37e-100 | 295 |
| MS.gene029881.t1 | AT3G09600 | 65.899 | 217 | 67 | 3 | 55 | 265 | 5 | 220 | 1.37e-100 | 295 |
| MS.gene029881.t1 | AT3G09600 | 64.889 | 225 | 66 | 4 | 55 | 273 | 5 | 222 | 8.62e-98 | 287 |
| MS.gene029881.t1 | AT3G09600 | 64.889 | 225 | 66 | 4 | 55 | 273 | 5 | 222 | 8.62e-98 | 287 |
| MS.gene029881.t1 | AT5G02840 | 63.913 | 230 | 70 | 4 | 20 | 238 | 31 | 258 | 1.50e-97 | 288 |
| MS.gene029881.t1 | AT5G02840 | 63.478 | 230 | 71 | 4 | 20 | 238 | 31 | 258 | 4.00e-97 | 287 |
| MS.gene029881.t1 | AT5G52660 | 53.571 | 280 | 120 | 4 | 10 | 281 | 45 | 322 | 1.07e-88 | 268 |
| MS.gene029881.t1 | AT5G52660 | 51.957 | 281 | 124 | 4 | 10 | 281 | 45 | 323 | 1.16e-87 | 265 |
| MS.gene029881.t1 | AT1G01520 | 55.000 | 260 | 93 | 6 | 16 | 265 | 40 | 285 | 5.15e-85 | 256 |
| MS.gene029881.t1 | AT4G01280 | 51.636 | 275 | 110 | 6 | 7 | 264 | 29 | 297 | 1.84e-83 | 253 |
| MS.gene029881.t1 | AT1G01520 | 56.000 | 250 | 86 | 6 | 16 | 255 | 40 | 275 | 1.40e-82 | 250 |
| MS.gene029881.t1 | AT4G01280 | 51.460 | 274 | 111 | 7 | 7 | 264 | 29 | 296 | 2.29e-82 | 250 |
| MS.gene029881.t1 | AT1G01520 | 54.506 | 233 | 82 | 6 | 16 | 238 | 40 | 258 | 7.75e-72 | 222 |
| MS.gene029881.t1 | AT1G01520 | 54.506 | 233 | 82 | 6 | 16 | 238 | 40 | 258 | 7.75e-72 | 222 |
| MS.gene029881.t1 | AT5G17300 | 55.000 | 100 | 37 | 1 | 19 | 110 | 37 | 136 | 1.66e-27 | 110 |
| MS.gene029881.t1 | AT5G37260 | 56.701 | 97 | 38 | 1 | 18 | 110 | 17 | 113 | 1.85e-26 | 105 |
| MS.gene029881.t1 | AT1G01520 | 71.429 | 63 | 18 | 0 | 203 | 265 | 139 | 201 | 2.90e-26 | 102 |
| MS.gene029881.t1 | AT1G18330 | 55.319 | 94 | 34 | 2 | 26 | 111 | 39 | 132 | 2.04e-24 | 101 |
| MS.gene029881.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 16 | 95 | 3 | 82 | 2.24e-24 | 103 |
| MS.gene029881.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 16 | 95 | 3 | 82 | 2.24e-24 | 103 |
| MS.gene029881.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 16 | 95 | 3 | 82 | 2.24e-24 | 103 |
| MS.gene029881.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 16 | 95 | 3 | 82 | 2.24e-24 | 103 |
| MS.gene029881.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 16 | 95 | 3 | 82 | 2.24e-24 | 103 |
| MS.gene029881.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 16 | 95 | 3 | 82 | 2.26e-24 | 103 |
| MS.gene029881.t1 | AT3G10113 | 55.319 | 94 | 34 | 2 | 26 | 111 | 54 | 147 | 3.50e-24 | 100 |
| MS.gene029881.t1 | AT1G18330 | 55.319 | 94 | 34 | 2 | 26 | 111 | 65 | 158 | 3.87e-24 | 100 |
| MS.gene029881.t1 | AT2G46830 | 59.722 | 72 | 29 | 0 | 16 | 87 | 3 | 74 | 2.47e-23 | 100 |
Find 61 sgRNAs with CRISPR-Local
Find 361 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACAATGGGATCAAAATT+AGG | 0.151868 | 1.4:+53870298 | None:intergenic |
| CTACCAGCATCCATTGCTTT+TGG | 0.209435 | 1.4:-53872505 | MS.gene029881:CDS |
| CCGGACTTTGCTGAAGTTTA+CGG | 0.260906 | 1.4:-53871748 | MS.gene029881:CDS |
| TGAGTTAGAATTAGAGTTCA+TGG | 0.279860 | 1.4:+53873588 | None:intergenic |
| CTCACAGTTTCAAAGTTTAT+AGG | 0.310240 | 1.4:+53871661 | None:intergenic |
| TGGCTCTAAAACAGTTATTC+AGG | 0.322186 | 1.4:-53873296 | MS.gene029881:intron |
| CTTGACTTGGTAATTGTGTA+AGG | 0.342024 | 1.4:+53873499 | None:intergenic |
| TCACAGTTTCAAAGTTTATA+GGG | 0.345459 | 1.4:+53871662 | None:intergenic |
| TCGATATTTAACAGGTTTGC+CGG | 0.350852 | 1.4:-53871767 | MS.gene029881:intron |
| TTACAATGGGATCAAAATTA+GGG | 0.364435 | 1.4:+53870299 | None:intergenic |
| CTAGTTGTTGTAGTTGTTGT+TGG | 0.376561 | 1.4:+53873556 | None:intergenic |
| TATTCAGATTTGATAGAGAT+TGG | 0.391995 | 1.4:-53873339 | MS.gene029881:intron |
| TTCTTAAAGGTTCAAAAGAA+TGG | 0.393543 | 1.4:-53873119 | MS.gene029881:CDS |
| TGCACATGGCCGTTTGTATC+CGG | 0.400201 | 1.4:+53871703 | None:intergenic |
| TGACATACCCTGCAGGTAGA+AGG | 0.407875 | 1.4:+53872467 | None:intergenic |
| GGATGAATAGCTTTGCGCTT+AGG | 0.413895 | 1.4:+53873068 | None:intergenic |
| ACTAGTGGTGGAGATGCTTC+TGG | 0.418390 | 1.4:-53873538 | MS.gene029881:CDS |
| GCTGAAGTTTACGGTTTCAT+TGG | 0.426347 | 1.4:-53871739 | MS.gene029881:CDS |
| GATGAACTCAACAATCTTCA+AGG | 0.432102 | 1.4:-53872406 | MS.gene029881:CDS |
| TTAGCTGACATTGGATCAAA+GGG | 0.440291 | 1.4:-53872247 | MS.gene029881:intron |
| TGTGCAGAAGCTGAAGGAAA+TGG | 0.443024 | 1.4:-53871686 | MS.gene029881:CDS |
| ACACAAAATCCCGTGATTCA+TGG | 0.453178 | 1.4:-53872148 | MS.gene029881:intron |
| TTTACTGATTTAGCTGACAT+TGG | 0.472761 | 1.4:-53872256 | MS.gene029881:intron |
| TGCGTTGGTATTTGAGAAGT+AGG | 0.483111 | 1.4:+53872175 | None:intergenic |
| TTTCCTTCAGCTTCTGCACA+TGG | 0.485443 | 1.4:+53871689 | None:intergenic |
| AACAATCTTCAAGGAAATGA+AGG | 0.487995 | 1.4:-53872397 | MS.gene029881:intron |
| TTGCGCTTAGGACGAGGAGG+AGG | 0.489119 | 1.4:+53873080 | None:intergenic |
| ATCAGCAACAGCGGTCTTAG+TGG | 0.492479 | 1.4:-53872223 | MS.gene029881:CDS |
| GAACTCTAATTCTAACTCAA+TGG | 0.493422 | 1.4:-53873584 | MS.gene029881:CDS |
| GCAAATACCCTTCTACCTGC+AGG | 0.497509 | 1.4:-53872475 | MS.gene029881:CDS |
| GAGCCAAAAGCAATGGATGC+TGG | 0.501558 | 1.4:+53872502 | None:intergenic |
| CATGCTGATGAATACTTGTC+AGG | 0.511561 | 1.4:-53872428 | MS.gene029881:CDS |
| TTTAGCTGACATTGGATCAA+AGG | 0.530841 | 1.4:-53872248 | MS.gene029881:intron |
| CCGTAAACTTCAGCAAAGTC+CGG | 0.533484 | 1.4:+53871748 | None:intergenic |
| GCGTTGGTATTTGAGAAGTA+GGG | 0.533606 | 1.4:+53872176 | None:intergenic |
| AGACCAGCTTTCTCTTGACT+TGG | 0.533707 | 1.4:+53873486 | None:intergenic |
| AAAGCAATGGATGCTGGTAG+TGG | 0.539195 | 1.4:+53872508 | None:intergenic |
| TGGAGATGCTTCTGGTAAGA+AGG | 0.544373 | 1.4:-53873530 | MS.gene029881:CDS |
| TACCTGCAGGGTATGTCACG+TGG | 0.562293 | 1.4:-53872462 | MS.gene029881:CDS |
| ATAGCTTTGCGCTTAGGACG+AGG | 0.563263 | 1.4:+53873074 | None:intergenic |
| GACATACCCTGCAGGTAGAA+GGG | 0.588018 | 1.4:+53872468 | None:intergenic |
| TTACCAAGTCAAGAGAAAGC+TGG | 0.591540 | 1.4:-53873489 | MS.gene029881:CDS |
| TGCCGAAGAGCCAAAAGCAA+TGG | 0.592704 | 1.4:+53872495 | None:intergenic |
| ACAACTACAACAACTAGTGG+TGG | 0.601385 | 1.4:-53873550 | MS.gene029881:CDS |
| ACTTCTCAAATACCAACGCA+AGG | 0.604376 | 1.4:-53872172 | MS.gene029881:CDS |
| CAAATACCCTTCTACCTGCA+GGG | 0.604923 | 1.4:-53872474 | MS.gene029881:CDS |
| CGGCCATGTGCAGAAGCTGA+AGG | 0.613903 | 1.4:-53871692 | MS.gene029881:CDS |
| AAATTGCTAGTGGTCAGTAG+TGG | 0.620002 | 1.4:+53868345 | None:intergenic |
| TGCGCTTAGGACGAGGAGGA+GGG | 0.622142 | 1.4:+53873081 | None:intergenic |
| ACCTGCAGGGTATGTCACGT+GGG | 0.625418 | 1.4:-53872461 | MS.gene029881:CDS |
| CAGACGATTACCATGAATCA+CGG | 0.628602 | 1.4:+53872138 | None:intergenic |
| AGACGATTACCATGAATCAC+GGG | 0.628967 | 1.4:+53872139 | None:intergenic |
| TCCCACGTGACATACCCTGC+AGG | 0.633438 | 1.4:+53872460 | None:intergenic |
| CTGACAAGTATTCATCAGCA+TGG | 0.637093 | 1.4:+53872429 | None:intergenic |
| ACAACAACTACAACAACTAG+TGG | 0.647197 | 1.4:-53873553 | MS.gene029881:CDS |
| GGCTAGACAAGTTGACAGTG+AGG | 0.653452 | 1.4:+53870320 | None:intergenic |
| CTTCTCAAATACCAACGCAA+GGG | 0.669437 | 1.4:-53872171 | MS.gene029881:CDS |
| TCAAAGGGGATCAGCAACAG+CGG | 0.674075 | 1.4:-53872232 | MS.gene029881:CDS |
| GTGTTGAAGATACTAATACA+AGG | 0.674684 | 1.4:-53872201 | MS.gene029881:CDS |
| GCTTTGCGCTTAGGACGAGG+AGG | 0.703477 | 1.4:+53873077 | None:intergenic |
| TAGCTGACATTGGATCAAAG+GGG | 0.749798 | 1.4:-53872246 | MS.gene029881:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATTATATTTAATATTCA+AGG | + | chr1.4:53873458-53873477 | None:intergenic | 10.0% |
| !! | TTATGAATAAATTAAATAAG+AGG | - | chr1.4:53871847-53871866 | MS.gene029881:intron | 10.0% |
| !! | AAAAAAAAAAAGTAAAGACA+TGG | + | chr1.4:53868679-53868698 | None:intergenic | 15.0% |
| !! | AATATAAACTATTGAGTTTA+TGG | - | chr1.4:53869898-53869917 | MS.gene029881:intron | 15.0% |
| !! | ATTTATTTGAAAACAAATTG+TGG | - | chr1.4:53869078-53869097 | MS.gene029881:intron | 15.0% |
| !! | GTTTATATTATATGATACTA+CGG | + | chr1.4:53869887-53869906 | None:intergenic | 15.0% |
| !!! | GAAAAACTAAAATAGTTTTT+AGG | - | chr1.4:53872016-53872035 | MS.gene029881:intron | 15.0% |
| !!! | TTTAGTTTTTCAAGTAATTA+GGG | + | chr1.4:53872007-53872026 | None:intergenic | 15.0% |
| !!! | TTTTAGTTTTTCAAGTAATT+AGG | + | chr1.4:53872008-53872027 | None:intergenic | 15.0% |
| !!! | TTTTCTTTTATCTTTTTACT+TGG | - | chr1.4:53868935-53868954 | MS.gene029881:intron | 15.0% |
| !! | AAAGAATGATATAAGATTGA+AGG | + | chr1.4:53868532-53868551 | None:intergenic | 20.0% |
| !! | AATAAATACATCGAAAATTG+TGG | + | chr1.4:53869065-53869084 | None:intergenic | 20.0% |
| !! | ATTCATAAATATAGTGACTA+TGG | + | chr1.4:53871835-53871854 | None:intergenic | 20.0% |
| !! | ATTGATATTGAAACTTACAA+TGG | + | chr1.4:53871655-53871674 | None:intergenic | 20.0% |
| !! | GAAAACAAAATAAACTTTCT+GGG | + | chr1.4:53871713-53871732 | None:intergenic | 20.0% |
| !! | GAAATTATTATTCACTAATG+TGG | - | chr1.4:53871070-53871089 | MS.gene029881:intron | 20.0% |
| !! | TCATATAACATAATAAGTAG+TGG | + | chr1.4:53869660-53869679 | None:intergenic | 20.0% |
| !! | TGAAAACAAAATAAACTTTC+TGG | + | chr1.4:53871714-53871733 | None:intergenic | 20.0% |
| !! | TTCATAAATATAGTGACTAT+GGG | + | chr1.4:53871834-53871853 | None:intergenic | 20.0% |
| !! | TTGATATTGAAACTTACAAT+GGG | + | chr1.4:53871654-53871673 | None:intergenic | 20.0% |
| !!! | AACCTTTAAGAAGTATTTTT+GGG | + | chr1.4:53868810-53868829 | None:intergenic | 20.0% |
| !!! | ACAAAAAGTAGCAATTTTTA+AGG | + | chr1.4:53869389-53869408 | None:intergenic | 20.0% |
| !!! | TATATAGTTTTGTAACATAC+TGG | - | chr1.4:53871687-53871706 | MS.gene029881:CDS | 20.0% |
| !!! | TATTTTGACACAAATTTAAC+TGG | + | chr1.4:53869334-53869353 | None:intergenic | 20.0% |
| !!! | TTAAGTTTTGAAACAATACT+CGG | - | chr1.4:53869839-53869858 | MS.gene029881:intron | 20.0% |
| !!! | TTAGTTTTTCAAGTAATTAG+GGG | + | chr1.4:53872006-53872025 | None:intergenic | 20.0% |
| ! | AAAGGCAATGAAGAAATAAA+TGG | - | chr1.4:53872851-53872870 | MS.gene029881:intron | 25.0% |
| ! | AAGAAATAAATGGAGAAGAA+GGG | - | chr1.4:53872861-53872880 | MS.gene029881:intron | 25.0% |
| ! | AATATGAGAATCAGAAGAAT+AGG | + | chr1.4:53871428-53871447 | None:intergenic | 25.0% |
| ! | AATTTCATCTAAAAAGCTTG+AGG | - | chr1.4:53871042-53871061 | MS.gene029881:intron | 25.0% |
| ! | ACTTAGCTATATAATCAGAT+AGG | - | chr1.4:53870371-53870390 | MS.gene029881:intron | 25.0% |
| ! | ATATAAAAAGTTGCATGCAT+AGG | - | chr1.4:53870014-53870033 | MS.gene029881:intron | 25.0% |
| ! | ATATGAGAATCAGAAGAATA+GGG | + | chr1.4:53871427-53871446 | None:intergenic | 25.0% |
| ! | CAAAAAACCATTGAAATCTA+TGG | - | chr1.4:53872771-53872790 | MS.gene029881:intron | 25.0% |
| ! | CTTCATCCTTTGATATTATA+AGG | - | chr1.4:53871133-53871152 | MS.gene029881:intron | 25.0% |
| ! | GATGAACAATATGTAAAACA+AGG | - | chr1.4:53869001-53869020 | MS.gene029881:intron | 25.0% |
| ! | GATGATTAACTCAGTTTAAA+TGG | + | chr1.4:53869287-53869306 | None:intergenic | 25.0% |
| ! | GTTTGACCTTATAATATCAA+AGG | + | chr1.4:53871142-53871161 | None:intergenic | 25.0% |
| ! | TAAAGAAGTTCTTATGAATG+AGG | - | chr1.4:53873407-53873426 | MS.gene029881:intron | 25.0% |
| ! | TATTCAGATTTGATAGAGAT+TGG | - | chr1.4:53868598-53868617 | MS.gene029881:intron | 25.0% |
| ! | TCACAGTTTCAAAGTTTATA+GGG | + | chr1.4:53870278-53870297 | None:intergenic | 25.0% |
| ! | TCCCATTGAGAATTAAATTA+GGG | - | chr1.4:53872464-53872483 | MS.gene029881:CDS | 25.0% |
| ! | TTACAATGGGATCAAAATTA+GGG | + | chr1.4:53871641-53871660 | None:intergenic | 25.0% |
| ! | TTCCTGTTAAGAAAATTTCT+TGG | + | chr1.4:53873198-53873217 | None:intergenic | 25.0% |
| ! | TTCTTAAAGGTTCAAAAGAA+TGG | - | chr1.4:53868818-53868837 | MS.gene029881:intron | 25.0% |
| ! | TTTCAGCTTATTTCGAATTA+GGG | + | chr1.4:53872414-53872433 | None:intergenic | 25.0% |
| !! | AAGAAGATTGAAGATTTTGT+TGG | - | chr1.4:53868621-53868640 | MS.gene029881:intron | 25.0% |
| !! | GCTTTTTAGATGAAATTCAA+AGG | + | chr1.4:53871039-53871058 | None:intergenic | 25.0% |
| !! | TTAAGTTGTGAAACAATACT+AGG | - | chr1.4:53869985-53870004 | MS.gene029881:intron | 25.0% |
| !! | TTTTCAGCTTATTTCGAATT+AGG | + | chr1.4:53872415-53872434 | None:intergenic | 25.0% |
| !!! | ATAAAAGGGTGTTTACATAT+AGG | - | chr1.4:53870537-53870556 | MS.gene029881:intron | 25.0% |
| !!! | ATAGACCAACACTTATTTTT+TGG | - | chr1.4:53872382-53872401 | MS.gene029881:intron | 25.0% |
| !!! | CATAGATTTCAATGGTTTTT+TGG | + | chr1.4:53872773-53872792 | None:intergenic | 25.0% |
| !!! | GAACCTTTAAGAAGTATTTT+TGG | + | chr1.4:53868811-53868830 | None:intergenic | 25.0% |
| !!! | TAAAAGGGTGTTTACATATA+GGG | - | chr1.4:53870538-53870557 | MS.gene029881:intron | 25.0% |
| !!! | TCTTTTCATTTTTACTTCTG+AGG | + | chr1.4:53872797-53872816 | None:intergenic | 25.0% |
| AACAAATTTCTACGGCAATT+TGG | + | chr1.4:53869309-53869328 | None:intergenic | 30.0% | |
| AACAATCTTCAAGGAAATGA+AGG | - | chr1.4:53869540-53869559 | MS.gene029881:intron | 30.0% | |
| AACTGGACAACAAATTTCTA+CGG | + | chr1.4:53869317-53869336 | None:intergenic | 30.0% | |
| AATCCCATTCTTGAGAATTA+GGG | + | chr1.4:53873124-53873143 | None:intergenic | 30.0% | |
| AATGGACGATTAATTACGTT+TGG | + | chr1.4:53869269-53869288 | None:intergenic | 30.0% | |
| AGAAGAATAGGGACATTATA+CGG | + | chr1.4:53871416-53871435 | None:intergenic | 30.0% | |
| AGCATCACTAACTCTATATT+CGG | + | chr1.4:53873378-53873397 | None:intergenic | 30.0% | |
| AGCCCTAATTTAATTCTCAA+TGG | + | chr1.4:53872469-53872488 | None:intergenic | 30.0% | |
| ATATTACCTACCAATGCAAT+GGG | + | chr1.4:53872176-53872195 | None:intergenic | 30.0% | |
| ATCATGGATATTTAGACATC+TGG | - | chr1.4:53869110-53869129 | MS.gene029881:intron | 30.0% | |
| ATTCATTCCAAGTTTCATTC+TGG | - | chr1.4:53871749-53871768 | MS.gene029881:CDS | 30.0% | |
| ATTGTGGCTAATGAATATCA+TGG | - | chr1.4:53869094-53869113 | MS.gene029881:intron | 30.0% | |
| CAAAAAACAGAAAAAACCTG+AGG | - | chr1.4:53870744-53870763 | MS.gene029881:intron | 30.0% | |
| CATTATACGGGTGAATAAAT+TGG | + | chr1.4:53871403-53871422 | None:intergenic | 30.0% | |
| CCACAAAAAGCAACAAAAAA+TGG | - | chr1.4:53868896-53868915 | MS.gene029881:intron | 30.0% | |
| CTCACAGTTTCAAAGTTTAT+AGG | + | chr1.4:53870279-53870298 | None:intergenic | 30.0% | |
| CTGATCCAAAAAATAAGTGT+TGG | + | chr1.4:53872390-53872409 | None:intergenic | 30.0% | |
| CTTACAATGGGATCAAAATT+AGG | + | chr1.4:53871642-53871661 | None:intergenic | 30.0% | |
| GAACTCTAATTCTAACTCAA+TGG | - | chr1.4:53868353-53868372 | MS.gene029881:CDS | 30.0% | |
| GAAGAAATAAATGGAGAAGA+AGG | - | chr1.4:53872860-53872879 | MS.gene029881:intron | 30.0% | |
| GATATAAGATTGAAGGTAGA+TGG | + | chr1.4:53868525-53868544 | None:intergenic | 30.0% | |
| GCCCTAATTTAATTCTCAAT+GGG | + | chr1.4:53872468-53872487 | None:intergenic | 30.0% | |
| GTCCCATTGAGAATTAAATT+AGG | - | chr1.4:53872463-53872482 | MS.gene029881:CDS | 30.0% | |
| GTGTTGAAGATACTAATACA+AGG | - | chr1.4:53869736-53869755 | MS.gene029881:intron | 30.0% | |
| TAAACACGCATAACGTTTAT+AGG | - | chr1.4:53872043-53872062 | MS.gene029881:intron | 30.0% | |
| TAATCCCATTCTTGAGAATT+AGG | + | chr1.4:53873125-53873144 | None:intergenic | 30.0% | |
| TATATTTGATGTTCTTGTGC+AGG | - | chr1.4:53871575-53871594 | MS.gene029881:intron | 30.0% | |
| TCATTCTGTCGATATTTAAC+AGG | - | chr1.4:53870162-53870181 | MS.gene029881:intron | 30.0% | |
| TGAGTTTATTGAAATCCTTG+AGG | - | chr1.4:53870060-53870079 | MS.gene029881:intron | 30.0% | |
| TGCCCAAAAATACTTCTTAA+AGG | - | chr1.4:53868805-53868824 | MS.gene029881:intron | 30.0% | |
| TTAACTAGGAAATCAAAACG+AGG | - | chr1.4:53871472-53871491 | MS.gene029881:intron | 30.0% | |
| TTAGAAACCAGAATGAAACT+TGG | + | chr1.4:53871759-53871778 | None:intergenic | 30.0% | |
| TTCTTGTGCATAACGTTTAT+AGG | + | chr1.4:53872120-53872139 | None:intergenic | 30.0% | |
| ! | ATTTTACAACTGTCTCTTAG+GGG | - | chr1.4:53871103-53871122 | MS.gene029881:intron | 30.0% |
| ! | CATGCAACTTTTTATATGTG+AGG | + | chr1.4:53870011-53870030 | None:intergenic | 30.0% |
| ! | CATTTTACAACTGTCTCTTA+GGG | - | chr1.4:53871102-53871121 | MS.gene029881:intron | 30.0% |
| ! | GTAAACACCCTTTTATTAGA+GGG | + | chr1.4:53870533-53870552 | None:intergenic | 30.0% |
| ! | GTCCAAGAAATTTTCTTAAC+AGG | - | chr1.4:53873193-53873212 | MS.gene029881:intron | 30.0% |
| ! | TGTAAACACCCTTTTATTAG+AGG | + | chr1.4:53870534-53870553 | None:intergenic | 30.0% |
| ! | TTAACTCTGGAGAAACTATT+AGG | - | chr1.4:53870993-53871012 | MS.gene029881:intron | 30.0% |
| !! | AAGTGTTGGTCTATTACAAA+AGG | + | chr1.4:53872376-53872395 | None:intergenic | 30.0% |
| !! | TGTTTGCTGTTATAACAGAT+GGG | + | chr1.4:53870659-53870678 | None:intergenic | 30.0% |
| !! | TGTTTTAAGCCTCTTAACAT+GGG | + | chr1.4:53871340-53871359 | None:intergenic | 30.0% |
| !! | TTTACTGATTTAGCTGACAT+TGG | - | chr1.4:53869681-53869700 | MS.gene029881:intron | 30.0% |
| !!! | CCATTTTTTGTTGCTTTTTG+TGG | + | chr1.4:53868899-53868918 | None:intergenic | 30.0% |
| !!! | GTTTGTTTTATGAATGGTGT+TGG | + | chr1.4:53870892-53870911 | None:intergenic | 30.0% |
| !!! | GTTTTTTTTTTCTGGTTTGC+TGG | + | chr1.4:53870690-53870709 | None:intergenic | 30.0% |
| !!! | TATCGGCTGTTTTTTTTTTC+TGG | + | chr1.4:53870698-53870717 | None:intergenic | 30.0% |
| !!! | TTGTTTTAAGCCTCTTAACA+TGG | + | chr1.4:53871341-53871360 | None:intergenic | 30.0% |
| !!! | TTTCAATGGTTTTTTGGAGT+TGG | + | chr1.4:53872767-53872786 | None:intergenic | 30.0% |
| !!! | TTTGTTGCTTTTTGTGGATA+AGG | + | chr1.4:53868893-53868912 | None:intergenic | 30.0% |
| !!! | TTTTTTCTGTTTTTTGCTGC+TGG | + | chr1.4:53870740-53870759 | None:intergenic | 30.0% |
| AAATAAATGGAGAAGAAGGG+AGG | - | chr1.4:53872864-53872883 | MS.gene029881:intron | 35.0% | |
| AAATTGGCTACAGCATACTT+TGG | + | chr1.4:53872706-53872725 | None:intergenic | 35.0% | |
| AATAAATGGAGAAGAAGGGA+GGG | - | chr1.4:53872865-53872884 | MS.gene029881:intron | 35.0% | |
| AATTGGCTACAGCATACTTT+GGG | + | chr1.4:53872705-53872724 | None:intergenic | 35.0% | |
| ACAACAACTACAACAACTAG+TGG | - | chr1.4:53868384-53868403 | MS.gene029881:CDS | 35.0% | |
| ACACTAATTCCCATGTTAAG+AGG | - | chr1.4:53871328-53871347 | MS.gene029881:intron | 35.0% | |
| ACCCTTTCCCTCTAATAAAA+GGG | - | chr1.4:53870523-53870542 | MS.gene029881:intron | 35.0% | |
| ACTATGGGAAGACTTACATT+GGG | + | chr1.4:53871819-53871838 | None:intergenic | 35.0% | |
| AGTGTTTAATCCCTTGACTA+TGG | - | chr1.4:53871870-53871889 | MS.gene029881:intron | 35.0% | |
| ATCTAAAAAGCTTGAGGAAG+GGG | - | chr1.4:53871048-53871067 | MS.gene029881:intron | 35.0% | |
| ATTCGCTAGTCATGATAAGT+AGG | + | chr1.4:53873314-53873333 | None:intergenic | 35.0% | |
| CATATTACCTACCAATGCAA+TGG | + | chr1.4:53872177-53872196 | None:intergenic | 35.0% | |
| CATCTAAAAAGCTTGAGGAA+GGG | - | chr1.4:53871047-53871066 | MS.gene029881:intron | 35.0% | |
| CATTCATAAAACAAACACGC+CGG | - | chr1.4:53870896-53870915 | MS.gene029881:intron | 35.0% | |
| CCTAAGAGACAGTTGTAAAA+TGG | + | chr1.4:53871104-53871123 | None:intergenic | 35.0% | |
| CCTAGTTAATGCAGAAAAGA+GGG | + | chr1.4:53871461-53871480 | None:intergenic | 35.0% | |
| CGTTGAACACTTGAAAATTG+TGG | - | chr1.4:53869190-53869209 | MS.gene029881:intron | 35.0% | |
| CTAGTTAATGCAGAAAAGAG+GGG | + | chr1.4:53871460-53871479 | None:intergenic | 35.0% | |
| CTAGTTGTTGTAGTTGTTGT+TGG | + | chr1.4:53868384-53868403 | None:intergenic | 35.0% | |
| GAAAATTGTGGCTAAGTACA+TGG | - | chr1.4:53869202-53869221 | MS.gene029881:intron | 35.0% | |
| GAAGAATAGGGACATTATAC+GGG | + | chr1.4:53871415-53871434 | None:intergenic | 35.0% | |
| GACATAGTAGATAACCTAGA+AGG | - | chr1.4:53872601-53872620 | MS.gene029881:intron | 35.0% | |
| GATGAACTCAACAATCTTCA+AGG | - | chr1.4:53869531-53869550 | MS.gene029881:intron | 35.0% | |
| GGTATGCATAATGCATGTTA+TGG | - | chr1.4:53869561-53869580 | MS.gene029881:intron | 35.0% | |
| GTGAGTTGTCTTGAGAATTA+GGG | + | chr1.4:53873088-53873107 | None:intergenic | 35.0% | |
| GTGAGTTGTCTTGAGATTTA+GGG | - | chr1.4:53872500-53872519 | MS.gene029881:CDS | 35.0% | |
| GTTTATTGAAATCCTTGAGG+TGG | - | chr1.4:53870063-53870082 | MS.gene029881:intron | 35.0% | |
| TATTACCTACCAATGCAATG+GGG | + | chr1.4:53872175-53872194 | None:intergenic | 35.0% | |
| TCATCTAAAAAGCTTGAGGA+AGG | - | chr1.4:53871046-53871065 | MS.gene029881:intron | 35.0% | |
| TCCTAGTTAATGCAGAAAAG+AGG | + | chr1.4:53871462-53871481 | None:intergenic | 35.0% | |
| TCGATATTTAACAGGTTTGC+CGG | - | chr1.4:53870170-53870189 | MS.gene029881:intron | 35.0% | |
| TGAGTTTATGGAAATCCTTG+AGG | - | chr1.4:53869910-53869929 | MS.gene029881:intron | 35.0% | |
| TGCATGTTGATGCTGTAAAT+TGG | + | chr1.4:53872722-53872741 | None:intergenic | 35.0% | |
| TTAGCTGACATTGGATCAAA+GGG | - | chr1.4:53869690-53869709 | MS.gene029881:intron | 35.0% | |
| TTGATGCCAATAGTCTAGAT+TGG | - | chr1.4:53869611-53869630 | MS.gene029881:intron | 35.0% | |
| TTTAGCTGACATTGGATCAA+AGG | - | chr1.4:53869689-53869708 | MS.gene029881:intron | 35.0% | |
| ! | ACCCTTTTATTAGAGGGAAA+GGG | + | chr1.4:53870527-53870546 | None:intergenic | 35.0% |
| ! | AGGCTCTTAAAGTGTCAATT+TGG | + | chr1.4:53871019-53871038 | None:intergenic | 35.0% |
| ! | CCATTTTACAACTGTCTCTT+AGG | - | chr1.4:53871101-53871120 | MS.gene029881:intron | 35.0% |
| ! | GTTTCTCCAGAGTTAATTTG+CGG | + | chr1.4:53870989-53871008 | None:intergenic | 35.0% |
| ! | GTTTTTGATCCGGATACAAA+CGG | - | chr1.4:53870225-53870244 | MS.gene029881:intron | 35.0% |
| ! | TGCATTGGTAGGTAATATGT+AGG | - | chr1.4:53872178-53872197 | MS.gene029881:CDS | 35.0% |
| !! | CTGTTTGCTGTTATAACAGA+TGG | + | chr1.4:53870660-53870679 | None:intergenic | 35.0% |
| !! | CTTGACTTGGTAATTGTGTA+AGG | + | chr1.4:53868441-53868460 | None:intergenic | 35.0% |
| !! | TGGCTCTAAAACAGTTATTC+AGG | - | chr1.4:53868641-53868660 | MS.gene029881:intron | 35.0% |
| !!! | CATTGGAAGTGTTTTTGATC+CGG | - | chr1.4:53870215-53870234 | MS.gene029881:intron | 35.0% |
| !!! | TTTGTGTCACTTACCAGTTT+TGG | - | chr1.4:53869404-53869423 | MS.gene029881:intron | 35.0% |
| AAACAGAAAAAACCTGAGGC+TGG | - | chr1.4:53870748-53870767 | MS.gene029881:intron | 40.0% | |
| AAATCTCAAGACAACTCACC+AGG | + | chr1.4:53872499-53872518 | None:intergenic | 40.0% | |
| AAATGTTAGCCGTCAACACT+CGG | - | chr1.4:53872432-53872451 | MS.gene029881:CDS | 40.0% | |
| AAATTAGGGCTAATCTGACC+TGG | - | chr1.4:53872478-53872497 | MS.gene029881:CDS | 40.0% | |
| AACAAAAACTCGCAATCAGC+AGG | - | chr1.4:53870600-53870619 | MS.gene029881:intron | 40.0% | |
| AATTCTCAAGACAACTCACC+AGG | - | chr1.4:53873089-53873108 | MS.gene029881:CDS | 40.0% | |
| ACAAAAACTCGCAATCAGCA+GGG | - | chr1.4:53870601-53870620 | MS.gene029881:intron | 40.0% | |
| ACAACTACAACAACTAGTGG+TGG | - | chr1.4:53868387-53868406 | MS.gene029881:CDS | 40.0% | |
| ACACAAAATCCCGTGATTCA+TGG | - | chr1.4:53869789-53869808 | MS.gene029881:intron | 40.0% | |
| ACTTCTCAAATACCAACGCA+AGG | - | chr1.4:53869765-53869784 | MS.gene029881:intron | 40.0% | |
| AGAAAAGAATCCCTTCCACT+GGG | - | chr1.4:53873170-53873189 | MS.gene029881:intron | 40.0% | |
| AGACGATTACCATGAATCAC+GGG | + | chr1.4:53869801-53869820 | None:intergenic | 40.0% | |
| AGCAAGTCACAAGTTAATGC+AGG | + | chr1.4:53871959-53871978 | None:intergenic | 40.0% | |
| AGCTAGCCAATCTAGACTAT+TGG | + | chr1.4:53869620-53869639 | None:intergenic | 40.0% | |
| AGCTCAGAGAGAACTTATAG+AGG | + | chr1.4:53872206-53872225 | None:intergenic | 40.0% | |
| AGTGTCATGTTGCTGCTAAA+GGG | + | chr1.4:53872825-53872844 | None:intergenic | 40.0% | |
| CAACATGACACTCTTGAGAA+AGG | - | chr1.4:53872833-53872852 | MS.gene029881:intron | 40.0% | |
| CACCCTTTCCCTCTAATAAA+AGG | - | chr1.4:53870522-53870541 | MS.gene029881:intron | 40.0% | |
| CAGAATGACAGACAAAACAG+TGG | + | chr1.4:53870150-53870169 | None:intergenic | 40.0% | |
| CAGACGATTACCATGAATCA+CGG | + | chr1.4:53869802-53869821 | None:intergenic | 40.0% | |
| CAGCAACTAGATTCAAACTC+AGG | + | chr1.4:53872143-53872162 | None:intergenic | 40.0% | |
| CAGCCCTAATTCTCAAGAAT+GGG | - | chr1.4:53873118-53873137 | MS.gene029881:CDS | 40.0% | |
| CATGCTGATGAATACTTGTC+AGG | - | chr1.4:53869509-53869528 | MS.gene029881:intron | 40.0% | |
| CCAAGACCTCGATTACAATT+AGG | - | chr1.4:53872904-53872923 | MS.gene029881:intron | 40.0% | |
| CCTAATTGTAATCGAGGTCT+TGG | + | chr1.4:53872907-53872926 | None:intergenic | 40.0% | |
| CTAGTCATCTGCTTCAATCT+CGG | - | chr1.4:53873345-53873364 | MS.gene029881:intron | 40.0% | |
| CTCAGTAGTTACTTCTGTTG+AGG | + | chr1.4:53870346-53870365 | None:intergenic | 40.0% | |
| CTGACAAGTATTCATCAGCA+TGG | + | chr1.4:53869511-53869530 | None:intergenic | 40.0% | |
| CTTCTCAAATACCAACGCAA+GGG | - | chr1.4:53869766-53869785 | MS.gene029881:intron | 40.0% | |
| CTTCTGCCTAATTGTAATCG+AGG | + | chr1.4:53872913-53872932 | None:intergenic | 40.0% | |
| CTTGAAATGCTATCTGTGCA+TGG | - | chr1.4:53871289-53871308 | MS.gene029881:intron | 40.0% | |
| GAAACAACTTTCTAGATGCG+AGG | + | chr1.4:53869865-53869884 | None:intergenic | 40.0% | |
| GACACAGTAGATAACCTAGA+AGG | + | chr1.4:53872987-53873006 | None:intergenic | 40.0% | |
| GACTATGGGAAGACTTACAT+TGG | + | chr1.4:53871820-53871839 | None:intergenic | 40.0% | |
| GAGACAAAACAAGAACCTAC+AGG | - | chr1.4:53870428-53870447 | MS.gene029881:intron | 40.0% | |
| GAGTTTATCATGCATCCTGT+AGG | + | chr1.4:53870446-53870465 | None:intergenic | 40.0% | |
| GAGTTTGAATCTAGTTGCTG+AGG | - | chr1.4:53872143-53872162 | MS.gene029881:intron | 40.0% | |
| GCAAGTCACAAGTTAATGCA+GGG | + | chr1.4:53871958-53871977 | None:intergenic | 40.0% | |
| GCGGCACAAAAAAATAAACG+AGG | + | chr1.4:53872664-53872683 | None:intergenic | 40.0% | |
| GCTGAAGTTTACGGTTTCAT+TGG | - | chr1.4:53870198-53870217 | MS.gene029881:intron | 40.0% | |
| GGAAAGGGTGGTTACATATA+GGG | + | chr1.4:53870512-53870531 | None:intergenic | 40.0% | |
| GGATTAAATCCACTGAGTGT+TGG | - | chr1.4:53873139-53873158 | MS.gene029881:CDS | 40.0% | |
| GGTCTCTTTCTGTCTGATAT+CGG | + | chr1.4:53870715-53870734 | None:intergenic | 40.0% | |
| GGTGAGTTGTCTTGAGAATT+AGG | + | chr1.4:53873089-53873108 | None:intergenic | 40.0% | |
| GGTGAGTTGTCTTGAGATTT+AGG | - | chr1.4:53872499-53872518 | MS.gene029881:CDS | 40.0% | |
| GTGCATGAACTTGAGAGATT+TGG | + | chr1.4:53871904-53871923 | None:intergenic | 40.0% | |
| GTTTATGGAAATCCTTGAGG+TGG | - | chr1.4:53869913-53869932 | MS.gene029881:intron | 40.0% | |
| TAAGTTCTCTCTGAGCTTTG+AGG | - | chr1.4:53872209-53872228 | MS.gene029881:CDS | 40.0% | |
| TACCAAAGCAGCTCCATTAA+CGG | - | chr1.4:53870846-53870865 | MS.gene029881:intron | 40.0% | |
| TAGCTGACATTGGATCAAAG+GGG | - | chr1.4:53869691-53869710 | MS.gene029881:intron | 40.0% | |
| TCAGCCCTAATTCTCAAGAA+TGG | - | chr1.4:53873117-53873136 | MS.gene029881:CDS | 40.0% | |
| TCTGCTTCAATCTCGGATTA+AGG | - | chr1.4:53873352-53873371 | MS.gene029881:intron | 40.0% | |
| TGCCAAACTGTCTTCACTAA+GGG | - | chr1.4:53871370-53871389 | MS.gene029881:intron | 40.0% | |
| TGGATGTTGAGTCGTATGAA+GGG | + | chr1.4:53870923-53870942 | None:intergenic | 40.0% | |
| TGTTTACATATAGGGACGGA+GGG | - | chr1.4:53870546-53870565 | MS.gene029881:intron | 40.0% | |
| TTACCAAGTCAAGAGAAAGC+TGG | - | chr1.4:53868448-53868467 | MS.gene029881:intron | 40.0% | |
| TTCAAGTAATTAGGGGCTTG+AGG | + | chr1.4:53871999-53872018 | None:intergenic | 40.0% | |
| TTGCCAAACTGTCTTCACTA+AGG | - | chr1.4:53871369-53871388 | MS.gene029881:intron | 40.0% | |
| TTGCTTCGTTGTTCAGAAGA+AGG | - | chr1.4:53873488-53873507 | MS.gene029881:CDS | 40.0% | |
| ! | AGGGTGTTTACATATAGGGA+CGG | - | chr1.4:53870542-53870561 | MS.gene029881:intron | 40.0% |
| ! | CAAGATCATTTTCCACCTCA+AGG | + | chr1.4:53869928-53869947 | None:intergenic | 40.0% |
| ! | CACCCTTTTATTAGAGGGAA+AGG | + | chr1.4:53870528-53870547 | None:intergenic | 40.0% |
| ! | CCCTCTTTTCTGCATTAACT+AGG | - | chr1.4:53871458-53871477 | MS.gene029881:intron | 40.0% |
| ! | CTTTTATTAGAGGGAAAGGG+TGG | + | chr1.4:53870524-53870543 | None:intergenic | 40.0% |
| ! | GATTGGCTAGCTGAACTTAA+AGG | - | chr1.4:53869628-53869647 | MS.gene029881:intron | 40.0% |
| ! | GCGTTGGTATTTGAGAAGTA+GGG | + | chr1.4:53869764-53869783 | None:intergenic | 40.0% |
| ! | GTGGGTTGTCTTGAGAATTA+GGG | - | chr1.4:53872536-53872555 | MS.gene029881:intron | 40.0% |
| ! | GTGGGTTGTCTTGAGAATTA+GGG | + | chr1.4:53872555-53872536 | None:intergenic | 40.0% |
| ! | TCTGAGGCCATAGATTTCAA+TGG | + | chr1.4:53872781-53872800 | None:intergenic | 40.0% |
| ! | TGCGTTGGTATTTGAGAAGT+AGG | + | chr1.4:53869765-53869784 | None:intergenic | 40.0% |
| ! | TTAATGGAGCTGCTTTGGTA+AGG | + | chr1.4:53870846-53870865 | None:intergenic | 40.0% |
| !! | AGAGTTAATTTGCGGAGTAG+CGG | + | chr1.4:53870981-53871000 | None:intergenic | 40.0% |
| !!! | ATCCATTGCTTTTGGCTCTT+CGG | - | chr1.4:53869440-53869459 | MS.gene029881:intron | 40.0% |
| !!! | CAATGGTTTTTTGGAGTTGG+AGG | + | chr1.4:53872764-53872783 | None:intergenic | 40.0% |
| !!! | CGGCGTGTTTGTTTTATGAA+TGG | + | chr1.4:53870898-53870917 | None:intergenic | 40.0% |
| !!! | CTGTTTCCTGCTGTTTTTTG+CGG | + | chr1.4:53870785-53870804 | None:intergenic | 40.0% |
| !!! | TTTTGGAGTTGGAGGCAAAT+TGG | + | chr1.4:53872756-53872775 | None:intergenic | 40.0% |
| AAAGCAATGGATGCTGGTAG+TGG | + | chr1.4:53869432-53869451 | None:intergenic | 45.0% | |
| AACTCTTGTCACTAAGCCGA+CGG | - | chr1.4:53871159-53871178 | MS.gene029881:intron | 45.0% | |
| AATCTGAGCTGGTTGTGTGA+TGG | - | chr1.4:53872561-53872580 | MS.gene029881:intron | 45.0% | |
| AATCTGAGCTGGTTGTGTGA+TGG | + | chr1.4:53872580-53872561 | None:intergenic | 45.0% | |
| AATTCTCAAGACAACCCACC+AGG | - | chr1.4:53873053-53873072 | MS.gene029881:CDS | 45.0% | |
| AATTCTCAAGACAACCCACC+AGG | + | chr1.4:53873072-53873053 | None:intergenic | 45.0% | |
| ACAGAACCGCAAAAAACAGC+AGG | - | chr1.4:53870776-53870795 | MS.gene029881:intron | 45.0% | |
| AGACCAGCTTTCTCTTGACT+TGG | + | chr1.4:53868454-53868473 | None:intergenic | 45.0% | |
| AGGGTGGTTACATATAGGGA+CGG | + | chr1.4:53870508-53870527 | None:intergenic | 45.0% | |
| AGTGAAGACAGTTTGGCAAG+TGG | + | chr1.4:53871368-53871387 | None:intergenic | 45.0% | |
| ATCCGTTAATGGAGCTGCTT+TGG | + | chr1.4:53870851-53870870 | None:intergenic | 45.0% | |
| ATCTGAGCTGGTTGTGTGAT+GGG | - | chr1.4:53872562-53872581 | MS.gene029881:intron | 45.0% | |
| ATCTGAGCTGGTTGTGTGAT+GGG | + | chr1.4:53872581-53872562 | None:intergenic | 45.0% | |
| CAAATACCCTTCTACCTGCA+GGG | - | chr1.4:53869463-53869482 | MS.gene029881:intron | 45.0% | |
| CAAGATCATTTGCCACCTCA+AGG | + | chr1.4:53870078-53870097 | None:intergenic | 45.0% | |
| CAGAAAAGAATCCCTTCCAC+TGG | - | chr1.4:53873169-53873188 | MS.gene029881:intron | 45.0% | |
| CAGCAGGGAACAATTACATC+AGG | - | chr1.4:53870616-53870635 | MS.gene029881:intron | 45.0% | |
| CCGGACTTTGCTGAAGTTTA+CGG | - | chr1.4:53870189-53870208 | MS.gene029881:intron | 45.0% | |
| CCGTAAACTTCAGCAAAGTC+CGG | + | chr1.4:53870192-53870211 | None:intergenic | 45.0% | |
| CCTAGAAGGCCGAATTTGAA+AGG | - | chr1.4:53872615-53872634 | MS.gene029881:intron | 45.0% | |
| CCTAGAAGGCCGAATTTGAA+AGG | + | chr1.4:53872634-53872615 | None:intergenic | 45.0% | |
| CCTTTCAAATTCGGCCTTCT+AGG | - | chr1.4:53872970-53872989 | MS.gene029881:intron | 45.0% | |
| CCTTTCAAATTCGGCCTTCT+AGG | + | chr1.4:53872989-53872970 | None:intergenic | 45.0% | |
| CTCCCTTAGTGAAGACAGTT+TGG | + | chr1.4:53871375-53871394 | None:intergenic | 45.0% | |
| GAAAAGAATCCCTTCCACTG+GGG | - | chr1.4:53873171-53873190 | MS.gene029881:intron | 45.0% | |
| GAAAATTTCTTGGACCCCAG+TGG | + | chr1.4:53873188-53873207 | None:intergenic | 45.0% | |
| GAATTAGGGCTAATCTGACC+TGG | + | chr1.4:53873074-53873093 | None:intergenic | 45.0% | |
| GAATTAGGGCTAATCTGAGC+TGG | - | chr1.4:53872550-53872569 | MS.gene029881:intron | 45.0% | |
| GAATTAGGGCTAATCTGAGC+TGG | + | chr1.4:53872569-53872550 | None:intergenic | 45.0% | |
| GAGTGTCATGTTGCTGCTAA+AGG | + | chr1.4:53872826-53872845 | None:intergenic | 45.0% | |
| GCTACTCCGCAAATTAACTC+TGG | - | chr1.4:53870980-53870999 | MS.gene029881:intron | 45.0% | |
| GGATGTTGAGTCGTATGAAG+GGG | + | chr1.4:53870922-53870941 | None:intergenic | 45.0% | |
| GGATTCAGAGCCATAGTCAA+GGG | + | chr1.4:53871883-53871902 | None:intergenic | 45.0% | |
| GGCAGAAGATCAAGAAACTG+AGG | + | chr1.4:53873293-53873312 | None:intergenic | 45.0% | |
| GGGAAAGGGTGGTTACATAT+AGG | + | chr1.4:53870513-53870532 | None:intergenic | 45.0% | |
| GTCGTCGTGCCTTTCAAATT+CGG | - | chr1.4:53872961-53872980 | MS.gene029881:intron | 45.0% | |
| GTGGATGTTGAGTCGTATGA+AGG | + | chr1.4:53870924-53870943 | None:intergenic | 45.0% | |
| GTGTTTACATATAGGGACGG+AGG | - | chr1.4:53870545-53870564 | MS.gene029881:intron | 45.0% | |
| GTTAATGCAGAAAAGAGGGG+AGG | + | chr1.4:53871457-53871476 | None:intergenic | 45.0% | |
| TGAATCTAGTTGCTGAGGAG+AGG | - | chr1.4:53872148-53872167 | MS.gene029881:intron | 45.0% | |
| TGGAGATGCTTCTGGTAAGA+AGG | - | chr1.4:53868407-53868426 | MS.gene029881:CDS | 45.0% | |
| TGGATTCAGAGCCATAGTCA+AGG | + | chr1.4:53871884-53871903 | None:intergenic | 45.0% | |
| TGGTTACATATAGGGACGGA+GGG | + | chr1.4:53870504-53870523 | None:intergenic | 45.0% | |
| TGTGCAGAAGCTGAAGGAAA+TGG | - | chr1.4:53870251-53870270 | MS.gene029881:intron | 45.0% | |
| TTTCCTTCAGCTTCTGCACA+TGG | + | chr1.4:53870251-53870270 | None:intergenic | 45.0% | |
| ! | AGCAGCTCCATTAACGGATA+AGG | - | chr1.4:53870852-53870871 | MS.gene029881:intron | 45.0% |
| ! | ATTTGAAAGGCACGACGACA+TGG | + | chr1.4:53872960-53872979 | None:intergenic | 45.0% |
| ! | CTACCAGCATCCATTGCTTT+TGG | - | chr1.4:53869432-53869451 | MS.gene029881:intron | 45.0% |
| ! | GATTTAGGGCTAATCTGACC+TGG | - | chr1.4:53872514-53872533 | MS.gene029881:CDS | 45.0% |
| ! | GGATGAATAGCTTTGCGCTT+AGG | + | chr1.4:53868872-53868891 | None:intergenic | 45.0% |
| ! | TGGGAGCCTATTGATTACAG+CGG | + | chr1.4:53872686-53872705 | None:intergenic | 45.0% |
| ! | TTGTGTGATGGGAGAGTCAT+GGG | - | chr1.4:53872573-53872592 | MS.gene029881:intron | 45.0% |
| ! | TTGTGTGATGGGAGAGTCAT+GGG | + | chr1.4:53872592-53872573 | None:intergenic | 45.0% |
| !! | AGGCGATTAAGGTTTTGTCG+TGG | + | chr1.4:53870949-53870968 | None:intergenic | 45.0% |
| !! | CGATTAAGGTTTTGTCGTGG+AGG | + | chr1.4:53870946-53870965 | None:intergenic | 45.0% |
| !! | CTAAATCCACCGAGTGTTGA+CGG | + | chr1.4:53872444-53872463 | None:intergenic | 45.0% |
| !! | GGTGGGTTGTCTTGAGAATT+AGG | - | chr1.4:53872535-53872554 | MS.gene029881:intron | 45.0% |
| !! | GGTGGGTTGTCTTGAGAATT+AGG | + | chr1.4:53872554-53872535 | None:intergenic | 45.0% |
| !! | TTAAGGTTTTGTCGTGGAGG+TGG | + | chr1.4:53870943-53870962 | None:intergenic | 45.0% |
| !!! | TTCTGTTTTTTGCTGCTGGC+TGG | + | chr1.4:53870736-53870755 | None:intergenic | 45.0% |
| !! | TTAAATTATTCTTTAATAAA+AGG | - | chr1.4:53873238-53873257 | MS.gene029881:intron | 5.0% |
| !! | TTTATTAAAGAATAATTTAA+TGG | + | chr1.4:53873238-53873257 | None:intergenic | 5.0% |
| AAAAACTGCCCATGAGCCGT+CGG | + | chr1.4:53871178-53871197 | None:intergenic | 50.0% | |
| AATGGAGAAGAAGGGAGGGA+AGG | - | chr1.4:53872869-53872888 | MS.gene029881:intron | 50.0% | |
| AGTCCCAGGGTTACTAGGAT+CGG | + | chr1.4:53872241-53872260 | None:intergenic | 50.0% | |
| AGTTGAGTCCCAGGGTTACT+AGG | + | chr1.4:53872246-53872265 | None:intergenic | 50.0% | |
| AGTTGGAGGCAAATTGGCGT+TGG | + | chr1.4:53872750-53872769 | None:intergenic | 50.0% | |
| ATCAGCAACAGCGGTCTTAG+TGG | - | chr1.4:53869714-53869733 | MS.gene029881:intron | 50.0% | |
| ATTTCTTGGACCCCAGTGGA+AGG | + | chr1.4:53873184-53873203 | None:intergenic | 50.0% | |
| GAATTAGGGCTGATCTGACC+TGG | + | chr1.4:53873110-53873129 | None:intergenic | 50.0% | |
| GACATACCCTGCAGGTAGAA+GGG | + | chr1.4:53869472-53869491 | None:intergenic | 50.0% | |
| GAGCCAAAAGCAATGGATGC+TGG | + | chr1.4:53869438-53869457 | None:intergenic | 50.0% | |
| GCAAATACCCTTCTACCTGC+AGG | - | chr1.4:53869462-53869481 | MS.gene029881:intron | 50.0% | |
| GGAGTTAGTGGAGGCGATTA+AGG | + | chr1.4:53870960-53870979 | None:intergenic | 50.0% | |
| GTGGTTACATATAGGGACGG+AGG | + | chr1.4:53870505-53870524 | None:intergenic | 50.0% | |
| GTTCTGTATATGCCAGCCTC+AGG | + | chr1.4:53870763-53870782 | None:intergenic | 50.0% | |
| TAGGGCTAATCTGACCTGGT+GGG | - | chr1.4:53872482-53872501 | MS.gene029881:CDS | 50.0% | |
| TAGGGCTAATCTGACCTGGT+GGG | + | chr1.4:53872501-53872482 | None:intergenic | 50.0% | |
| TCAAAGGGGATCAGCAACAG+CGG | - | chr1.4:53869705-53869724 | MS.gene029881:intron | 50.0% | |
| TCATGGTAATCGTCTGCGAC+AGG | - | chr1.4:53869806-53869825 | MS.gene029881:intron | 50.0% | |
| TCTCCGATCCTAGTAACCCT+GGG | - | chr1.4:53872235-53872254 | MS.gene029881:CDS | 50.0% | |
| TGACATACCCTGCAGGTAGA+AGG | + | chr1.4:53869473-53869492 | None:intergenic | 50.0% | |
| TGCACATGGCCGTTTGTATC+CGG | + | chr1.4:53870237-53870256 | None:intergenic | 50.0% | |
| TGCCGAAGAGCCAAAAGCAA+TGG | + | chr1.4:53869445-53869464 | None:intergenic | 50.0% | |
| TGTTAGCAGCCAACACTCAG+TGG | + | chr1.4:53873151-53873170 | None:intergenic | 50.0% | |
| TTAGGGCTAATCTGACCTGG+TGG | - | chr1.4:53872481-53872500 | MS.gene029881:CDS | 50.0% | |
| TTAGGGCTAATCTGACCTGG+TGG | + | chr1.4:53872500-53872481 | None:intergenic | 50.0% | |
| TTCTCCGATCCTAGTAACCC+TGG | - | chr1.4:53872234-53872253 | MS.gene029881:CDS | 50.0% | |
| TTTCTTGGACCCCAGTGGAA+GGG | + | chr1.4:53873183-53873202 | None:intergenic | 50.0% | |
| ! | ACTAGTGGTGGAGATGCTTC+TGG | - | chr1.4:53868399-53868418 | MS.gene029881:CDS | 50.0% |
| ! | ATAGCTTTGCGCTTAGGACG+AGG | + | chr1.4:53868866-53868885 | None:intergenic | 50.0% |
| ! | ATGGAGCTGCTTTGGTAAGG+CGG | + | chr1.4:53870843-53870862 | None:intergenic | 50.0% |
| ! | GAGCCTATTGATTACAGCGG+CGG | + | chr1.4:53872683-53872702 | None:intergenic | 50.0% |
| ! | GGATTTTGTGTCCCTTGCGT+TGG | + | chr1.4:53869780-53869799 | None:intergenic | 50.0% |
| ! | GGCTAGACAAGTTGACAGTG+AGG | + | chr1.4:53871620-53871639 | None:intergenic | 50.0% |
| ! | GTTGTGTGATGGGAGAGTCA+TGG | - | chr1.4:53872572-53872591 | MS.gene029881:intron | 50.0% |
| ! | GTTGTGTGATGGGAGAGTCA+TGG | + | chr1.4:53872591-53872572 | None:intergenic | 50.0% |
| ! | TAACGGATAAGGCACCCTCT+CGG | - | chr1.4:53870863-53870882 | MS.gene029881:intron | 50.0% |
| !! | AATGGTGTTGGTGTCCGAGA+GGG | + | chr1.4:53870880-53870899 | None:intergenic | 50.0% |
| !! | AGGCAGAAGCACTCACGAAA+AGG | - | chr1.4:53872924-53872943 | MS.gene029881:intron | 50.0% |
| !! | GAGGGTGCCTTATCCGTTAA+TGG | + | chr1.4:53870862-53870881 | None:intergenic | 50.0% |
| !! | TTTTCGCGAGTTGAGTCCCA+GGG | + | chr1.4:53872254-53872273 | None:intergenic | 50.0% |
| ACCTGCAGGGTATGTCACGT+GGG | - | chr1.4:53869476-53869495 | MS.gene029881:intron | 55.0% | |
| AGGAGAGGACCCCATTGCAT+TGG | - | chr1.4:53872163-53872182 | MS.gene029881:CDS | 55.0% | |
| CTTTGGTAAGGCGGAGGTTG+AGG | + | chr1.4:53870834-53870853 | None:intergenic | 55.0% | |
| GGCGTCGCGCCTTTCAAATT+CGG | + | chr1.4:53872627-53872646 | None:intergenic | 55.0% | |
| GTGCCGCCGCTGTAATCAAT+AGG | - | chr1.4:53872677-53872696 | MS.gene029881:intron | 55.0% | |
| GTTGAGTCGTATGAAGGGGC+CGG | + | chr1.4:53870918-53870937 | None:intergenic | 55.0% | |
| TACCTGCAGGGTATGTCACG+TGG | - | chr1.4:53869475-53869494 | MS.gene029881:intron | 55.0% | |
| TCACTAAGCCGACGGCTCAT+GGG | - | chr1.4:53871167-53871186 | MS.gene029881:intron | 55.0% | |
| TGTTAGCCGTCAACACTCGG+TGG | - | chr1.4:53872435-53872454 | MS.gene029881:CDS | 55.0% | |
| ! | GAGGACCCCATTGCATTGGT+AGG | - | chr1.4:53872167-53872186 | MS.gene029881:CDS | 55.0% |
| ! | TTGCGGAGTAGCGGAGTTAG+TGG | + | chr1.4:53870972-53870991 | None:intergenic | 55.0% |
| !! | GAATGGTGTTGGTGTCCGAG+AGG | + | chr1.4:53870881-53870900 | None:intergenic | 55.0% |
| !! | GCTGGTAGTGGCACCAAAAC+TGG | + | chr1.4:53869420-53869439 | None:intergenic | 55.0% |
| !! | GTTTTCGCGAGTTGAGTCCC+AGG | + | chr1.4:53872255-53872274 | None:intergenic | 55.0% |
| CGGCCATGTGCAGAAGCTGA+AGG | - | chr1.4:53870245-53870264 | MS.gene029881:intron | 60.0% | |
| GAGGTTGAGGCTGGGGTATG+CGG | + | chr1.4:53870821-53870840 | None:intergenic | 60.0% | |
| GCTTTGCGCTTAGGACGAGG+AGG | + | chr1.4:53868863-53868882 | None:intergenic | 60.0% | |
| GGAGAAGAAGGGAGGGAAGG+AGG | - | chr1.4:53872872-53872891 | MS.gene029881:intron | 60.0% | |
| GTAAGGCGGAGGTTGAGGCT+GGG | + | chr1.4:53870829-53870848 | None:intergenic | 60.0% | |
| GTCACTAAGCCGACGGCTCA+TGG | - | chr1.4:53871166-53871185 | MS.gene029881:intron | 60.0% | |
| TAAGGCGGAGGTTGAGGCTG+GGG | + | chr1.4:53870828-53870847 | None:intergenic | 60.0% | |
| TCCCACGTGACATACCCTGC+AGG | + | chr1.4:53869480-53869499 | None:intergenic | 60.0% | |
| TGCGCTTAGGACGAGGAGGA+GGG | + | chr1.4:53868859-53868878 | None:intergenic | 60.0% | |
| TTGCGCTTAGGACGAGGAGG+AGG | + | chr1.4:53868860-53868879 | None:intergenic | 60.0% | |
| ! | CGGAGTAGCGGAGTTAGTGG+AGG | + | chr1.4:53870969-53870988 | None:intergenic | 60.0% |
| ! | GAGCTGCTTTGGTAAGGCGG+AGG | + | chr1.4:53870840-53870859 | None:intergenic | 60.0% |
| GGTAAGGCGGAGGTTGAGGC+TGG | + | chr1.4:53870830-53870849 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 53868351 | 53873608 | 53868351 | ID=MS.gene029881 |
| chr1.4 | mRNA | 53868351 | 53873608 | 53868351 | ID=MS.gene029881.t1;Parent=MS.gene029881 |
| chr1.4 | exon | 53873448 | 53873608 | 53873448 | ID=MS.gene029881.t1.exon1;Parent=MS.gene029881.t1 |
| chr1.4 | CDS | 53873448 | 53873608 | 53873448 | ID=cds.MS.gene029881.t1;Parent=MS.gene029881.t1 |
| chr1.4 | exon | 53873297 | 53873354 | 53873297 | ID=MS.gene029881.t1.exon2;Parent=MS.gene029881.t1 |
| chr1.4 | CDS | 53873297 | 53873354 | 53873297 | ID=cds.MS.gene029881.t1;Parent=MS.gene029881.t1 |
| chr1.4 | exon | 53873042 | 53873165 | 53873042 | ID=MS.gene029881.t1.exon3;Parent=MS.gene029881.t1 |
| chr1.4 | CDS | 53873042 | 53873165 | 53873042 | ID=cds.MS.gene029881.t1;Parent=MS.gene029881.t1 |
| chr1.4 | exon | 53872398 | 53872538 | 53872398 | ID=MS.gene029881.t1.exon4;Parent=MS.gene029881.t1 |
| chr1.4 | CDS | 53872398 | 53872538 | 53872398 | ID=cds.MS.gene029881.t1;Parent=MS.gene029881.t1 |
| chr1.4 | exon | 53872149 | 53872265 | 53872149 | ID=MS.gene029881.t1.exon5;Parent=MS.gene029881.t1 |
| chr1.4 | CDS | 53872149 | 53872265 | 53872149 | ID=cds.MS.gene029881.t1;Parent=MS.gene029881.t1 |
| chr1.4 | exon | 53871666 | 53871775 | 53871666 | ID=MS.gene029881.t1.exon6;Parent=MS.gene029881.t1 |
| chr1.4 | CDS | 53871666 | 53871775 | 53871666 | ID=cds.MS.gene029881.t1;Parent=MS.gene029881.t1 |
| chr1.4 | exon | 53870303 | 53870362 | 53870303 | ID=MS.gene029881.t1.exon7;Parent=MS.gene029881.t1 |
| chr1.4 | CDS | 53870303 | 53870362 | 53870303 | ID=cds.MS.gene029881.t1;Parent=MS.gene029881.t1 |
| chr1.4 | exon | 53868351 | 53868455 | 53868351 | ID=MS.gene029881.t1.exon8;Parent=MS.gene029881.t1 |
| chr1.4 | CDS | 53868351 | 53868455 | 53868351 | ID=cds.MS.gene029881.t1;Parent=MS.gene029881.t1 |
| Gene Sequence |
| Protein sequence |
