AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030323

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030323.t1 MTR_6g090380 96.216 370 12 1 1 370 2 369 0.0 737
MS.gene030323.t1 MTR_8g102100 60.590 373 89 9 3 350 9 348 3.70e-146 419
MS.gene030323.t1 MTR_3g103960 47.351 302 99 13 75 370 23 270 1.45e-75 235
MS.gene030323.t1 MTR_2g090605 77.885 104 23 0 102 205 77 180 7.88e-61 201
MS.gene030323.t1 MTR_4g078660 67.742 124 37 1 85 205 40 163 4.40e-60 196
MS.gene030323.t1 MTR_7g092070 59.394 165 51 3 98 250 260 420 2.70e-58 201
MS.gene030323.t1 MTR_3g029590 56.098 164 61 4 98 250 260 423 3.47e-56 196
MS.gene030323.t1 MTR_5g071070 44.156 231 92 6 76 273 114 340 3.66e-54 188
MS.gene030323.t1 MTR_5g082830 47.393 211 86 5 97 285 212 419 8.85e-54 188
MS.gene030323.t1 MTR_5g071070 44.156 231 92 6 76 273 196 422 9.84e-54 189
MS.gene030323.t1 MTR_1g075890 69.159 107 33 0 98 204 225 331 4.65e-51 181
MS.gene030323.t1 MTR_1g050438 65.421 107 37 0 98 204 224 330 6.79e-50 176
MS.gene030323.t1 MTR_3g435680 67.290 107 35 0 98 204 147 253 1.23e-49 171
MS.gene030323.t1 MTR_0728s0020 65.421 107 37 0 98 204 240 346 1.24e-49 176
MS.gene030323.t1 MTR_3g070880 51.034 145 62 2 97 241 158 293 8.51e-48 169
MS.gene030323.t1 MTR_3g435590 49.068 161 73 3 98 252 234 391 9.44e-47 166
MS.gene030323.t1 MTR_3g464270 48.101 158 69 6 101 249 8 161 3.42e-39 143
MS.gene030323.t1 MTR_3g464260 52.000 125 50 2 133 250 212 333 2.95e-34 132
MS.gene030323.t1 MTR_3g464290 58.025 81 33 1 96 175 94 174 2.58e-29 118
MS.gene030323.t1 MTR_3g464280 29.389 262 125 7 71 315 149 367 8.59e-23 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030323.t1 AT4G29190 51.538 390 113 12 3 364 8 349 3.37e-117 344
MS.gene030323.t1 AT2G19810 52.329 365 114 9 5 350 11 334 2.03e-112 332
MS.gene030323.t1 AT2G25900 46.459 353 137 8 3 350 9 314 2.21e-90 274
MS.gene030323.t1 AT2G25900 46.459 353 137 8 3 350 9 314 2.21e-90 274
MS.gene030323.t1 AT1G03790 72.973 111 29 1 96 205 76 186 2.67e-58 194
MS.gene030323.t1 AT2G41900 75.701 107 26 0 98 204 257 363 4.05e-58 201
MS.gene030323.t1 AT5G44260 72.072 111 30 1 96 205 54 164 6.04e-57 190
MS.gene030323.t1 AT5G12850 56.875 160 62 1 98 250 253 412 1.38e-56 196
MS.gene030323.t1 AT5G58620 55.152 165 59 3 97 249 204 365 3.10e-56 194
MS.gene030323.t1 AT2G40140 53.143 175 74 4 86 258 197 365 1.07e-51 181
MS.gene030323.t1 AT2G40140 53.143 175 74 4 86 258 197 365 1.07e-51 181
MS.gene030323.t1 AT3G55980 51.934 181 69 5 86 258 194 364 5.33e-51 179
MS.gene030323.t1 AT3G55980 51.934 181 69 5 86 258 261 431 1.21e-50 179
MS.gene030323.t1 AT5G07500 69.159 107 33 0 98 204 48 154 1.68e-50 169

Find 114 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATTCTTTCTTCTTATTT+TGG 0.118905 6.2:+88346557 MS.gene030323:CDS
GGGTTGGTGGGTTTGATTTA+TGG 0.119649 6.2:+88347422 MS.gene030323:CDS
CTTTCAACTCTCTCCATTAT+AGG 0.177073 6.2:-88347466 None:intergenic
TTGAAAGTGGAAGAGATATT+AGG 0.228511 6.2:+88347482 MS.gene030323:CDS
ATAGTAACATTCCTATTAAT+TGG 0.241559 6.2:-88347295 None:intergenic
TGGGAATTCGGGTTTGGGTT+TGG 0.258433 6.2:+88347555 MS.gene030323:CDS
TGGGAATGGGAATTCGGGTT+TGG 0.271735 6.2:+88347549 MS.gene030323:CDS
GGGAATGGGAATTCGGGTTT+GGG 0.276394 6.2:+88347550 MS.gene030323:CDS
GGTTGGTGGGTTTGATTTAT+GGG 0.285810 6.2:+88347423 MS.gene030323:CDS
GAGAATGGGAATGGGAATTC+GGG 0.298840 6.2:+88347544 MS.gene030323:CDS
GGAGAATGGGAATGGGAATT+CGG 0.309885 6.2:+88347543 MS.gene030323:CDS
CCGGGTTTAGGCCGGGTTGG+TGG 0.326895 6.2:+88347409 MS.gene030323:CDS
TGAAAACTATGCCAATTAAT+AGG 0.328736 6.2:+88347284 MS.gene030323:CDS
TCCACCGGTGATTACTCTTC+CGG 0.334046 6.2:+88346644 MS.gene030323:CDS
ATTAATAGGAATGTTACTAT+TGG 0.347132 6.2:+88347298 MS.gene030323:CDS
GTCGTTTCGTAATTTACAAT+TGG 0.353057 6.2:+88347255 MS.gene030323:CDS
TGAAAGTGGAAGAGATATTA+GGG 0.354237 6.2:+88347483 MS.gene030323:CDS
CAGTTTCCTTTACGAAAATC+AGG 0.366299 6.2:-88346938 None:intergenic
CGGTTCTCCGTTACGACAAA+TGG 0.366550 6.2:+88347165 MS.gene030323:CDS
TCGGGTTTGGGTTTGGATGC+GGG 0.376728 6.2:+88347562 MS.gene030323:CDS
TTCGGGTTTGGGTTTGGATG+CGG 0.380726 6.2:+88347561 MS.gene030323:CDS
TCGTTTCGTAATTTACAATT+GGG 0.384486 6.2:+88347256 MS.gene030323:CDS
GAATCGTTGAACTCATTTGA+TGG 0.384682 6.2:-88346713 None:intergenic
AAGAAAATTCATTGGAGAAT+GGG 0.400460 6.2:+88347530 MS.gene030323:CDS
ATTAAGCAAAGAAAATTCAT+TGG 0.406900 6.2:+88347522 MS.gene030323:CDS
GAAGCGCTGCAAGTGCTTCT+CGG 0.409877 6.2:-88346679 None:intergenic
ATCGGCGGCGAAGGAGATTC+TGG 0.412112 6.2:-88347205 None:intergenic
GTCAACCCGGTCCTGATGTT+GGG 0.417880 6.2:+88347584 MS.gene030323:CDS
TTGTGAAGAGGAGCCTATAA+TGG 0.419641 6.2:+88347453 MS.gene030323:CDS
ATCTCCGGCATCGGCGGCGG+CGG 0.427717 6.2:+88346745 MS.gene030323:CDS
CGGCGGCGTGCTTTCTCGCC+GGG 0.433922 6.2:-88346878 None:intergenic
GCCGTTTGATCATCATGATT+CGG 0.436898 6.2:-88346533 None:intergenic
CGATTCTGATTTAGAATCTC+CGG 0.438051 6.2:+88346730 MS.gene030323:CDS
GGTCAACCCGGTCCTGATGT+TGG 0.438292 6.2:+88347583 MS.gene030323:CDS
AAAGAAAATTCATTGGAGAA+TGG 0.444951 6.2:+88347529 MS.gene030323:CDS
CGTAAAGGAAACTGTAAGAA+AGG 0.457732 6.2:+88346947 MS.gene030323:CDS
GGAGAACCGTCATACGAATC+TGG 0.463298 6.2:-88347151 None:intergenic
CAACGGTTCATGTTCCTCCT+TGG 0.464865 6.2:+88346510 MS.gene030323:CDS
AGAATCTCCGGCATCGGCGG+CGG 0.471287 6.2:+88346742 MS.gene030323:CDS
CGGGTTTAGGCCGGGTTGGT+GGG 0.471920 6.2:+88347410 MS.gene030323:CDS
ACGGCGGCGTGCTTTCTCGC+CGG 0.477321 6.2:-88346879 None:intergenic
GAATCCGCCGCCGCCGATGC+CGG 0.483196 6.2:-88346749 None:intergenic
ATCGGTGACATCGGCGGCGA+AGG 0.483470 6.2:-88347214 None:intergenic
CGTCTTTACACGGCTGAGTA+CGG 0.485485 6.2:-88347027 None:intergenic
AATTCATTGGAGAATGGGAA+TGG 0.486755 6.2:+88347535 MS.gene030323:CDS
GCAAACACGGCGGCGACAGC+TGG 0.489963 6.2:-88347053 None:intergenic
TCACAAACCCACCCAACATC+AGG 0.492003 6.2:-88347595 None:intergenic
ATTCATTGGAGAATGGGAAT+GGG 0.494528 6.2:+88347536 MS.gene030323:CDS
GAATGTTACTATTGGTTCAC+CGG 0.498343 6.2:+88347306 MS.gene030323:CDS
TTCTCGCCGGGATGTGCGTA+TGG 0.499904 6.2:-88346866 None:intergenic
ATCGGCGGCGGCGGATTCAA+CGG 0.500212 6.2:+88346754 MS.gene030323:CDS
TTTGGGTCACCGCTTCGGTC+CGG 0.502096 6.2:+88347352 MS.gene030323:CDS
AACCCACCCAACATCAGGAC+CGG 0.507115 6.2:-88347590 None:intergenic
GCCGAATCATGATGATCAAA+CGG 0.508151 6.2:+88346532 MS.gene030323:CDS
ACGTTAAGACGGAGCTGCTC+CGG 0.516425 6.2:-88347091 None:intergenic
CCACCAACCCGGCCTAAACC+CGG 0.518833 6.2:-88347409 None:intergenic
AGCAGAGTCCATCTTCCTCT+CGG 0.519878 6.2:+88347116 MS.gene030323:CDS
GCCGGCGATCTCACCGGCGC+CGG 0.528291 6.2:+88346599 MS.gene030323:CDS
GGTGAACCAGAACCGAAAAC+CGG 0.530214 6.2:-88347325 None:intergenic
TTAACACTCCGAGAGGAAGA+TGG 0.530641 6.2:-88347124 None:intergenic
AAAATCAGGACAAGCCGTAC+CGG 0.530716 6.2:-88346924 None:intergenic
CTGCAAGTGCTTCTCGGAGA+TGG 0.532581 6.2:-88346673 None:intergenic
AACAATGCCGGCGATCTCAC+CGG 0.537849 6.2:+88346593 MS.gene030323:CDS
GGCAGTGTAATCTCCGGCGC+CGG 0.541747 6.2:-88346612 None:intergenic
GGTTTGGATGCGGGTCAACC+CGG 0.549221 6.2:+88347571 MS.gene030323:CDS
TGATTTAGAATCTCCGGCAT+CGG 0.549413 6.2:+88346736 MS.gene030323:CDS
AATGAAACTTCCTCGGATCA+CGG 0.551799 6.2:-88346898 None:intergenic
AACTCTCCAGATTCGTATGA+CGG 0.556291 6.2:+88347145 MS.gene030323:CDS
CGTACTCAGCCGTGTAAAGA+CGG 0.559308 6.2:+88347028 MS.gene030323:CDS
TACGATAACAATAACAATGC+CGG 0.559578 6.2:+88346581 MS.gene030323:CDS
AAACCGGGTTTAGGCCGGGT+TGG 0.560051 6.2:+88347406 MS.gene030323:CDS
TCGTTCGCCATCGGTGACAT+CGG 0.561352 6.2:-88347223 None:intergenic
GAAGTTTCATTACTCCGGTA+CGG 0.561534 6.2:+88346910 MS.gene030323:CDS
CAGCTGGTTCCGTCTTTACA+CGG 0.564199 6.2:-88347037 None:intergenic
TCCGGCGCCGGTGAGATCGC+CGG 0.564683 6.2:-88346600 None:intergenic
GTCACCATCTCGTTCGCCAT+CGG 0.566053 6.2:-88347232 None:intergenic
TTCGTAATTTACAATTGGGG+AGG 0.566121 6.2:+88347260 MS.gene030323:CDS
GGCTGAGTACGGTAACGAGC+AGG 0.567252 6.2:-88347016 None:intergenic
CCGAGGAAGTTTCATTACTC+CGG 0.569117 6.2:+88346905 MS.gene030323:CDS
ATCTCCGGCAGTGTAATCTC+CGG 0.569727 6.2:-88346618 None:intergenic
CACGTGGAAGATCACATGAC+TGG 0.574790 6.2:+88346834 MS.gene030323:CDS
TTCGCCATCGGTGACATCGG+CGG 0.580138 6.2:-88347220 None:intergenic
GACTCTGCTGAACGTTAAGA+CGG 0.581166 6.2:-88347102 None:intergenic
TGATCATCATGATTCGGCCA+AGG 0.582191 6.2:-88346527 None:intergenic
CGTTTCGTAATTTACAATTG+GGG 0.584271 6.2:+88347257 MS.gene030323:CDS
TTCGCCGCCGATGTCACCGA+TGG 0.587560 6.2:+88347216 MS.gene030323:CDS
GGCGCCGGAGATTACACTGC+CGG 0.590744 6.2:+88346614 MS.gene030323:CDS
TTCTCGGAGATGGTAATCAC+CGG 0.596124 6.2:-88346663 None:intergenic
AAGCACGCCGCCGTGATCCG+AGG 0.597183 6.2:+88346888 MS.gene030323:CDS
ATAGTAACCATTTGTCGTAA+CGG 0.598472 6.2:-88347172 None:intergenic
CCGGAGTAATGAAACTTCCT+CGG 0.604275 6.2:-88346905 None:intergenic
ATGGGATCAGAGTTGTGAAG+AGG 0.606158 6.2:+88347441 MS.gene030323:CDS
TTGCTTCTTCGCTCACACGC+CGG 0.608383 6.2:+88347072 MS.gene030323:CDS
GTCACCGATGGCGAACGAGA+TGG 0.608528 6.2:+88347228 MS.gene030323:CDS
GAGTGTCCATACGCACATCC+CGG 0.612951 6.2:+88346860 MS.gene030323:CDS
TTTAGAATCTCCGGCATCGG+CGG 0.621860 6.2:+88346739 MS.gene030323:CDS
TTATCTTGAACTCGTACATG+CGG 0.628647 6.2:-88346802 None:intergenic
ATAATGGAGAGAGTTGAAAG+TGG 0.632760 6.2:+88347469 MS.gene030323:CDS
CAAGGAGGAACATGAACCGT+TGG 0.633061 6.2:-88346509 None:intergenic
TGGAAGATCACATGACTGGA+CGG 0.635001 6.2:+88346838 MS.gene030323:CDS
ATAAATCAAACCCACCAACC+CGG 0.643239 6.2:-88347420 None:intergenic
GACGCGTGTGAACACGCGCA+TGG 0.649749 6.2:+88346971 MS.gene030323:CDS
GGCGGCGGCGGATTCAACGG+TGG 0.651421 6.2:+88346757 MS.gene030323:CDS
ACCGGAAGAGTAATCACCGG+TGG 0.651463 6.2:-88346645 None:intergenic
ACCCACCCAACATCAGGACC+GGG 0.651526 6.2:-88347589 None:intergenic
AAGATAAGAAGATGCGCACG+TGG 0.652747 6.2:+88346818 MS.gene030323:CDS
ATCACCGGAAGAGTAATCAC+CGG 0.655530 6.2:-88346648 None:intergenic
TGTGAGCGAAGAAGCAAACA+CGG 0.674890 6.2:-88347066 None:intergenic
GGCGGCGAAGGAGATTCTGG+TGG 0.678659 6.2:-88347202 None:intergenic
TCATCATGATTCGGCCAAGG+AGG 0.681712 6.2:-88346524 None:intergenic
TGGAGAGTTAACACTCCGAG+AGG 0.702069 6.2:-88347131 None:intergenic
GATGCTGAGAGCTAATCCAA+CGG 0.723355 6.2:+88346493 None:intergenic
GAAACTTCCTCGGATCACGG+CGG 0.765354 6.2:-88346895 None:intergenic
GAGCGAAGAAGCAAACACGG+CGG 0.843910 6.2:-88347063 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTAACATTCCTATTAAT+TGG - chr6.2:88347298-88347317 None:intergenic 20.0%
!! ATTAAGCAAAGAAAATTCAT+TGG + chr6.2:88347522-88347541 MS.gene030323:CDS 20.0%
!! ATTAATAGGAATGTTACTAT+TGG + chr6.2:88347298-88347317 MS.gene030323:CDS 20.0%
! AAAGAAAATTCATTGGAGAA+TGG + chr6.2:88347529-88347548 MS.gene030323:CDS 25.0%
! AAGAAAATTCATTGGAGAAT+GGG + chr6.2:88347530-88347549 MS.gene030323:CDS 25.0%
! TCGTTTCGTAATTTACAATT+GGG + chr6.2:88347256-88347275 MS.gene030323:CDS 25.0%
! TGAAAACTATGCCAATTAAT+AGG + chr6.2:88347284-88347303 MS.gene030323:CDS 25.0%
!!! GAGATTCTTTCTTCTTATTT+TGG + chr6.2:88346557-88346576 MS.gene030323:CDS 25.0%
ATAGTAACCATTTGTCGTAA+CGG - chr6.2:88347175-88347194 None:intergenic 30.0%
ATTGGGCAAACTTAAAAAAC+CGG - chr6.2:88347374-88347393 None:intergenic 30.0%
CGTTTCGTAATTTACAATTG+GGG + chr6.2:88347257-88347276 MS.gene030323:CDS 30.0%
GTCGTTTCGTAATTTACAAT+TGG + chr6.2:88347255-88347274 MS.gene030323:CDS 30.0%
TACGATAACAATAACAATGC+CGG + chr6.2:88346581-88346600 MS.gene030323:CDS 30.0%
TGAAAGTGGAAGAGATATTA+GGG + chr6.2:88347483-88347502 MS.gene030323:CDS 30.0%
TTGAAAGTGGAAGAGATATT+AGG + chr6.2:88347482-88347501 MS.gene030323:CDS 30.0%
AATACCCCAACTAAAAAACC+GGG + chr6.2:88347391-88347410 MS.gene030323:CDS 35.0%
AATTCATTGGAGAATGGGAA+TGG + chr6.2:88347535-88347554 MS.gene030323:CDS 35.0%
ATTCATTGGAGAATGGGAAT+GGG + chr6.2:88347536-88347555 MS.gene030323:CDS 35.0%
CAATACCCCAACTAAAAAAC+CGG + chr6.2:88347390-88347409 MS.gene030323:CDS 35.0%
CAGTTTCCTTTACGAAAATC+AGG - chr6.2:88346941-88346960 None:intergenic 35.0%
CGTAAAGGAAACTGTAAGAA+AGG + chr6.2:88346947-88346966 MS.gene030323:CDS 35.0%
CTTTCAACTCTCTCCATTAT+AGG - chr6.2:88347469-88347488 None:intergenic 35.0%
GAATCGTTGAACTCATTTGA+TGG - chr6.2:88346716-88346735 None:intergenic 35.0%
TTATCTTGAACTCGTACATG+CGG - chr6.2:88346805-88346824 None:intergenic 35.0%
TTCGTAATTTACAATTGGGG+AGG + chr6.2:88347260-88347279 MS.gene030323:CDS 35.0%
! ATAATGGAGAGAGTTGAAAG+TGG + chr6.2:88347469-88347488 MS.gene030323:CDS 35.0%
! CGATTCTGATTTAGAATCTC+CGG + chr6.2:88346730-88346749 MS.gene030323:CDS 35.0%
!! GAATGTTACTATTGGTTCAC+CGG + chr6.2:88347306-88347325 MS.gene030323:CDS 35.0%
!!! CTAAACCCGGTTTTTTAGTT+GGG - chr6.2:88347399-88347418 None:intergenic 35.0%
!!! GGTTTTTTAGTTGGGGTATT+GGG - chr6.2:88347391-88347410 None:intergenic 35.0%
!!! TAAACCCGGTTTTTTAGTTG+GGG - chr6.2:88347398-88347417 None:intergenic 35.0%
AACTCTCCAGATTCGTATGA+CGG + chr6.2:88347145-88347164 MS.gene030323:CDS 40.0%
AATGAAACTTCCTCGGATCA+CGG - chr6.2:88346901-88346920 None:intergenic 40.0%
ATAAATCAAACCCACCAACC+CGG - chr6.2:88347423-88347442 None:intergenic 40.0%
CCAACTAAAAAACCGGGTTT+AGG + chr6.2:88347397-88347416 MS.gene030323:CDS 40.0%
GAAGTTTCATTACTCCGGTA+CGG + chr6.2:88346910-88346929 MS.gene030323:CDS 40.0%
GCCGAATCATGATGATCAAA+CGG + chr6.2:88346532-88346551 MS.gene030323:CDS 40.0%
GCCGTTTGATCATCATGATT+CGG - chr6.2:88346536-88346555 None:intergenic 40.0%
TTGTGAAGAGGAGCCTATAA+TGG + chr6.2:88347453-88347472 MS.gene030323:CDS 40.0%
! GCTTGTCCTGATTTTCGTAA+AGG + chr6.2:88346932-88346951 MS.gene030323:CDS 40.0%
! TGATTTAGAATCTCCGGCAT+CGG + chr6.2:88346736-88346755 MS.gene030323:CDS 40.0%
!! GGTTGGTGGGTTTGATTTAT+GGG + chr6.2:88347423-88347442 MS.gene030323:CDS 40.0%
!!! ACTATTGGTTCACCGGTTTT+CGG + chr6.2:88347313-88347332 MS.gene030323:CDS 40.0%
!!! CCTAAACCCGGTTTTTTAGT+TGG - chr6.2:88347400-88347419 None:intergenic 40.0%
!!! CGGTTTTTTAGTTGGGGTAT+TGG - chr6.2:88347392-88347411 None:intergenic 40.0%
AAAATCAGGACAAGCCGTAC+CGG - chr6.2:88346927-88346946 None:intergenic 45.0%
AAGATAAGAAGATGCGCACG+TGG + chr6.2:88346818-88346837 MS.gene030323:CDS 45.0%
ATCACCGGAAGAGTAATCAC+CGG - chr6.2:88346651-88346670 None:intergenic 45.0%
ATCACCGGTGGAAAAATCTC+CGG - chr6.2:88346636-88346655 None:intergenic 45.0%
ATGGGATCAGAGTTGTGAAG+AGG + chr6.2:88347441-88347460 MS.gene030323:CDS 45.0%
CCGAGGAAGTTTCATTACTC+CGG + chr6.2:88346905-88346924 MS.gene030323:CDS 45.0%
CCGGAGTAATGAAACTTCCT+CGG - chr6.2:88346908-88346927 None:intergenic 45.0%
CTAAAAAACCGGGTTTAGGC+CGG + chr6.2:88347401-88347420 MS.gene030323:CDS 45.0%
CTTAAAAAACCGGACCGAAG+CGG - chr6.2:88347364-88347383 None:intergenic 45.0%
GACTCTGCTGAACGTTAAGA+CGG - chr6.2:88347105-88347124 None:intergenic 45.0%
GAGAATGGGAATGGGAATTC+GGG + chr6.2:88347544-88347563 MS.gene030323:CDS 45.0%
GGAGAATGGGAATGGGAATT+CGG + chr6.2:88347543-88347562 MS.gene030323:CDS 45.0%
TAAAAAACCGGGTTTAGGCC+GGG + chr6.2:88347402-88347421 MS.gene030323:CDS 45.0%
TGGAAGATCACATGACTGGA+CGG + chr6.2:88346838-88346857 MS.gene030323:CDS 45.0%
TGTGAGCGAAGAAGCAAACA+CGG - chr6.2:88347069-88347088 None:intergenic 45.0%
TTAACACTCCGAGAGGAAGA+TGG - chr6.2:88347127-88347146 None:intergenic 45.0%
TTCTCGGAGATGGTAATCAC+CGG - chr6.2:88346666-88346685 None:intergenic 45.0%
! TGATCATCATGATTCGGCCA+AGG - chr6.2:88346530-88346549 None:intergenic 45.0%
!! GGGTTGGTGGGTTTGATTTA+TGG + chr6.2:88347422-88347441 MS.gene030323:CDS 45.0%
!!! GTTCTGGTTCACCGGTTTTT+GGG + chr6.2:88347335-88347354 MS.gene030323:CDS 45.0%
AGCAGAGTCCATCTTCCTCT+CGG + chr6.2:88347116-88347135 MS.gene030323:CDS 50.0%
ATCTCCGGCAGTGTAATCTC+CGG - chr6.2:88346621-88346640 None:intergenic 50.0%
CAACGGTTCATGTTCCTCCT+TGG + chr6.2:88346510-88346529 MS.gene030323:CDS 50.0%
CAAGGAGGAACATGAACCGT+TGG - chr6.2:88346512-88346531 None:intergenic 50.0%
CACGTGGAAGATCACATGAC+TGG + chr6.2:88346834-88346853 MS.gene030323:CDS 50.0%
CGGTTCTCCGTTACGACAAA+TGG + chr6.2:88347165-88347184 MS.gene030323:CDS 50.0%
CGTACTCAGCCGTGTAAAGA+CGG + chr6.2:88347028-88347047 MS.gene030323:CDS 50.0%
CGTCTTTACACGGCTGAGTA+CGG - chr6.2:88347030-88347049 None:intergenic 50.0%
GGAGAACCGTCATACGAATC+TGG - chr6.2:88347154-88347173 None:intergenic 50.0%
GGTGAACCAGAACCGAAAAC+CGG - chr6.2:88347328-88347347 None:intergenic 50.0%
TCCACCGGTGATTACTCTTC+CGG + chr6.2:88346644-88346663 MS.gene030323:CDS 50.0%
TGGAGAGTTAACACTCCGAG+AGG - chr6.2:88347134-88347153 None:intergenic 50.0%
! ACTGCCGGAGATTTTTCCAC+CGG + chr6.2:88346629-88346648 MS.gene030323:CDS 50.0%
! CAGCTGGTTCCGTCTTTACA+CGG - chr6.2:88347040-88347059 None:intergenic 50.0%
! GGGAATGGGAATTCGGGTTT+GGG + chr6.2:88347550-88347569 MS.gene030323:CDS 50.0%
! TCATCATGATTCGGCCAAGG+AGG - chr6.2:88346527-88346546 None:intergenic 50.0%
! TGGGAATGGGAATTCGGGTT+TGG + chr6.2:88347549-88347568 MS.gene030323:CDS 50.0%
! TGGGAATTCGGGTTTGGGTT+TGG + chr6.2:88347555-88347574 MS.gene030323:CDS 50.0%
! TTCGGGTTTGGGTTTGGATG+CGG + chr6.2:88347561-88347580 MS.gene030323:CDS 50.0%
! TTTAGAATCTCCGGCATCGG+CGG + chr6.2:88346739-88346758 MS.gene030323:CDS 50.0%
!!! CGCATGGTGTTTTCGAGTGT+TGG + chr6.2:88346987-88347006 MS.gene030323:CDS 50.0%
!!! GGTTCTGGTTCACCGGTTTT+TGG + chr6.2:88347334-88347353 MS.gene030323:CDS 50.0%
!!! GGTTTTCGGTTCTGGTTCAC+CGG + chr6.2:88347327-88347346 MS.gene030323:CDS 50.0%
AACAATGCCGGCGATCTCAC+CGG + chr6.2:88346593-88346612 MS.gene030323:CDS 55.0%
ACCGGAAGAGTAATCACCGG+TGG - chr6.2:88346648-88346667 None:intergenic 55.0%
ACGTTAAGACGGAGCTGCTC+CGG - chr6.2:88347094-88347113 None:intergenic 55.0%
CGAAGCGGTGACCCAAAAAC+CGG - chr6.2:88347349-88347368 None:intergenic 55.0%
CTGCAAGTGCTTCTCGGAGA+TGG - chr6.2:88346676-88346695 None:intergenic 55.0%
GAAACTTCCTCGGATCACGG+CGG - chr6.2:88346898-88346917 None:intergenic 55.0%
GAGCGAAGAAGCAAACACGG+CGG - chr6.2:88347066-88347085 None:intergenic 55.0%
GAGTGTCCATACGCACATCC+CGG + chr6.2:88346860-88346879 MS.gene030323:CDS 55.0%
GTCACCATCTCGTTCGCCAT+CGG - chr6.2:88347235-88347254 None:intergenic 55.0%
TCGTTCGCCATCGGTGACAT+CGG - chr6.2:88347226-88347245 None:intergenic 55.0%
TTGCTTCTTCGCTCACACGC+CGG + chr6.2:88347072-88347091 MS.gene030323:CDS 55.0%
! TCGGGTTTGGGTTTGGATGC+GGG + chr6.2:88347562-88347581 MS.gene030323:CDS 55.0%
!! GAAGCGCTGCAAGTGCTTCT+CGG - chr6.2:88346682-88346701 None:intergenic 55.0%
!!! CGGTTTTTGGGTCACCGCTT+CGG + chr6.2:88347347-88347366 MS.gene030323:CDS 55.0%
!!! GGTTCACCGGTTTTCGGTTC+TGG + chr6.2:88347319-88347338 MS.gene030323:CDS 55.0%
AAACCGGGTTTAGGCCGGGT+TGG + chr6.2:88347406-88347425 MS.gene030323:CDS 60.0%
ATCGGCGGCGAAGGAGATTC+TGG - chr6.2:88347208-88347227 None:intergenic 60.0%
GGCTGAGTACGGTAACGAGC+AGG - chr6.2:88347019-88347038 None:intergenic 60.0%
GGTCAACCCGGTCCTGATGT+TGG + chr6.2:88347583-88347602 MS.gene030323:CDS 60.0%
GGTTTGGATGCGGGTCAACC+CGG + chr6.2:88347571-88347590 MS.gene030323:CDS 60.0%
GTCACCGATGGCGAACGAGA+TGG + chr6.2:88347228-88347247 MS.gene030323:CDS 60.0%
TTCGCCATCGGTGACATCGG+CGG - chr6.2:88347223-88347242 None:intergenic 60.0%
TTCTCGCCGGGATGTGCGTA+TGG - chr6.2:88346869-88346888 None:intergenic 60.0%
TTTGGGTCACCGCTTCGGTC+CGG + chr6.2:88347352-88347371 MS.gene030323:CDS 60.0%
ATCGGTGACATCGGCGGCGA+AGG - chr6.2:88347217-88347236 None:intergenic 65.0%
CCACCAACCCGGCCTAAACC+CGG - chr6.2:88347412-88347431 None:intergenic 65.0%
GACGCGTGTGAACACGCGCA+TGG + chr6.2:88346971-88346990 MS.gene030323:CDS 65.0%
GGCAGTGTAATCTCCGGCGC+CGG - chr6.2:88346615-88346634 None:intergenic 65.0%
GGCGGCGAAGGAGATTCTGG+TGG - chr6.2:88347205-88347224 None:intergenic 65.0%
TTCGCCGCCGATGTCACCGA+TGG + chr6.2:88347216-88347235 MS.gene030323:CDS 65.0%
! ATCGGCGGCGGCGGATTCAA+CGG + chr6.2:88346754-88346773 MS.gene030323:CDS 65.0%
! GGCGCCGGAGATTACACTGC+CGG + chr6.2:88346614-88346633 MS.gene030323:CDS 65.0%
!! AGAATCTCCGGCATCGGCGG+CGG + chr6.2:88346742-88346761 MS.gene030323:CDS 65.0%
!! CGGGTTTAGGCCGGGTTGGT+GGG + chr6.2:88347410-88347429 MS.gene030323:CDS 65.0%
AAGCACGCCGCCGTGATCCG+AGG + chr6.2:88346888-88346907 MS.gene030323:CDS 70.0%
ACGGCGGCGTGCTTTCTCGC+CGG - chr6.2:88346882-88346901 None:intergenic 70.0%
GCAAACACGGCGGCGACAGC+TGG - chr6.2:88347056-88347075 None:intergenic 70.0%
! CCGGGTTTAGGCCGGGTTGG+TGG + chr6.2:88347409-88347428 MS.gene030323:CDS 70.0%
CGGCGGCGTGCTTTCTCGCC+GGG - chr6.2:88346881-88346900 None:intergenic 75.0%
GAATCCGCCGCCGCCGATGC+CGG - chr6.2:88346752-88346771 None:intergenic 75.0%
! GGCGGCGGCGGATTCAACGG+TGG + chr6.2:88346757-88346776 MS.gene030323:CDS 75.0%
!! ATCTCCGGCATCGGCGGCGG+CGG + chr6.2:88346745-88346764 MS.gene030323:CDS 75.0%
!! TCCGGCGCCGGTGAGATCGC+CGG - chr6.2:88346603-88346622 None:intergenic 75.0%
! GCCGGCGATCTCACCGGCGC+CGG + chr6.2:88346599-88346618 MS.gene030323:CDS 80.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 88346494 88347605 88346494 ID=MS.gene030323
chr6.2 mRNA 88346494 88347605 88346494 ID=MS.gene030323.t1;Parent=MS.gene030323
chr6.2 exon 88346494 88347605 88346494 ID=MS.gene030323.t1.exon1;Parent=MS.gene030323.t1
chr6.2 CDS 88346494 88347605 88346494 ID=cds.MS.gene030323.t1;Parent=MS.gene030323.t1
Gene Sequence

>MS.gene030323

ATGCTGAGAGCTAATCCAACGGTTCATGTTCCTCCTTGGCCGAATCATGATGATCAAACGGCTGAGATTCTTTCTTCTTATTTTGGTTACGATAACAATAACAATGCCGGCGATCTCACCGGCGCCGGAGATTACACTGCCGGAGATTTTTCCACCGGTGATTACTCTTCCGGTGATTACCATCTCCGAGAAGCACTTGCAGCGCTTCAACGTTATCTTCCATCAAATGAGTTCAACGATTCTGATTTAGAATCTCCGGCATCGGCGGCGGCGGATTCAACGGTGGATGCATATTCATGCGATCATTTCCGCATGTACGAGTTCAAGATAAGAAGATGCGCACGTGGAAGATCACATGACTGGACGGAGTGTCCATACGCACATCCCGGCGAGAAAGCACGCCGCCGTGATCCGAGGAAGTTTCATTACTCCGGTACGGCTTGTCCTGATTTTCGTAAAGGAAACTGTAAGAAAGGTGACGCGTGTGAACACGCGCATGGTGTTTTCGAGTGTTGGCTTCATCCTGCTCGTTACCGTACTCAGCCGTGTAAAGACGGAACCAGCTGTCGCCGCCGTGTTTGCTTCTTCGCTCACACGCCGGAGCAGCTCCGTCTTAACGTTCAGCAGAGTCCATCTTCCTCTCGGAGTGTTAACTCTCCAGATTCGTATGACGGTTCTCCGTTACGACAAATGGTTACTATAACGACGCCACCAGAATCTCCTTCGCCGCCGATGTCACCGATGGCGAACGAGATGGTGACGTCGTTTCGTAATTTACAATTGGGGAGGATGAAAACTATGCCAATTAATAGGAATGTTACTATTGGTTCACCGGTTTTCGGTTCTGGTTCACCGGTTTTTGGGTCACCGCTTCGGTCCGGTTTTTTAAGTTTGCCCAATACCCCAACTAAAAAACCGGGTTTAGGCCGGGTTGGTGGGTTTGATTTATGGGATCAGAGTTGTGAAGAGGAGCCTATAATGGAGAGAGTTGAAAGTGGAAGAGATATTAGGGCTAAGATGTTTGAGAAATTAAGCAAAGAAAATTCATTGGAGAATGGGAATGGGAATTCGGGTTTGGGTTTGGATGCGGGTCAACCCGGTCCTGATGTTGG
Protein sequence

>MS.gene030323.t1

MLRANPTVHVPPWPNHDDQTAEILSSYFGYDNNNNAGDLTGAGDYTAGDFSTGDYSSGDYHLREALAALQRYLPSNEFNDSDLESPASAAADSTVDAYSCDHFRMYEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEHAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLNVQQSPSSSRSVNSPDSYDGSPLRQMVTITTPPESPSPPMSPMANEMVTSFRNLQLGRMKTMPINRNVTIGSPVFGSGSPVFGSPLRSGFLSLPNTPTKKPGLGRVGGFDLWDQSCEEEPIMERVESGRDIRAKMFEKLSKENSLENGNGNSGLGLDAGQPGPDV