AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03043

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03043.t1 MTR_2g030660 90.881 658 50 3 1 657 1 649 0.0 1223
MS.gene03043.t1 MTR_2g030690 91.039 279 25 0 379 657 1 279 0.0 520
MS.gene03043.t1 MTR_2g030570 38.905 694 376 18 2 657 14 697 7.74e-146 440
MS.gene03043.t1 MTR_6g477820 35.524 715 383 16 7 655 21 723 2.91e-139 424
MS.gene03043.t1 MTR_2g030600 37.936 688 385 20 4 657 11 690 9.28e-137 416
MS.gene03043.t1 MTR_7g427710 34.904 679 359 19 10 655 10 638 5.00e-116 361
MS.gene03043.t1 MTR_4g047800 33.817 689 409 16 4 655 51 729 8.19e-113 355
MS.gene03043.t1 MTR_2g088470 33.676 680 412 14 8 655 60 732 6.71e-110 348
MS.gene03043.t1 MTR_5g029320 35.139 646 357 18 2 599 73 704 1.98e-109 348
MS.gene03043.t1 MTR_8g432540 32.911 711 413 20 3 655 102 806 1.17e-108 347
MS.gene03043.t1 MTR_7g076080 33.001 703 415 20 3 655 78 774 3.28e-108 345
MS.gene03043.t1 MTR_1g101280 32.624 705 397 20 17 655 58 750 2.75e-99 320
MS.gene03043.t1 MTR_2g101720 31.704 675 391 21 21 655 145 789 2.49e-93 306
MS.gene03043.t1 MTR_0198s0030 30.590 729 416 26 2 655 38 751 3.88e-92 301
MS.gene03043.t1 MTR_5g005600 30.846 697 425 20 4 656 34 717 3.41e-86 285
MS.gene03043.t1 MTR_2g030710 78.613 173 18 2 449 621 87 240 1.98e-75 242
MS.gene03043.t1 MTR_7g427690 36.658 371 205 9 181 540 60 411 1.41e-66 226
MS.gene03043.t1 MTR_2g083330 30.068 439 271 13 235 655 105 525 1.51e-47 176
MS.gene03043.t1 MTR_2g083350 30.134 448 278 12 231 657 105 538 1.76e-46 173
MS.gene03043.t1 MTR_7g427700 33.333 294 162 8 10 293 10 279 8.39e-42 157
MS.gene03043.t1 MTR_2g030720 48.466 163 73 4 1 160 1 155 1.37e-33 126
MS.gene03043.t1 MTR_2g451350 51.128 133 61 3 191 320 2 133 4.00e-32 121
MS.gene03043.t1 MTR_2g030700 46.626 163 79 5 1 160 1 158 6.12e-30 116
MS.gene03043.t1 MTR_2g030680 44.785 163 82 4 1 160 1 158 1.45e-29 115
MS.gene03043.t1 MTR_0653s0020 31.551 187 109 5 357 542 3 171 3.22e-23 98.2
MS.gene03043.t1 MTR_7g027265 41.026 117 62 1 17 126 19 135 1.83e-22 94.4
MS.gene03043.t1 MTR_2g451350 54.545 77 35 0 244 320 18 94 3.28e-21 89.0
MS.gene03043.t1 MTR_7g027605 51.648 91 41 2 264 352 2 91 1.75e-20 87.0
MS.gene03043.t1 MTR_6g027290 36.000 150 85 3 4 142 11 160 5.81e-20 88.2
MS.gene03043.t1 MTR_5g046040 43.220 118 59 2 17 126 35 152 1.91e-18 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03043.t1 AT1G73360 36.087 690 380 16 17 655 34 713 1.67e-133 409
MS.gene03043.t1 AT3G03260 38.177 702 371 23 4 657 9 695 2.64e-130 400
MS.gene03043.t1 AT1G17920 35.345 696 394 18 1 655 1 681 7.52e-124 383
MS.gene03043.t1 AT1G17920 35.345 696 394 18 1 655 1 681 7.52e-124 383
MS.gene03043.t1 AT5G17320 35.327 719 390 21 2 655 7 715 4.15e-121 377
MS.gene03043.t1 AT1G34650 36.561 692 375 17 22 657 23 706 5.84e-117 365
MS.gene03043.t1 AT1G05230 34.763 676 403 15 4 655 53 714 3.83e-113 356
MS.gene03043.t1 AT1G05230 34.564 677 405 15 4 655 53 716 1.75e-112 354
MS.gene03043.t1 AT1G05230 34.564 677 405 15 4 655 53 716 1.75e-112 354
MS.gene03043.t1 AT1G05230 34.564 677 405 15 4 655 53 716 1.75e-112 354
MS.gene03043.t1 AT1G05230 34.564 677 405 15 4 655 53 716 1.75e-112 354
MS.gene03043.t1 AT1G05230 34.564 677 405 15 4 655 53 716 1.75e-112 354
MS.gene03043.t1 AT1G05230 34.564 677 405 15 4 655 53 716 1.75e-112 354
MS.gene03043.t1 AT1G05230 34.564 677 405 15 4 655 53 716 1.75e-112 354
MS.gene03043.t1 AT1G05230 34.564 677 405 15 4 655 53 716 1.75e-112 354
MS.gene03043.t1 AT1G05230 34.564 677 405 15 4 655 53 716 1.75e-112 354
MS.gene03043.t1 AT1G05230 34.564 677 405 15 4 655 53 716 1.75e-112 354
MS.gene03043.t1 AT4G04890 33.716 697 407 15 4 655 49 735 6.67e-110 348
MS.gene03043.t1 AT4G04890 33.716 697 407 15 4 655 49 735 6.67e-110 348
MS.gene03043.t1 AT4G21750 33.333 705 399 15 14 655 61 757 9.86e-109 346
MS.gene03043.t1 AT4G21750 33.333 705 399 15 14 655 61 757 9.86e-109 346
MS.gene03043.t1 AT4G21750 33.333 705 399 15 14 655 61 757 9.86e-109 346
MS.gene03043.t1 AT4G21750 33.333 705 399 15 14 655 61 757 9.86e-109 346
MS.gene03043.t1 AT3G03260 40.414 532 280 15 4 506 9 532 2.07e-108 338
MS.gene03043.t1 AT3G61150 33.103 725 396 22 3 655 96 803 7.11e-108 345
MS.gene03043.t1 AT4G00730 33.091 689 414 17 3 655 121 798 1.11e-106 341
MS.gene03043.t1 AT1G05230 34.752 564 336 10 4 546 53 605 1.09e-95 307
MS.gene03043.t1 AT2G32370 30.059 682 419 17 4 647 52 713 1.22e-93 305
MS.gene03043.t1 AT1G79840 32.440 672 399 23 12 655 40 684 4.03e-92 300
MS.gene03043.t1 AT1G79840 32.440 672 399 23 12 655 40 684 4.03e-92 300
MS.gene03043.t1 AT1G79840 32.440 672 399 23 12 655 98 742 1.74e-91 300
MS.gene03043.t1 AT5G46880 32.594 721 409 26 2 657 100 808 5.67e-91 300
MS.gene03043.t1 AT5G46880 32.594 721 409 26 2 657 100 808 5.67e-91 300
MS.gene03043.t1 AT5G46880 32.594 721 409 26 2 657 100 808 5.67e-91 300
MS.gene03043.t1 AT1G79840 32.440 672 399 23 12 655 127 771 8.30e-91 299
MS.gene03043.t1 AT5G52170 31.515 660 383 17 21 655 63 678 8.56e-91 296
MS.gene03043.t1 AT5G52170 31.515 660 383 17 21 655 63 678 8.56e-91 296
MS.gene03043.t1 AT5G52170 31.364 660 389 15 21 655 63 683 1.17e-90 296
MS.gene03043.t1 AT4G17710 31.202 657 395 20 17 657 90 705 1.98e-83 277
MS.gene03043.t1 AT1G79840 32.601 546 328 16 12 540 98 620 8.67e-78 260
MS.gene03043.t1 AT4G00730 35.142 424 245 9 3 401 121 539 1.54e-73 248
MS.gene03043.t1 AT4G25530 27.628 666 458 11 2 655 29 682 1.17e-72 248
MS.gene03043.t1 AT1G79840 33.741 409 236 14 12 405 98 486 3.74e-59 207
MS.gene03043.t1 AT5G07260 23.927 606 352 25 75 655 11 532 6.89e-27 115
MS.gene03043.t1 AT5G07260 23.732 611 352 25 75 655 11 537 3.26e-26 113

Find 109 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTTGGTCGACATGTTTC+TGG 0.149362 2.1:-60698474 MS.gene03043:CDS
AAAGCTCCACTTTGACTTTC+TGG 0.209562 2.1:+60698187 None:intergenic
AATAATCTTCACACCATCTT+TGG 0.210210 2.1:+60695869 None:intergenic
TTCAACTCTTGTGTGTTTAC+AGG 0.236305 2.1:+60695801 None:intergenic
GAAGTTCCATGAGCCATCTT+TGG 0.238463 2.1:+60697690 None:intergenic
AGAGTTGACCACTACTTTAA+TGG 0.241174 2.1:-60698554 MS.gene03043:CDS
TACAAGTTGAAGCTGGTATC+TGG 0.264489 2.1:-60698007 MS.gene03043:CDS
TGAAGTTGTTTCAAACTATT+AGG 0.271208 2.1:+60699009 None:intergenic
TCAAAGTGGAGCTTTGTTAT+TGG 0.273622 2.1:-60698179 MS.gene03043:intron
GATTCACAAATGGTGAAAAT+TGG 0.281622 2.1:-60698503 MS.gene03043:CDS
GTCAACAATGCTATTGCATT+TGG 0.284967 2.1:-60697716 MS.gene03043:CDS
GCGCGGAGAGCATCGTTATC+TGG 0.316509 2.1:+60699111 None:intergenic
GTGGCTCAAGCTCAAGCTCC+TGG 0.323796 2.1:+60699305 None:intergenic
CCACTATGTATCAATTATTC+AGG 0.339498 2.1:-60696607 MS.gene03043:intron
TGATGATTCAACATGTGTTT+TGG 0.340849 2.1:+60698529 None:intergenic
GTCTCTTTCAAGCACTTTGA+TGG 0.342907 2.1:+60698213 None:intergenic
AAGTTCCATGAGCCATCTTT+GGG 0.351674 2.1:+60697691 None:intergenic
AGAATGTTTCATAGACCCTT+TGG 0.370185 2.1:-60695844 MS.gene03043:CDS
TGAACCTCAAAACGTCTTGC+CGG 0.371480 2.1:+60696788 None:intergenic
TAATAGTTTGAAACAACTTC+AGG 0.374417 2.1:-60699007 MS.gene03043:CDS
GGTCGACATGTTTCTGGATT+CGG 0.374726 2.1:-60698468 MS.gene03043:intron
TCAGCTTTGCTAACAATAGT+TGG 0.380163 2.1:+60698238 None:intergenic
AACATGCTCTACTTAATTAG+TGG 0.387024 2.1:-60695557 None:intergenic
AAGCTCCACTTTGACTTTCT+GGG 0.391206 2.1:+60698188 None:intergenic
CTCATGGAACTTCAAAGAAT+TGG 0.391578 2.1:-60697680 MS.gene03043:CDS
AATTCTCGTGGTTTCACTAA+AGG 0.397068 2.1:+60698050 None:intergenic
TTTCCGCGATGAGTCCTTAT+GGG 0.399067 2.1:-60698636 MS.gene03043:CDS
AGTCCAGCCACCAACATCAT+TGG 0.401935 2.1:+60698686 None:intergenic
ATTACACATCTCCTTCCTTC+AGG 0.404458 2.1:+60697034 None:intergenic
ATGCTGATGACAGCGGGGTT+AGG 0.405153 2.1:-60696928 MS.gene03043:CDS
ATAATCTTCACACCATCTTT+GGG 0.405420 2.1:+60695870 None:intergenic
GAAAATTGGAGCAAGACATT+TGG 0.407628 2.1:-60698489 MS.gene03043:CDS
GAAAGAGAACATGGAAATGA+AGG 0.408587 2.1:-60699070 MS.gene03043:CDS
AAACACACAAGAGTTGAATA+TGG 0.410220 2.1:-60695796 MS.gene03043:CDS
TATTAGGATCATTACATGAT+TGG 0.413021 2.1:+60699025 None:intergenic
GAATGTTTCATAGACCCTTT+GGG 0.421156 2.1:-60695843 MS.gene03043:CDS
AAACAAAAGAGCACAGGTTA+AGG 0.425246 2.1:-60699260 MS.gene03043:intron
ACTTGCACATCAGGTTGTTA+AGG 0.426416 2.1:-60697008 MS.gene03043:CDS
CACTGTCAGCAACGAAGCTC+TGG 0.427629 2.1:+60695677 None:intergenic
TGTAATGAAACTTGCACATC+AGG 0.446823 2.1:-60697017 MS.gene03043:CDS
GTCCAGCCACCAACATCATT+GGG 0.447296 2.1:+60698687 None:intergenic
CTCTTATGATTACTTGAAAG+AGG 0.447977 2.1:-60697970 MS.gene03043:CDS
TTAAAGTAGTGGTCAACTCT+AGG 0.461640 2.1:+60698557 None:intergenic
TTAGTTTCACCTCCCAAAGA+TGG 0.462946 2.1:-60695882 MS.gene03043:CDS
AAAATGAACGTCTCAAAGAA+AGG 0.465144 2.1:-60698981 MS.gene03043:CDS
TTGCTGATGCTGATGACAGC+GGG 0.466069 2.1:-60696934 MS.gene03043:CDS
TTTCGACTTCTTAAGAGATC+CGG 0.468769 2.1:-60696807 MS.gene03043:CDS
AACCACCACTTCACTTGTTG+TGG 0.474712 2.1:+60699286 None:intergenic
GAAATTGCACACATCTCTAC+TGG 0.475230 2.1:-60696642 MS.gene03043:CDS
TATCTTGTTCATCACCTGAT+AGG 0.476594 2.1:+60701138 None:intergenic
GTGTCACTTATAATTCCATC+AGG 0.478904 2.1:-60695747 MS.gene03043:CDS
CTAGCAACAATAACAATGAA+TGG 0.487236 2.1:+60696863 None:intergenic
GAAATTCACTTCCAAGGTCC+AGG 0.488853 2.1:-60698829 MS.gene03043:CDS
TTGCATTTGGAGCCCAAAGA+TGG 0.489863 2.1:-60697703 MS.gene03043:CDS
TGAGCCTCTATCTAGATTCA+AGG 0.490503 2.1:+60698739 None:intergenic
TATGATTACTTGAAAGAGGA+TGG 0.498521 2.1:-60697966 MS.gene03043:CDS
GTGACACATTTGATAAATCA+TGG 0.499449 2.1:+60695763 None:intergenic
AATAATTGATACATAGTGGT+TGG 0.500783 2.1:+60696611 None:intergenic
ACCTCCTTGAATCTAGATAG+AGG 0.506046 2.1:-60698743 MS.gene03043:CDS
GATTCAAAATTTGCAACAAG+AGG 0.507082 2.1:+60695630 None:intergenic
TTGGATTGAGCATGTGGAAG+TGG 0.507994 2.1:-60697777 MS.gene03043:CDS
GGTGGCTGGACTTGCTGCCA+CGG 0.512282 2.1:-60698675 MS.gene03043:CDS
AAATTTGCAACAAGAGGACT+AGG 0.517166 2.1:+60695636 None:intergenic
CCTGAATAATTGATACATAG+TGG 0.522975 2.1:+60696607 None:intergenic
ATCATCAAAAGATTCACAAA+TGG 0.526011 2.1:-60698513 MS.gene03043:CDS
TGGCTCAAGCTCAAGCTCCT+GGG 0.527865 2.1:+60699306 None:intergenic
AACCCAATGATGTTGGTGGC+TGG 0.530454 2.1:-60698689 MS.gene03043:CDS
TAAAGTAGTGGTCAACTCTA+GGG 0.531595 2.1:+60698558 None:intergenic
AAGCTGAGACTTAACCCATA+AGG 0.535338 2.1:+60698622 None:intergenic
TGGAGCCCAAAGATGGCTCA+TGG 0.538769 2.1:-60697696 MS.gene03043:CDS
AAATGAACGTCTCAAAGAAA+GGG 0.541119 2.1:-60698980 MS.gene03043:intron
ACAAGTTGAAGCTGGTATCT+GGG 0.544022 2.1:-60698006 MS.gene03043:CDS
AGCTCCACTTTGACTTTCTG+GGG 0.544796 2.1:+60698189 None:intergenic
CTCTCCGCGCTGAAAATGAA+AGG 0.545522 2.1:-60699098 MS.gene03043:CDS
AGTCGAAAACAATATGAGAC+GGG 0.556073 2.1:+60696822 None:intergenic
GGTTTCTTGGATTGAGCATG+TGG 0.560486 2.1:-60697783 MS.gene03043:CDS
ATAATTGATACATAGTGGTT+GGG 0.560512 2.1:+60696612 None:intergenic
AATACAAAACCCAATGATGT+TGG 0.560670 2.1:-60698696 MS.gene03043:CDS
ATGTGTGCAATTTCATGCCA+TGG 0.566418 2.1:+60696651 None:intergenic
GAGTTGAATATGGCAATGAA+TGG 0.573412 2.1:-60695786 MS.gene03043:CDS
AATATCTAATGAGACTTCCA+AGG 0.574407 2.1:-60697895 MS.gene03043:intron
GACTCCCCAGAAAGTCAAAG+TGG 0.577198 2.1:-60698193 MS.gene03043:CDS
CAGAGCTTCGTTGCTGACAG+TGG 0.581761 2.1:-60695676 MS.gene03043:CDS
TTATGCTACGTACAGATGCA+TGG 0.588414 2.1:-60698092 MS.gene03043:intron
AAGTCGAAAACAATATGAGA+CGG 0.588442 2.1:+60696821 None:intergenic
TGATGGGAAATTCACTTCCA+AGG 0.591880 2.1:-60698835 MS.gene03043:CDS
GTTTCAAAACAAAAGAGCAC+AGG 0.592799 2.1:-60699266 MS.gene03043:CDS
AAACAACATAGGATCCCAAA+GGG 0.596630 2.1:+60695829 None:intergenic
CGAAGAAAGTAAAATTCTCG+TGG 0.597375 2.1:+60698038 None:intergenic
AGCCACAACAAGTGAAGTGG+TGG 0.600152 2.1:-60699288 MS.gene03043:CDS
TATTGCGTACAAGTTGAAGC+TGG 0.606947 2.1:-60698014 MS.gene03043:CDS
AAAACAATATGAGACGGGAG+AGG 0.618201 2.1:+60696827 None:intergenic
TCAGTGGTTACATTACCTGA+AGG 0.618247 2.1:-60697049 MS.gene03043:intron
AAATTCACTTCCAAGGTCCA+GGG 0.620783 2.1:-60698828 MS.gene03043:CDS
TACAGGAGAATAAACAACAT+AGG 0.623592 2.1:+60695818 None:intergenic
TGGTTACATTACCTGAAGGA+AGG 0.625611 2.1:-60697045 MS.gene03043:CDS
ATCTTCACACCATCTTTGGG+AGG 0.626342 2.1:+60695873 None:intergenic
CTTCCTAAAAGCTCGACACG+TGG 0.628257 2.1:-60698770 MS.gene03043:CDS
AAGCTTAAGCAACTCTTCCG+TGG 0.628294 2.1:+60698658 None:intergenic
TTGAGCCACAACAAGTGAAG+TGG 0.628334 2.1:-60699291 MS.gene03043:CDS
TAAACAACATAGGATCCCAA+AGG 0.631648 2.1:+60695828 None:intergenic
TCAGCATCAGCAAAGTATTG+TGG 0.632074 2.1:+60696944 None:intergenic
ACAAAACCCAATGATGTTGG+TGG 0.641799 2.1:-60698693 MS.gene03043:CDS
TCTTTGGGAGGTGAAACTAA+AGG 0.644412 2.1:+60695885 None:intergenic
AGACGGGAGAGGTATCAAAA+CGG 0.645863 2.1:+60696838 None:intergenic
TTTGCTGATGCTGATGACAG+CGG 0.677579 2.1:-60696935 MS.gene03043:CDS
TGCTGATGCTGATGACAGCG+GGG 0.703574 2.1:-60696933 MS.gene03043:CDS
GCCTCTATCTAGATTCAAGG+AGG 0.723251 2.1:+60698742 None:intergenic
TAACCCATAAGGACTCATCG+CGG 0.774250 2.1:+60698633 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTTAATTAATAAATTA+TGG + chr2.1:60699510-60699529 None:intergenic 0.0%
!! ATATTATATTATATTTCATC+CGG - chr2.1:60696236-60696255 MS.gene03043:intron 10.0%
!! ATTCTCTTATAAATAAAATA+TGG + chr2.1:60700128-60700147 None:intergenic 10.0%
!! TGATGAATATTTAATTAATT+AGG - chr2.1:60697190-60697209 MS.gene03043:intron 10.0%
!! TTTAAAGAGAAAAAAATTAT+AGG - chr2.1:60696531-60696550 MS.gene03043:intron 10.0%
!!! AAATTTTAAAATTGATTTTG+TGG + chr2.1:60696514-60696533 None:intergenic 10.0%
!!! AATTTTAAAATTGATTTTGT+GGG + chr2.1:60696513-60696532 None:intergenic 10.0%
!!! ATATGGTTTTTTTTTTTTAA+TGG + chr2.1:60697124-60697143 None:intergenic 10.0%
!!! TTAATACCAAATTTTAATTT+TGG + chr2.1:60700772-60700791 None:intergenic 10.0%
!!! TTTAATTTTAAAAGAATATC+AGG - chr2.1:60695846-60695865 MS.gene03043:CDS 10.0%
!!! TTTATTTATTTTCATTTGAT+AGG - chr2.1:60695685-60695704 MS.gene03043:CDS 10.0%
!!! TTTTAACCAAAATTAAAATT+TGG - chr2.1:60700763-60700782 MS.gene03043:intron 10.0%
!! AAAGTTTCATAAAATACAAT+AGG - chr2.1:60700677-60700696 MS.gene03043:intron 15.0%
!! AAGATTGACATTTAATTATA+TGG - chr2.1:60696201-60696220 MS.gene03043:intron 15.0%
!! AATTAAATAATTAATCCAAC+AGG - chr2.1:60699519-60699538 MS.gene03043:intron 15.0%
!! ATATAATTAAATGTCAATCT+TGG + chr2.1:60696202-60696221 None:intergenic 15.0%
!! CATTATAGAAACTTAATATA+TGG + chr2.1:60697141-60697160 None:intergenic 15.0%
!! GAATACTAAAGAAAATTATA+AGG + chr2.1:60699590-60699609 None:intergenic 15.0%
!! TAGTTAAATAGGTTAAATAA+TGG + chr2.1:60699559-60699578 None:intergenic 15.0%
!! TGATGTCATAATATAAATTA+TGG + chr2.1:60699461-60699480 None:intergenic 15.0%
!! TTATTAGTACTTGAAATTAA+TGG - chr2.1:60698402-60698421 MS.gene03043:intron 15.0%
!!! CAATTATATTATATTTTCTC+CGG - chr2.1:60696017-60696036 MS.gene03043:intron 15.0%
!!! GAAACATATGTTTAATTTTT+AGG - chr2.1:60698899-60698918 MS.gene03043:intron 15.0%
!!! TCAATACAATATCATTTTAT+TGG - chr2.1:60697002-60697021 MS.gene03043:CDS 15.0%
!!! TTTTAAACTTATCATTCAAT+TGG - chr2.1:60697273-60697292 MS.gene03043:intron 15.0%
!! AAAAAAATTCTATGCAACAA+TGG + chr2.1:60696903-60696922 None:intergenic 20.0%
!! AAACGAAGAAAAATATTTGA+AGG + chr2.1:60698558-60698577 None:intergenic 20.0%
!! AATTTGTATCTATTGATCTA+TGG + chr2.1:60699128-60699147 None:intergenic 20.0%
!! AGATAATTAAATGTCAATCT+TGG + chr2.1:60696425-60696444 None:intergenic 20.0%
!! TAGTATGTTATATCAATTAG+TGG + chr2.1:60697524-60697543 None:intergenic 20.0%
!! TCAAAATGTCTCTTATAAAA+AGG - chr2.1:60696346-60696365 MS.gene03043:intron 20.0%
!! TCAAAATGTCTCTTATAAAT+AGG - chr2.1:60696123-60696142 MS.gene03043:intron 20.0%
!! TCAACAAATATTGATGTATT+TGG + chr2.1:60696103-60696122 None:intergenic 20.0%
!! TGTCAATTCAATAAATGAAT+CGG + chr2.1:60700560-60700579 None:intergenic 20.0%
!! TTCAAAATTTAGGCTTATTA+GGG - chr2.1:60700324-60700343 MS.gene03043:intron 20.0%
!! TTTCAAAATTTAGGCTTATT+AGG - chr2.1:60700323-60700342 MS.gene03043:intron 20.0%
!!! AACATTTTTTTTCTTCAATG+TGG - chr2.1:60700790-60700809 MS.gene03043:intron 20.0%
!!! AAGTTTTTTCATGTTTCAAA+AGG - chr2.1:60696950-60696969 MS.gene03043:CDS 20.0%
!!! AATTGTTTTTTTTTTTGTGG+TGG - chr2.1:60696712-60696731 MS.gene03043:intron 20.0%
!!! ACAAAAGTACAAGAATAAAA+GGG + chr2.1:60700362-60700381 None:intergenic 20.0%
!!! GTCAATTGTTTTTTTTTTTG+TGG - chr2.1:60696709-60696728 MS.gene03043:intron 20.0%
!!! TACAAAAGTACAAGAATAAA+AGG + chr2.1:60700363-60700382 None:intergenic 20.0%
!!! TAGGATTGTTTCAATTATTT+TGG - chr2.1:60700292-60700311 MS.gene03043:intron 20.0%
!!! TGAATTTTGATAACATGTTA+GGG - chr2.1:60698587-60698606 MS.gene03043:CDS 20.0%
!!! TGTTTAATTTTTAGGTTTCT+TGG - chr2.1:60698907-60698926 MS.gene03043:intron 20.0%
!!! TTCATTTATATACTTTTCAG+TGG - chr2.1:60699638-60699657 MS.gene03043:intron 20.0%
!!! TTGAATTTTGATAACATGTT+AGG - chr2.1:60698586-60698605 MS.gene03043:CDS 20.0%
!!! TTTCATTTGATAGGTTTTTT+AGG - chr2.1:60695694-60695713 MS.gene03043:CDS 20.0%
! AAATTGTGTACCTTTGAATT+AGG - chr2.1:60699181-60699200 MS.gene03043:intron 25.0%
! AACATACAATTACACAAGTT+AGG - chr2.1:60700626-60700645 MS.gene03043:intron 25.0%
! AAGTCTCTTATAAATAAGAC+CGG + chr2.1:60696039-60696058 None:intergenic 25.0%
! AATAATTGATACATAGTGGT+TGG + chr2.1:60700095-60700114 None:intergenic 25.0%
! ACATACAATTACACAAGTTA+GGG - chr2.1:60700627-60700646 MS.gene03043:intron 25.0%
! AGAATAATTAACCGTCTAAT+GGG - chr2.1:60699295-60699314 MS.gene03043:CDS 25.0%
! ATAATTGATACATAGTGGTT+GGG + chr2.1:60700094-60700113 None:intergenic 25.0%
! ATATGATGAATTTGAGTGAT+TGG + chr2.1:60699416-60699435 None:intergenic 25.0%
! ATCATCAAAAGATTCACAAA+TGG - chr2.1:60698190-60698209 MS.gene03043:CDS 25.0%
! ATGACGTTTAAATAGCTAAA+CGG - chr2.1:60699318-60699337 MS.gene03043:CDS 25.0%
! ATGATATTGTATTGAAGTCA+TGG + chr2.1:60696997-60697016 None:intergenic 25.0%
! GATCTCAATAAAAATCATTG+TGG + chr2.1:60698287-60698306 None:intergenic 25.0%
! TAAATGTCAATCTTGGTATA+TGG + chr2.1:60696195-60696214 None:intergenic 25.0%
! TATGATGAATTTGAGTGATT+GGG + chr2.1:60699415-60699434 None:intergenic 25.0%
! TATTAGGATCATTACATGAT+TGG + chr2.1:60697681-60697700 None:intergenic 25.0%
! TATTATATACGTACTAACCT+TGG + chr2.1:60698828-60698847 None:intergenic 25.0%
! TTAGTACTTGAAATTAATGG+TGG - chr2.1:60698405-60698424 MS.gene03043:intron 25.0%
!! AATTTTCTGTCTAGGAAAAA+TGG - chr2.1:60698430-60698449 MS.gene03043:intron 25.0%
!! AGGAGTTTTCTTAGTTAAAT+AGG + chr2.1:60699570-60699589 None:intergenic 25.0%
!! ATTTTCTGTCTAGGAAAAAT+GGG - chr2.1:60698431-60698450 MS.gene03043:intron 25.0%
!! CAAAAGTACAAGAATAAAAG+GGG + chr2.1:60700361-60700380 None:intergenic 25.0%
!! GTTAATTATTTTCATGCAGT+GGG - chr2.1:60700009-60700028 MS.gene03043:intron 25.0%
!! TAAAATTTTCTTCCGTTACA+AGG + chr2.1:60700535-60700554 None:intergenic 25.0%
!! TAATAGTTTGAAACAACTTC+AGG - chr2.1:60697696-60697715 MS.gene03043:CDS 25.0%
!! TACAAGCATTTTTATGACAA+TGG - chr2.1:60699074-60699093 MS.gene03043:CDS 25.0%
!! TATGTTCATTTGAAATGACA+TGG + chr2.1:60700224-60700243 None:intergenic 25.0%
!! TGAAGTTGTTTCAAACTATT+AGG + chr2.1:60697697-60697716 None:intergenic 25.0%
!! TGTTAATTATTTTCATGCAG+TGG - chr2.1:60700008-60700027 MS.gene03043:intron 25.0%
!!! AAGCCTAAATTTTGAAAAGT+TGG + chr2.1:60700320-60700339 None:intergenic 25.0%
!!! ACAAGATTTTTTCTTTCGAA+AGG + chr2.1:60696839-60696858 None:intergenic 25.0%
!!! TCTTTTTAGTATGAGATGAT+GGG - chr2.1:60697852-60697871 MS.gene03043:intron 25.0%
!!! TGATATTTTTGGTTATCATC+TGG + chr2.1:60697372-60697391 None:intergenic 25.0%
!!! TTCTTTTTAGTATGAGATGA+TGG - chr2.1:60697851-60697870 MS.gene03043:intron 25.0%
!!! TTGATGTGTAAATTGTTTTG+TGG - chr2.1:60700735-60700754 MS.gene03043:intron 25.0%
!!! TTTTTTTTTTTGTGGTGGTT+GGG - chr2.1:60696717-60696736 MS.gene03043:intron 25.0%
AAAATGAACGTCTCAAAGAA+AGG - chr2.1:60697722-60697741 MS.gene03043:CDS 30.0%
AAACACACAAGAGTTGAATA+TGG - chr2.1:60700907-60700926 MS.gene03043:intron 30.0%
AAATGAACGTCTCAAAGAAA+GGG - chr2.1:60697723-60697742 MS.gene03043:CDS 30.0%
AAGTCGAAAACAATATGAGA+CGG + chr2.1:60699885-60699904 None:intergenic 30.0%
AATAATCTTCACACCATCTT+TGG + chr2.1:60700837-60700856 None:intergenic 30.0%
AATACAAAACCCAATGATGT+TGG - chr2.1:60698007-60698026 MS.gene03043:CDS 30.0%
AATATCTAATGAGACTTCCA+AGG - chr2.1:60698808-60698827 MS.gene03043:CDS 30.0%
AATTCTATGCAACAATGGAA+TGG + chr2.1:60696898-60696917 None:intergenic 30.0%
ATAATCTTCACACCATCTTT+GGG + chr2.1:60700836-60700855 None:intergenic 30.0%
ATCGGATGATTAAAATCTCA+AGG - chr2.1:60695815-60695834 MS.gene03043:CDS 30.0%
ATGTCTCTTATAAAAAGGAC+CGG - chr2.1:60696351-60696370 MS.gene03043:intron 30.0%
ATGTCTCTTATAAATAGGAC+CGG - chr2.1:60696128-60696147 MS.gene03043:intron 30.0%
CAATTCTTCAAATCCAACTT+AGG + chr2.1:60697060-60697079 None:intergenic 30.0%
CAGAATAATTAACCGTCTAA+TGG - chr2.1:60699294-60699313 MS.gene03043:CDS 30.0%
CCACTATGTATCAATTATTC+AGG - chr2.1:60700096-60700115 MS.gene03043:intron 30.0%
CCTGAATAATTGATACATAG+TGG + chr2.1:60700099-60700118 None:intergenic 30.0%
CTCTTATGATTACTTGAAAG+AGG - chr2.1:60698733-60698752 MS.gene03043:CDS 30.0%
GATTCAAAATTTGCAACAAG+AGG + chr2.1:60701076-60701095 None:intergenic 30.0%
GATTCACAAATGGTGAAAAT+TGG - chr2.1:60698200-60698219 MS.gene03043:CDS 30.0%
GTGACACATTTGATAAATCA+TGG + chr2.1:60700943-60700962 None:intergenic 30.0%
GTTTCTATAATGATGCTTCA+TGG - chr2.1:60697149-60697168 MS.gene03043:intron 30.0%
TACAGGAGAATAAACAACAT+AGG + chr2.1:60700888-60700907 None:intergenic 30.0%
TAGGATTCAATTTCGCTTAT+TGG - chr2.1:60695713-60695732 MS.gene03043:CDS 30.0%
TATGATTACTTGAAAGAGGA+TGG - chr2.1:60698737-60698756 MS.gene03043:CDS 30.0%
TCAAAGTGAAACAATTCCTA+GGG + chr2.1:60700454-60700473 None:intergenic 30.0%
TCCATACTATTTGATCTTAG+TGG + chr2.1:60695944-60695963 None:intergenic 30.0%
TGTGTGATCAAAATGAATCT+AGG - chr2.1:60700273-60700292 MS.gene03043:intron 30.0%
TTCAAAGTGAAACAATTCCT+AGG + chr2.1:60700455-60700474 None:intergenic 30.0%
TTGATGCCTTTCTTATATCT+CGG - chr2.1:60700410-60700429 MS.gene03043:intron 30.0%
! AAGCATTTTTATGACAATGG+AGG - chr2.1:60699077-60699096 MS.gene03043:CDS 30.0%
! ATTGGGCTTTTGTTACTAAA+TGG + chr2.1:60699398-60699417 None:intergenic 30.0%
! CGGTTAATTATTCTGAAGAT+TGG + chr2.1:60699289-60699308 None:intergenic 30.0%
! GTGCCAACTTTTCAAAATTT+AGG - chr2.1:60700314-60700333 MS.gene03043:intron 30.0%
! TACACAATAGACTTAGGTTT+TGG - chr2.1:60700492-60700511 MS.gene03043:intron 30.0%
! TATGTTGTGACATTTTCAGA+TGG + chr2.1:60700612-60700631 None:intergenic 30.0%
! TGATGATTCAACATGTGTTT+TGG + chr2.1:60698177-60698196 None:intergenic 30.0%
! TTCATTTGAAATGACATGGA+AGG + chr2.1:60700220-60700239 None:intergenic 30.0%
! TTTTGAATCAAACATCCAGA+AGG + chr2.1:60698788-60698807 None:intergenic 30.0%
!! AACTTGTTGATTTACAACTC+AGG - chr2.1:60700386-60700405 MS.gene03043:intron 30.0%
!! AAGGATTTTGAAAGAGAACA+TGG - chr2.1:60697624-60697643 MS.gene03043:intron 30.0%
!! AATCCAACTTAGGTTGATTT+AGG + chr2.1:60697050-60697069 None:intergenic 30.0%
!! ACTTGTTGATTTACAACTCA+GGG - chr2.1:60700387-60700406 MS.gene03043:intron 30.0%
!!! GTTTTTTTTTTTGTGGTGGT+TGG - chr2.1:60696716-60696735 MS.gene03043:intron 30.0%
AAACAACATAGGATCCCAAA+GGG + chr2.1:60700877-60700896 None:intergenic 35.0%
AAATTTGCAACAAGAGGACT+AGG + chr2.1:60701070-60701089 None:intergenic 35.0%
AACCTCCAAAAAGAAGAATG+AGG + chr2.1:60698764-60698783 None:intergenic 35.0%
AATTCTCGTGGTTTCACTAA+AGG + chr2.1:60698656-60698675 None:intergenic 35.0%
ACGTTCTACACAATAGACTT+AGG - chr2.1:60700486-60700505 MS.gene03043:intron 35.0%
AGAATGTTTCATAGACCCTT+TGG - chr2.1:60700859-60700878 MS.gene03043:intron 35.0%
AGAGTTGACCACTACTTTAA+TGG - chr2.1:60698149-60698168 MS.gene03043:intron 35.0%
AGGACAATGCAATATATGCA+AGG + chr2.1:60696756-60696775 None:intergenic 35.0%
AGTCGAAAACAATATGAGAC+GGG + chr2.1:60699884-60699903 None:intergenic 35.0%
ATATGTTCTCCACACAAATG+AGG + chr2.1:60700254-60700273 None:intergenic 35.0%
ATTTAGATAAGCCCAATGAG+AGG + chr2.1:60699357-60699376 None:intergenic 35.0%
CCAAAAATATCAAATAGCCC+AGG - chr2.1:60697380-60697399 MS.gene03043:intron 35.0%
CCTTCATCAACCTAATTCAA+AGG + chr2.1:60699194-60699213 None:intergenic 35.0%
CGAAGAAAGTAAAATTCTCG+TGG + chr2.1:60698668-60698687 None:intergenic 35.0%
CGATCTCAATCAAACAATCA+CGG + chr2.1:60695799-60695818 None:intergenic 35.0%
CGTGATTGTTTGATTGAGAT+CGG - chr2.1:60695797-60695816 MS.gene03043:CDS 35.0%
CTCATGGAACTTCAAAGAAT+TGG - chr2.1:60699023-60699042 MS.gene03043:CDS 35.0%
CTTTGATCTCATTACACAAC+AGG - chr2.1:60696169-60696188 MS.gene03043:intron 35.0%
GAAAATTGGAGCAAGACATT+TGG - chr2.1:60698214-60698233 MS.gene03043:CDS 35.0%
GAAAGAGAACATGGAAATGA+AGG - chr2.1:60697633-60697652 MS.gene03043:CDS 35.0%
GAATGTTTCATAGACCCTTT+GGG - chr2.1:60700860-60700879 MS.gene03043:intron 35.0%
GAGTTGAATATGGCAATGAA+TGG - chr2.1:60700917-60700936 MS.gene03043:intron 35.0%
GCCACTAAGATCAAATAGTA+TGG - chr2.1:60695940-60695959 MS.gene03043:intron 35.0%
GTAAAACTCACAGATTACAC+AGG - chr2.1:60697024-60697043 MS.gene03043:CDS 35.0%
GTCAACAATGCTATTGCATT+TGG - chr2.1:60698987-60699006 MS.gene03043:CDS 35.0%
GTGTTGCAAACATGATCAAT+TGG + chr2.1:60696809-60696828 None:intergenic 35.0%
TAAACAACATAGGATCCCAA+AGG + chr2.1:60700878-60700897 None:intergenic 35.0%
TAAAGTAGTGGTCAACTCTA+GGG + chr2.1:60698148-60698167 None:intergenic 35.0%
TACACAAGTTAGGGATTTCT+TGG - chr2.1:60700636-60700655 MS.gene03043:intron 35.0%
TATCGAATATAGGTATCCTG+CGG - chr2.1:60695743-60695762 MS.gene03043:CDS 35.0%
TATCTTGTTCATCACCTGAT+AGG + chr2.1:60695568-60695587 None:intergenic 35.0%
TCAATTTCGCTTATTGGTGA+AGG - chr2.1:60695719-60695738 MS.gene03043:CDS 35.0%
TCAGCTTTGCTAACAATAGT+TGG + chr2.1:60698468-60698487 None:intergenic 35.0%
TCTCATTGGGCTTATCTAAA+TGG - chr2.1:60699356-60699375 MS.gene03043:CDS 35.0%
TGATGCCTTTCTTATATCTC+GGG - chr2.1:60700411-60700430 MS.gene03043:intron 35.0%
TGGTGAAGGATATCGAATAT+AGG - chr2.1:60695733-60695752 MS.gene03043:CDS 35.0%
TGTAATGAAACTTGCACATC+AGG - chr2.1:60699686-60699705 MS.gene03043:intron 35.0%
TTAAACGTCATCCCATTAGA+CGG + chr2.1:60699309-60699328 None:intergenic 35.0%
TTAAAGTAGTGGTCAACTCT+AGG + chr2.1:60698149-60698168 None:intergenic 35.0%
TTAAATAGCTAAACGGCTGA+GGG - chr2.1:60699325-60699344 MS.gene03043:CDS 35.0%
TTCAACTCTTGTGTGTTTAC+AGG + chr2.1:60700905-60700924 None:intergenic 35.0%
TTGTGTAGAACGTTTAACAC+AGG + chr2.1:60700479-60700498 None:intergenic 35.0%
TTTAAATAGCTAAACGGCTG+AGG - chr2.1:60699324-60699343 MS.gene03043:CDS 35.0%
TTTCGACTTCTTAAGAGATC+CGG - chr2.1:60699896-60699915 MS.gene03043:intron 35.0%
! AAACAAAAGAGCACAGGTTA+AGG - chr2.1:60697443-60697462 MS.gene03043:intron 35.0%
! AAATCCTTTCATTTTCAGCG+CGG + chr2.1:60697612-60697631 None:intergenic 35.0%
! ATGGACCTCATTCTTCTTTT+TGG - chr2.1:60698756-60698775 MS.gene03043:CDS 35.0%
! CCTGGGCTATTTGATATTTT+TGG + chr2.1:60697383-60697402 None:intergenic 35.0%
! GTTTCAAAACAAAAGAGCAC+AGG - chr2.1:60697437-60697456 MS.gene03043:intron 35.0%
!! CCTTTGAATTAGGTTGATGA+AGG - chr2.1:60699191-60699210 MS.gene03043:intron 35.0%
!! GTGTCACTTATAATTCCATC+AGG - chr2.1:60700956-60700975 MS.gene03043:intron 35.0%
!! TCAAAGTGGAGCTTTGTTAT+TGG - chr2.1:60698524-60698543 MS.gene03043:CDS 35.0%
!! TGGTGGATAATTTTCTGTCT+AGG - chr2.1:60698422-60698441 MS.gene03043:intron 35.0%
AAAACAATATGAGACGGGAG+AGG + chr2.1:60699879-60699898 None:intergenic 40.0%
AAATTCACTTCCAAGGTCCA+GGG - chr2.1:60697875-60697894 MS.gene03043:intron 40.0%
AAGCTGAGACTTAACCCATA+AGG + chr2.1:60698084-60698103 None:intergenic 40.0%
AAGTTCCATGAGCCATCTTT+GGG + chr2.1:60699015-60699034 None:intergenic 40.0%
ACAAAACCCAATGATGTTGG+TGG - chr2.1:60698010-60698029 MS.gene03043:CDS 40.0%
ACATTTGGTCGACATGTTTC+TGG - chr2.1:60698229-60698248 MS.gene03043:CDS 40.0%
ACCTCCTTGAATCTAGATAG+AGG - chr2.1:60697960-60697979 MS.gene03043:CDS 40.0%
AGCCATGAAGCACAAATCTT+AGG + chr2.1:60697233-60697252 None:intergenic 40.0%
AGGCCTAAATCAACCTAAGT+TGG - chr2.1:60697044-60697063 MS.gene03043:CDS 40.0%
ATGTGTGCAATTTCATGCCA+TGG + chr2.1:60700055-60700074 None:intergenic 40.0%
ATTACACATCTCCTTCCTTC+AGG + chr2.1:60699672-60699691 None:intergenic 40.0%
CTCTTATAAAAAGGACCGGA+GGG - chr2.1:60696355-60696374 MS.gene03043:intron 40.0%
CTCTTATAAATAGGACCGGA+GGG - chr2.1:60696132-60696151 MS.gene03043:intron 40.0%
CTTCATGAGCTTAACTCAGT+TGG + chr2.1:60696781-60696800 None:intergenic 40.0%
GAAAGCCCGAGATATAAGAA+AGG + chr2.1:60700419-60700438 None:intergenic 40.0%
GAAATTGCACACATCTCTAC+TGG - chr2.1:60700061-60700080 MS.gene03043:intron 40.0%
GTCCTAAGATTTGTGCTTCA+TGG - chr2.1:60697228-60697247 MS.gene03043:intron 40.0%
GTCTCTTTCAAGCACTTTGA+TGG + chr2.1:60698493-60698512 None:intergenic 40.0%
GTTACTAAATGGACCGTGAT+GGG + chr2.1:60699387-60699406 None:intergenic 40.0%
TATGATGCACCTCATTTGTG+TGG - chr2.1:60700242-60700261 MS.gene03043:intron 40.0%
TCAGAGATGAAAAAGCCTGA+TGG + chr2.1:60700974-60700993 None:intergenic 40.0%
TCAGTGGTTACATTACCTGA+AGG - chr2.1:60699654-60699673 MS.gene03043:intron 40.0%
TCTCTTATAAAAAGGACCGG+AGG - chr2.1:60696354-60696373 MS.gene03043:intron 40.0%
TCTCTTATAAATAGGACCGG+AGG - chr2.1:60696131-60696150 MS.gene03043:intron 40.0%
TGAACACATTCATCCAGTCA+GGG + chr2.1:60695920-60695939 None:intergenic 40.0%
TGAGAAAACCTAGAGCTAGA+CGG + chr2.1:60699266-60699285 None:intergenic 40.0%
TGAGCCTCTATCTAGATTCA+AGG + chr2.1:60697967-60697986 None:intergenic 40.0%
TGATGGGAAATTCACTTCCA+AGG - chr2.1:60697868-60697887 MS.gene03043:intron 40.0%
TGGTTACATTACCTGAAGGA+AGG - chr2.1:60699658-60699677 MS.gene03043:intron 40.0%
TGTTACTAAATGGACCGTGA+TGG + chr2.1:60699388-60699407 None:intergenic 40.0%
TGTTCTCGATCAAACTGTCA+CGG - chr2.1:60695892-60695911 MS.gene03043:intron 40.0%
TTAGTTTCACCTCCCAAAGA+TGG - chr2.1:60700821-60700840 MS.gene03043:intron 40.0%
TTATGCTACGTACAGATGCA+TGG - chr2.1:60698611-60698630 MS.gene03043:CDS 40.0%
TTTCGATTAGTGCAAACCCT+AGG - chr2.1:60700435-60700454 MS.gene03043:intron 40.0%
! AAAGCTCCACTTTGACTTTC+TGG + chr2.1:60698519-60698538 None:intergenic 40.0%
! AAGCTCCACTTTGACTTTCT+GGG + chr2.1:60698518-60698537 None:intergenic 40.0%
! AATGACATGGAAGGAAGTGT+AGG + chr2.1:60700211-60700230 None:intergenic 40.0%
! ACAAGTTGAAGCTGGTATCT+GGG - chr2.1:60698697-60698716 MS.gene03043:CDS 40.0%
! ACTTGCACATCAGGTTGTTA+AGG - chr2.1:60699695-60699714 MS.gene03043:intron 40.0%
! GACCTCATTCTTCTTTTTGG+AGG - chr2.1:60698759-60698778 MS.gene03043:CDS 40.0%
! GATTTTAGATCTACTCCCTC+CGG + chr2.1:60696150-60696169 None:intergenic 40.0%
! TACAAGTTGAAGCTGGTATC+TGG - chr2.1:60698696-60698715 MS.gene03043:CDS 40.0%
! TAGGTATGTCAGCCTTGTAA+CGG - chr2.1:60700520-60700539 MS.gene03043:intron 40.0%
! TATTGCGTACAAGTTGAAGC+TGG - chr2.1:60698689-60698708 MS.gene03043:CDS 40.0%
! TCTTTGGGAGGTGAAACTAA+AGG + chr2.1:60700821-60700840 None:intergenic 40.0%
! TGATACTTCCTCTTTTTCCC+TGG + chr2.1:60697895-60697914 None:intergenic 40.0%
! TGGAAGGAAGTGTAGGAAAA+TGG + chr2.1:60700204-60700223 None:intergenic 40.0%
! TTTTGGCGCCATTAAAGTAG+TGG + chr2.1:60698160-60698179 None:intergenic 40.0%
!! CGTTTTGTGATGGAAATCCA+TGG - chr2.1:60700035-60700054 MS.gene03043:intron 40.0%
!! GACTTAGGTTTTGGCGTAAT+AGG - chr2.1:60700501-60700520 MS.gene03043:intron 40.0%
!! TCAGCATCAGCAAAGTATTG+TGG + chr2.1:60699762-60699781 None:intergenic 40.0%
!! TCTTTTTGGAGGTTTCCTTC+TGG - chr2.1:60698770-60698789 MS.gene03043:CDS 40.0%
AAGCTTAAGCAACTCTTCCG+TGG + chr2.1:60698048-60698067 None:intergenic 45.0%
ATCTTCACACCATCTTTGGG+AGG + chr2.1:60700833-60700852 None:intergenic 45.0%
CTAAATGGTCCAACCCATCA+CGG - chr2.1:60699371-60699390 MS.gene03043:intron 45.0%
CTGAACACATTCATCCAGTC+AGG + chr2.1:60695921-60695940 None:intergenic 45.0%
GAAATTCACTTCCAAGGTCC+AGG - chr2.1:60697874-60697893 MS.gene03043:intron 45.0%
GAAGTTCCATGAGCCATCTT+TGG + chr2.1:60699016-60699035 None:intergenic 45.0%
GCAAATCGAGAGTTACCTGT+TGG + chr2.1:60699537-60699556 None:intergenic 45.0%
GCCTCTATCTAGATTCAAGG+AGG + chr2.1:60697964-60697983 None:intergenic 45.0%
GGTTTCTTGGATTGAGCATG+TGG - chr2.1:60698920-60698939 MS.gene03043:intron 45.0%
GTATGCACACATTCACTCAG+AGG - chr2.1:60695771-60695790 MS.gene03043:CDS 45.0%
GTTACCCCTCTCATAGTTGT+CGG + chr2.1:60699233-60699252 None:intergenic 45.0%
TAACCCATAAGGACTCATCG+CGG + chr2.1:60698073-60698092 None:intergenic 45.0%
TGAACCTCAAAACGTCTTGC+CGG + chr2.1:60699918-60699937 None:intergenic 45.0%
TGAGCTTAACTCAGTTGGCA+AGG + chr2.1:60696776-60696795 None:intergenic 45.0%
TGCAATATATGCAAGGTCCG+AGG + chr2.1:60696749-60696768 None:intergenic 45.0%
TTGAGCCACAACAAGTGAAG+TGG - chr2.1:60697412-60697431 MS.gene03043:intron 45.0%
TTGGATTGAGCATGTGGAAG+TGG - chr2.1:60698926-60698945 MS.gene03043:intron 45.0%
TTTCCGCGATGAGTCCTTAT+GGG - chr2.1:60698067-60698086 MS.gene03043:CDS 45.0%
TTTGCTGATGCTGATGACAG+CGG - chr2.1:60699768-60699787 MS.gene03043:intron 45.0%
! AACCACCACTTCACTTGTTG+TGG + chr2.1:60697420-60697439 None:intergenic 45.0%
! AGCTCCACTTTGACTTTCTG+GGG + chr2.1:60698517-60698536 None:intergenic 45.0%
! CAGTGGGATACGTTTTGTGA+TGG - chr2.1:60700025-60700044 MS.gene03043:intron 45.0%
! TTGCATTTGGAGCCCAAAGA+TGG - chr2.1:60699000-60699019 MS.gene03043:CDS 45.0%
! TTTTCCGCGATGAGTCCTTA+TGG - chr2.1:60698066-60698085 MS.gene03043:CDS 45.0%
!! AGACGGGAGAGGTATCAAAA+CGG + chr2.1:60699868-60699887 None:intergenic 45.0%
!! GGTCGACATGTTTCTGGATT+CGG - chr2.1:60698235-60698254 MS.gene03043:CDS 45.0%
!! TTTATATAATACTAAAAAAA+TGG - chr2.1:60696481-60696500 MS.gene03043:intron 5.0%
AACGCCGACAACTATGAGAG+GGG - chr2.1:60699226-60699245 MS.gene03043:intron 50.0%
ACCTAGAGCTAGACGGAATG+AGG + chr2.1:60699259-60699278 None:intergenic 50.0%
AGAACGCCGACAACTATGAG+AGG - chr2.1:60699224-60699243 MS.gene03043:intron 50.0%
AGCCACAACAAGTGAAGTGG+TGG - chr2.1:60697415-60697434 MS.gene03043:intron 50.0%
AGTCCAGCCACCAACATCAT+TGG + chr2.1:60698020-60698039 None:intergenic 50.0%
CCTAGAGCTAGACGGAATGA+GGG + chr2.1:60699258-60699277 None:intergenic 50.0%
CTCTCCGCGCTGAAAATGAA+AGG - chr2.1:60697605-60697624 MS.gene03043:intron 50.0%
CTTCCTAAAAGCTCGACACG+TGG - chr2.1:60697933-60697952 MS.gene03043:CDS 50.0%
GAACGCCGACAACTATGAGA+GGG - chr2.1:60699225-60699244 MS.gene03043:intron 50.0%
GACTCCCCAGAAAGTCAAAG+TGG - chr2.1:60698510-60698529 MS.gene03043:CDS 50.0%
GTCCAGCCACCAACATCATT+GGG + chr2.1:60698019-60698038 None:intergenic 50.0%
TCCAAGGTCCAGGGAAAAAG+AGG - chr2.1:60697884-60697903 MS.gene03043:intron 50.0%
TTGCTGATGCTGATGACAGC+GGG - chr2.1:60699769-60699788 MS.gene03043:intron 50.0%
! AGATCCGGCAAGACGTTTTG+AGG - chr2.1:60699911-60699930 MS.gene03043:intron 50.0%
! CTTCCACGTGTCGAGCTTTT+AGG + chr2.1:60697939-60697958 None:intergenic 50.0%
! TCCTCTTTTTCCCTGGACCT+TGG + chr2.1:60697888-60697907 None:intergenic 50.0%
!! AACCCAATGATGTTGGTGGC+TGG - chr2.1:60698014-60698033 MS.gene03043:CDS 50.0%
!! CTAAATGGACCGTGATGGGT+TGG + chr2.1:60699383-60699402 None:intergenic 50.0%
AACTGTCACGGATCCCTGAC+TGG - chr2.1:60695904-60695923 MS.gene03043:intron 55.0%
ATAGCTAAACGGCTGAGGGC+AGG - chr2.1:60699329-60699348 MS.gene03043:CDS 55.0%
ATGCTGATGACAGCGGGGTT+AGG - chr2.1:60699775-60699794 MS.gene03043:intron 55.0%
CACTGTCAGCAACGAAGCTC+TGG + chr2.1:60701029-60701048 None:intergenic 55.0%
CAGAGCTTCGTTGCTGACAG+TGG - chr2.1:60701027-60701046 MS.gene03043:intron 55.0%
TAGCTAAACGGCTGAGGGCA+GGG - chr2.1:60699330-60699349 MS.gene03043:CDS 55.0%
TGCTGATGCTGATGACAGCG+GGG - chr2.1:60699770-60699789 MS.gene03043:intron 55.0%
TGGAGCCCAAAGATGGCTCA+TGG - chr2.1:60699007-60699026 MS.gene03043:CDS 55.0%
TGGCTCAAGCTCAAGCTCCT+GGG + chr2.1:60697400-60697419 None:intergenic 55.0%
TGGTGGTTGGGTTTGAGCCT+CGG - chr2.1:60696729-60696748 MS.gene03043:intron 55.0%
TGTGTGCATACAGTGACCGC+AGG + chr2.1:60695762-60695781 None:intergenic 55.0%
!! CCCTCATTCCGTCTAGCTCT+AGG - chr2.1:60699255-60699274 MS.gene03043:intron 55.0%
GAGGGCAGGGACCTCTCATT+GGG - chr2.1:60699343-60699362 MS.gene03043:CDS 60.0%
GTGGCTCAAGCTCAAGCTCC+TGG + chr2.1:60697401-60697420 None:intergenic 60.0%
TGAGGGCAGGGACCTCTCAT+TGG - chr2.1:60699342-60699361 MS.gene03043:CDS 60.0%
!! GCGCGGAGAGCATCGTTATC+TGG + chr2.1:60697595-60697614 None:intergenic 60.0%
!! GGTGGCTGGACTTGCTGCCA+CGG - chr2.1:60698028-60698047 MS.gene03043:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 60695560 60701165 60695560 ID=MS.gene03043
chr2.1 mRNA 60695560 60701165 60695560 ID=MS.gene03043.t1;Parent=MS.gene03043
chr2.1 exon 60701071 60701165 60701071 ID=MS.gene03043.t1.exon1;Parent=MS.gene03043.t1
chr2.1 CDS 60701071 60701165 60701071 ID=cds.MS.gene03043.t1;Parent=MS.gene03043.t1
chr2.1 exon 60699261 60699378 60699261 ID=MS.gene03043.t1.exon2;Parent=MS.gene03043.t1
chr2.1 CDS 60699261 60699378 60699261 ID=cds.MS.gene03043.t1;Parent=MS.gene03043.t1
chr2.1 exon 60698981 60699148 60698981 ID=MS.gene03043.t1.exon3;Parent=MS.gene03043.t1
chr2.1 CDS 60698981 60699148 60698981 ID=cds.MS.gene03043.t1;Parent=MS.gene03043.t1
chr2.1 exon 60698469 60698864 60698469 ID=MS.gene03043.t1.exon4;Parent=MS.gene03043.t1
chr2.1 CDS 60698469 60698864 60698469 ID=cds.MS.gene03043.t1;Parent=MS.gene03043.t1
chr2.1 exon 60698180 60698281 60698180 ID=MS.gene03043.t1.exon5;Parent=MS.gene03043.t1
chr2.1 CDS 60698180 60698281 60698180 ID=cds.MS.gene03043.t1;Parent=MS.gene03043.t1
chr2.1 exon 60697896 60698099 60697896 ID=MS.gene03043.t1.exon6;Parent=MS.gene03043.t1
chr2.1 CDS 60697896 60698099 60697896 ID=cds.MS.gene03043.t1;Parent=MS.gene03043.t1
chr2.1 exon 60697627 60697804 60697627 ID=MS.gene03043.t1.exon7;Parent=MS.gene03043.t1
chr2.1 CDS 60697627 60697804 60697627 ID=cds.MS.gene03043.t1;Parent=MS.gene03043.t1
chr2.1 exon 60696793 60697067 60696793 ID=MS.gene03043.t1.exon8;Parent=MS.gene03043.t1
chr2.1 CDS 60696793 60697067 60696793 ID=cds.MS.gene03043.t1;Parent=MS.gene03043.t1
chr2.1 exon 60696608 60696697 60696608 ID=MS.gene03043.t1.exon9;Parent=MS.gene03043.t1
chr2.1 CDS 60696608 60696697 60696608 ID=cds.MS.gene03043.t1;Parent=MS.gene03043.t1
chr2.1 exon 60695560 60695907 60695560 ID=MS.gene03043.t1.exon10;Parent=MS.gene03043.t1
chr2.1 CDS 60695560 60695907 60695560 ID=cds.MS.gene03043.t1;Parent=MS.gene03043.t1
Gene Sequence

>MS.gene03043

ATGGACCTATCAGGTGATGAACAAGATAGTGACAACTCAAATGAATCAAAAAGAGTCTGTCGACATTCTGCTGATCAAATACTTAAGCTAGAAGAGTAAGATGATCAATCTCTGCTTATGTAAATTTTATTTATTTTCATTTGATAGGTTTTTTAGGATTCAATTTCGCTTATTGGTGAAGGATATCGAATATAGGTATCCTGCGGTCACTGTATGCACACATTCACTCAGAGGATCCGTGATTGTTTGATTGAGATCGGATGATTAAAATCTCAAGGTCGATAAGTTTAATTTTAAAAGAATATCAGGATCTATCTACTTTTTGAAAATACTGTTCTCGATCAAACTGTCACGGATCCCTGACTGGATGAATGTGTTCAGCCACTAAGATCAAATAGTATGGATCTTATGACTACATGAATGCGTTCAATCAATGACAATATATGAAATCTGAGTTCAATTATATTATATTTTCTCCGGTCTTATTTATAAGAGACTTTTGAGTCAACAAAAATTGATGTATTTAGTTCAAAATCTAGACCAAATACATCAATATTTGTTGATCAAAATGTCTCTTATAAATAGGACCGGAGGGAGTAGATCTAAAATCTTTGATCTCATTACACAACAAGCCATATACCAAGATTGACATTTAATTATATGGAATCTGAGTTCAATATTATATTATATTTCATCCGGTCTTATTTATAAGAGACTTTTGAGTCAACAAAAATTGATGTACATATATAGTTCAAAATTTAGACCAAATACATCAATATTTGTTGATCAAAATGTCTCTTATAAAAAGGACCGGAGGGAGTAGATCTAAAATCTTTGATCTCATTACACAACAGGCCATATACCAAGATTGACATTTAATTATCTAGATAATTCATTTCACACTCTAATTGACTACTGCAATTTATATAATACTAAAAAAATGGTTATATCCCACAAAATCAATTTTAAAATTTAAAGAGAAAAAAATTATAGGTCAATAATATATAACAATTTTGTTATCTTTTTTTCTACTAATTTTTTTTATCATTTTTATTTTGTTGAAACACAGATTCTTATTTGAGACAGTTTCATCAATTGTTTTAATCAAATAATATCTGTATATATACAAGATTTTAAACTATATACATAGTCAATTGTTTTTTTTTTTGTGGTGGTTGGGTTTGAGCCTCGGACCTTGCATATATTGCATTGTCCTTGCCAACTGAGTTAAGCTCATGAAGACAATCCAATTGATCATGTTTGCAACACTTTGTTGCCTTTCGAAAGAAAAAATCTTGTTTTTTTGACGAAAGAAAGAAAATTCTTACTCACAATCCATTCCATTGTTGCATAGAATTTTTTTATTTTTTATTTATATTGAGTTAAAGAAAAGTTTTTTCATGTTTCAAAAGGCTGTTTATATTCTTATCAAATCCATGACTTCAATACAATATCATTTTATTGGTAAAACTCACAGATTACACAGGCCTAAATCAACCTAAGTTGGATTTGAAGAATTGTAGTGCTACTTGTACTTTATTCTATATCTAATAAAGATTTTCCATTAAAAAAAAAAAACCATATATTAAGTTTCTATAATGATGCTTCATGGCTTGTGTATGTGTCATAATGATGAATATTTAATTAATTAGGAAAGATGAATCTAGTGTCCTAAGATTTGTGCTTCATGGCTTGTGTATGTGTCATTTCTGCTTTTAAACTTATCATTCAATTGGCTTTGCAATGCAATCTAACGCTTAATTTTGTTTTTTGTTTCTTAAATGAAGAATATTCAAAACGCTTACACATCCAGATGATAACCAAAAATATCAAATAGCCCAGGAGCTTGAGCTTGAGCCACAACAAGTGAAGTGGTGGTTTCAAAACAAAAGAGCACAGGTTAAGGTAACATATTTTTTTTTTAGTTTTATCAAAATCTTAGTTTCAATTTTTTTCACATGCCACTAATTGATATAACATACTAATATATATATTTTGTATATGATGTCATTTCAAGAACAAAAATTTAAAACCAGATAACGATGCTCTCCGCGCTGAAAATGAAAGGATTTTGAAAGAGAACATGGAAATGAAGGAGAGACTGAAGAATTTATTGTGCCAATCATGTAATGATCCTAATAGTTTGAAACAACTTCAGGTTGAAAATGAACGTCTCAAAGAAAGGGTGAGTTAGTATAGCTAGATACAATGTTTCAATATCTCAATTTTCTATGTAAATAATTTACTTTGATACTATTGACTAATTTATTATATTATTCGTATGCATGAATTTCTTTTTAGTATGAGATGATGGGAAATTCACTTCCAAGGTCCAGGGAAAAAGAGGAAGTATCATTAGCACTAAAGTTAGCTCTTCCTAAAAGCTCGACACGTGGAAGCACCTCCTTGAATCTAGATAGAGGCTCAAGTTCAAAGAGTTCTTTAGAAATACAAAACCCAATGATGTTGGTGGCTGGACTTGCTGCCACGGAAGAGTTGCTTAAGCTTTTCCGCGATGAGTCCTTATGGGTTAAGTCTCAGCTTAATCGAAGACTTGTTCTTCAAAAAAACTATGAAGACATCTTCCCTAGAGTTGACCACTACTTTAATGGCGCCAAAACACATGTTGAATCATCAAAAGATTCACAAATGGTGAAAATTGGAGCAAGACATTTGGTCGACATGTTTCTGGATTCGGTAAGCATTTATAACATAAATATTTCTCCACAATGATTTTTATTGAGATCATATTTATCAACTATTAAGATCATTATTGATACAATAACTATTGACAATATGTCAATTAAAAGCACATTAACTATTTTTAATTTATCTTAAATATTTATTAGTACTTGAAATTAATGGTGGATAATTTTCTGTCTAGGAAAAATGGGCAAATCTTTTTCCAACTATTGTTAGCAAAGCTGAGACCATCAAAGTGCTTGAAAGAGACTCCCCAGAAAGTCAAAGTGGAGCTTTGTTATTGGTATATTTTCCTTCAAATATTTTTCTTCGTTTATGATATTTTGAATTTTGATAACATGTTAGGGTTTATGCTACGTACAGATGCATGGAGAGATGCATGTTCTTTCACCTTTAGTGAAACCACGAGAATTTTACTTTCTTCGCTATTGCGTACAAGTTGAAGCTGGTATCTGGGTGATTGCTGATGTCTCTTATGATTACTTGAAAGAGGATGGACCTCATTCTTCTTTTTGGAGGTTTCCTTCTGGATGTTTGATTCAAAAAATATCTAATGAGACTTCCAAGGTTAGTACGTATATAATATAGTTAATCAATCTTTGTGAAATAAACTTATATAATAGAGTGATTATAATAGAAACATATGTTTAATTTTTAGGTTTCTTGGATTGAGCATGTGGAAGTGGATTTGAAGATTCAAACACATAGTATGTATAGAGATATTGTCAACAATGCTATTGCATTTGGAGCCCAAAGATGGCTCATGGAACTTCAAAGAATTGGTGAAAGATGTAGTAGTGCTGCACTTGAATACAAGCATTTTTATGACAATGGAGGTAATGATGAAAGTTTTAGTGTTTAGCCATAGATCAATAGATACAAATTATAGCATATCATCAATAACAAAGAAAGAACAAGAAATTGTGTACCTTTGAATTAGGTTGATGAAGGACAACTGTAAAGAACGCCGACAACTATGAGAGGGGTAACTACCCTCATTCCGTCTAGCTCTAGGTTTTCTCACCAATCTTCAGAATAATTAACCGTCTAATGGGATGACGTTTAAATAGCTAAACGGCTGAGGGCAGGGACCTCTCATTGGGCTTATCTAAATGGTCCAACCCATCACGGTCCATTTAGTAACAAAAGCCCAATCACTCAAATTCATCATATAATTAGTGCTTAACACAATAGACCATAATTTATATTATGACATCAACTTATAATAATTGATTATTGTCAATCCATAATTTATTAATTAAATAATTAATCCAACAGGTAACTCTCGATTTGCCATTATTTAACCTATTTAACTAAGAAAACTCCTTATAATTTTCTTTAGTATTCTCTTCTTAGTTGAAATATGTGTGATTTATTCATTTATATACTTTTCAGTGGTTACATTACCTGAAGGAAGGAGATGTGTAATGAAACTTGCACATCAGGTTGTTAAGGAGTTCAGTAAAAATTTAACAATGTCAAGCAAATCAGATTTACCACAATACTTTGCTGATGCTGATGACAGCGGGGTTAGGTTTTCGATTCGAAAAAATAGAAACTTATTTCTGTCAAATGATCCATTCATTGTTATTGTTGCTAGCTCCGTTTTGATACCTCTCCCGTCTCATATTGTTTTCGACTTCTTAAGAGATCCGGCAAGACGTTTTGAGGTTCAAAGAATTTTTGTTTATTTGAATTTTTTGTAAGTTTTAACTTTTCATTGTTTATCATTAATACATGTCATTTGTTAATTATTTTCATGCAGTGGGATACGTTTTGTGATGGAAATCCATGGCATGAAATTGCACACATCTCTACTGGAACTCATCCCAACCACTATGTATCAATTATTCAGGTATTTACCATATTTTATTTATAAGAGAATATTTTGATTTTTTTTTTTAATGTTATAAACTATATCTTAATTTATATCTATAGCCATTTTCCTACACTTCCTTCCATGTCATTTCAAATGAACATATGATGCACCTCATTTGTGTGGAGAACATATGTGTGATCAAAATGAATCTAGGATTGTTTCAATTATTTTGGTGCCAACTTTTCAAAATTTAGGCTTATTAGGGCAAATGTAGCTCCCCTTTTATTCTTGTACTTTTGTAGATAACTTGTTGATTTACAACTCAGGGTTGATGCCTTTCTTATATCTCGGGCTTTCGATTAGTGCAAACCCTAGGAATTGTTTCACTTTGAAACCTGTGTTAAACGTTCTACACAATAGACTTAGGTTTTGGCGTAATAGGTATGTCAGCCTTGTAACGGAAGAAAATTTTAGTCCGATTCATTTATTGAATTGACACAAATTTTTTAAAAGAAAAATTGTCTACACCATCTGAAAATGTCACAACATACAATTACACAAGTTAGGGATTTCTTGGTCACATATTTATATATATAAAGTTTCATAAAATACAATAGGTTTACATAAGATGACTAATAATACTTTATCATCTTTTGATGTGTAAATTGTTTTGTGGACTAATTTTAACCAAAATTAAAATTTGGTATTAACATTTTTTTTCTTCAATGTGGAGCAGCCTTTAGTTTCACCTCCCAAAGATGGTGTGAAGATTATTCAAGAATGTTTCATAGACCCTTTGGGATCCTATGTTGTTTATTCTCCTGTAAACACACAAGAGTTGAATATGGCAATGAATGGCCATGATTTATCAAATGTGTCACTTATAATTCCATCAGGCTTTTTCATCTCTGAAGATAGTAAATCTCTTTCAAAAGATAGTAAATCCAGAGCTTCGTTGCTGACAGTGGCTTTTGAAATGCACATGCCTAGTCCTCTTGTTGCAAATTTTGAATCTGTAGCTGAAGCTTCAAATGCACTCATGACAACAGTAGTTAAAAGCATAAAACATGCTCTACTTAATTAG
Protein sequence

>MS.gene03043.t1

MDLSGDEQDSDNSNESKRVCRHSADQILKLEEIFKTLTHPDDNQKYQIAQELELEPQQVKWWFQNKRAQVKNKNLKPDNDALRAENERILKENMEMKERLKNLLCQSCNDPNSLKQLQVENERLKERYEMMGNSLPRSREKEEVSLALKLALPKSSTRGSTSLNLDRGSSSKSSLEIQNPMMLVAGLAATEELLKLFRDESLWVKSQLNRRLVLQKNYEDIFPRVDHYFNGAKTHVESSKDSQMVKIGARHLVDMFLDSEKWANLFPTIVSKAETIKVLERDSPESQSGALLLMHGEMHVLSPLVKPREFYFLRYCVQVEAGIWVIADVSYDYLKEDGPHSSFWRFPSGCLIQKISNETSKVSWIEHVEVDLKIQTHSMYRDIVNNAIAFGAQRWLMELQRIGERCSSAALEYKHFYDNGVVTLPEGRRCVMKLAHQVVKEFSKNLTMSSKSDLPQYFADADDSGVRFSIRKNRNLFLSNDPFIVIVASSVLIPLPSHIVFDFLRDPARRFEWDTFCDGNPWHEIAHISTGTHPNHYVSIIQPLVSPPKDGVKIIQECFIDPLGSYVVYSPVNTQELNMAMNGHDLSNVSLIIPSGFFISEDSKSLSKDSKSRASLLTVAFEMHMPSPLVANFESVAEASNALMTTVVKSIKHALLN