AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030246

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030246.t1 MTR_0402s0040 57.286 199 57 1 30 200 2 200 1.84e-69 227
MS.gene030246.t1 MTR_0137s0040 61.594 138 28 1 19 156 1 113 4.29e-49 162
MS.gene030246.t1 MTR_5g015480 54.598 174 44 3 10 154 18 185 1.49e-48 166
MS.gene030246.t1 MTR_1g086270 81.707 82 15 0 320 401 1 82 1.39e-44 150
MS.gene030246.t1 MTR_6g017200 62.069 116 40 1 20 131 20 135 4.01e-42 145
MS.gene030246.t1 MTR_1g057920 65.138 109 38 0 23 131 3 111 9.27e-42 143
MS.gene030246.t1 MTR_2g070590 66.667 90 30 0 42 131 5 94 3.64e-35 126
MS.gene030246.t1 MTR_6g051425 29.739 306 159 7 61 319 24 320 3.99e-35 132
MS.gene030246.t1 MTR_0558s0020 31.579 247 121 7 68 266 50 296 2.70e-30 118
MS.gene030246.t1 MTR_7g113010 45.000 160 45 2 20 150 423 568 1.06e-28 118
MS.gene030246.t1 MTR_7g074790 41.290 155 80 3 51 195 7 160 1.08e-26 107
MS.gene030246.t1 MTR_8g446020 36.691 139 87 1 129 266 118 256 1.39e-25 104
MS.gene030246.t1 MTR_1g070355 30.992 242 130 6 53 260 71 309 4.65e-25 107
MS.gene030246.t1 MTR_6g090505 39.130 138 83 1 129 265 93 230 1.24e-24 104
MS.gene030246.t1 MTR_4g102720 38.732 142 80 2 51 192 4 138 1.65e-24 100
MS.gene030246.t1 MTR_0291s0060 61.644 73 28 0 32 104 13 85 1.95e-23 94.0
MS.gene030246.t1 MTR_4g035820 28.522 291 155 10 25 270 42 324 2.71e-19 90.5
MS.gene030246.t1 MTR_5g039760 32.979 188 103 5 48 221 4 182 2.10e-18 83.2
MS.gene030246.t1 MTR_1g091013 67.857 56 18 0 67 122 14 69 6.67e-17 75.1
MS.gene030246.t1 MTR_4g067290 44.086 93 48 2 41 130 40 131 3.59e-16 77.8
MS.gene030246.t1 MTR_4g067290 44.086 93 48 2 41 130 40 131 3.68e-16 77.8
MS.gene030246.t1 MTR_4g067290 44.086 93 48 2 41 130 60 151 5.53e-16 77.8
MS.gene030246.t1 MTR_4g067290 44.086 93 48 2 41 130 60 151 5.58e-16 77.8
MS.gene030246.t1 MTR_4g067290 44.086 93 48 2 41 130 58 149 5.90e-16 77.4
MS.gene030246.t1 MTR_4g067290 44.086 93 48 2 41 130 100 191 6.46e-16 78.2
MS.gene030246.t1 MTR_1g083640 26.778 239 122 8 52 237 44 282 7.87e-16 77.8
MS.gene030246.t1 MTR_7g446520 29.060 234 141 6 57 271 91 318 1.71e-15 77.4
MS.gene030246.t1 MTR_2g098920 46.753 77 40 1 54 130 80 155 8.16e-15 74.3
MS.gene030246.t1 MTR_7g446480 29.817 218 123 6 57 272 123 312 1.60e-12 68.2
MS.gene030246.t1 MTR_7g446510 32.168 143 94 2 133 273 187 328 2.25e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030246.t1 AT4G38180 35.969 392 215 6 42 398 58 448 1.57e-76 253
MS.gene030246.t1 AT4G15090 29.412 374 235 3 50 394 47 420 1.08e-53 191
MS.gene030246.t1 AT4G15090 29.412 374 235 3 50 394 47 420 1.08e-53 191
MS.gene030246.t1 AT4G15090 29.412 374 235 3 50 394 47 420 1.08e-53 191
MS.gene030246.t1 AT4G15090 29.412 374 235 3 50 394 47 420 1.08e-53 191
MS.gene030246.t1 AT4G15090 29.412 374 235 3 50 394 47 420 1.08e-53 191
MS.gene030246.t1 AT3G22170 30.105 382 238 8 49 403 59 438 1.74e-50 182
MS.gene030246.t1 AT3G22170 30.105 382 238 8 49 403 59 438 1.74e-50 182
MS.gene030246.t1 AT1G76320 31.383 376 208 9 58 398 1 361 2.08e-49 177
MS.gene030246.t1 AT1G76320 31.383 376 208 9 58 398 1 361 4.18e-49 177
MS.gene030246.t1 AT1G76320 31.383 376 208 9 58 398 1 361 4.18e-49 177
MS.gene030246.t1 AT1G76320 31.383 376 208 9 58 398 1 361 4.28e-49 177
MS.gene030246.t1 AT3G06250 30.812 357 220 6 54 403 190 526 7.64e-49 177
MS.gene030246.t1 AT3G06250 30.812 357 220 6 54 403 190 526 7.64e-49 177
MS.gene030246.t1 AT3G06250 30.812 357 220 6 54 403 190 526 7.64e-49 177
MS.gene030246.t1 AT2G32250 29.060 351 225 7 58 403 42 373 4.50e-44 163
MS.gene030246.t1 AT2G32250 29.060 351 225 7 58 403 1 332 4.64e-44 163
MS.gene030246.t1 AT5G18960 30.084 359 221 8 54 402 211 549 5.28e-44 163
MS.gene030246.t1 AT5G18960 30.084 359 221 8 54 402 211 549 5.28e-44 163
MS.gene030246.t1 AT2G32250 29.060 351 225 7 58 403 1 332 5.48e-44 163
MS.gene030246.t1 AT2G27110 29.539 369 224 7 54 403 49 400 5.60e-44 164
MS.gene030246.t1 AT2G27110 29.539 369 224 7 54 403 49 400 5.60e-44 164
MS.gene030246.t1 AT2G32250 29.060 351 225 7 58 403 42 373 5.62e-44 163
MS.gene030246.t1 AT2G32250 29.060 351 225 7 58 403 42 373 5.62e-44 163
MS.gene030246.t1 AT2G32250 29.060 351 225 7 58 403 42 373 6.18e-44 163
MS.gene030246.t1 AT2G32250 29.060 351 225 7 58 403 42 373 6.18e-44 163
MS.gene030246.t1 AT2G32250 29.060 351 225 7 58 403 42 373 6.18e-44 163
MS.gene030246.t1 AT1G10240 27.711 332 202 5 45 340 39 368 2.54e-40 152
MS.gene030246.t1 AT1G10240 27.711 332 202 5 45 340 39 368 2.54e-40 152
MS.gene030246.t1 AT2G27110 34.826 201 130 1 204 403 55 255 2.85e-38 146
MS.gene030246.t1 AT5G28530 25.829 422 251 12 35 399 37 453 5.81e-36 140
MS.gene030246.t1 AT5G28530 25.829 422 251 12 35 399 37 453 6.22e-36 139
MS.gene030246.t1 AT5G28530 25.829 422 251 12 35 399 37 453 6.22e-36 139
MS.gene030246.t1 AT1G80010 27.806 392 227 7 54 402 95 473 4.18e-35 137
MS.gene030246.t1 AT4G19990 26.849 365 232 6 59 402 40 390 1.57e-33 133
MS.gene030246.t1 AT4G19990 26.849 365 232 6 59 402 26 376 1.63e-33 133
MS.gene030246.t1 AT4G19990 26.849 365 232 6 59 402 26 376 1.80e-33 132
MS.gene030246.t1 AT4G19990 26.849 365 232 6 59 402 26 376 1.80e-33 132
MS.gene030246.t1 AT4G19990 26.849 365 232 6 59 402 26 376 2.02e-33 132
MS.gene030246.t1 AT4G19990 26.849 365 232 6 59 402 26 376 2.02e-33 132
MS.gene030246.t1 AT4G38170 34.158 202 127 3 204 403 21 218 1.21e-32 129
MS.gene030246.t1 AT1G52520 28.117 377 234 9 53 403 84 449 1.10e-29 121
MS.gene030246.t1 AT4G19990 26.911 327 208 7 85 402 15 319 1.17e-25 109
MS.gene030246.t1 AT3G59470 49.351 77 38 1 54 130 70 145 6.29e-15 74.7
MS.gene030246.t1 AT3G59470 49.351 77 38 1 54 130 70 145 6.29e-15 74.7
MS.gene030246.t1 AT3G59470 49.351 77 38 1 54 130 82 157 7.89e-15 74.3

Find 71 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAAGTTTCTTGGCTATT+TGG 0.127787 8.2:+8275477 None:intergenic
ATAAACGATTATGGATATTT+TGG 0.203454 8.2:-8274799 MS.gene030246:CDS
AGCAAATAACAAATATCTTT+TGG 0.204370 8.2:-8274837 MS.gene030246:CDS
TTGAAATTGATGGCTCATTA+AGG 0.253482 8.2:+8275550 None:intergenic
AGAATTTCCTTCGAACTAAA+AGG 0.257081 8.2:-8274963 MS.gene030246:CDS
TGTTGAAGGTGTAGAGAAAT+TGG 0.264261 8.2:-8275526 MS.gene030246:CDS
AGCAGAAATGGGAGCTCTTT+TGG 0.284940 8.2:+8274461 None:intergenic
TTTGGTATTCGTCGAGAATA+TGG 0.306820 8.2:-8275369 MS.gene030246:CDS
GTTATGCCTCAAACATTTCA+TGG 0.308775 8.2:-8274538 MS.gene030246:CDS
TAGTTCGAAGGAAATTCTTA+TGG 0.319083 8.2:+8274968 None:intergenic
TATAATCTACAAAAGTTTCT+TGG 0.325632 8.2:+8275469 None:intergenic
CCTTCAACAATTGAAATTGA+TGG 0.337251 8.2:+8275540 None:intergenic
GCACAGATGATAAACGATTA+TGG 0.341323 8.2:-8274808 MS.gene030246:CDS
AATGAGTATAGCAGGAGAAT+TGG 0.360693 8.2:-8275393 MS.gene030246:CDS
TGGCAAAATACTTTCATGAA+TGG 0.373730 8.2:+8275497 None:intergenic
CTTCAAAATCCGAGCAGAAA+TGG 0.375608 8.2:+8274449 None:intergenic
ACGTGCTTTACACCCAGTTC+TGG 0.377947 8.2:+8275233 None:intergenic
AAACAATTCCTTCCTTTCAA+TGG 0.386086 8.2:-8274654 MS.gene030246:CDS
CGACCATTGGGAGTATTTGT+TGG 0.391913 8.2:-8274730 MS.gene030246:CDS
GTCTATTCCACCAACTTGCT+TGG 0.399516 8.2:+8275014 None:intergenic
ATAGGTGGTTCACATGCCTT+AGG 0.401174 8.2:+8274485 None:intergenic
TACAACATACAAGACAAATA+AGG 0.410215 8.2:-8274758 MS.gene030246:CDS
AAAATCCTTTGGCTTTAATC+CGG 0.414261 8.2:+8275050 None:intergenic
ATACTCATTATAAAATTCAT+AGG 0.433466 8.2:+8275407 None:intergenic
TTCAAAATCCGAGCAGAAAT+GGG 0.435563 8.2:+8274450 None:intergenic
ACATACTCATGAAAATCCTT+TGG 0.439521 8.2:+8275039 None:intergenic
TCTAGAGCAGAAACCAGAAC+TGG 0.439558 8.2:-8275246 MS.gene030246:CDS
TTATACACCACACTTGGAAA+TGG 0.441214 8.2:-8275451 MS.gene030246:CDS
TATAGCAGGAGAATTGGATT+TGG 0.445248 8.2:-8275387 MS.gene030246:CDS
ACCACCTCTTTGTCATTCCA+CGG 0.452949 8.2:-8275746 MS.gene030246:CDS
CCATCAATTTCAATTGTTGA+AGG 0.458479 8.2:-8275540 MS.gene030246:CDS
AGGTGGTGGACGGCCAGAAT+TGG 0.466416 8.2:+8275762 None:intergenic
AAGATGGAGAAAACCAATTC+TGG 0.469862 8.2:-8275775 MS.gene030246:CDS
TCAAATAACCATTGAAAGGA+AGG 0.471148 8.2:+8274646 None:intergenic
TGAAAGTCATAAAAGAAAGA+AGG 0.477032 8.2:+8274874 None:intergenic
CATTTCATGGACTATGCACT+TGG 0.490965 8.2:-8274525 MS.gene030246:CDS
AAGATTCTCGTGCTTTAAAG+AGG 0.497851 8.2:-8275310 MS.gene030246:CDS
GTTGGTGGAATAGACATAGT+TGG 0.498391 8.2:-8275006 MS.gene030246:CDS
AATAAGGATTATCGACCATT+GGG 0.502732 8.2:-8274742 MS.gene030246:CDS
AAATAAGGATTATCGACCAT+TGG 0.506629 8.2:-8274743 MS.gene030246:CDS
ATAATGTTTCTGATGATTCG+TGG 0.513389 8.2:-8274360 MS.gene030246:CDS
CATAGTCCATGAAATGTTTG+AGG 0.517904 8.2:+8274532 None:intergenic
TGTAGATTATACACCACACT+TGG 0.533801 8.2:-8275457 MS.gene030246:CDS
TCACTGAGGTATGGTGAAGT+AGG 0.535157 8.2:-8274934 MS.gene030246:CDS
AAGATGAATTTCTGAACGCA+TGG 0.536411 8.2:-8274402 MS.gene030246:CDS
ATTGTGTTGGCTGATGAATC+CGG 0.546006 8.2:-8275069 MS.gene030246:CDS
AGGAATCATTCACTGAGGTA+TGG 0.556258 8.2:-8274943 MS.gene030246:CDS
TAGGTGGTTCACATGCCTTA+GGG 0.559416 8.2:+8274486 None:intergenic
AACAGATCAAAATGCAGCAA+TGG 0.565858 8.2:-8274578 MS.gene030246:CDS
GGAAATGGAGTTTGAATCTG+AGG 0.566587 8.2:-8275436 MS.gene030246:CDS
CCACCTCTTTGTCATTCCAC+GGG 0.567560 8.2:-8275745 MS.gene030246:intron
GCATTATTGATGTATTTCAA+AGG 0.569965 8.2:-8274910 MS.gene030246:CDS
AAAGAGCTCCCATTTCTGCT+CGG 0.571791 8.2:-8274458 MS.gene030246:CDS
TCAAACTCCATTTCCAAGTG+TGG 0.576119 8.2:+8275444 None:intergenic
AGTTTCAAATAACCATTGAA+AGG 0.585078 8.2:+8274642 None:intergenic
TCAAAATGCAGCAATGGCAA+AGG 0.593305 8.2:-8274572 MS.gene030246:CDS
AGATTCTCGTGCTTTAAAGA+GGG 0.598984 8.2:-8275309 MS.gene030246:CDS
GTGGAATGACAAAGAGGTGG+TGG 0.601159 8.2:+8275748 None:intergenic
ACAAGCATCACAAATTGTGT+TGG 0.607468 8.2:-8275082 MS.gene030246:CDS
TAGACATAGTTGGTTATACA+AGG 0.611692 8.2:-8274996 MS.gene030246:CDS
TGCTTTAAAGAGGGAAAGCG+AGG 0.618222 8.2:-8275300 MS.gene030246:CDS
TATGTGTCCAAGCAAGTTGG+TGG 0.620761 8.2:-8275021 MS.gene030246:CDS
AGTCCAACAAATACTCCCAA+TGG 0.630456 8.2:+8274727 None:intergenic
CTAGAGCAGAAACCAGAACT+GGG 0.631153 8.2:-8275245 MS.gene030246:CDS
ATATAAGAGAAAATGCCCTA+AGG 0.636935 8.2:-8274501 MS.gene030246:CDS
TGAATCCGGATTAAAGCCAA+AGG 0.646687 8.2:-8275055 MS.gene030246:CDS
AATGACAAAGAGGTGGTGGA+CGG 0.652235 8.2:+8275752 None:intergenic
TTACCCGTGGAATGACAAAG+AGG 0.668554 8.2:+8275742 None:intergenic
CCCGTGGAATGACAAAGAGG+TGG 0.685949 8.2:+8275745 None:intergenic
GAGTATGTGTCCAAGCAAGT+TGG 0.694904 8.2:-8275024 MS.gene030246:CDS
CTAAAAGGAATCATTCACTG+AGG 0.744388 8.2:-8274948 MS.gene030246:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTCATTATAAAATTCAT+AGG + chr8.2:8274695-8274714 None:intergenic 15.0%
!! TTTGTAGTATTAATTAAAAG+AGG + chr8.2:8274465-8274484 None:intergenic 15.0%
!! ATTTCACTTGATTGAAAAAT+TGG - chr8.2:8274895-8274914 MS.gene030246:CDS 20.0%
!! TATAATCTACAAAAGTTTCT+TGG + chr8.2:8274633-8274652 None:intergenic 20.0%
!! TTGAAAAATTGGAAAATACA+AGG - chr8.2:8274906-8274925 MS.gene030246:CDS 20.0%
!!! AATAAGTATTTTGTTAAACC+AGG + chr8.2:8274407-8274426 None:intergenic 20.0%
!!! AATTTTATAATGAGTATAGC+AGG - chr8.2:8274698-8274717 MS.gene030246:CDS 20.0%
!!! AGCAAATAACAAATATCTTT+TGG - chr8.2:8275262-8275281 MS.gene030246:CDS 20.0%
!!! ATAAACGATTATGGATATTT+TGG - chr8.2:8275300-8275319 MS.gene030246:CDS 20.0%
!!! GCAAATAACAAATATCTTTT+GGG - chr8.2:8275263-8275282 MS.gene030246:CDS 20.0%
!!! TTTCTTTTATGACTTTCAAA+TGG - chr8.2:8275230-8275249 MS.gene030246:intron 20.0%
! AGTTTCAAATAACCATTGAA+AGG + chr8.2:8275460-8275479 None:intergenic 25.0%
! GCATTATTGATGTATTTCAA+AGG - chr8.2:8275189-8275208 MS.gene030246:intron 25.0%
! GTAGTATTAATTAAAAGAGG+AGG + chr8.2:8274462-8274481 None:intergenic 25.0%
! TACAACATACAAGACAAATA+AGG - chr8.2:8275341-8275360 MS.gene030246:CDS 25.0%
! TGAAAGTCATAAAAGAAAGA+AGG + chr8.2:8275228-8275247 None:intergenic 25.0%
!! AATAACAAATATCTTTTGGG+CGG - chr8.2:8275266-8275285 MS.gene030246:CDS 25.0%
AAACAATTCCTTCCTTTCAA+TGG - chr8.2:8275445-8275464 MS.gene030246:CDS 30.0%
AAATAAGGATTATCGACCAT+TGG - chr8.2:8275356-8275375 MS.gene030246:CDS 30.0%
AATAAGGATTATCGACCATT+GGG - chr8.2:8275357-8275376 MS.gene030246:CDS 30.0%
ACAAAAGTTTCTTGGCTATT+TGG + chr8.2:8274625-8274644 None:intergenic 30.0%
ACATACTCATGAAAATCCTT+TGG + chr8.2:8275063-8275082 None:intergenic 30.0%
AGAATTTCCTTCGAACTAAA+AGG - chr8.2:8275136-8275155 MS.gene030246:intron 30.0%
ATATAAGAGAAAATGCCCTA+AGG - chr8.2:8275598-8275617 MS.gene030246:intron 30.0%
CACTCATTATTATTGAAACC+TGG - chr8.2:8274386-8274405 MS.gene030246:CDS 30.0%
CCATCAATTTCAATTGTTGA+AGG - chr8.2:8274559-8274578 MS.gene030246:CDS 30.0%
CCTTCAACAATTGAAATTGA+TGG + chr8.2:8274562-8274581 None:intergenic 30.0%
GGCAATAAAAGCAAAAAAGA+CGG - chr8.2:8274751-8274770 MS.gene030246:CDS 30.0%
TAGACATAGTTGGTTATACA+AGG - chr8.2:8275103-8275122 MS.gene030246:CDS 30.0%
TAGTTCGAAGGAAATTCTTA+TGG + chr8.2:8275134-8275153 None:intergenic 30.0%
TCAAATAACCATTGAAAGGA+AGG + chr8.2:8275456-8275475 None:intergenic 30.0%
TGGCAAAATACTTTCATGAA+TGG + chr8.2:8274605-8274624 None:intergenic 30.0%
TGGGAAAAATATTGAGTCAA+CGG + chr8.2:8274524-8274543 None:intergenic 30.0%
! ATAATGTTTCTGATGATTCG+TGG - chr8.2:8275739-8275758 MS.gene030246:intron 30.0%
! GAAACTTTTCTCAAAGCAAT+GGG - chr8.2:8275474-8275493 MS.gene030246:CDS 30.0%
! TGAAACTTTTCTCAAAGCAA+TGG - chr8.2:8275473-8275492 MS.gene030246:CDS 30.0%
! TGATCTGTTAACATGGTTTT+TGG + chr8.2:8275510-8275529 None:intergenic 30.0%
! TTGAAATTGATGGCTCATTA+AGG + chr8.2:8274552-8274571 None:intergenic 30.0%
!! AAAATCCTTTGGCTTTAATC+CGG + chr8.2:8275052-8275071 None:intergenic 30.0%
!! TGCATTTTGATCTGTTAACA+TGG + chr8.2:8275517-8275536 None:intergenic 30.0%
!!! AATGATTCCTTTTAGTTCGA+AGG + chr8.2:8275146-8275165 None:intergenic 30.0%
!!! TCAGACAAACTGTTGTTTTT+GGG - chr8.2:8275403-8275422 MS.gene030246:CDS 30.0%
!!! TTCAGACAAACTGTTGTTTT+TGG - chr8.2:8275402-8275421 MS.gene030246:CDS 30.0%
AACAGATCAAAATGCAGCAA+TGG - chr8.2:8275521-8275540 MS.gene030246:CDS 35.0%
AAGATGAATTTCTGAACGCA+TGG - chr8.2:8275697-8275716 MS.gene030246:intron 35.0%
AATGAGTATAGCAGGAGAAT+TGG - chr8.2:8274706-8274725 MS.gene030246:CDS 35.0%
ACAAGCATCACAAATTGTGT+TGG - chr8.2:8275017-8275036 MS.gene030246:CDS 35.0%
CATAGTCCATGAAATGTTTG+AGG + chr8.2:8275570-8275589 None:intergenic 35.0%
CTAAAAGGAATCATTCACTG+AGG - chr8.2:8275151-8275170 MS.gene030246:intron 35.0%
GCACAGATGATAAACGATTA+TGG - chr8.2:8275291-8275310 MS.gene030246:CDS 35.0%
GTTATGCCTCAAACATTTCA+TGG - chr8.2:8275561-8275580 MS.gene030246:intron 35.0%
TATAGCAGGAGAATTGGATT+TGG - chr8.2:8274712-8274731 MS.gene030246:CDS 35.0%
TGTAGATTATACACCACACT+TGG - chr8.2:8274642-8274661 MS.gene030246:CDS 35.0%
TTATACACCACACTTGGAAA+TGG - chr8.2:8274648-8274667 MS.gene030246:CDS 35.0%
TTCAAAATCCGAGCAGAAAT+GGG + chr8.2:8275652-8275671 None:intergenic 35.0%
TTTGGTATTCGTCGAGAATA+TGG - chr8.2:8274730-8274749 MS.gene030246:CDS 35.0%
! TGTTGAAGGTGTAGAGAAAT+TGG - chr8.2:8274573-8274592 MS.gene030246:CDS 35.0%
!! AAGATTCTCGTGCTTTAAAG+AGG - chr8.2:8274789-8274808 MS.gene030246:CDS 35.0%
!! AGATTCTCGTGCTTTAAAGA+GGG - chr8.2:8274790-8274809 MS.gene030246:CDS 35.0%
!! GTTGACTCAATATTTTTCCC+AGG - chr8.2:8274523-8274542 MS.gene030246:CDS 35.0%
!!! CAGACAAACTGTTGTTTTTG+GGG - chr8.2:8275404-8275423 MS.gene030246:CDS 35.0%
!!! GCATTCAATTTTTCGAGTGA+AGG - chr8.2:8275764-8275783 MS.gene030246:CDS 35.0%
AGGAATCATTCACTGAGGTA+TGG - chr8.2:8275156-8275175 MS.gene030246:intron 40.0%
AGTCCAACAAATACTCCCAA+TGG + chr8.2:8275375-8275394 None:intergenic 40.0%
ATGAGTGAATTTCTTACCCG+TGG + chr8.2:8274373-8274392 None:intergenic 40.0%
ATGGCTCATTAAGGTTTCCT+GGG + chr8.2:8274543-8274562 None:intergenic 40.0%
CTTCAAAATCCGAGCAGAAA+TGG + chr8.2:8275653-8275672 None:intergenic 40.0%
GGAAATGGAGTTTGAATCTG+AGG - chr8.2:8274663-8274682 MS.gene030246:CDS 40.0%
TCAAAATGCAGCAATGGCAA+AGG - chr8.2:8275527-8275546 MS.gene030246:CDS 40.0%
TCAAACTCCATTTCCAAGTG+TGG + chr8.2:8274658-8274677 None:intergenic 40.0%
TGAATCCGGATTAAAGCCAA+AGG - chr8.2:8275044-8275063 MS.gene030246:CDS 40.0%
! AATGGGAGCTCTTTTGGTAT+AGG + chr8.2:8275635-8275654 None:intergenic 40.0%
! ACTTTTCTCAAAGCAATGGG+TGG - chr8.2:8275477-8275496 MS.gene030246:CDS 40.0%
! CATTTCATGGACTATGCACT+TGG - chr8.2:8275574-8275593 MS.gene030246:intron 40.0%
! CTCTAGACTCTTTTGTCAAG+TGG + chr8.2:8274840-8274859 None:intergenic 40.0%
! GTTGGTGGAATAGACATAGT+TGG - chr8.2:8275093-8275112 MS.gene030246:CDS 40.0%
!! ATTGTGTTGGCTGATGAATC+CGG - chr8.2:8275030-8275049 MS.gene030246:CDS 40.0%
AAAGAGCTCCCATTTCTGCT+CGG - chr8.2:8275641-8275660 MS.gene030246:intron 45.0%
AACTGGGTGTAAAGCACGTA+TGG - chr8.2:8274870-8274889 MS.gene030246:CDS 45.0%
AATCACCTTCTTCAACCACC+AGG - chr8.2:8274952-8274971 MS.gene030246:CDS 45.0%
ACCACCTCTTTGTCATTCCA+CGG - chr8.2:8274353-8274372 MS.gene030246:CDS 45.0%
ATAGGTGGTTCACATGCCTT+AGG + chr8.2:8275617-8275636 None:intergenic 45.0%
ATCACCTTCTTCAACCACCA+GGG - chr8.2:8274953-8274972 MS.gene030246:CDS 45.0%
CTAGAGCAGAAACCAGAACT+GGG - chr8.2:8274854-8274873 MS.gene030246:CDS 45.0%
GAGTATGTGTCCAAGCAAGT+TGG - chr8.2:8275075-8275094 MS.gene030246:CDS 45.0%
GATGGCTCATTAAGGTTTCC+TGG + chr8.2:8274544-8274563 None:intergenic 45.0%
TAGGTGGTTCACATGCCTTA+GGG + chr8.2:8275616-8275635 None:intergenic 45.0%
TCACTGAGGTATGGTGAAGT+AGG - chr8.2:8275165-8275184 MS.gene030246:intron 45.0%
TTACCCGTGGAATGACAAAG+AGG + chr8.2:8274360-8274379 None:intergenic 45.0%
! AGCAGAAATGGGAGCTCTTT+TGG + chr8.2:8275641-8275660 None:intergenic 45.0%
! GTCTATTCCACCAACTTGCT+TGG + chr8.2:8275088-8275107 None:intergenic 45.0%
! TATGTGTCCAAGCAAGTTGG+TGG - chr8.2:8275078-8275097 MS.gene030246:CDS 45.0%
! TCTAGAGCAGAAACCAGAAC+TGG - chr8.2:8274853-8274872 MS.gene030246:CDS 45.0%
!! AATGACAAAGAGGTGGTGGA+CGG + chr8.2:8274350-8274369 None:intergenic 45.0%
!! CGACCATTGGGAGTATTTGT+TGG - chr8.2:8275369-8275388 MS.gene030246:CDS 45.0%
!! TGCTTTAAAGAGGGAAAGCG+AGG - chr8.2:8274799-8274818 MS.gene030246:CDS 45.0%
ACGTGCTTTACACCCAGTTC+TGG + chr8.2:8274869-8274888 None:intergenic 50.0%
ATCATATGAGCGTACCCTGG+TGG + chr8.2:8274970-8274989 None:intergenic 50.0%
CCACCTCTTTGTCATTCCAC+GGG - chr8.2:8274354-8274373 MS.gene030246:CDS 50.0%
CGAATCATATGAGCGTACCC+TGG + chr8.2:8274973-8274992 None:intergenic 50.0%
GTGGAATGACAAAGAGGTGG+TGG + chr8.2:8274354-8274373 None:intergenic 50.0%
! GGGAGCTCTTTTGGTATAGG+TGG + chr8.2:8275632-8275651 None:intergenic 50.0%
CCCGTGGAATGACAAAGAGG+TGG + chr8.2:8274357-8274376 None:intergenic 55.0%
CGTACCCTGGTGGTTGAAGA+AGG + chr8.2:8274960-8274979 None:intergenic 55.0%
!! AGGTGGTGGACGGCCAGAAT+TGG + chr8.2:8274340-8274359 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 8274327 8275794 8274327 ID=MS.gene030246
chr8.2 mRNA 8274327 8275794 8274327 ID=MS.gene030246.t1;Parent=MS.gene030246
chr8.2 exon 8275746 8275794 8275746 ID=MS.gene030246.t1.exon1;Parent=MS.gene030246.t1
chr8.2 CDS 8275746 8275794 8275746 ID=cds.MS.gene030246.t1;Parent=MS.gene030246.t1
chr8.2 exon 8275235 8275576 8275235 ID=MS.gene030246.t1.exon2;Parent=MS.gene030246.t1
chr8.2 CDS 8275235 8275576 8275235 ID=cds.MS.gene030246.t1;Parent=MS.gene030246.t1
chr8.2 exon 8274327 8275147 8274327 ID=MS.gene030246.t1.exon3;Parent=MS.gene030246.t1
chr8.2 CDS 8274327 8275147 8274327 ID=cds.MS.gene030246.t1;Parent=MS.gene030246.t1
Gene Sequence

>MS.gene030246

ATGGAGAAAACCAATTCTGGCCGTCCACCACCTCTTTGTCATTCCACGGGTAAGAAATTCACTCATTATTATTGAAACCTGGTTTAACAAAATACTTATTTCTCATTCTTTGATCACGTTTCTTGAAAAAATCCTCCTCTTTTAATTAATACTACAAAATTGCATTTGATTTTACTTGTTGTTTTTTTCGTTAACCGTTGACTCAATATTTTTCCCAGGAAACCTTAATGAGCCATCAATTTCAATTGTTGAAGGTGTAGAGAAATTGGTTAGTTCCATTCATGAAAGTATTTTGCCAAATAGCCAAGAAACTTTTGTAGATTATACACCACACTTGGAAATGGAGTTTGAATCTGAGGCAGCAGCCTATGAATTTTATAATGAGTATAGCAGGAGAATTGGATTTGGTATTCGTCGAGAATATGGCAATAAAAGCAAAAAAGACGGAATTCTGACTTCAAGAAGATTCTCGTGCTTTAAAGAGGGAAAGCGAGGTGATGACAAGCGAGACCACTTGACAAAAGAGTCTAGAGCAGAAACCAGAACTGGGTGTAAAGCACGTATGGTTATTTCACTTGATTGAAAAATTGGAAAATACAAGGTTGTCGACTTTGTATTTGAACATAATCACCTTCTTCAACCACCAGGGTACGCTCATATGATTCGCTCTCATCGACGCATATCTGAGTCACAAGCATCACAAATTGTGTTGGCTGATGAATCCGGATTAAAGCCAAAGGATTTTCATGAGTATGTGTCCAAGCAAGTTGGTGGAATAGACATAGTTGGTTATACAAGGCAAGACCATAAGAATTTCCTTCGAACTAAAAGGAATCATTCACTGAGGTATGGTGAAGTAGGTGCATTATTGATGTATTTCAAAGGACAAAGTGAAAATCCTTCTTTCTTTTATGACTTTCAAATGGATGTTGAAGAGCAAATAACAAATATCTTTTGGGCGGATGCACAGATGATAAACGATTATGGATATTTTGGTGATGTCATCACTTTTGATACAACATACAAGACAAATAAGGATTATCGACCATTGGGAGTATTTGTTGGACTGAATAACTTCAGACAAACTGTTGTTTTTGGGGCAACATTGCTGTATGATGAAACAATTCCTTCCTTTCAATGGTTATTTGAAACTTTTCTCAAAGCAATGGGTGGAGAAAAGCCAAAAACCATGTTAACAGATCAAAATGCAGCAATGGCAAAGGCTATTTCTCTAGTTATGCCTCAAACATTTCATGGACTATGCACTTGGCATATAAGAGAAAATGCCCTAAGGCATGTGAACCACCTATACCAAAAGAGCTCCCATTTCTGCTCGGATTTTGAAGCATGTATTGATCTACATGAAGAAGAAGATGAATTTCTGAACGCATGGAATGTTTTACTTCTTGAGCATAATGTTTCTGATGATTCGTGGCTGCATTCAATTTTTCGAGTGAAGGAAAAATAG
Protein sequence

>MS.gene030246.t1

MEKTNSGRPPPLCHSTGNLNEPSISIVEGVEKLVSSIHESILPNSQETFVDYTPHLEMEFESEAAAYEFYNEYSRRIGFGIRREYGNKSKKDGILTSRRFSCFKEGKRGDDKRDHLTKESRAETRTGCKARYAHMIRSHRRISESQASQIVLADESGLKPKDFHEYVSKQVGGIDIVGYTRQDHKNFLRTKRNHSLRYGEVGALLMYFKGQSENPSFFYDFQMDVEEQITNIFWADAQMINDYGYFGDVITFDTTYKTNKDYRPLGVFVGLNNFRQTVVFGATLLYDETIPSFQWLFETFLKAMGGEKPKTMLTDQNAAMAKAISLVMPQTFHGLCTWHIRENALRHVNHLYQKSSHFCSDFEACIDLHEEEDEFLNAWNVLLLEHNVSDDSWLHSIFRVKEK