Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030093.t1 | XP_003612426.2 | 67.4 | 561 | 50 | 6 | 1 | 449 | 1 | 540 | 5.20E-186 | 661.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030093.t1 | Q940Y3 | 46.2 | 403 | 174 | 10 | 67 | 449 | 343 | 722 | 9.5e-80 | 299.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030093.t1 | G7K2M1 | 67.4 | 561 | 50 | 6 | 1 | 449 | 1 | 540 | 3.7e-186 | 661.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene030093.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030093.t1 | MTR_5g024920 | 88.535 | 314 | 21 | 1 | 148 | 461 | 329 | 627 | 0.0 | 575 |
| MS.gene030093.t1 | MTR_5g024920 | 70.035 | 287 | 14 | 3 | 449 | 699 | 366 | 616 | 7.67e-125 | 387 |
| MS.gene030093.t1 | MTR_5g024920 | 80.690 | 145 | 13 | 3 | 13 | 148 | 88 | 226 | 5.85e-58 | 209 |
| MS.gene030093.t1 | MTR_5g024920 | 91.060 | 302 | 12 | 1 | 148 | 449 | 254 | 540 | 0.0 | 569 |
| MS.gene030093.t1 | MTR_5g024920 | 70.035 | 287 | 14 | 3 | 449 | 699 | 291 | 541 | 1.85e-125 | 388 |
| MS.gene030093.t1 | MTR_5g024920 | 79.618 | 157 | 17 | 3 | 1 | 148 | 1 | 151 | 3.22e-64 | 225 |
| MS.gene030093.t1 | MTR_3g116200 | 48.703 | 347 | 125 | 9 | 116 | 452 | 7 | 310 | 2.90e-85 | 273 |
| MS.gene030093.t1 | MTR_3g116200 | 43.509 | 285 | 80 | 5 | 456 | 698 | 62 | 307 | 2.91e-60 | 206 |
| MS.gene030093.t1 | MTR_3g116200 | 49.128 | 344 | 122 | 9 | 116 | 449 | 7 | 307 | 4.26e-84 | 272 |
| MS.gene030093.t1 | MTR_3g116200 | 43.706 | 286 | 80 | 5 | 456 | 699 | 62 | 308 | 4.27e-60 | 207 |
| MS.gene030093.t1 | MTR_1g033910 | 68.421 | 76 | 11 | 2 | 1 | 69 | 1 | 70 | 1.77e-23 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030093.t1 | AT2G17410 | 61.597 | 263 | 74 | 4 | 188 | 449 | 480 | 716 | 1.42e-95 | 315 |
| MS.gene030093.t1 | AT2G17410 | 46.575 | 292 | 74 | 6 | 444 | 699 | 472 | 717 | 5.74e-71 | 248 |
| MS.gene030093.t1 | AT2G17410 | 60.755 | 265 | 79 | 4 | 188 | 449 | 480 | 722 | 1.77e-95 | 314 |
| MS.gene030093.t1 | AT2G17410 | 46.758 | 293 | 78 | 7 | 444 | 699 | 472 | 723 | 4.19e-70 | 246 |
| MS.gene030093.t1 | AT2G17410 | 60.755 | 265 | 79 | 4 | 188 | 449 | 480 | 722 | 1.77e-95 | 314 |
| MS.gene030093.t1 | AT2G17410 | 46.758 | 293 | 78 | 7 | 444 | 699 | 472 | 723 | 4.19e-70 | 246 |
| MS.gene030093.t1 | AT1G76510 | 53.516 | 256 | 94 | 4 | 199 | 449 | 137 | 372 | 2.33e-76 | 253 |
| MS.gene030093.t1 | AT1G76510 | 41.767 | 249 | 121 | 5 | 463 | 699 | 137 | 373 | 1.38e-50 | 183 |
| MS.gene030093.t1 | AT1G76510 | 53.516 | 256 | 94 | 4 | 199 | 449 | 137 | 372 | 2.33e-76 | 253 |
| MS.gene030093.t1 | AT1G76510 | 41.767 | 249 | 121 | 5 | 463 | 699 | 137 | 373 | 1.38e-50 | 183 |
| MS.gene030093.t1 | AT1G76510 | 53.516 | 256 | 94 | 4 | 199 | 449 | 137 | 372 | 2.33e-76 | 253 |
| MS.gene030093.t1 | AT1G76510 | 41.767 | 249 | 121 | 5 | 463 | 699 | 137 | 373 | 1.38e-50 | 183 |
| MS.gene030093.t1 | AT1G20910 | 51.172 | 256 | 100 | 4 | 199 | 449 | 101 | 336 | 1.92e-71 | 239 |
| MS.gene030093.t1 | AT1G20910 | 40.408 | 245 | 130 | 4 | 463 | 699 | 101 | 337 | 2.07e-47 | 173 |
| MS.gene030093.t1 | AT1G20910 | 51.172 | 256 | 100 | 4 | 199 | 449 | 101 | 336 | 2.33e-71 | 239 |
| MS.gene030093.t1 | AT1G20910 | 40.408 | 245 | 130 | 4 | 463 | 699 | 101 | 337 | 2.65e-47 | 173 |
| MS.gene030093.t1 | AT1G76510 | 49.104 | 279 | 94 | 5 | 199 | 449 | 137 | 395 | 1.14e-70 | 240 |
| MS.gene030093.t1 | AT1G76510 | 38.235 | 272 | 121 | 6 | 463 | 699 | 137 | 396 | 5.52e-45 | 169 |
Find 191 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCCATTCTCCATAAAATT+TGG | 0.109421 | 5.2:-77959224 | None:intergenic |
| AAGCCATTCTCCATAAAATT+TGG | 0.116651 | 5.2:-77963802 | None:intergenic |
| AATCTTGCTGGTTTGGAATT+AGG | 0.186518 | 5.2:+77958674 | MS.gene030093:CDS |
| TTCCACCAAACCTTTATAAT+AGG | 0.195321 | 5.2:-77962462 | None:intergenic |
| CCACAGTTTCCTGGACTTTC+CGG | 0.219944 | 5.2:+77965647 | MS.gene030093:CDS |
| CCACAGTTTCCTGGACTTTC+CGG | 0.221520 | 5.2:+77961080 | MS.gene030093:CDS |
| AGGAGCTTGAAAACTTCTTT+AGG | 0.247131 | 5.2:+77959176 | MS.gene030093:CDS |
| AGGAGCTTGAAAACTTCTTT+AGG | 0.247131 | 5.2:+77963754 | MS.gene030093:CDS |
| GTGTCAGATGATGTTAAAAT+TGG | 0.259184 | 5.2:+77958785 | MS.gene030093:CDS |
| TACTTCCTCCTTCTTCTTCT+CGG | 0.270300 | 5.2:-77967524 | None:intergenic |
| AACATGTTCTGCTGCGAATC+CGG | 0.285848 | 5.2:-77959082 | None:intergenic |
| GAAATATATGCTTTAGTTCC+TGG | 0.296044 | 5.2:+77963175 | MS.gene030093:CDS |
| GAAATATATGCTTTAGTTCC+TGG | 0.296044 | 5.2:+77967474 | MS.gene030093:CDS |
| GGACTTGCACCACAGTTTCC+TGG | 0.301953 | 5.2:+77965638 | MS.gene030093:intron |
| ACGTAAGAGCCCATCTTATA+TGG | 0.307472 | 5.2:+77962726 | MS.gene030093:CDS |
| ACGTAAGAGCCCATCTTATA+TGG | 0.307472 | 5.2:+77967023 | MS.gene030093:CDS |
| TGGCACTCACAACGTCTTCT+TGG | 0.307906 | 5.2:+77962420 | MS.gene030093:CDS |
| GTTGTAGATCCTCGTTGTTC+TGG | 0.314171 | 5.2:-77968579 | None:intergenic |
| TACGAAAGGCATAACATAAA+AGG | 0.323371 | 5.2:+77961415 | MS.gene030093:CDS |
| TATGAAAGGCATAACATAAA+AGG | 0.325509 | 5.2:+77965984 | MS.gene030093:CDS |
| TATTGATAATCTTGCTGGTT+TGG | 0.333193 | 5.2:+77958667 | MS.gene030093:CDS |
| TCCACCAAACCTTTATAATA+GGG | 0.338104 | 5.2:-77962461 | None:intergenic |
| GCCTGTGAATGTTGAAAATC+AGG | 0.345539 | 5.2:+77961474 | MS.gene030093:CDS |
| GCCTGTGAATGTTGAAAATC+AGG | 0.345539 | 5.2:+77966043 | MS.gene030093:CDS |
| GGAGCTTGAAAACTTCTTTA+GGG | 0.352045 | 5.2:+77959177 | MS.gene030093:CDS |
| GGAGCTTGAAAACTTCTTTA+GGG | 0.352045 | 5.2:+77963755 | MS.gene030093:CDS |
| AGCCATTCTCCATAAAATTT+GGG | 0.353493 | 5.2:-77959223 | None:intergenic |
| AGCCATTCTCCATAAAATTT+GGG | 0.353903 | 5.2:-77963801 | None:intergenic |
| ATTCCTGTCCTTGTATCATC+AGG | 0.357516 | 5.2:-77958989 | None:intergenic |
| TAAGATGGGCTCTTACGTTT+AGG | 0.359154 | 5.2:-77962721 | None:intergenic |
| TAAGATGGGCTCTTACGTTT+AGG | 0.359154 | 5.2:-77967018 | None:intergenic |
| GGACATGCACCACAGTTTCC+TGG | 0.366165 | 5.2:+77961071 | MS.gene030093:intron |
| CATAGGACCTTCTGCTGATT+GGG | 0.368858 | 5.2:+77963032 | MS.gene030093:CDS |
| CATAGGACCTTCTGCTGATT+GGG | 0.368858 | 5.2:+77967331 | MS.gene030093:CDS |
| CATAGGACCTTCTGCTGATT+GGG | 0.373243 | 5.2:+77962987 | MS.gene030093:CDS |
| CATAGGACCTTCTGCTGATT+GGG | 0.373243 | 5.2:+77967286 | MS.gene030093:CDS |
| CAAAGTGGGTCAGGGTGTTC+CGG | 0.378330 | 5.2:+77958565 | MS.gene030093:CDS |
| ACATAGGACCTTCTGCTGAT+TGG | 0.380929 | 5.2:+77962986 | MS.gene030093:CDS |
| ACATAGGACCTTCTGCTGAT+TGG | 0.380929 | 5.2:+77963031 | MS.gene030093:CDS |
| ACATAGGACCTTCTGCTGAT+TGG | 0.380929 | 5.2:+77967285 | MS.gene030093:CDS |
| ACATAGGACCTTCTGCTGAT+TGG | 0.380929 | 5.2:+77967330 | MS.gene030093:CDS |
| TTGGCACTTGTTCAATTCAA+TGG | 0.384505 | 5.2:+77968554 | MS.gene030093:CDS |
| GAAGTTTCCTCTACAGTAAC+CGG | 0.388879 | 5.2:-77958746 | None:intergenic |
| ATGATTATTGATAATCTTGC+TGG | 0.390384 | 5.2:+77958662 | MS.gene030093:CDS |
| AGCTAGTGACCCTATTATAA+AGG | 0.397531 | 5.2:+77962452 | MS.gene030093:CDS |
| TTGTACAATTAGCGCTATCA+TGG | 0.397765 | 5.2:+77968948 | MS.gene030093:intron |
| CCGGAGATATGCTGCTGAAC+AGG | 0.399445 | 5.2:+77962386 | MS.gene030093:CDS |
| TGCTGCTGAACAGGCTATGC+GGG | 0.403913 | 5.2:+77962395 | MS.gene030093:CDS |
| GTTCTCCATCTGAAGACTAT+TGG | 0.408638 | 5.2:+77968488 | MS.gene030093:intron |
| ACAAGTGCCAATGCAATAGA+AGG | 0.416642 | 5.2:-77968542 | None:intergenic |
| ACTGCATTATCCATATAAGA+TGG | 0.421547 | 5.2:-77962736 | None:intergenic |
| ACTGCATTATCCATATAAGA+TGG | 0.421547 | 5.2:-77967033 | None:intergenic |
| ACCTCCTCCCGCAGAAGGCC+AGG | 0.422953 | 5.2:-77967492 | None:intergenic |
| AGAAAACGACAAAGTGGGTC+AGG | 0.425358 | 5.2:+77958556 | MS.gene030093:CDS |
| ACCTCCTCCCGCAGAAGGCC+AGG | 0.425504 | 5.2:-77963193 | None:intergenic |
| AAACTTTCCTTCTATTGCAT+TGG | 0.426294 | 5.2:+77968535 | MS.gene030093:CDS |
| TCACAACGTCTTCTTGGAAA+TGG | 0.433012 | 5.2:+77962426 | MS.gene030093:CDS |
| CTGAACAGGCTATGCGGGGT+TGG | 0.442024 | 5.2:+77962400 | MS.gene030093:CDS |
| TTGGGTATATGTGGATGATA+TGG | 0.442155 | 5.2:+77967304 | MS.gene030093:CDS |
| TGTGTCTAGGGTTTAGCATC+AGG | 0.444410 | 5.2:+77962357 | MS.gene030093:intron |
| TGTTCAAGATACCCTTCATT+CGG | 0.446726 | 5.2:+77958880 | MS.gene030093:CDS |
| ATACCTTCTGAAACAACCTT+GGG | 0.449374 | 5.2:-77958845 | None:intergenic |
| GATGCTGATCATTATTATGA+TGG | 0.450037 | 5.2:+77959112 | MS.gene030093:CDS |
| ATGGAGAGCTGTGATGAGAT+TGG | 0.450926 | 5.2:+77959372 | MS.gene030093:CDS |
| ATGGAGAGCTGTGATGAGAT+TGG | 0.450926 | 5.2:+77963950 | MS.gene030093:CDS |
| CCTGTTCAGCAGCATATCTC+CGG | 0.454295 | 5.2:-77962386 | None:intergenic |
| ACATGTTCTGCTGCGAATCC+GGG | 0.460181 | 5.2:-77959081 | None:intergenic |
| TTTAGTTCCTGGCCTTCTGC+GGG | 0.466389 | 5.2:+77963186 | MS.gene030093:CDS |
| TTTAGTTCCTGGCCTTCTGC+GGG | 0.466389 | 5.2:+77967485 | MS.gene030093:CDS |
| GATGCTGGTCATTATTATGA+TGG | 0.472401 | 5.2:+77963690 | MS.gene030093:CDS |
| TCACCTTCTCATAAAATGTC+CGG | 0.477569 | 5.2:-77961099 | None:intergenic |
| TCCTGGCCTTCTGCGGGAGG+AGG | 0.479319 | 5.2:+77963192 | MS.gene030093:CDS |
| TCCTGGCCTTCTGCGGGAGG+AGG | 0.479319 | 5.2:+77967491 | MS.gene030093:CDS |
| TTAGAAGTTGAAAGTAAGGA+TGG | 0.483513 | 5.2:+77959022 | MS.gene030093:CDS |
| TGTCTTAACTGTGGTCTTGA+CGG | 0.484727 | 5.2:-77962778 | None:intergenic |
| TGTCTTAACTGTGGTCTTGA+CGG | 0.484727 | 5.2:-77967075 | None:intergenic |
| TTCTGCTGATTGGGTATATG+TGG | 0.487210 | 5.2:+77962996 | MS.gene030093:CDS |
| TTCTGCTGATTGGGTATATG+TGG | 0.487210 | 5.2:+77967295 | MS.gene030093:CDS |
| GATGCATCTTGAAGTTCAAC+CGG | 0.489348 | 5.2:+77958727 | MS.gene030093:CDS |
| TACAAAAGAAAACGACAAAG+TGG | 0.494694 | 5.2:+77958550 | MS.gene030093:CDS |
| TCACCTTCTCATAAAATCTC+CGG | 0.500478 | 5.2:-77965666 | None:intergenic |
| AATACCTTCTGAAACAACCT+TGG | 0.501857 | 5.2:-77958846 | None:intergenic |
| TGGAGAGCTGTGATGAGATT+GGG | 0.502339 | 5.2:+77959373 | MS.gene030093:CDS |
| TGGAGAGCTGTGATGAGATT+GGG | 0.502339 | 5.2:+77963951 | MS.gene030093:CDS |
| TATTATGATGGAAATGAGTC+GGG | 0.503594 | 5.2:+77959124 | MS.gene030093:CDS |
| TATTATGATGGAAATGAGTC+GGG | 0.503594 | 5.2:+77963702 | MS.gene030093:CDS |
| GAAAATGAAAATTCAAAACT+AGG | 0.506491 | 5.2:+77958626 | MS.gene030093:CDS |
| TATGCCTTTCATAATCAAGA+AGG | 0.508041 | 5.2:-77965974 | None:intergenic |
| TCCTCTACATTAACATTCGC+CGG | 0.508778 | 5.2:-77958584 | None:intergenic |
| CTTTAGTTCCTGGCCTTCTG+CGG | 0.509492 | 5.2:+77963185 | MS.gene030093:CDS |
| CTTTAGTTCCTGGCCTTCTG+CGG | 0.509492 | 5.2:+77967484 | MS.gene030093:CDS |
| TTGAAAACTTCTTTAGGGAG+AGG | 0.509895 | 5.2:+77959182 | MS.gene030093:CDS |
| TTGAAAACTTCTTTAGGGAG+AGG | 0.509895 | 5.2:+77963760 | MS.gene030093:CDS |
| TGTCAGATGATGTTAAAATT+GGG | 0.511487 | 5.2:+77958786 | MS.gene030093:CDS |
| AACAAATGTGGATGCTAGGT+CGG | 0.514957 | 5.2:+77967247 | MS.gene030093:CDS |
| CAGCCGCCTCAACCGAATGA+AGG | 0.516023 | 5.2:-77958892 | None:intergenic |
| TCATATGTTGGACACAGCTA+AGG | 0.516542 | 5.2:+77958919 | MS.gene030093:CDS |
| TTATTATGATGGAAATGAGT+CGG | 0.516599 | 5.2:+77959123 | MS.gene030093:CDS |
| TTATTATGATGGAAATGAGT+CGG | 0.516599 | 5.2:+77963701 | MS.gene030093:CDS |
| AGATACCCTTCATTCGGTTG+AGG | 0.521109 | 5.2:+77958886 | MS.gene030093:CDS |
| ATGTAAGTTGTGGCGGAGTG+TGG | 0.521969 | 5.2:+77960256 | MS.gene030093:CDS |
| ATGTAAGTTGTGGCGGAGTG+TGG | 0.521969 | 5.2:+77964788 | MS.gene030093:CDS |
| GGCCTTCTGCGGGAGGAGGT+AGG | 0.523574 | 5.2:+77967495 | MS.gene030093:CDS |
| CTTCTTTAGGGAGAGGAGCA+TGG | 0.528705 | 5.2:+77959189 | MS.gene030093:CDS |
| CTTCTTTAGGGAGAGGAGCA+TGG | 0.528705 | 5.2:+77963767 | MS.gene030093:CDS |
| ACAAATGTGGATGCTAGGTC+GGG | 0.529403 | 5.2:+77967248 | MS.gene030093:CDS |
| AGGCCCTTCTTGATTATGAA+AGG | 0.535189 | 5.2:+77965970 | MS.gene030093:intron |
| GGCTCTGGAGGAGATGTGAT+AGG | 0.536058 | 5.2:-77961454 | None:intergenic |
| TATGCCTTTCGTAATCAAGA+AGG | 0.542010 | 5.2:-77961405 | None:intergenic |
| GTCCTTGTATCATCAGGGGC+AGG | 0.543099 | 5.2:-77958983 | None:intergenic |
| AGTTCCTGGCCTTCTGCGGG+AGG | 0.546177 | 5.2:+77963189 | MS.gene030093:CDS |
| AGTTCCTGGCCTTCTGCGGG+AGG | 0.546177 | 5.2:+77967488 | MS.gene030093:CDS |
| AAACCCAAGGTTGTTTCAGA+AGG | 0.551480 | 5.2:+77958842 | MS.gene030093:CDS |
| ATAAAATCTCCGGAAAGTCC+AGG | 0.551594 | 5.2:-77965656 | None:intergenic |
| CCAAAGTACAAAATTTCTCA+TGG | 0.552895 | 5.2:-77967189 | None:intergenic |
| CTGCATTATCCATATAAGAT+GGG | 0.554084 | 5.2:-77962735 | None:intergenic |
| CTGCATTATCCATATAAGAT+GGG | 0.554084 | 5.2:-77967032 | None:intergenic |
| AGTTCAACCGGTTACTGTAG+AGG | 0.554846 | 5.2:+77958739 | MS.gene030093:CDS |
| GAGGAAGCTGACCATGTCAT+TGG | 0.555265 | 5.2:+77958602 | MS.gene030093:CDS |
| GCAGTACCTCCTCCCGCAGA+AGG | 0.555601 | 5.2:-77963198 | None:intergenic |
| TTGGGTATATGTGGATGCTA+TGG | 0.555897 | 5.2:+77963005 | MS.gene030093:CDS |
| TTCCTGCCCCTGATGATACA+AGG | 0.557681 | 5.2:+77958981 | MS.gene030093:CDS |
| GGAGAATGCCGAGAAGAAGA+AGG | 0.558229 | 5.2:+77967516 | MS.gene030093:CDS |
| CATACCTATGCTAACAAATG+TGG | 0.558835 | 5.2:+77967235 | MS.gene030093:CDS |
| GGAACAACTGTGGTTGACAT+AGG | 0.559671 | 5.2:+77967269 | MS.gene030093:CDS |
| CTCCTACCTCCTCCCGCAGA+AGG | 0.560155 | 5.2:-77967497 | None:intergenic |
| GAGATTGGGAGGCTATGAGA+AGG | 0.562330 | 5.2:+77959387 | MS.gene030093:CDS |
| GAGATTGGGAGGCTATGAGA+AGG | 0.562330 | 5.2:+77963965 | MS.gene030093:CDS |
| TTCCTGTCCTTGTATCATCA+GGG | 0.567796 | 5.2:-77958988 | None:intergenic |
| AGGCCCTTCTTGATTACGAA+AGG | 0.570162 | 5.2:+77961401 | MS.gene030093:intron |
| CTGTTCAGCAGCATATCTCC+GGG | 0.570165 | 5.2:-77962385 | None:intergenic |
| TCAACATTCACAGGCTCTGG+AGG | 0.570563 | 5.2:-77961466 | None:intergenic |
| TCAACATTCACAGGCTCTGG+AGG | 0.570563 | 5.2:-77966035 | None:intergenic |
| GCATCCACATTTGTTAGCAT+AGG | 0.571587 | 5.2:-77967239 | None:intergenic |
| TGTACAATTAGCGCTATCAT+GGG | 0.572800 | 5.2:+77968949 | MS.gene030093:intron |
| GCTCCTTCATAAAAGCTGCT+TGG | 0.572842 | 5.2:-77959159 | None:intergenic |
| GCTCCTTCATAAAAGCTGCT+TGG | 0.572842 | 5.2:-77963737 | None:intergenic |
| TGCTAACAAATGTGGATGCT+AGG | 0.572864 | 5.2:+77967243 | MS.gene030093:CDS |
| GGCGGCTGATGCTCATATGT+TGG | 0.573754 | 5.2:+77958907 | MS.gene030093:CDS |
| GGAACAGCTGTGGTTGACAT+AGG | 0.574547 | 5.2:+77962970 | MS.gene030093:CDS |
| TACCCTTCATTCGGTTGAGG+CGG | 0.575922 | 5.2:+77958889 | MS.gene030093:CDS |
| GCCCCTGATGATACAAGGAC+AGG | 0.576326 | 5.2:+77958986 | MS.gene030093:CDS |
| ATAAAATGTCCGGAAAGTCC+AGG | 0.582795 | 5.2:-77961089 | None:intergenic |
| TGTTAAAATTGGGAAGGAAG+AGG | 0.583384 | 5.2:+77958796 | MS.gene030093:CDS |
| AGCCGCCTCAACCGAATGAA+GGG | 0.583777 | 5.2:-77958891 | None:intergenic |
| CATTCTCCATAAAATTTGGG+AGG | 0.584904 | 5.2:-77959220 | None:intergenic |
| CATTCTCCATAAAATTTGGG+AGG | 0.584904 | 5.2:-77963798 | None:intergenic |
| GTTTAGCATCAGGTAGATCC+CGG | 0.586774 | 5.2:+77962367 | MS.gene030093:CDS |
| ATGCCTTTCATAATCAAGAA+GGG | 0.589284 | 5.2:-77965973 | None:intergenic |
| ATGCCTTTCGTAATCAAGAA+GGG | 0.591525 | 5.2:-77961404 | None:intergenic |
| CATATGTTGGACACAGCTAA+GGG | 0.591530 | 5.2:+77958920 | MS.gene030093:CDS |
| GCCTGTAGATAATGAAAACC+CGG | 0.601904 | 5.2:+77959063 | MS.gene030093:CDS |
| AGATGATGTTAAAATTGGGA+AGG | 0.607157 | 5.2:+77958790 | MS.gene030093:CDS |
| AGGTAACCTCATGTAAGTTG+TGG | 0.607979 | 5.2:+77960246 | MS.gene030093:intron |
| AGGTAACCTCATGTAAGTTG+TGG | 0.607979 | 5.2:+77964778 | MS.gene030093:intron |
| TGTAAGTTGTGGCGGAGTGT+GGG | 0.610524 | 5.2:+77960257 | MS.gene030093:CDS |
| TGTAAGTTGTGGCGGAGTGT+GGG | 0.610524 | 5.2:+77964789 | MS.gene030093:CDS |
| GAAAACGACAAAGTGGGTCA+GGG | 0.611750 | 5.2:+77958557 | MS.gene030093:CDS |
| AAATGAGTCGGGAACAGAAG+AGG | 0.612300 | 5.2:+77959135 | MS.gene030093:CDS |
| AAATGAGTCGGGAACAGAAG+AGG | 0.612300 | 5.2:+77963713 | MS.gene030093:CDS |
| TAACCTCATGTAAGTTGTGG+CGG | 0.622380 | 5.2:+77960249 | MS.gene030093:CDS |
| TAACCTCATGTAAGTTGTGG+CGG | 0.622380 | 5.2:+77964781 | MS.gene030093:CDS |
| TGCTAGGTCGGGAACAGCTG+TGG | 0.627055 | 5.2:+77962960 | MS.gene030093:intron |
| TCCTGTCCTTGTATCATCAG+GGG | 0.629902 | 5.2:-77958987 | None:intergenic |
| GAATGCCGAGAAGAAGAAGG+AGG | 0.630764 | 5.2:+77967519 | MS.gene030093:CDS |
| ACATATACCCAATCAGCAGA+AGG | 0.633534 | 5.2:-77962994 | None:intergenic |
| ACATATACCCAATCAGCAGA+AGG | 0.633534 | 5.2:-77967293 | None:intergenic |
| ATGCTGCTGAACAGGCTATG+CGG | 0.643981 | 5.2:+77962394 | MS.gene030093:CDS |
| ACAAAAGAAAACGACAAAGT+GGG | 0.644226 | 5.2:+77958551 | MS.gene030093:CDS |
| GTGGATGCTATGGTTGACAT+AGG | 0.648553 | 5.2:+77963015 | MS.gene030093:CDS |
| GTGGATGATATGGTTGACAT+AGG | 0.648553 | 5.2:+77967314 | MS.gene030093:CDS |
| TGAATATGCTTCTGATGTGA+AGG | 0.658428 | 5.2:+77958943 | MS.gene030093:CDS |
| GGCTCTGGAGGAGATGCGAT+AGG | 0.659024 | 5.2:-77966023 | None:intergenic |
| TCCGGCGAATGTTAATGTAG+AGG | 0.660878 | 5.2:+77958583 | MS.gene030093:CDS |
| GAAAGGCATAACATAAAAGG+CGG | 0.672469 | 5.2:+77965987 | MS.gene030093:CDS |
| ATATGCTTCTGATGTGAAGG+TGG | 0.676430 | 5.2:+77958946 | MS.gene030093:CDS |
| GCTGCTGAACAGGCTATGCG+GGG | 0.681802 | 5.2:+77962396 | MS.gene030093:CDS |
| CCGGAAAGTCCAGGAAACTG+TGG | 0.685217 | 5.2:-77965647 | None:intergenic |
| GAGTAACTGTGTCTTAACTG+TGG | 0.691268 | 5.2:-77967084 | None:intergenic |
| CCGGAAAGTCCAGGAAACTG+TGG | 0.692339 | 5.2:-77961080 | None:intergenic |
| TGCTAGGTCGGGAACAACTG+TGG | 0.692766 | 5.2:+77967259 | MS.gene030093:CDS |
| GGATGAAAATGTGAAACCCA+AGG | 0.695062 | 5.2:+77958829 | MS.gene030093:CDS |
| GAAAGGCATAACATAAAAGG+CGG | 0.700632 | 5.2:+77961418 | MS.gene030093:CDS |
| GAAGGAAGAGGTGCATGCTG+AGG | 0.700761 | 5.2:+77958808 | MS.gene030093:CDS |
| ACTCCGCCACAACTTACATG+AGG | 0.707054 | 5.2:-77960252 | None:intergenic |
| ACTCCGCCACAACTTACATG+AGG | 0.707054 | 5.2:-77964784 | None:intergenic |
| ATAATGCAGTCAAAGCAGCA+CGG | 0.717518 | 5.2:+77962749 | MS.gene030093:CDS |
| ATAATGCAGTCAAAGCAGCA+CGG | 0.717518 | 5.2:+77967046 | MS.gene030093:CDS |
| AGAGCTGTGATGAGATTGGG+AGG | 0.730490 | 5.2:+77959376 | MS.gene030093:CDS |
| AGAGCTGTGATGAGATTGGG+AGG | 0.730490 | 5.2:+77963954 | MS.gene030093:CDS |
| TCAATGGAACCAGAACAACG+AGG | 0.842680 | 5.2:+77968570 | MS.gene030093:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 77958542 | 77969015 | 77958542 | ID=MS.gene030093 |
| chr5.2 | mRNA | 77958542 | 77969015 | 77958542 | ID=MS.gene030093.t1;Parent=MS.gene030093 |
| chr5.2 | exon | 77958542 | 77959257 | 77958542 | ID=MS.gene030093.t1.exon1;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77958542 | 77959257 | 77958542 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77959369 | 77959408 | 77959369 | ID=MS.gene030093.t1.exon2;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77959369 | 77959408 | 77959369 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77960248 | 77960300 | 77960248 | ID=MS.gene030093.t1.exon3;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77960248 | 77960300 | 77960248 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77961072 | 77961117 | 77961072 | ID=MS.gene030093.t1.exon4;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77961072 | 77961117 | 77961072 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77961403 | 77961495 | 77961403 | ID=MS.gene030093.t1.exon5;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77961403 | 77961495 | 77961403 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77962366 | 77962473 | 77962366 | ID=MS.gene030093.t1.exon6;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77962366 | 77962473 | 77962366 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77962563 | 77962614 | 77962563 | ID=MS.gene030093.t1.exon7;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77962563 | 77962614 | 77962563 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77962716 | 77962791 | 77962716 | ID=MS.gene030093.t1.exon8;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77962716 | 77962791 | 77962716 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77962966 | 77963077 | 77962966 | ID=MS.gene030093.t1.exon9;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77962966 | 77963077 | 77962966 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77963163 | 77963213 | 77963163 | ID=MS.gene030093.t1.exon10;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77963163 | 77963213 | 77963163 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77963675 | 77963835 | 77963675 | ID=MS.gene030093.t1.exon11;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77963675 | 77963835 | 77963675 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77963947 | 77963986 | 77963947 | ID=MS.gene030093.t1.exon12;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77963947 | 77963986 | 77963947 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77964780 | 77964832 | 77964780 | ID=MS.gene030093.t1.exon13;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77964780 | 77964832 | 77964780 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77965639 | 77965684 | 77965639 | ID=MS.gene030093.t1.exon14;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77965639 | 77965684 | 77965639 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77965972 | 77966064 | 77965972 | ID=MS.gene030093.t1.exon15;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77965972 | 77966064 | 77965972 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77966858 | 77966909 | 77966858 | ID=MS.gene030093.t1.exon16;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77966858 | 77966909 | 77966858 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77967013 | 77967099 | 77967013 | ID=MS.gene030093.t1.exon17;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77967013 | 77967099 | 77967013 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77967189 | 77967352 | 77967189 | ID=MS.gene030093.t1.exon18;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77967189 | 77967352 | 77967189 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77967462 | 77967543 | 77967462 | ID=MS.gene030093.t1.exon19;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77967462 | 77967543 | 77967462 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77968503 | 77968616 | 77968503 | ID=MS.gene030093.t1.exon20;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77968503 | 77968616 | 77968503 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| chr5.2 | exon | 77968960 | 77969015 | 77968960 | ID=MS.gene030093.t1.exon21;Parent=MS.gene030093.t1 |
| chr5.2 | CDS | 77968960 | 77969015 | 77968960 | ID=cds.MS.gene030093.t1;Parent=MS.gene030093.t1 |
| Gene Sequence |
| Protein sequence |