Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030139.t1 | XP_024642355.1 | 97.8 | 230 | 5 | 0 | 100 | 329 | 1 | 230 | 6.00E-130 | 474.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030139.t1 | Q9SZL8 | 33.5 | 227 | 145 | 4 | 107 | 329 | 72 | 296 | 5.3e-34 | 146.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030139.t1 | A0A2K3PRH2 | 81.5 | 232 | 43 | 0 | 98 | 329 | 32 | 263 | 2.0e-111 | 412.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene030139.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030139.t1 | MTR_0402s0040 | 44.086 | 186 | 98 | 3 | 108 | 288 | 26 | 210 | 5.35e-40 | 149 |
| MS.gene030139.t1 | MTR_5g039760 | 37.186 | 199 | 99 | 3 | 105 | 302 | 7 | 180 | 1.80e-38 | 137 |
| MS.gene030139.t1 | MTR_0558s0020 | 32.567 | 261 | 154 | 4 | 88 | 329 | 19 | 276 | 3.41e-37 | 137 |
| MS.gene030139.t1 | MTR_4g102720 | 42.262 | 168 | 62 | 2 | 103 | 270 | 2 | 134 | 6.26e-37 | 134 |
| MS.gene030139.t1 | MTR_1g083640 | 32.075 | 265 | 153 | 5 | 80 | 320 | 21 | 282 | 1.82e-34 | 129 |
| MS.gene030139.t1 | MTR_7g074790 | 39.773 | 176 | 81 | 3 | 105 | 277 | 7 | 160 | 5.92e-34 | 126 |
| MS.gene030139.t1 | MTR_6g051425 | 31.466 | 232 | 148 | 5 | 107 | 329 | 13 | 242 | 1.23e-29 | 117 |
| MS.gene030139.t1 | MTR_6g090505 | 35.437 | 206 | 114 | 5 | 140 | 329 | 9 | 211 | 1.20e-26 | 109 |
| MS.gene030139.t1 | MTR_8g446020 | 35.714 | 154 | 99 | 0 | 176 | 329 | 83 | 236 | 1.13e-25 | 104 |
| MS.gene030139.t1 | MTR_5g015480 | 45.082 | 122 | 66 | 1 | 108 | 228 | 56 | 177 | 1.60e-24 | 101 |
| MS.gene030139.t1 | MTR_7g061980 | 40.678 | 118 | 67 | 2 | 102 | 218 | 4 | 119 | 9.92e-24 | 95.5 |
| MS.gene030139.t1 | MTR_0337s0040 | 33.553 | 152 | 101 | 0 | 163 | 314 | 71 | 222 | 1.44e-21 | 92.8 |
| MS.gene030139.t1 | MTR_2g014100 | 29.204 | 226 | 135 | 5 | 80 | 286 | 22 | 241 | 2.99e-20 | 89.7 |
| MS.gene030139.t1 | MTR_2g070590 | 42.857 | 105 | 59 | 1 | 108 | 211 | 17 | 121 | 2.92e-19 | 83.2 |
| MS.gene030139.t1 | MTR_1g057920 | 48.889 | 90 | 45 | 1 | 108 | 196 | 34 | 123 | 5.19e-19 | 82.8 |
| MS.gene030139.t1 | MTR_6g017200 | 44.792 | 96 | 52 | 1 | 108 | 202 | 58 | 153 | 6.09e-18 | 80.5 |
| MS.gene030139.t1 | MTR_1g013060 | 26.667 | 225 | 151 | 4 | 98 | 310 | 8 | 230 | 1.95e-17 | 81.3 |
| MS.gene030139.t1 | MTR_7g113010 | 38.889 | 126 | 64 | 1 | 108 | 233 | 457 | 569 | 7.17e-17 | 82.8 |
| MS.gene030139.t1 | MTR_5g076070 | 25.792 | 221 | 160 | 2 | 111 | 329 | 56 | 274 | 1.08e-16 | 80.1 |
| MS.gene030139.t1 | MTR_1g070355 | 25.792 | 221 | 150 | 3 | 113 | 326 | 79 | 292 | 4.22e-16 | 80.5 |
| MS.gene030139.t1 | MTR_2g098920 | 36.538 | 104 | 63 | 3 | 107 | 209 | 79 | 180 | 1.92e-15 | 76.3 |
| MS.gene030139.t1 | MTR_4g067290 | 36.190 | 105 | 64 | 3 | 107 | 210 | 55 | 157 | 3.60e-15 | 74.7 |
| MS.gene030139.t1 | MTR_4g067290 | 36.190 | 105 | 64 | 3 | 107 | 210 | 55 | 157 | 3.66e-15 | 74.7 |
| MS.gene030139.t1 | MTR_4g067290 | 36.190 | 105 | 64 | 3 | 107 | 210 | 73 | 175 | 6.48e-15 | 74.3 |
| MS.gene030139.t1 | MTR_4g067290 | 36.190 | 105 | 64 | 3 | 107 | 210 | 75 | 177 | 6.80e-15 | 74.3 |
| MS.gene030139.t1 | MTR_4g067290 | 36.190 | 105 | 64 | 3 | 107 | 210 | 75 | 177 | 7.00e-15 | 74.3 |
| MS.gene030139.t1 | MTR_4g067290 | 36.190 | 105 | 64 | 3 | 107 | 210 | 115 | 217 | 1.06e-14 | 74.3 |
| MS.gene030139.t1 | MTR_2g099430 | 41.573 | 89 | 49 | 2 | 131 | 218 | 26 | 112 | 9.12e-14 | 67.8 |
| MS.gene030139.t1 | MTR_3g008240 | 28.108 | 185 | 111 | 3 | 90 | 255 | 21 | 202 | 2.81e-12 | 65.9 |
| MS.gene030139.t1 | MTR_2g098880 | 33.333 | 138 | 81 | 4 | 107 | 234 | 60 | 196 | 6.06e-12 | 65.9 |
| MS.gene030139.t1 | MTR_1g055240 | 34.259 | 108 | 71 | 0 | 176 | 283 | 34 | 141 | 6.67e-12 | 63.5 |
| MS.gene030139.t1 | MTR_0019s0290 | 32.432 | 111 | 75 | 0 | 176 | 286 | 49 | 159 | 6.78e-12 | 63.5 |
| MS.gene030139.t1 | MTR_2g098880 | 32.624 | 141 | 84 | 4 | 107 | 237 | 72 | 211 | 7.64e-12 | 65.5 |
| MS.gene030139.t1 | MTR_1g008290 | 26.241 | 141 | 99 | 2 | 165 | 305 | 9 | 144 | 2.16e-11 | 62.0 |
| MS.gene030139.t1 | MTR_4g040430 | 29.944 | 177 | 96 | 8 | 99 | 255 | 29 | 197 | 3.12e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030139.t1 | AT4G38180 | 33.043 | 230 | 148 | 4 | 104 | 329 | 69 | 296 | 3.49e-36 | 140 |
| MS.gene030139.t1 | AT4G15090 | 26.923 | 234 | 167 | 4 | 98 | 329 | 41 | 272 | 2.91e-23 | 102 |
| MS.gene030139.t1 | AT4G15090 | 26.923 | 234 | 167 | 4 | 98 | 329 | 41 | 272 | 2.91e-23 | 102 |
| MS.gene030139.t1 | AT4G15090 | 26.923 | 234 | 167 | 4 | 98 | 329 | 41 | 272 | 2.91e-23 | 102 |
| MS.gene030139.t1 | AT4G15090 | 26.923 | 234 | 167 | 4 | 98 | 329 | 41 | 272 | 2.91e-23 | 102 |
| MS.gene030139.t1 | AT4G15090 | 26.923 | 234 | 167 | 4 | 98 | 329 | 41 | 272 | 2.91e-23 | 102 |
| MS.gene030139.t1 | AT3G06250 | 30.734 | 218 | 106 | 7 | 107 | 321 | 189 | 364 | 1.48e-17 | 85.1 |
| MS.gene030139.t1 | AT3G06250 | 41.441 | 111 | 48 | 4 | 107 | 214 | 27 | 123 | 5.21e-15 | 77.4 |
| MS.gene030139.t1 | AT3G06250 | 30.734 | 218 | 106 | 7 | 107 | 321 | 189 | 364 | 1.48e-17 | 85.1 |
| MS.gene030139.t1 | AT3G06250 | 41.441 | 111 | 48 | 4 | 107 | 214 | 27 | 123 | 5.21e-15 | 77.4 |
| MS.gene030139.t1 | AT3G06250 | 30.734 | 218 | 106 | 7 | 107 | 321 | 189 | 364 | 1.48e-17 | 85.1 |
| MS.gene030139.t1 | AT3G06250 | 41.441 | 111 | 48 | 4 | 107 | 214 | 27 | 123 | 5.21e-15 | 77.4 |
| MS.gene030139.t1 | AT5G18960 | 28.311 | 219 | 113 | 7 | 107 | 321 | 210 | 388 | 3.35e-15 | 77.8 |
| MS.gene030139.t1 | AT5G18960 | 42.308 | 104 | 45 | 3 | 107 | 209 | 42 | 131 | 1.70e-14 | 75.9 |
| MS.gene030139.t1 | AT5G18960 | 28.311 | 219 | 113 | 7 | 107 | 321 | 210 | 388 | 3.35e-15 | 77.8 |
| MS.gene030139.t1 | AT5G18960 | 42.308 | 104 | 45 | 3 | 107 | 209 | 42 | 131 | 1.70e-14 | 75.9 |
| MS.gene030139.t1 | AT1G76320 | 26.457 | 223 | 143 | 9 | 113 | 329 | 2 | 209 | 1.30e-14 | 75.9 |
| MS.gene030139.t1 | AT1G76320 | 26.457 | 223 | 143 | 9 | 113 | 329 | 2 | 209 | 1.31e-14 | 76.3 |
| MS.gene030139.t1 | AT1G76320 | 26.457 | 223 | 143 | 9 | 113 | 329 | 2 | 209 | 1.31e-14 | 76.3 |
| MS.gene030139.t1 | AT1G76320 | 26.457 | 223 | 143 | 9 | 113 | 329 | 2 | 209 | 1.35e-14 | 75.9 |
| MS.gene030139.t1 | AT3G59470 | 37.500 | 104 | 62 | 3 | 107 | 209 | 69 | 170 | 1.42e-14 | 73.6 |
| MS.gene030139.t1 | AT3G59470 | 37.500 | 104 | 62 | 3 | 107 | 209 | 69 | 170 | 1.42e-14 | 73.6 |
| MS.gene030139.t1 | AT3G59470 | 37.500 | 104 | 62 | 3 | 107 | 209 | 81 | 182 | 1.87e-14 | 73.2 |
| MS.gene030139.t1 | AT2G27110 | 26.087 | 230 | 129 | 7 | 107 | 329 | 48 | 243 | 1.84e-12 | 69.3 |
| MS.gene030139.t1 | AT2G27110 | 26.087 | 230 | 129 | 7 | 107 | 329 | 48 | 243 | 1.84e-12 | 69.3 |
| MS.gene030139.t1 | AT3G22170 | 23.629 | 237 | 143 | 6 | 107 | 329 | 69 | 281 | 3.47e-12 | 68.6 |
| MS.gene030139.t1 | AT3G22170 | 23.629 | 237 | 143 | 6 | 107 | 329 | 69 | 281 | 3.47e-12 | 68.6 |
| MS.gene030139.t1 | AT5G28530 | 22.308 | 260 | 187 | 6 | 83 | 329 | 32 | 289 | 6.21e-12 | 67.8 |
| MS.gene030139.t1 | AT5G28530 | 22.308 | 260 | 187 | 6 | 83 | 329 | 32 | 289 | 6.21e-12 | 67.8 |
| MS.gene030139.t1 | AT5G28530 | 22.308 | 260 | 187 | 6 | 83 | 329 | 32 | 289 | 6.81e-12 | 67.8 |
| MS.gene030139.t1 | AT2G43280 | 32.653 | 147 | 72 | 6 | 102 | 234 | 16 | 149 | 4.98e-11 | 62.4 |
| MS.gene030139.t1 | AT5G28530 | 23.858 | 197 | 144 | 4 | 83 | 275 | 32 | 226 | 6.57e-11 | 64.3 |
| MS.gene030139.t1 | AT5G28530 | 23.858 | 197 | 144 | 4 | 83 | 275 | 32 | 226 | 6.66e-11 | 64.3 |
Find 84 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATACATAAAAGATAT+TGG | 0.219544 | 8.3:-5599972 | MS.gene030139:CDS |
| TATTTGATTCCCATCTTTAC+AGG | 0.258379 | 8.3:+5599987 | None:intergenic |
| TTTGTTCTTCAACATCTAAT+TGG | 0.306446 | 8.3:+5599619 | None:intergenic |
| CTGACTTGTGATTTGAAACT+TGG | 0.337749 | 8.3:+5599323 | None:intergenic |
| ACAGAAAACTTACCATTAAT+AGG | 0.342346 | 8.3:+5599469 | None:intergenic |
| GGCTGATGCAAGAATGATAA+TGG | 0.346932 | 8.3:-5599580 | MS.gene030139:CDS |
| CGATGAATGAATGTCGCAAT+AGG | 0.365109 | 8.3:+5600743 | None:intergenic |
| TCCTCAAGCGCAACGGGATC+GGG | 0.366888 | 8.3:-5599293 | MS.gene030139:CDS |
| GAGAGAAGGCGGACGACGGC+AGG | 0.382888 | 8.3:-5602991 | MS.gene030139:CDS |
| ATTCATTGTCTCAAGGTAAC+AGG | 0.386269 | 8.3:-5600702 | MS.gene030139:intron |
| TCAAATACATAAAAGATATT+GGG | 0.396439 | 8.3:-5599971 | MS.gene030139:CDS |
| CTCCTCAAGCGCAACGGGAT+CGG | 0.409463 | 8.3:-5599294 | MS.gene030139:CDS |
| TAGGAAAACAATTTAATACT+TGG | 0.412515 | 8.3:-5600202 | MS.gene030139:CDS |
| CATCGGCTTGAAATAAGAAC+TGG | 0.429549 | 8.3:-5600014 | MS.gene030139:CDS |
| AACTGGATGCCCTGTAAAGA+TGG | 0.430816 | 8.3:-5599997 | MS.gene030139:CDS |
| TCCCGATCCCGTTGCGCTTG+AGG | 0.431714 | 8.3:+5599292 | None:intergenic |
| ATGGCCTCCTCAAGCGCAAC+GGG | 0.433269 | 8.3:-5599299 | MS.gene030139:CDS |
| CTTTGTGTCGAGTTCACAAC+CGG | 0.455183 | 8.3:-5599547 | MS.gene030139:CDS |
| ATGGAGGGAGATATGACAAC+AGG | 0.456858 | 8.3:-5603131 | None:intergenic |
| CAAAAGAGGGTTGGCGATGG+TGG | 0.458752 | 8.3:-5603047 | MS.gene030139:CDS |
| AGATTTGTGTGTAGTAAAGA+AGG | 0.465396 | 8.3:-5600077 | MS.gene030139:CDS |
| CCACTCAAATTCGTTATCCA+TGG | 0.470045 | 8.3:+5600235 | None:intergenic |
| GGAGAGACAACGTCGAATAC+TGG | 0.478237 | 8.3:+5600765 | None:intergenic |
| AACATGGCATACGGGGAGGC+TGG | 0.485408 | 8.3:-5599702 | MS.gene030139:CDS |
| GCAAGCATGTGAGTCGTCTC+AGG | 0.487890 | 8.3:+5599897 | None:intergenic |
| ACAATTTAATACTTGGGAAG+AGG | 0.492665 | 8.3:-5600195 | MS.gene030139:CDS |
| GATGAATGAATGTCGCAATA+GGG | 0.497818 | 8.3:+5600744 | None:intergenic |
| TACTTGAACAAAAGCAAAGA+TGG | 0.497887 | 8.3:-5600116 | MS.gene030139:CDS |
| GTTGGCGATGGTGGAGCAGA+GGG | 0.497963 | 8.3:-5603038 | MS.gene030139:CDS |
| GGATGTGAACTCGACACAAC+CGG | 0.499419 | 8.3:+5599528 | None:intergenic |
| ACTTGTGATTTGAAACTTGG+TGG | 0.502213 | 8.3:+5599326 | None:intergenic |
| GGAAGAGAAACATGGCATAC+GGG | 0.514817 | 8.3:-5599710 | MS.gene030139:CDS |
| TTTCAAATCACAAGTCAGAA+TGG | 0.520314 | 8.3:-5599318 | MS.gene030139:CDS |
| GAACAAAAGCAAAGATGGAA+TGG | 0.523067 | 8.3:-5600111 | MS.gene030139:CDS |
| AGGAAAACAATTTAATACTT+GGG | 0.524399 | 8.3:-5600201 | MS.gene030139:CDS |
| AGGAAGAGAAACATGGCATA+CGG | 0.534557 | 8.3:-5599711 | MS.gene030139:CDS |
| AGGGGAGAGAAGGCGGACGA+CGG | 0.535123 | 8.3:-5602995 | MS.gene030139:CDS |
| AGAGAAGGCGGACGACGGCA+GGG | 0.537466 | 8.3:-5602990 | MS.gene030139:intron |
| GGTTGGCGATGGTGGAGCAG+AGG | 0.542105 | 8.3:-5603039 | MS.gene030139:CDS |
| GTCTCAAATTCATTGTCTCA+AGG | 0.543969 | 8.3:-5600709 | MS.gene030139:CDS |
| TGGACTCCATGATAAAATGA+TGG | 0.544164 | 8.3:+5599639 | None:intergenic |
| GTTGAGAGAGAGGGGAGAGA+AGG | 0.546062 | 8.3:-5603005 | MS.gene030139:CDS |
| ACTTATCTACAATCGTTAAG+TGG | 0.552805 | 8.3:-5599355 | MS.gene030139:CDS |
| TTAATACTTGGGAAGAGGCA+AGG | 0.554115 | 8.3:-5600190 | MS.gene030139:CDS |
| ACGACGACGGTTGAGAGAGA+GGG | 0.554126 | 8.3:-5603014 | MS.gene030139:CDS |
| ATTGCTTAACAACTAATCAT+CGG | 0.556534 | 8.3:-5600031 | MS.gene030139:CDS |
| AGAATTATCTTCGCAACAAG+AGG | 0.558780 | 8.3:-5599731 | MS.gene030139:CDS |
| GAGCTAATGAGTAGGCAAGT+TGG | 0.558945 | 8.3:-5599792 | MS.gene030139:CDS |
| ATTGACTTGGCAGATGATGC+AGG | 0.559444 | 8.3:-5599837 | MS.gene030139:CDS |
| GACGACGACGGTTGAGAGAG+AGG | 0.565232 | 8.3:-5603015 | MS.gene030139:CDS |
| ACTGGATGCCCTGTAAAGAT+GGG | 0.577229 | 8.3:-5599996 | MS.gene030139:CDS |
| ATTTGATTCCCATCTTTACA+GGG | 0.578211 | 8.3:+5599988 | None:intergenic |
| GAGAGAGAGGGGAGAGAAGG+CGG | 0.583172 | 8.3:-5603002 | MS.gene030139:CDS |
| GTCGACGTCGAGAACAAAAG+AGG | 0.583453 | 8.3:-5603061 | MS.gene030139:CDS |
| CTTTATTTGAGCTAATGAGT+AGG | 0.586245 | 8.3:-5599800 | MS.gene030139:CDS |
| CGATCCCGTTGCGCTTGAGG+AGG | 0.592282 | 8.3:+5599295 | None:intergenic |
| CGTCGAGAACAAAAGAGGGT+TGG | 0.595665 | 8.3:-5603056 | MS.gene030139:CDS |
| TCAAGCACATGAGATTGACT+TGG | 0.596091 | 8.3:-5599850 | MS.gene030139:CDS |
| GTATTTGAAACAAATTGAAG+TGG | 0.596437 | 8.3:+5599507 | None:intergenic |
| GATCCACGCGTGTGTAACCA+AGG | 0.602350 | 8.3:+5599757 | None:intergenic |
| AATGGCCTCCTCAAGCGCAA+CGG | 0.603233 | 8.3:-5599300 | MS.gene030139:CDS |
| GAACAAAAGAGGGTTGGCGA+TGG | 0.607799 | 8.3:-5603050 | MS.gene030139:CDS |
| CCATGGATAACGAATTTGAG+TGG | 0.608327 | 8.3:-5600235 | MS.gene030139:CDS |
| TGCACCACAAGCTATCTCCA+TGG | 0.608527 | 8.3:-5600252 | MS.gene030139:intron |
| CAACAAGAGGAAGAGAAACA+TGG | 0.615021 | 8.3:-5599718 | MS.gene030139:CDS |
| GAAGAGAAACATGGCATACG+GGG | 0.629053 | 8.3:-5599709 | MS.gene030139:CDS |
| CTAATGAGTAGGCAAGTTGG+TGG | 0.638000 | 8.3:-5599789 | MS.gene030139:CDS |
| GATGAGAACAGTGAGGACGA+AGG | 0.638874 | 8.3:-5603099 | MS.gene030139:CDS |
| GAACCTTGGTTACACACGCG+TGG | 0.645358 | 8.3:-5599760 | MS.gene030139:CDS |
| GCATGTGAGTCGTCTCAGGA+AGG | 0.645482 | 8.3:+5599901 | None:intergenic |
| TGGTGCGGAGACGACGACAA+TGG | 0.645511 | 8.3:+5600785 | None:intergenic |
| TTTGAGTGGAAACCTCGACT+AGG | 0.658485 | 8.3:-5600221 | MS.gene030139:CDS |
| GACGACAATGGTGACAACGA+TGG | 0.658681 | 8.3:+5600797 | None:intergenic |
| TCGACGTCGAGAACAAAAGA+GGG | 0.664782 | 8.3:-5603060 | MS.gene030139:CDS |
| ATGATGCAGGAATAGAGCAA+AGG | 0.666000 | 8.3:-5599824 | MS.gene030139:CDS |
| CGACGACGGTTGAGAGAGAG+GGG | 0.669823 | 8.3:-5603013 | MS.gene030139:CDS |
| GTTGGTGGTAGAGAGAACCT+TGG | 0.672049 | 8.3:-5599774 | MS.gene030139:CDS |
| TTGGCGATGGTGGAGCAGAG+GGG | 0.672235 | 8.3:-5603037 | MS.gene030139:CDS |
| GAGAAACATGGCATACGGGG+AGG | 0.672837 | 8.3:-5599706 | MS.gene030139:CDS |
| TGGAGCAGAGGGGACGACGA+CGG | 0.683248 | 8.3:-5603027 | MS.gene030139:CDS |
| TGGAGGGAGATATGACAACA+GGG | 0.707568 | 8.3:-5603130 | None:intergenic |
| GACAACGTCGAATACTGGTG+CGG | 0.711557 | 8.3:+5600770 | None:intergenic |
| CGAGAGAGATGAGAACAGTG+AGG | 0.748590 | 8.3:-5603106 | MS.gene030139:CDS |
| ATGGCAATCAAGAAGCACAG+CGG | 0.790001 | 8.3:+5600816 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTTTAAATTTATATT+TGG | + | chr8.3:5600626-5600645 | None:intergenic | 0.0% |
| !! | TATTAAAATTTACGAAAAAT+AGG | - | chr8.3:5600547-5600566 | MS.gene030139:intron | 10.0% |
| !! | TTAATTAAGATTTCATTAAA+AGG | + | chr8.3:5601413-5601432 | None:intergenic | 10.0% |
| !! | TTTGTTAAAGAAAAATATTA+CGG | - | chr8.3:5600387-5600406 | MS.gene030139:intron | 10.0% |
| !!! | AACAAATAACAAATATTTTT+TGG | - | chr8.3:5602802-5602821 | MS.gene030139:intron | 10.0% |
| !!! | ACAAATAACAAATATTTTTT+GGG | - | chr8.3:5602803-5602822 | MS.gene030139:intron | 10.0% |
| !! | AAAGATTTATTCAATCAAAT+AGG | - | chr8.3:5600055-5600074 | MS.gene030139:CDS | 15.0% |
| !! | AAGATTTATTCAATCAAATA+GGG | - | chr8.3:5600056-5600075 | MS.gene030139:CDS | 15.0% |
| !! | ATCAAATACATAAAAGATAT+TGG | - | chr8.3:5602432-5602451 | MS.gene030139:intron | 15.0% |
| !! | GATATTATAATAGTAAACTT+TGG | - | chr8.3:5600506-5600525 | MS.gene030139:intron | 15.0% |
| !! | TCAAATACATAAAAGATATT+GGG | - | chr8.3:5602433-5602452 | MS.gene030139:intron | 15.0% |
| !! | TTATACTTTGTCTATAATAT+AGG | - | chr8.3:5603012-5603031 | MS.gene030139:CDS | 15.0% |
| !!! | TGTTATTATGGATTAAATAA+GGG | + | chr8.3:5600903-5600922 | None:intergenic | 15.0% |
| !!! | TTGTTATTATGGATTAAATA+AGG | + | chr8.3:5600904-5600923 | None:intergenic | 15.0% |
| !! | AAAAAACTTAACACTCAAAA+GGG | + | chr8.3:5600111-5600130 | None:intergenic | 20.0% |
| !! | AAAATTTACGAAAAATAGGA+AGG | - | chr8.3:5600551-5600570 | MS.gene030139:intron | 20.0% |
| !! | AATATTATTGTTCTATTCCA+TGG | + | chr8.3:5600989-5601008 | None:intergenic | 20.0% |
| !! | AGGAAAACAATTTAATACTT+GGG | - | chr8.3:5602203-5602222 | MS.gene030139:intron | 20.0% |
| !! | ATAAATTGACATGCATATTA+AGG | + | chr8.3:5601862-5601881 | None:intergenic | 20.0% |
| !! | ATGGTTAAAAGAATTCTAAT+AGG | + | chr8.3:5602989-5603008 | None:intergenic | 20.0% |
| !! | ATTCTTACTAAAAATGGTAT+AGG | + | chr8.3:5600484-5600503 | None:intergenic | 20.0% |
| !! | CATTTCTTCAAAAAAAGAAT+TGG | - | chr8.3:5599822-5599841 | MS.gene030139:CDS | 20.0% |
| !! | GTTGAATACAAAATATTACT+AGG | - | chr8.3:5602078-5602097 | MS.gene030139:intron | 20.0% |
| !! | TAAAAAACTTAACACTCAAA+AGG | + | chr8.3:5600112-5600131 | None:intergenic | 20.0% |
| !! | TAAGATTTCATTAAAAGGAA+TGG | + | chr8.3:5601408-5601427 | None:intergenic | 20.0% |
| !! | TAGGAAAACAATTTAATACT+TGG | - | chr8.3:5602202-5602221 | MS.gene030139:intron | 20.0% |
| !! | TATAGACAAAGTATAAACAA+TGG | + | chr8.3:5603008-5603027 | None:intergenic | 20.0% |
| !! | TATCCAATTCTTACTAAAAA+TGG | + | chr8.3:5600490-5600509 | None:intergenic | 20.0% |
| !! | TATGATTGTTTATGACATAT+GGG | + | chr8.3:5602035-5602054 | None:intergenic | 20.0% |
| !!! | AAATACATGTGTTGTTATTA+TGG | + | chr8.3:5600915-5600934 | None:intergenic | 20.0% |
| !!! | AGTTTTATAGTATTTTGATG+AGG | + | chr8.3:5600353-5600372 | None:intergenic | 20.0% |
| !!! | ATACCATTTTTAGTAAGAAT+TGG | - | chr8.3:5600484-5600503 | MS.gene030139:intron | 20.0% |
| !!! | ATGTTATTTTTATGACACTT+AGG | - | chr8.3:5601930-5601949 | MS.gene030139:intron | 20.0% |
| !!! | CAAAATTTTAACTTTGTGAA+TGG | - | chr8.3:5600080-5600099 | MS.gene030139:CDS | 20.0% |
| !!! | CAATTCTTTTTTTGAAGAAA+TGG | + | chr8.3:5599824-5599843 | None:intergenic | 20.0% |
| !!! | GGTCTATTTTGATTTTTATA+AGG | + | chr8.3:5600326-5600345 | None:intergenic | 20.0% |
| !!! | TTAATTATTCTCAAGTTGAA+TGG | + | chr8.3:5599755-5599774 | None:intergenic | 20.0% |
| !!! | TTGTTTTCGACAAAAAAAAT+TGG | + | chr8.3:5601015-5601034 | None:intergenic | 20.0% |
| !!! | TTTGAGTGTTAAGTTTTTTA+CGG | - | chr8.3:5600112-5600131 | MS.gene030139:CDS | 20.0% |
| ! | AACAAAAGTGACTTGAAAAA+TGG | + | chr8.3:5600698-5600717 | None:intergenic | 25.0% |
| ! | ACAGAAAACTTACCATTAAT+AGG | + | chr8.3:5602938-5602957 | None:intergenic | 25.0% |
| ! | ATGATTGTTTATGACATATG+GGG | + | chr8.3:5602034-5602053 | None:intergenic | 25.0% |
| ! | ATGTTTAAGCGTTTAAGAAT+TGG | - | chr8.3:5599794-5599813 | MS.gene030139:CDS | 25.0% |
| ! | ATTAATTTAGCCTAGCATAA+TGG | - | chr8.3:5601137-5601156 | MS.gene030139:intron | 25.0% |
| ! | ATTGCTTAACAACTAATCAT+CGG | - | chr8.3:5602373-5602392 | MS.gene030139:intron | 25.0% |
| ! | ATTTCATTAAAAGGAATGGA+CGG | + | chr8.3:5601404-5601423 | None:intergenic | 25.0% |
| ! | CTATGATTGTTTATGACATA+TGG | + | chr8.3:5602036-5602055 | None:intergenic | 25.0% |
| ! | GACACATTAAAATGAATGAA+GGG | + | chr8.3:5601442-5601461 | None:intergenic | 25.0% |
| ! | GGATTAAATAAGGGTAAATA+AGG | + | chr8.3:5600894-5600913 | None:intergenic | 25.0% |
| ! | TGACACATTAAAATGAATGA+AGG | + | chr8.3:5601443-5601462 | None:intergenic | 25.0% |
| ! | TGTTAAAGTGACAGATAAAT+AGG | - | chr8.3:5601232-5601251 | MS.gene030139:intron | 25.0% |
| ! | TTGTTTATGTGGAATGAAAA+TGG | - | chr8.3:5601743-5601762 | MS.gene030139:intron | 25.0% |
| ! | TTTCATTGCTCTTCATTTAA+AGG | - | chr8.3:5599660-5599679 | MS.gene030139:CDS | 25.0% |
| ! | TTTGTTCTTCAACATCTAAT+TGG | + | chr8.3:5602788-5602807 | None:intergenic | 25.0% |
| !! | AAGAGGTTTCTATTATTTCT+AGG | + | chr8.3:5601505-5601524 | None:intergenic | 25.0% |
| !! | AATGATTATGGTGGAAAAAT+TGG | - | chr8.3:5602246-5602265 | MS.gene030139:intron | 25.0% |
| !! | GAAAATCCATCATTTTATCA+TGG | - | chr8.3:5602759-5602778 | MS.gene030139:intron | 25.0% |
| !! | GTATTTGAAACAAATTGAAG+TGG | + | chr8.3:5602900-5602919 | None:intergenic | 25.0% |
| !! | TTGTTCAAATTTTCAACATG+TGG | - | chr8.3:5600713-5600732 | MS.gene030139:CDS | 25.0% |
| !!! | AATTTTAACTTTGTGAATGG+TGG | - | chr8.3:5600083-5600102 | MS.gene030139:CDS | 25.0% |
| !!! | AATTTTTGGAATGATTATGG+TGG | - | chr8.3:5602237-5602256 | MS.gene030139:intron | 25.0% |
| !!! | AGAGGTTTCTATTATTTCTA+GGG | + | chr8.3:5601504-5601523 | None:intergenic | 25.0% |
| !!! | AGGAATTTTTGGAATGATTA+TGG | - | chr8.3:5602234-5602253 | MS.gene030139:intron | 25.0% |
| !!! | TAGTTTTACTAGCCTATTAA+TGG | - | chr8.3:5602923-5602942 | MS.gene030139:intron | 25.0% |
| AAAATGGTGATAGTACACTT+AGG | - | chr8.3:5601759-5601778 | MS.gene030139:intron | 30.0% | |
| AAATGAAGAGCAATGAAACA+TGG | + | chr8.3:5599658-5599677 | None:intergenic | 30.0% | |
| AAGAACCAAAATGACAGATT+TGG | + | chr8.3:5601788-5601807 | None:intergenic | 30.0% | |
| ACAATTTAATACTTGGGAAG+AGG | - | chr8.3:5602209-5602228 | MS.gene030139:intron | 30.0% | |
| ACTTATCTACAATCGTTAAG+TGG | - | chr8.3:5603049-5603068 | MS.gene030139:CDS | 30.0% | |
| AGAGTTGTCTAATATAGACT+TGG | + | chr8.3:5600589-5600608 | None:intergenic | 30.0% | |
| AGATTTGTGTGTAGTAAAGA+AGG | - | chr8.3:5602327-5602346 | MS.gene030139:intron | 30.0% | |
| AGTGATTTCAACTTGATTAG+AGG | - | chr8.3:5599930-5599949 | MS.gene030139:CDS | 30.0% | |
| AGTTAAAACGACACATATAG+AGG | + | chr8.3:5600828-5600847 | None:intergenic | 30.0% | |
| ATGTGACCGTTAAAAATGAA+CGG | - | chr8.3:5601272-5601291 | MS.gene030139:intron | 30.0% | |
| ATTGTATACTCCATTATGCT+AGG | + | chr8.3:5601150-5601169 | None:intergenic | 30.0% | |
| ATTTGATTCCCATCTTTACA+GGG | + | chr8.3:5602419-5602438 | None:intergenic | 30.0% | |
| CCACATAAACAAATTTCGAA+TGG | + | chr8.3:5601735-5601754 | None:intergenic | 30.0% | |
| GAGAAAACAAGAGACATATT+TGG | + | chr8.3:5602012-5602031 | None:intergenic | 30.0% | |
| GGAGTATACAATTAATGTGT+AGG | - | chr8.3:5601158-5601177 | MS.gene030139:intron | 30.0% | |
| GTGAATCTATATATGAACGT+TGG | + | chr8.3:5600771-5600790 | None:intergenic | 30.0% | |
| TACTTGAACAAAAGCAAAGA+TGG | - | chr8.3:5602288-5602307 | MS.gene030139:intron | 30.0% | |
| TAGTAGTAATTGAGAGGTTA+GGG | - | chr8.3:5601181-5601200 | MS.gene030139:intron | 30.0% | |
| TATTTGATTCCCATCTTTAC+AGG | + | chr8.3:5602420-5602439 | None:intergenic | 30.0% | |
| TTTCAAATCACAAGTCAGAA+TGG | - | chr8.3:5603086-5603105 | MS.gene030139:CDS | 30.0% | |
| ! | AACTTTTCTTTCGCATATAC+AGG | + | chr8.3:5600415-5600434 | None:intergenic | 30.0% |
| ! | CCATTCGAAATTTGTTTATG+TGG | - | chr8.3:5601732-5601751 | MS.gene030139:intron | 30.0% |
| ! | CTTTATTTGAGCTAATGAGT+AGG | - | chr8.3:5602604-5602623 | MS.gene030139:intron | 30.0% |
| ! | GGTGATTTTCTTTCTTTGAA+AGG | + | chr8.3:5600677-5600696 | None:intergenic | 30.0% |
| ! | GTTAAGCAATCTCTTTTATC+TGG | + | chr8.3:5602363-5602382 | None:intergenic | 30.0% |
| ! | TTAAATTGTTTTCCTAGTCG+AGG | + | chr8.3:5602198-5602217 | None:intergenic | 30.0% |
| !! | GAGGTTTCTATTATTTCTAG+GGG | + | chr8.3:5601503-5601522 | None:intergenic | 30.0% |
| !! | TTATTCTCAAGTTGAATGGT+CGG | + | chr8.3:5599751-5599770 | None:intergenic | 30.0% |
| !!! | ATAGACTAATTTTTCGAGTC+AGG | + | chr8.3:5599999-5600018 | None:intergenic | 30.0% |
| !!! | ATAGTATTTTGATGAGGCTT+CGG | + | chr8.3:5600347-5600366 | None:intergenic | 30.0% |
| !!! | GAAGCTAGTTTTAAGTTGTT+GGG | - | chr8.3:5601835-5601854 | MS.gene030139:intron | 30.0% |
| !!! | TGAAGCTAGTTTTAAGTTGT+TGG | - | chr8.3:5601834-5601853 | MS.gene030139:intron | 30.0% |
| AAAATAGGAAGGTCCATAGT+TGG | - | chr8.3:5600562-5600581 | MS.gene030139:intron | 35.0% | |
| AAATAGGAAGGTCCATAGTT+GGG | - | chr8.3:5600563-5600582 | MS.gene030139:intron | 35.0% | |
| AACTCAACTCACTATAACCA+AGG | - | chr8.3:5600844-5600863 | MS.gene030139:intron | 35.0% | |
| AATGAAACATGGACGTACTA+AGG | + | chr8.3:5599647-5599666 | None:intergenic | 35.0% | |
| AGAAAAGGAAGAGATAGGAT+GGG | - | chr8.3:5599516-5599535 | MS.gene030139:CDS | 35.0% | |
| AGAATTATCTTCGCAACAAG+AGG | - | chr8.3:5602673-5602692 | MS.gene030139:intron | 35.0% | |
| AGTAGTAATTGAGAGGTTAG+GGG | - | chr8.3:5601182-5601201 | MS.gene030139:intron | 35.0% | |
| ATTCATTGTCTCAAGGTAAC+AGG | - | chr8.3:5601702-5601721 | MS.gene030139:intron | 35.0% | |
| ATTGTTTCACAGGAGAAAAC+AGG | + | chr8.3:5601376-5601395 | None:intergenic | 35.0% | |
| GAACAAAAGCAAAGATGGAA+TGG | - | chr8.3:5602293-5602312 | MS.gene030139:intron | 35.0% | |
| GATGAATGAATGTCGCAATA+GGG | + | chr8.3:5601663-5601682 | None:intergenic | 35.0% | |
| GGTGCAACAATAGAATCAAT+TGG | + | chr8.3:5602138-5602157 | None:intergenic | 35.0% | |
| GTAGTAGTAATTGAGAGGTT+AGG | - | chr8.3:5601180-5601199 | MS.gene030139:intron | 35.0% | |
| GTCTCAAATTCATTGTCTCA+AGG | - | chr8.3:5601695-5601714 | MS.gene030139:intron | 35.0% | |
| TATATATGAACGTTGGACAC+AGG | + | chr8.3:5600764-5600783 | None:intergenic | 35.0% | |
| TCTTCTCTTACTATTGCAGT+AGG | - | chr8.3:5602109-5602128 | MS.gene030139:intron | 35.0% | |
| TGGACTCCATGATAAAATGA+TGG | + | chr8.3:5602768-5602787 | None:intergenic | 35.0% | |
| TGTAGGTAGTAGTAATTGAG+AGG | - | chr8.3:5601175-5601194 | MS.gene030139:intron | 35.0% | |
| TGTTATGGAAGAAGATGAAG+AGG | + | chr8.3:5601522-5601541 | None:intergenic | 35.0% | |
| TGTTCTATTCCATGGCATTT+AGG | + | chr8.3:5600981-5601000 | None:intergenic | 35.0% | |
| ! | ACAAGTGTTGCATTTCTATG+TGG | - | chr8.3:5599599-5599618 | MS.gene030139:CDS | 35.0% |
| ! | ACACTTAGGTCTGTGATTTT+TGG | - | chr8.3:5601944-5601963 | MS.gene030139:intron | 35.0% |
| ! | ACTTGTGATTTGAAACTTGG+TGG | + | chr8.3:5603081-5603100 | None:intergenic | 35.0% |
| ! | CTACACACTTTTGTTGAAAG+TGG | + | chr8.3:5602740-5602759 | None:intergenic | 35.0% |
| ! | CTGACTTGTGATTTGAAACT+TGG | + | chr8.3:5603084-5603103 | None:intergenic | 35.0% |
| ! | GATGCTTTCTAGAGAACTAT+TGG | + | chr8.3:5601073-5601092 | None:intergenic | 35.0% |
| !! | CTTCCTCCGTTCATTTTTAA+CGG | + | chr8.3:5601281-5601300 | None:intergenic | 35.0% |
| !! | GAGAACTATTGGCTTAAGAT+TGG | + | chr8.3:5601062-5601081 | None:intergenic | 35.0% |
| !! | TCTGTCACTTTAACACTTTG+TGG | + | chr8.3:5601227-5601246 | None:intergenic | 35.0% |
| !!! | AAAGATGGAATGGTTTTGTC+TGG | - | chr8.3:5602303-5602322 | MS.gene030139:intron | 35.0% |
| AAACAGGAGGAAATTTCCAC+TGG | + | chr8.3:5601360-5601379 | None:intergenic | 40.0% | |
| ACTCACTATAACCAAGGCAA+AGG | - | chr8.3:5600850-5600869 | MS.gene030139:intron | 40.0% | |
| AGATTGTTTGACCTTTGCCT+TGG | + | chr8.3:5600864-5600883 | None:intergenic | 40.0% | |
| AGGAAGAGAAACATGGCATA+CGG | - | chr8.3:5602693-5602712 | MS.gene030139:intron | 40.0% | |
| ATATAGACTTGGCCCAACTA+TGG | + | chr8.3:5600578-5600597 | None:intergenic | 40.0% | |
| ATGATGCAGGAATAGAGCAA+AGG | - | chr8.3:5602580-5602599 | MS.gene030139:intron | 40.0% | |
| CAACAAGAGGAAGAGAAACA+TGG | - | chr8.3:5602686-5602705 | MS.gene030139:intron | 40.0% | |
| CATCTGTGGCCTTTGTAAAA+CGG | - | chr8.3:5601089-5601108 | MS.gene030139:intron | 40.0% | |
| CCACTCAAATTCGTTATCCA+TGG | + | chr8.3:5602172-5602191 | None:intergenic | 40.0% | |
| CCATGGATAACGAATTTGAG+TGG | - | chr8.3:5602169-5602188 | MS.gene030139:intron | 40.0% | |
| CGATGAATGAATGTCGCAAT+AGG | + | chr8.3:5601664-5601683 | None:intergenic | 40.0% | |
| CGTGAAATTAAGCAGACATG+TGG | - | chr8.3:5601901-5601920 | MS.gene030139:intron | 40.0% | |
| CTTTGTAAAACGGATCGGAA+TGG | - | chr8.3:5601099-5601118 | MS.gene030139:intron | 40.0% | |
| GACACATATAGAGGAACAGA+GGG | + | chr8.3:5600819-5600838 | None:intergenic | 40.0% | |
| GAGAAAAGGAAGAGATAGGA+TGG | - | chr8.3:5599515-5599534 | MS.gene030139:CDS | 40.0% | |
| GGCTGATGCAAGAATGATAA+TGG | - | chr8.3:5602824-5602843 | MS.gene030139:intron | 40.0% | |
| GTGAGTTCTATGGACAAGTA+CGG | - | chr8.3:5599436-5599455 | MS.gene030139:intron | 40.0% | |
| TCAAGCACATGAGATTGACT+TGG | - | chr8.3:5602554-5602573 | MS.gene030139:intron | 40.0% | |
| TCTTCCATAACAACACAGAC+CGG | - | chr8.3:5601530-5601549 | MS.gene030139:intron | 40.0% | |
| TGACCGTTAAAAATGAACGG+AGG | - | chr8.3:5601275-5601294 | MS.gene030139:intron | 40.0% | |
| TGAGGAGAAAAGGAAGAGAT+AGG | - | chr8.3:5599511-5599530 | MS.gene030139:CDS | 40.0% | |
| TTAATACTTGGGAAGAGGCA+AGG | - | chr8.3:5602214-5602233 | MS.gene030139:intron | 40.0% | |
| TTATCCATGGAGATAGCTTG+TGG | + | chr8.3:5602159-5602178 | None:intergenic | 40.0% | |
| ! | CATTCCGATCCGTTTTACAA+AGG | + | chr8.3:5601101-5601120 | None:intergenic | 40.0% |
| ! | CTTTGAAAGCCTAAATGCCA+TGG | - | chr8.3:5600969-5600988 | MS.gene030139:intron | 40.0% |
| !! | AGTTCTCTAGAAAGCATCTG+TGG | - | chr8.3:5601075-5601094 | MS.gene030139:intron | 40.0% |
| !! | CATCGGCTTGAAATAAGAAC+TGG | - | chr8.3:5602390-5602409 | MS.gene030139:intron | 40.0% |
| !! | CTATTGGCTTAAGATTGGCT+CGG | + | chr8.3:5601057-5601076 | None:intergenic | 40.0% |
| !! | GGTGACCAAATCTGTCATTT+TGG | - | chr8.3:5601780-5601799 | MS.gene030139:intron | 40.0% |
| AACTGGATGCCCTGTAAAGA+TGG | - | chr8.3:5602407-5602426 | MS.gene030139:intron | 45.0% | |
| ACTGGATGCCCTGTAAAGAT+GGG | - | chr8.3:5602408-5602427 | MS.gene030139:intron | 45.0% | |
| AGATAGGATGGGAAGTGATG+AGG | - | chr8.3:5599527-5599546 | MS.gene030139:CDS | 45.0% | |
| AGCAGACACAAATGTCGAGT+TGG | + | chr8.3:5599703-5599722 | None:intergenic | 45.0% | |
| ATGAAAGAACATGCCAGCGA+AGG | - | chr8.3:5601320-5601339 | MS.gene030139:intron | 45.0% | |
| CGACACATATAGAGGAACAG+AGG | + | chr8.3:5600820-5600839 | None:intergenic | 45.0% | |
| CTTGTCATCACGTTGTCGAA+TGG | + | chr8.3:5599912-5599931 | None:intergenic | 45.0% | |
| CTTTGTGTCGAGTTCACAAC+CGG | - | chr8.3:5602857-5602876 | MS.gene030139:intron | 45.0% | |
| GAAACATGGACGTACTAAGG+TGG | + | chr8.3:5599644-5599663 | None:intergenic | 45.0% | |
| GAAGAGAAACATGGCATACG+GGG | - | chr8.3:5602695-5602714 | MS.gene030139:intron | 45.0% | |
| GACGGCTAAGATTGTTTCAC+AGG | + | chr8.3:5601386-5601405 | None:intergenic | 45.0% | |
| GAGCTAATGAGTAGGCAAGT+TGG | - | chr8.3:5602612-5602631 | MS.gene030139:intron | 45.0% | |
| GATAGGATGGGAAGTGATGA+GGG | - | chr8.3:5599528-5599547 | MS.gene030139:CDS | 45.0% | |
| GGAAGAGAAACATGGCATAC+GGG | - | chr8.3:5602694-5602713 | MS.gene030139:intron | 45.0% | |
| GTCTATGCAACTACACGTAG+AGG | - | chr8.3:5600013-5600032 | MS.gene030139:CDS | 45.0% | |
| GTGGCCTTTGTAAAACGGAT+CGG | - | chr8.3:5601094-5601113 | MS.gene030139:intron | 45.0% | |
| GTTTCACAGGAGAAAACAGG+AGG | + | chr8.3:5601373-5601392 | None:intergenic | 45.0% | |
| TCGACGTCGAGAACAAAAGA+GGG | - | chr8.3:5599344-5599363 | MS.gene030139:CDS | 45.0% | |
| TGAAAGAACATGCCAGCGAA+GGG | - | chr8.3:5601321-5601340 | MS.gene030139:intron | 45.0% | |
| TTGTGATGCACTTGGTACGT+GGG | + | chr8.3:5600741-5600760 | None:intergenic | 45.0% | |
| TTTGAGTGGAAACCTCGACT+AGG | - | chr8.3:5602183-5602202 | MS.gene030139:intron | 45.0% | |
| ! | ATGGCAATCAAGAAGCACAG+CGG | + | chr8.3:5601591-5601610 | None:intergenic | 45.0% |
| ! | CAAGTTGAATGGTCGGATGT+CGG | + | chr8.3:5599744-5599763 | None:intergenic | 45.0% |
| ! | CTAATGAGTAGGCAAGTTGG+TGG | - | chr8.3:5602615-5602634 | MS.gene030139:intron | 45.0% |
| ! | GGGAAGAGGCAAGGAATTTT+TGG | - | chr8.3:5602223-5602242 | MS.gene030139:intron | 45.0% |
| ! | TCTTTTGTTCTCGACGTCGA+CGG | + | chr8.3:5599344-5599363 | None:intergenic | 45.0% |
| ! | TTCACCGGTCTGTGTTGTTA+TGG | + | chr8.3:5601537-5601556 | None:intergenic | 45.0% |
| !! | ATTGACTTGGCAGATGATGC+AGG | - | chr8.3:5602567-5602586 | MS.gene030139:intron | 45.0% |
| AAAACGGATCGGAATGGCAC+TGG | - | chr8.3:5601105-5601124 | MS.gene030139:intron | 50.0% | |
| AAGCCAGAACGTGAAAAGGG+AGG | + | chr8.3:5601480-5601499 | None:intergenic | 50.0% | |
| AGAACGTGAAAAGGGAGGGA+GGG | + | chr8.3:5601475-5601494 | None:intergenic | 50.0% | |
| AGCCAGAACGTGAAAAGGGA+GGG | + | chr8.3:5601479-5601498 | None:intergenic | 50.0% | |
| AGGGTGTAGACATCGTTCAC+CGG | + | chr8.3:5601552-5601571 | None:intergenic | 50.0% | |
| ATGGACAAGTACGGAGACAG+TGG | - | chr8.3:5599445-5599464 | MS.gene030139:intron | 50.0% | |
| CGAGAGAGATGAGAACAGTG+AGG | - | chr8.3:5599298-5599317 | MS.gene030139:CDS | 50.0% | |
| CGTCGAGAACAAAAGAGGGT+TGG | - | chr8.3:5599348-5599367 | MS.gene030139:CDS | 50.0% | |
| GAAAGAACATGCCAGCGAAG+GGG | - | chr8.3:5601322-5601341 | MS.gene030139:intron | 50.0% | |
| GACAACGTCGAATACTGGTG+CGG | + | chr8.3:5601637-5601656 | None:intergenic | 50.0% | |
| GACACAGGTTGTGATGCACT+TGG | + | chr8.3:5600749-5600768 | None:intergenic | 50.0% | |
| GACGACAATGGTGACAACGA+TGG | + | chr8.3:5601610-5601629 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+AGG | - | chr8.3:5599562-5599581 | MS.gene030139:CDS | 50.0% | |
| GATGAGAACAGTGAGGACGA+AGG | - | chr8.3:5599305-5599324 | MS.gene030139:CDS | 50.0% | |
| GGAGAGACAACGTCGAATAC+TGG | + | chr8.3:5601642-5601661 | None:intergenic | 50.0% | |
| GGAGGAAATTTCCACTGGAG+TGG | + | chr8.3:5601355-5601374 | None:intergenic | 50.0% | |
| GGATGTGAACTCGACACAAC+CGG | + | chr8.3:5602879-5602898 | None:intergenic | 50.0% | |
| GGGAAGCCAGAACGTGAAAA+GGG | + | chr8.3:5601483-5601502 | None:intergenic | 50.0% | |
| GTCGACGTCGAGAACAAAAG+AGG | - | chr8.3:5599343-5599362 | MS.gene030139:CDS | 50.0% | |
| GTTGTGATGCACTTGGTACG+TGG | + | chr8.3:5600742-5600761 | None:intergenic | 50.0% | |
| TGCACCACAAGCTATCTCCA+TGG | - | chr8.3:5602152-5602171 | MS.gene030139:intron | 50.0% | |
| TGGCAGTGACAGATGCTAGA+GGG | - | chr8.3:5599474-5599493 | MS.gene030139:intron | 50.0% | |
| ! | AGCACAGCGGTGCTAATCAA+TGG | + | chr8.3:5601578-5601597 | None:intergenic | 50.0% |
| ! | CGGTGCTAATCAATGGAGCA+GGG | + | chr8.3:5601571-5601590 | None:intergenic | 50.0% |
| ! | GAACAAAAGAGGGTTGGCGA+TGG | - | chr8.3:5599354-5599373 | MS.gene030139:CDS | 50.0% |
| !! | GTTGGTGGTAGAGAGAACCT+TGG | - | chr8.3:5602630-5602649 | MS.gene030139:intron | 50.0% |
| AAGTACGGAGACAGTGGTGG+CGG | - | chr8.3:5599451-5599470 | MS.gene030139:intron | 55.0% | |
| AATGGCCTCCTCAAGCGCAA+CGG | - | chr8.3:5603104-5603123 | MS.gene030139:CDS | 55.0% | |
| ACGACGACGGTTGAGAGAGA+GGG | - | chr8.3:5599390-5599409 | MS.gene030139:intron | 55.0% | |
| CAGAACGTGAAAAGGGAGGG+AGG | + | chr8.3:5601476-5601495 | None:intergenic | 55.0% | |
| GAACCTTGGTTACACACGCG+TGG | - | chr8.3:5602644-5602663 | MS.gene030139:intron | 55.0% | |
| GACAAGTACGGAGACAGTGG+TGG | - | chr8.3:5599448-5599467 | MS.gene030139:intron | 55.0% | |
| GAGAAACATGGCATACGGGG+AGG | - | chr8.3:5602698-5602717 | MS.gene030139:intron | 55.0% | |
| GATCCACGCGTGTGTAACCA+AGG | + | chr8.3:5602650-5602669 | None:intergenic | 55.0% | |
| GCAAGCATGTGAGTCGTCTC+AGG | + | chr8.3:5602510-5602529 | None:intergenic | 55.0% | |
| GCAGTGACAGATGCTAGAGG+GGG | - | chr8.3:5599476-5599495 | MS.gene030139:intron | 55.0% | |
| GCATGTGAGTCGTCTCAGGA+AGG | + | chr8.3:5602506-5602525 | None:intergenic | 55.0% | |
| GGCAGTGACAGATGCTAGAG+GGG | - | chr8.3:5599475-5599494 | MS.gene030139:intron | 55.0% | |
| GGGGAAGCCAGAACGTGAAA+AGG | + | chr8.3:5601484-5601503 | None:intergenic | 55.0% | |
| GTGGCAGTGACAGATGCTAG+AGG | - | chr8.3:5599473-5599492 | MS.gene030139:intron | 55.0% | |
| GTTGAGAGAGAGGGGAGAGA+AGG | - | chr8.3:5599399-5599418 | MS.gene030139:intron | 55.0% | |
| TGACAGATGCTAGAGGGGGA+GGG | - | chr8.3:5599480-5599499 | MS.gene030139:intron | 55.0% | |
| ! | CAAAAGAGGGTTGGCGATGG+TGG | - | chr8.3:5599357-5599376 | MS.gene030139:CDS | 55.0% |
| ! | CTCCCTCCCTTTTCACGTTC+TGG | - | chr8.3:5601474-5601493 | MS.gene030139:intron | 55.0% |
| ! | GCGGTGCTAATCAATGGAGC+AGG | + | chr8.3:5601572-5601591 | None:intergenic | 55.0% |
| AACATGCCAGCGAAGGGGAG+AGG | - | chr8.3:5601327-5601346 | MS.gene030139:intron | 60.0% | |
| AACATGGCATACGGGGAGGC+TGG | - | chr8.3:5602702-5602721 | MS.gene030139:intron | 60.0% | |
| ACAGATGCTAGAGGGGGAGG+GGG | - | chr8.3:5599482-5599501 | MS.gene030139:CDS | 60.0% | |
| ATGGCCTCCTCAAGCGCAAC+GGG | - | chr8.3:5603105-5603124 | MS.gene030139:CDS | 60.0% | |
| CGACGACGGTTGAGAGAGAG+GGG | - | chr8.3:5599391-5599410 | MS.gene030139:intron | 60.0% | |
| CGACGGCAGGGTGAGTTCTA+TGG | - | chr8.3:5599426-5599445 | MS.gene030139:intron | 60.0% | |
| CTCCTCAAGCGCAACGGGAT+CGG | - | chr8.3:5603110-5603129 | MS.gene030139:CDS | 60.0% | |
| GACAGATGCTAGAGGGGGAG+GGG | - | chr8.3:5599481-5599500 | MS.gene030139:intron | 60.0% | |
| GACGACGACGGTTGAGAGAG+AGG | - | chr8.3:5599389-5599408 | MS.gene030139:intron | 60.0% | |
| GAGAGAGAGGGGAGAGAAGG+CGG | - | chr8.3:5599402-5599421 | MS.gene030139:intron | 60.0% | |
| GTGACAGATGCTAGAGGGGG+AGG | - | chr8.3:5599479-5599498 | MS.gene030139:intron | 60.0% | |
| TCCTCAAGCGCAACGGGATC+GGG | - | chr8.3:5603111-5603130 | MS.gene030139:CDS | 60.0% | |
| TGGTGCGGAGACGACGACAA+TGG | + | chr8.3:5601622-5601641 | None:intergenic | 60.0% | |
| !! | GGGGTGCTGGTGAGGAGAAA+AGG | - | chr8.3:5599501-5599520 | MS.gene030139:CDS | 60.0% |
| !! | GTTGGCGATGGTGGAGCAGA+GGG | - | chr8.3:5599366-5599385 | MS.gene030139:CDS | 60.0% |
| !! | TTGGCGATGGTGGAGCAGAG+GGG | - | chr8.3:5599367-5599386 | MS.gene030139:CDS | 60.0% |
| AGAGAAGGCGGACGACGGCA+GGG | - | chr8.3:5599414-5599433 | MS.gene030139:intron | 65.0% | |
| AGGGGAGAGAAGGCGGACGA+CGG | - | chr8.3:5599409-5599428 | MS.gene030139:intron | 65.0% | |
| CGATCCCGTTGCGCTTGAGG+AGG | + | chr8.3:5603112-5603131 | None:intergenic | 65.0% | |
| GGGGAGAGGATCCACTCCAG+TGG | - | chr8.3:5601341-5601360 | MS.gene030139:intron | 65.0% | |
| GTGGATCCTCTCCCCTTCGC+TGG | + | chr8.3:5601336-5601355 | None:intergenic | 65.0% | |
| TCCCGATCCCGTTGCGCTTG+AGG | + | chr8.3:5603115-5603134 | None:intergenic | 65.0% | |
| TGGAGCAGAGGGGACGACGA+CGG | - | chr8.3:5599377-5599396 | MS.gene030139:intron | 65.0% | |
| !! | GGTTGGCGATGGTGGAGCAG+AGG | - | chr8.3:5599365-5599384 | MS.gene030139:CDS | 65.0% |
| !! | TACGGAGACAGTGGTGGCGG+TGG | - | chr8.3:5599454-5599473 | MS.gene030139:intron | 65.0% |
| GAGAGAAGGCGGACGACGGC+AGG | - | chr8.3:5599413-5599432 | MS.gene030139:intron | 70.0% | |
| ! | GCTAGAGGGGGAGGGGGTGC+TGG | - | chr8.3:5599488-5599507 | MS.gene030139:CDS | 75.0% |
| !! | AGGGGGAGGGGGTGCTGGTG+AGG | - | chr8.3:5599493-5599512 | MS.gene030139:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 5599285 | 5603141 | 5599285 | ID=MS.gene030139 |
| chr8.3 | mRNA | 5599285 | 5603141 | 5599285 | ID=MS.gene030139.t1;Parent=MS.gene030139 |
| chr8.3 | exon | 5602991 | 5603141 | 5602991 | ID=MS.gene030139.t1.exon1;Parent=MS.gene030139.t1 |
| chr8.3 | CDS | 5602991 | 5603141 | 5602991 | ID=cds.MS.gene030139.t1;Parent=MS.gene030139.t1 |
| chr8.3 | exon | 5600703 | 5600840 | 5600703 | ID=MS.gene030139.t1.exon2;Parent=MS.gene030139.t1 |
| chr8.3 | CDS | 5600703 | 5600840 | 5600703 | ID=cds.MS.gene030139.t1;Parent=MS.gene030139.t1 |
| chr8.3 | exon | 5599482 | 5600263 | 5599482 | ID=MS.gene030139.t1.exon3;Parent=MS.gene030139.t1 |
| chr8.3 | CDS | 5599482 | 5600263 | 5599482 | ID=cds.MS.gene030139.t1;Parent=MS.gene030139.t1 |
| chr8.3 | exon | 5599285 | 5599392 | 5599285 | ID=MS.gene030139.t1.exon4;Parent=MS.gene030139.t1 |
| chr8.3 | CDS | 5599285 | 5599392 | 5599285 | ID=cds.MS.gene030139.t1;Parent=MS.gene030139.t1 |
| Gene Sequence |
| Protein sequence |
