Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030429.t1 | XP_013447014.1 | 98.7 | 154 | 2 | 0 | 56 | 209 | 1 | 154 | 2.10E-81 | 312 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030429.t1 | A0A072TV38 | 98.7 | 154 | 2 | 0 | 56 | 209 | 1 | 154 | 1.5e-81 | 312.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene030429.t1 | TF | PLATZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030429.t1 | MTR_8g097310 | 98.701 | 154 | 2 | 0 | 56 | 209 | 1 | 154 | 1.36e-112 | 318 |
| MS.gene030429.t1 | MTR_5g077740 | 39.423 | 208 | 101 | 4 | 4 | 209 | 3 | 187 | 3.65e-45 | 148 |
| MS.gene030429.t1 | MTR_7g102790 | 34.783 | 207 | 110 | 7 | 19 | 208 | 4 | 202 | 2.54e-29 | 108 |
| MS.gene030429.t1 | MTR_4g094680 | 36.747 | 166 | 94 | 4 | 1 | 159 | 1 | 162 | 5.72e-29 | 108 |
| MS.gene030429.t1 | MTR_1g062160 | 32.323 | 198 | 120 | 5 | 22 | 208 | 7 | 201 | 4.27e-27 | 102 |
| MS.gene030429.t1 | MTR_4g078170 | 31.818 | 198 | 120 | 7 | 22 | 208 | 15 | 208 | 1.63e-25 | 99.0 |
| MS.gene030429.t1 | MTR_4g116300 | 36.111 | 144 | 87 | 3 | 20 | 162 | 4 | 143 | 3.98e-25 | 99.0 |
| MS.gene030429.t1 | MTR_2g055210 | 31.148 | 183 | 108 | 6 | 22 | 191 | 102 | 279 | 1.25e-24 | 99.4 |
| MS.gene030429.t1 | MTR_5g007230 | 29.798 | 198 | 131 | 5 | 15 | 208 | 14 | 207 | 4.60e-24 | 95.1 |
| MS.gene030429.t1 | MTR_5g030130 | 31.220 | 205 | 114 | 7 | 22 | 208 | 35 | 230 | 1.05e-23 | 94.7 |
| MS.gene030429.t1 | MTR_2g036170 | 34.395 | 157 | 90 | 6 | 21 | 175 | 36 | 181 | 1.05e-22 | 92.4 |
| MS.gene030429.t1 | MTR_8g066820 | 30.500 | 200 | 122 | 7 | 22 | 208 | 33 | 228 | 1.33e-22 | 91.7 |
| MS.gene030429.t1 | MTR_8g105930 | 32.432 | 148 | 75 | 5 | 24 | 150 | 15 | 158 | 1.09e-18 | 81.6 |
| MS.gene030429.t1 | MTR_5g030130 | 34.351 | 131 | 80 | 4 | 22 | 150 | 35 | 161 | 2.27e-18 | 79.7 |
| MS.gene030429.t1 | MTR_2g084525 | 30.769 | 169 | 102 | 8 | 24 | 180 | 6 | 171 | 1.16e-14 | 70.5 |
| MS.gene030429.t1 | MTR_2g084510 | 27.801 | 241 | 116 | 10 | 24 | 209 | 5 | 242 | 7.07e-14 | 68.6 |
| MS.gene030429.t1 | MTR_1g032880 | 34.043 | 141 | 81 | 4 | 68 | 206 | 27 | 157 | 7.33e-14 | 67.0 |
| MS.gene030429.t1 | MTR_2g060500 | 29.787 | 141 | 77 | 6 | 24 | 149 | 12 | 145 | 6.09e-12 | 61.6 |
| MS.gene030429.t1 | MTR_2g060540 | 29.787 | 141 | 77 | 6 | 24 | 149 | 12 | 145 | 8.20e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030429.t1 | AT2G27930 | 37.438 | 203 | 98 | 7 | 19 | 208 | 1 | 187 | 6.26e-29 | 107 |
| MS.gene030429.t1 | AT2G27930 | 37.438 | 203 | 98 | 7 | 19 | 208 | 1 | 187 | 6.26e-29 | 107 |
| MS.gene030429.t1 | AT1G31040 | 32.468 | 231 | 107 | 8 | 21 | 208 | 18 | 242 | 1.31e-28 | 107 |
| MS.gene030429.t1 | AT2G01818 | 32.589 | 224 | 123 | 9 | 12 | 209 | 1 | 222 | 4.59e-28 | 105 |
| MS.gene030429.t1 | AT5G46710 | 32.547 | 212 | 104 | 6 | 22 | 208 | 12 | 209 | 4.80e-27 | 102 |
| MS.gene030429.t1 | AT5G46710 | 32.547 | 212 | 104 | 6 | 22 | 208 | 28 | 225 | 7.32e-27 | 102 |
| MS.gene030429.t1 | AT2G12646 | 34.356 | 163 | 102 | 3 | 18 | 179 | 2 | 160 | 2.06e-26 | 102 |
| MS.gene030429.t1 | AT2G12646 | 34.356 | 163 | 102 | 3 | 18 | 179 | 2 | 160 | 2.06e-26 | 102 |
| MS.gene030429.t1 | AT1G32700 | 32.195 | 205 | 123 | 6 | 16 | 208 | 6 | 206 | 6.00e-26 | 100 |
| MS.gene030429.t1 | AT2G12646 | 35.000 | 160 | 99 | 3 | 21 | 179 | 2 | 157 | 1.14e-25 | 100 |
| MS.gene030429.t1 | AT1G76590 | 32.787 | 183 | 109 | 6 | 10 | 190 | 6 | 176 | 1.78e-25 | 99.8 |
| MS.gene030429.t1 | AT4G17900 | 32.143 | 196 | 121 | 5 | 22 | 208 | 20 | 212 | 9.86e-25 | 97.1 |
| MS.gene030429.t1 | AT1G43000 | 31.718 | 227 | 124 | 8 | 7 | 208 | 3 | 223 | 1.02e-24 | 97.1 |
| MS.gene030429.t1 | AT4G17900 | 32.143 | 196 | 121 | 5 | 22 | 208 | 34 | 226 | 1.04e-24 | 97.1 |
| MS.gene030429.t1 | AT1G43000 | 31.944 | 216 | 118 | 7 | 18 | 208 | 5 | 216 | 1.07e-24 | 97.1 |
| MS.gene030429.t1 | AT3G60670 | 36.296 | 135 | 81 | 3 | 20 | 153 | 5 | 135 | 2.93e-24 | 96.3 |
| MS.gene030429.t1 | AT1G21000 | 28.511 | 235 | 116 | 10 | 22 | 208 | 16 | 246 | 2.47e-22 | 91.3 |
| MS.gene030429.t1 | AT1G21000 | 28.511 | 235 | 116 | 10 | 22 | 208 | 13 | 243 | 2.56e-22 | 91.3 |
| MS.gene030429.t1 | AT2G27930 | 38.462 | 143 | 74 | 5 | 19 | 150 | 1 | 140 | 1.65e-20 | 84.7 |
| MS.gene030429.t1 | AT2G27930 | 38.462 | 143 | 74 | 5 | 19 | 150 | 1 | 140 | 1.65e-20 | 84.7 |
| MS.gene030429.t1 | AT5G46710 | 34.507 | 142 | 88 | 4 | 11 | 150 | 17 | 155 | 3.17e-20 | 84.0 |
| MS.gene030429.t1 | AT1G32700 | 31.765 | 170 | 101 | 5 | 50 | 208 | 2 | 167 | 6.02e-19 | 80.9 |
| MS.gene030429.t1 | AT2G27930 | 34.483 | 145 | 69 | 4 | 75 | 208 | 61 | 190 | 4.31e-13 | 65.5 |
| MS.gene030429.t1 | AT2G27930 | 34.483 | 145 | 69 | 4 | 75 | 208 | 61 | 190 | 4.31e-13 | 65.5 |
| MS.gene030429.t1 | AT2G01818 | 33.121 | 157 | 80 | 7 | 76 | 209 | 4 | 158 | 5.82e-12 | 61.6 |
Find 39 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGACCAACTTTGGGAAAA+AGG | 0.172143 | 4.4:+6548158 | MS.gene030429:CDS |
| GAAACACAGGAGGGAACTTC+TGG | 0.286766 | 4.4:+6548139 | MS.gene030429:CDS |
| AAAAGAGCCTCAAGCCAAAT+TGG | 0.306260 | 4.4:-6546895 | None:intergenic |
| GGGAACTTCTGGACCAACTT+TGG | 0.358951 | 4.4:+6548150 | MS.gene030429:CDS |
| GGAACTTCTGGACCAACTTT+GGG | 0.359755 | 4.4:+6548151 | MS.gene030429:CDS |
| TCAAGTGGTGTTGTGCTAAC+TGG | 0.361118 | 4.4:-6548073 | None:intergenic |
| CACCAGATGATATACAATAT+TGG | 0.377985 | 4.4:-6547008 | None:intergenic |
| CTACTGTGCCCTTTCTTGTA+AGG | 0.399035 | 4.4:+6547910 | MS.gene030429:CDS |
| TTCCTCAGGACCTTCCATCC+AGG | 0.406819 | 4.4:+6548099 | MS.gene030429:CDS |
| CCACTTAAGCCTTTAAAAGA+AGG | 0.431553 | 4.4:-6548209 | None:intergenic |
| CCAGGGTCCTCCTCAGCATC+AGG | 0.432791 | 4.4:+6548117 | MS.gene030429:CDS |
| GCACAGTAGCGATATAAATC+AGG | 0.468363 | 4.4:-6547896 | None:intergenic |
| TCCTCAGGACCTTCCATCCA+GGG | 0.475053 | 4.4:+6548100 | MS.gene030429:CDS |
| CGTAGACTTACAAAAGCAAC+AGG | 0.478767 | 4.4:+6547780 | MS.gene030429:intron |
| TAGTCATCACCTTACAAGAA+AGG | 0.491098 | 4.4:-6547919 | None:intergenic |
| CCTGATGCTGAGGAGGACCC+TGG | 0.491773 | 4.4:-6548117 | None:intergenic |
| TTGATGCTATCTCACTGAAC+TGG | 0.502645 | 4.4:-6547829 | None:intergenic |
| AGTCATCACCTTACAAGAAA+GGG | 0.507414 | 4.4:-6547918 | None:intergenic |
| GTATTGTACAGATTGCAATA+TGG | 0.511488 | 4.4:+6546978 | MS.gene030429:CDS |
| TCCTGTGTTTCCTGATGCTG+AGG | 0.533529 | 4.4:-6548127 | None:intergenic |
| TGCCAATATTGTATATCATC+TGG | 0.537908 | 4.4:+6547006 | MS.gene030429:CDS |
| CACTTAAGCCTTTAAAAGAA+GGG | 0.538156 | 4.4:-6548208 | None:intergenic |
| ACACCACTTGAGTCTTCCTC+AGG | 0.546058 | 4.4:+6548085 | MS.gene030429:CDS |
| GTTCTACTCATCAAATTCGT+AGG | 0.546464 | 4.4:+6546941 | MS.gene030429:CDS |
| TGTGTTTCCTGATGCTGAGG+AGG | 0.548455 | 4.4:-6548124 | None:intergenic |
| ATGCTGAGGAGGACCCTGGA+TGG | 0.559712 | 4.4:-6548113 | None:intergenic |
| TGTTGTTGCTCTGAGTGCTA+TGG | 0.578177 | 4.4:+6547080 | MS.gene030429:CDS |
| TTACAAAAGCAACAGGAAAG+TGG | 0.586060 | 4.4:+6547787 | MS.gene030429:CDS |
| TCCTCAGCATCAGGAAACAC+AGG | 0.589871 | 4.4:+6548126 | MS.gene030429:CDS |
| TGAGGAGGACCCTGGATGGA+AGG | 0.592506 | 4.4:-6548109 | None:intergenic |
| CTGTATAAGAGGATAATGAC+GGG | 0.598693 | 4.4:+6545871 | None:intergenic |
| ACCCTGGATGGAAGGTCCTG+AGG | 0.602741 | 4.4:-6548101 | None:intergenic |
| TAAAAGAAGGGAGATCTATG+AGG | 0.610889 | 4.4:-6548196 | None:intergenic |
| AATATATAGACATATTTACA+AGG | 0.614023 | 4.4:+6547056 | MS.gene030429:CDS |
| GCTATCTCACTGAACTGGCG+AGG | 0.656835 | 4.4:-6547824 | None:intergenic |
| TCAGCATCAGGAAACACAGG+AGG | 0.659675 | 4.4:+6548129 | MS.gene030429:CDS |
| GCTAACTGGATCCTCAGACT+CGG | 0.666411 | 4.4:-6548059 | None:intergenic |
| GGTCCTGAGGAAGACTCAAG+TGG | 0.678585 | 4.4:-6548088 | None:intergenic |
| CAGCATCAGGAAACACAGGA+GGG | 0.689712 | 4.4:+6548130 | MS.gene030429:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATGTTGAAAAATAAAAA+GGG | + | chr4.4:6547460-6547479 | MS.gene030429:intron | 10.0% |
| !!! | TTTTATGTTGAAAAATAAAA+AGG | + | chr4.4:6547459-6547478 | MS.gene030429:intron | 10.0% |
| !! | AATATATAGACATATTTACA+AGG | + | chr4.4:6547056-6547075 | MS.gene030429:CDS | 15.0% |
| !! | AATATATTGTATGTTTGATA+TGG | - | chr4.4:6546648-6546667 | None:intergenic | 15.0% |
| !! | ATATATTGTATGTTTGATAT+GGG | - | chr4.4:6546647-6546666 | None:intergenic | 15.0% |
| !!! | TATATATTTTCAGTATTTTG+TGG | - | chr4.4:6547044-6547063 | None:intergenic | 15.0% |
| !!! | TATCTTTACATATTTTTACA+TGG | + | chr4.4:6546232-6546251 | MS.gene030429:intron | 15.0% |
| !! | AAGAAGAATCAAAACAAAAT+TGG | - | chr4.4:6547756-6547775 | None:intergenic | 20.0% |
| !! | AATATTCAATTAAAACTCCT+TGG | + | chr4.4:6545973-6545992 | MS.gene030429:intron | 20.0% |
| !! | AGAGTTATTTGTAATTAAGT+AGG | - | chr4.4:6547665-6547684 | None:intergenic | 20.0% |
| !! | GAGTTATTTGTAATTAAGTA+GGG | - | chr4.4:6547664-6547683 | None:intergenic | 20.0% |
| !!! | AAGATTTTCAAAGATAAACA+TGG | - | chr4.4:6546288-6546307 | None:intergenic | 20.0% |
| !!! | AATCATGCTTTAAAATGAAT+TGG | - | chr4.4:6546358-6546377 | None:intergenic | 20.0% |
| !!! | ATAGATAAGCTCTTAAATTT+TGG | + | chr4.4:6546065-6546084 | MS.gene030429:intron | 20.0% |
| !!! | ATTTTGTTTTGATTCTTCTT+TGG | + | chr4.4:6547756-6547775 | MS.gene030429:intron | 20.0% |
| !!! | CTTTTGAGAGAAAATTATTT+TGG | + | chr4.4:6546913-6546932 | MS.gene030429:CDS | 20.0% |
| !!! | GAAAAATAAAAAGGGTATTT+TGG | + | chr4.4:6547468-6547487 | MS.gene030429:intron | 20.0% |
| !!! | TATTTTTCCTTCATATTGTT+GGG | + | chr4.4:6547310-6547329 | MS.gene030429:intron | 20.0% |
| !!! | TGAATATGAAGTACTTTATT+AGG | + | chr4.4:6546134-6546153 | MS.gene030429:intron | 20.0% |
| !!! | TTTTTATCTGAATTTTCATC+AGG | + | chr4.4:6548015-6548034 | MS.gene030429:intron | 20.0% |
| ! | ATATGTTAATTAGCATACAC+TGG | - | chr4.4:6546710-6546729 | None:intergenic | 25.0% |
| ! | CAATATAAACTTTACTGACA+TGG | + | chr4.4:6546833-6546852 | MS.gene030429:intron | 25.0% |
| ! | GAATCAAAACAAAATTGGTT+CGG | - | chr4.4:6547751-6547770 | None:intergenic | 25.0% |
| ! | GTAATGTTGAAAAACCAATT+TGG | + | chr4.4:6546881-6546900 | MS.gene030429:CDS | 25.0% |
| ! | TGGTAGAAACATCTTATTAA+TGG | - | chr4.4:6546268-6546287 | None:intergenic | 25.0% |
| ! | TTCTTCTACAAAAATGAACA+TGG | + | chr4.4:6545900-6545919 | MS.gene030429:CDS | 25.0% |
| ! | TTGATTTAGAAACTGATCAT+AGG | - | chr4.4:6547586-6547605 | None:intergenic | 25.0% |
| !! | ATATTTTCAGTATTTTGTGG+TGG | - | chr4.4:6547041-6547060 | None:intergenic | 25.0% |
| !! | TTTAGCTCACAATTAAATAC+TGG | + | chr4.4:6546581-6546600 | MS.gene030429:intron | 25.0% |
| !!! | ATGCTTTAAAATGAATTGGT+TGG | - | chr4.4:6546354-6546373 | None:intergenic | 25.0% |
| !!! | CAATATGGAAGTATCAATTT+TGG | + | chr4.4:6546531-6546550 | MS.gene030429:intron | 25.0% |
| !!! | CTATTTTTCCTTCATATTGT+TGG | + | chr4.4:6547309-6547328 | MS.gene030429:intron | 25.0% |
| !!! | TGGTTTTTCAACATTACTTT+GGG | - | chr4.4:6546878-6546897 | None:intergenic | 25.0% |
| !!! | TGGTTTTTTTGTTGTGTTAA+TGG | + | chr4.4:6546601-6546620 | MS.gene030429:intron | 25.0% |
| !!! | TTGGTTTTTCAACATTACTT+TGG | - | chr4.4:6546879-6546898 | None:intergenic | 25.0% |
| AAAGCATGATTGAAATAAGC+TGG | + | chr4.4:6546367-6546386 | MS.gene030429:intron | 30.0% | |
| AACAATATTGCGAAGAAATC+TGG | - | chr4.4:6546200-6546219 | None:intergenic | 30.0% | |
| ACAAAAATGAACATGGTATG+TGG | + | chr4.4:6545907-6545926 | MS.gene030429:intron | 30.0% | |
| ATAACTAGAACTACGCTAAA+AGG | - | chr4.4:6546415-6546434 | None:intergenic | 30.0% | |
| ATAGGACTGGACAAAATATA+TGG | - | chr4.4:6547568-6547587 | None:intergenic | 30.0% | |
| CACCAGATGATATACAATAT+TGG | - | chr4.4:6547011-6547030 | None:intergenic | 30.0% | |
| GTATTGTACAGATTGCAATA+TGG | + | chr4.4:6546978-6546997 | MS.gene030429:CDS | 30.0% | |
| TAACTAGAACTACGCTAAAA+GGG | - | chr4.4:6546414-6546433 | None:intergenic | 30.0% | |
| TAGTTATTCTCAAGTTCAAC+AGG | + | chr4.4:6546434-6546453 | MS.gene030429:intron | 30.0% | |
| TATACTTCCTCTGTGTTAAA+TGG | + | chr4.4:6545947-6545966 | MS.gene030429:intron | 30.0% | |
| TGAAGAAACATGTAGCAATA+TGG | + | chr4.4:6546516-6546535 | MS.gene030429:intron | 30.0% | |
| TGCCAATATTGTATATCATC+TGG | + | chr4.4:6547006-6547025 | MS.gene030429:CDS | 30.0% | |
| TTGGGAAAAAGGAAAAGAAA+GGG | + | chr4.4:6548169-6548188 | MS.gene030429:CDS | 30.0% | |
| TTTGGGAAAAAGGAAAAGAA+AGG | + | chr4.4:6548168-6548187 | MS.gene030429:CDS | 30.0% | |
| !! | TTTTGATTGCTCAGAAATAC+AGG | + | chr4.4:6547110-6547129 | MS.gene030429:CDS | 30.0% |
| AAAAAGTCACATAGAGACCA+AGG | - | chr4.4:6545993-6546012 | None:intergenic | 35.0% | |
| AAGTTCAACAGGAAATCACT+TGG | + | chr4.4:6546445-6546464 | MS.gene030429:intron | 35.0% | |
| AATGGTGACATGAGTTAAGA+AGG | + | chr4.4:6546619-6546638 | MS.gene030429:intron | 35.0% | |
| ACTGGACAAAATATATGGCA+AGG | - | chr4.4:6547563-6547582 | None:intergenic | 35.0% | |
| AGAATCTCCCAACAATATGA+AGG | - | chr4.4:6547320-6547339 | None:intergenic | 35.0% | |
| AGTCATCACCTTACAAGAAA+GGG | - | chr4.4:6547921-6547940 | None:intergenic | 35.0% | |
| CAGGAAATCACTTGGAATTT+CGG | + | chr4.4:6546453-6546472 | MS.gene030429:intron | 35.0% | |
| CTGGACAAAATATATGGCAA+GGG | - | chr4.4:6547562-6547581 | None:intergenic | 35.0% | |
| GTTCTACTCATCAAATTCGT+AGG | + | chr4.4:6546941-6546960 | MS.gene030429:CDS | 35.0% | |
| TAAAAGAAGGGAGATCTATG+AGG | - | chr4.4:6548199-6548218 | None:intergenic | 35.0% | |
| TAGTCATCACCTTACAAGAA+AGG | - | chr4.4:6547922-6547941 | None:intergenic | 35.0% | |
| TATTGCACCATTTAACACAG+AGG | - | chr4.4:6545957-6545976 | None:intergenic | 35.0% | |
| TTACAAAAGCAACAGGAAAG+TGG | + | chr4.4:6547787-6547806 | MS.gene030429:CDS | 35.0% | |
| TTAGAAACTGATCATAGGAC+TGG | - | chr4.4:6547581-6547600 | None:intergenic | 35.0% | |
| ! | AACGACTTTACTAGCTTAAG+GGG | + | chr4.4:6547349-6547368 | MS.gene030429:intron | 35.0% |
| ! | AGAACGACTTTACTAGCTTA+AGG | + | chr4.4:6547347-6547366 | MS.gene030429:intron | 35.0% |
| ! | CTTTTCCTTTTTCCCAAAGT+TGG | - | chr4.4:6548166-6548185 | None:intergenic | 35.0% |
| ! | CTTTTTGTTGCAAACTTCAC+AGG | - | chr4.4:6547867-6547886 | None:intergenic | 35.0% |
| ! | GAACGACTTTACTAGCTTAA+GGG | + | chr4.4:6547348-6547367 | MS.gene030429:intron | 35.0% |
| ! | TTTTGTCCTTCACTAACCAT+GGG | - | chr4.4:6547520-6547539 | None:intergenic | 35.0% |
| ! | TTTTTGTCCTTCACTAACCA+TGG | - | chr4.4:6547521-6547540 | None:intergenic | 35.0% |
| !! | ACTGACATGGTTTAATTTGC+AGG | + | chr4.4:6546846-6546865 | MS.gene030429:intron | 35.0% |
| !! | GTTTGATTTGCTAGAGAACA+GGG | - | chr4.4:6547638-6547657 | None:intergenic | 35.0% |
| !! | TGAAAAACCAATTTGGCTTG+AGG | + | chr4.4:6546888-6546907 | MS.gene030429:CDS | 35.0% |
| !! | TGTTTGATTTGCTAGAGAAC+AGG | - | chr4.4:6547639-6547658 | None:intergenic | 35.0% |
| !! | TTTGATTTGCTAGAGAACAG+GGG | - | chr4.4:6547637-6547656 | None:intergenic | 35.0% |
| AAAAGAGCCTCAAGCCAAAT+TGG | - | chr4.4:6546898-6546917 | None:intergenic | 40.0% | |
| CAAAATATATGGCAAGGGAC+TGG | - | chr4.4:6547557-6547576 | None:intergenic | 40.0% | |
| CGATCAAAGAGGACAATAAG+TGG | - | chr4.4:6547962-6547981 | None:intergenic | 40.0% | |
| CGTAGACTTACAAAAGCAAC+AGG | + | chr4.4:6547780-6547799 | MS.gene030429:intron | 40.0% | |
| GCACAGTAGCGATATAAATC+AGG | - | chr4.4:6547899-6547918 | None:intergenic | 40.0% | |
| TATCGAATGTGCGATCAAAG+AGG | - | chr4.4:6547973-6547992 | None:intergenic | 40.0% | |
| TTCAAAAAAGTCCGAGTCTG+AGG | + | chr4.4:6548048-6548067 | MS.gene030429:CDS | 40.0% | |
| TTGATGCTATCTCACTGAAC+TGG | - | chr4.4:6547832-6547851 | None:intergenic | 40.0% | |
| !! | GACATGGTTTAATTTGCAGG+AGG | + | chr4.4:6546849-6546868 | MS.gene030429:intron | 40.0% |
| AGTTGTCCCATGGTTAGTGA+AGG | + | chr4.4:6547511-6547530 | MS.gene030429:intron | 45.0% | |
| CTACTGTGCCCTTTCTTGTA+AGG | + | chr4.4:6547910-6547929 | MS.gene030429:CDS | 45.0% | |
| GGAACTTCTGGACCAACTTT+GGG | + | chr4.4:6548151-6548170 | MS.gene030429:CDS | 45.0% | |
| ! | CTGGACCAACTTTGGGAAAA+AGG | + | chr4.4:6548158-6548177 | MS.gene030429:CDS | 45.0% |
| ! | TGTTGTTGCTCTGAGTGCTA+TGG | + | chr4.4:6547080-6547099 | MS.gene030429:CDS | 45.0% |
| ! | TTTTGGATAGTCAGTACCCC+TGG | + | chr4.4:6547485-6547504 | MS.gene030429:intron | 45.0% |
| !! | TCAAGTGGTGTTGTGCTAAC+TGG | - | chr4.4:6548076-6548095 | None:intergenic | 45.0% |
| AACCATGGGACAACTTGTCC+AGG | - | chr4.4:6547506-6547525 | None:intergenic | 50.0% | |
| ACACCACTTGAGTCTTCCTC+AGG | + | chr4.4:6548085-6548104 | MS.gene030429:CDS | 50.0% | |
| ACCATGGGACAACTTGTCCA+GGG | - | chr4.4:6547505-6547524 | None:intergenic | 50.0% | |
| CAGCATCAGGAAACACAGGA+GGG | + | chr4.4:6548130-6548149 | MS.gene030429:CDS | 50.0% | |
| GAAACACAGGAGGGAACTTC+TGG | + | chr4.4:6548139-6548158 | MS.gene030429:CDS | 50.0% | |
| GCTAACTGGATCCTCAGACT+CGG | - | chr4.4:6548062-6548081 | None:intergenic | 50.0% | |
| GGGAACTTCTGGACCAACTT+TGG | + | chr4.4:6548150-6548169 | MS.gene030429:CDS | 50.0% | |
| TCAGCATCAGGAAACACAGG+AGG | + | chr4.4:6548129-6548148 | MS.gene030429:CDS | 50.0% | |
| TCCTCAGCATCAGGAAACAC+AGG | + | chr4.4:6548126-6548145 | MS.gene030429:CDS | 50.0% | |
| TCCTGTGTTTCCTGATGCTG+AGG | - | chr4.4:6548130-6548149 | None:intergenic | 50.0% | |
| TGTGTTTCCTGATGCTGAGG+AGG | - | chr4.4:6548127-6548146 | None:intergenic | 50.0% | |
| CCATGGGACAACTTGTCCAG+GGG | - | chr4.4:6547504-6547523 | None:intergenic | 55.0% | |
| GCTATCTCACTGAACTGGCG+AGG | - | chr4.4:6547827-6547846 | None:intergenic | 55.0% | |
| GGTCCTGAGGAAGACTCAAG+TGG | - | chr4.4:6548091-6548110 | None:intergenic | 55.0% | |
| TCCTCAGGACCTTCCATCCA+GGG | + | chr4.4:6548100-6548119 | MS.gene030429:CDS | 55.0% | |
| TTCCTCAGGACCTTCCATCC+AGG | + | chr4.4:6548099-6548118 | MS.gene030429:CDS | 55.0% | |
| ACCCTGGATGGAAGGTCCTG+AGG | - | chr4.4:6548104-6548123 | None:intergenic | 60.0% | |
| ATGCTGAGGAGGACCCTGGA+TGG | - | chr4.4:6548116-6548135 | None:intergenic | 60.0% | |
| CCCCTGGACAAGTTGTCCCA+TGG | + | chr4.4:6547501-6547520 | MS.gene030429:intron | 60.0% | |
| TGAGGAGGACCCTGGATGGA+AGG | - | chr4.4:6548112-6548131 | None:intergenic | 60.0% | |
| CCAGGGTCCTCCTCAGCATC+AGG | + | chr4.4:6548117-6548136 | MS.gene030429:CDS | 65.0% | |
| CCTGATGCTGAGGAGGACCC+TGG | - | chr4.4:6548120-6548139 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 6545886 | 6548219 | 6545886 | ID=MS.gene030429 |
| chr4.4 | mRNA | 6545886 | 6548219 | 6545886 | ID=MS.gene030429.t1;Parent=MS.gene030429 |
| chr4.4 | exon | 6545886 | 6545921 | 6545886 | ID=MS.gene030429.t1.exon1;Parent=MS.gene030429.t1 |
| chr4.4 | CDS | 6545886 | 6545921 | 6545886 | ID=cds.MS.gene030429.t1;Parent=MS.gene030429.t1 |
| chr4.4 | exon | 6546868 | 6547131 | 6546868 | ID=MS.gene030429.t1.exon2;Parent=MS.gene030429.t1 |
| chr4.4 | CDS | 6546868 | 6547131 | 6546868 | ID=cds.MS.gene030429.t1;Parent=MS.gene030429.t1 |
| chr4.4 | exon | 6547785 | 6547931 | 6547785 | ID=MS.gene030429.t1.exon3;Parent=MS.gene030429.t1 |
| chr4.4 | CDS | 6547785 | 6547931 | 6547785 | ID=cds.MS.gene030429.t1;Parent=MS.gene030429.t1 |
| chr4.4 | exon | 6548037 | 6548219 | 6548037 | ID=MS.gene030429.t1.exon4;Parent=MS.gene030429.t1 |
| chr4.4 | CDS | 6548037 | 6548219 | 6548037 | ID=cds.MS.gene030429.t1;Parent=MS.gene030429.t1 |
| Gene Sequence |
| Protein sequence |
