Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030430.t1 | KEH21040.1 | 98.6 | 211 | 3 | 0 | 1 | 211 | 1 | 211 | 5.00E-115 | 423.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030430.t1 | O04193 | 61.0 | 182 | 64 | 2 | 1 | 175 | 1 | 182 | 7.2e-62 | 238.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030430.t1 | A0A072U5A9 | 98.6 | 211 | 3 | 0 | 1 | 211 | 1 | 211 | 3.6e-115 | 423.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene030430.t1 | TF | LIM |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030430.t1 | MTR_8g097300 | 98.578 | 211 | 3 | 0 | 1 | 211 | 1 | 211 | 1.00e-155 | 429 |
| MS.gene030430.t1 | MTR_3g070050 | 60.109 | 183 | 65 | 1 | 1 | 175 | 1 | 183 | 7.90e-76 | 226 |
| MS.gene030430.t1 | MTR_8g031490 | 59.538 | 173 | 68 | 1 | 1 | 171 | 1 | 173 | 7.52e-74 | 222 |
| MS.gene030430.t1 | MTR_7g076720 | 53.302 | 212 | 95 | 2 | 1 | 208 | 1 | 212 | 3.43e-73 | 221 |
| MS.gene030430.t1 | MTR_1g017950 | 55.367 | 177 | 67 | 4 | 1 | 167 | 1 | 175 | 1.07e-61 | 191 |
| MS.gene030430.t1 | MTR_4g106800 | 52.000 | 175 | 77 | 2 | 2 | 169 | 3 | 177 | 3.10e-61 | 189 |
| MS.gene030430.t1 | MTR_4g106800 | 50.704 | 71 | 35 | 0 | 93 | 163 | 2 | 72 | 4.14e-18 | 78.6 |
| MS.gene030430.t1 | MTR_3g070050 | 56.028 | 141 | 54 | 1 | 43 | 175 | 1 | 141 | 5.34e-51 | 162 |
| MS.gene030430.t1 | MTR_3g070050 | 42.424 | 66 | 38 | 0 | 3 | 68 | 61 | 126 | 2.79e-15 | 70.5 |
| MS.gene030430.t1 | MTR_3g070033 | 67.213 | 61 | 20 | 0 | 115 | 175 | 6 | 66 | 4.99e-25 | 93.6 |
| MS.gene030430.t1 | MTR_1g106100 | 51.471 | 68 | 33 | 0 | 92 | 159 | 57 | 124 | 2.60e-19 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030430.t1 | AT3G61230 | 54.460 | 213 | 88 | 3 | 2 | 210 | 3 | 210 | 2.64e-79 | 236 |
| MS.gene030430.t1 | AT3G61230 | 53.425 | 73 | 34 | 0 | 93 | 165 | 2 | 74 | 1.26e-21 | 89.0 |
| MS.gene030430.t1 | AT2G45800 | 55.288 | 208 | 89 | 2 | 1 | 204 | 1 | 208 | 7.30e-78 | 233 |
| MS.gene030430.t1 | AT2G39900 | 60.989 | 182 | 64 | 2 | 1 | 175 | 1 | 182 | 7.24e-77 | 229 |
| MS.gene030430.t1 | AT3G55770 | 57.789 | 199 | 78 | 2 | 1 | 193 | 1 | 199 | 1.51e-75 | 226 |
| MS.gene030430.t1 | AT3G55770 | 57.789 | 199 | 78 | 2 | 1 | 193 | 1 | 199 | 1.51e-75 | 226 |
| MS.gene030430.t1 | AT3G55770 | 57.789 | 199 | 78 | 2 | 1 | 193 | 1 | 199 | 1.51e-75 | 226 |
| MS.gene030430.t1 | AT3G55770 | 57.789 | 199 | 78 | 2 | 1 | 193 | 1 | 199 | 1.51e-75 | 226 |
| MS.gene030430.t1 | AT1G01780 | 53.659 | 205 | 88 | 2 | 1 | 203 | 1 | 200 | 2.61e-74 | 223 |
| MS.gene030430.t1 | AT3G55770 | 49.356 | 233 | 78 | 3 | 1 | 193 | 1 | 233 | 7.23e-68 | 208 |
| MS.gene030430.t1 | AT1G10200 | 54.802 | 177 | 68 | 4 | 1 | 167 | 1 | 175 | 7.88e-62 | 191 |
| MS.gene030430.t1 | AT2G45800 | 53.012 | 166 | 74 | 2 | 43 | 204 | 12 | 177 | 1.75e-53 | 170 |
| MS.gene030430.t1 | AT2G45800 | 48.438 | 64 | 33 | 0 | 3 | 66 | 68 | 131 | 5.06e-15 | 70.9 |
| MS.gene030430.t1 | AT3G55770 | 54.688 | 128 | 52 | 2 | 1 | 122 | 1 | 128 | 5.53e-42 | 139 |
| MS.gene030430.t1 | AT3G55770 | 46.392 | 97 | 41 | 1 | 95 | 191 | 3 | 88 | 3.15e-23 | 90.9 |
| MS.gene030430.t1 | AT3G55770 | 54.918 | 122 | 49 | 2 | 1 | 116 | 1 | 122 | 4.38e-39 | 131 |
| MS.gene030430.t1 | AT3G55770 | 46.392 | 97 | 41 | 1 | 95 | 191 | 3 | 88 | 1.91e-23 | 91.7 |
| MS.gene030430.t1 | AT1G10200 | 51.515 | 132 | 52 | 4 | 46 | 167 | 4 | 133 | 6.22e-38 | 129 |
| MS.gene030430.t1 | AT1G10200 | 45.455 | 66 | 36 | 0 | 3 | 68 | 61 | 126 | 6.00e-15 | 69.7 |
Find 48 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCTATGCTGCTCTTGA+TGG | 0.220465 | 4.4:+6550874 | MS.gene030430:CDS |
| ATTACCCGTCTGGGGTTTCT+TGG | 0.260267 | 4.4:-6550130 | None:intergenic |
| AAACTTTCTGCTTTCTTCTC+AGG | 0.328680 | 4.4:+6550413 | MS.gene030430:CDS |
| TTTACCACAAGTCATGCTTT+AGG | 0.384129 | 4.4:+6550821 | MS.gene030430:CDS |
| CACAAGCCTTGCATTTCTGT+TGG | 0.387121 | 4.4:-6549448 | None:intergenic |
| AAAGGATCTTATTACCCGTC+TGG | 0.392398 | 4.4:-6550140 | None:intergenic |
| ACAAGCCTTGCATTTCTGTT+GGG | 0.412168 | 4.4:-6549447 | None:intergenic |
| TCTGTCTCTGTGTCTGATGC+TGG | 0.438805 | 4.4:-6551030 | None:intergenic |
| TCTCAGTTGTTTAAGGCAAA+AGG | 0.442224 | 4.4:+6550922 | MS.gene030430:CDS |
| AAGGATCTTATTACCCGTCT+GGG | 0.445643 | 4.4:-6550139 | None:intergenic |
| ACCCGTCTGGGGTTTCTTGG+TGG | 0.448649 | 4.4:-6550127 | None:intergenic |
| AGAAAGCAGAAAGTTTGCTT+GGG | 0.452697 | 4.4:-6550406 | None:intergenic |
| GAAAGTTTGCTTGGGGCCCT+AGG | 0.452962 | 4.4:-6550398 | None:intergenic |
| TTGATAACCATGTCTTTCAC+TGG | 0.453424 | 4.4:+6549422 | None:intergenic |
| AGCAGGAAAGCCTAGTGAAC+TGG | 0.468952 | 4.4:+6550265 | MS.gene030430:intron |
| AACTTTCTGCTTTCTTCTCA+GGG | 0.473345 | 4.4:+6550414 | MS.gene030430:CDS |
| CTGGGGTTTCTTGGTGGCGA+AGG | 0.475484 | 4.4:-6550121 | None:intergenic |
| CAAGAAAACTGTATATCCAT+TGG | 0.479463 | 4.4:+6550460 | MS.gene030430:CDS |
| AAGAAAGCAGAAAGTTTGCT+TGG | 0.480734 | 4.4:-6550407 | None:intergenic |
| AACTGTATATCCATTGGAAA+AGG | 0.494668 | 4.4:+6550466 | MS.gene030430:CDS |
| TCAAGAGCAGCATAGGATGA+AGG | 0.519729 | 4.4:-6550871 | None:intergenic |
| TACACCTCTTGTGTAACAGC+AGG | 0.527623 | 4.4:-6551072 | None:intergenic |
| GAATCCATCAAGAGCAGCAT+AGG | 0.537698 | 4.4:-6550878 | None:intergenic |
| CTTAAACAACTGAGAAAAGT+GGG | 0.541067 | 4.4:-6550914 | None:intergenic |
| AGAATACACACCAGTTCACT+AGG | 0.547764 | 4.4:-6550275 | None:intergenic |
| CCTTAAACAACTGAGAAAAG+TGG | 0.548044 | 4.4:-6550915 | None:intergenic |
| GTTGATACATTATCTGCTGA+TGG | 0.560388 | 4.4:+6549488 | MS.gene030430:CDS |
| CAAGAGCAGCATAGGATGAA+GGG | 0.580724 | 4.4:-6550870 | None:intergenic |
| TTGTGATAAAACTGTTCACT+TGG | 0.580761 | 4.4:+6549466 | MS.gene030430:CDS |
| AGACCCTGCTGTTACACAAG+AGG | 0.603788 | 4.4:+6551068 | MS.gene030430:CDS |
| AGACACAGAGACAGAGACAA+AGG | 0.606794 | 4.4:+6551038 | MS.gene030430:CDS |
| AGTAACTATCAATCAATCGA+AGG | 0.610154 | 4.4:+6550054 | MS.gene030430:CDS |
| TTCAGATGTAATCAATGCAA+CGG | 0.613646 | 4.4:+6549533 | MS.gene030430:CDS |
| GCCACCAAGAAACCCCAGAC+GGG | 0.616220 | 4.4:+6550126 | MS.gene030430:CDS |
| CGCCACCAAGAAACCCCAGA+CGG | 0.618954 | 4.4:+6550125 | MS.gene030430:CDS |
| TTATGATAGTTGACAGTGGA+AGG | 0.619707 | 4.4:+6550793 | MS.gene030430:intron |
| TCAATGCAACGGCCTTCTCG+CGG | 0.630851 | 4.4:+6549544 | MS.gene030430:CDS |
| AGGATCTTATTACCCGTCTG+GGG | 0.640198 | 4.4:-6550138 | None:intergenic |
| TCATGCTTTAGGTGTACACA+TGG | 0.640585 | 4.4:+6550832 | MS.gene030430:CDS |
| ACACCTCTTGTGTAACAGCA+GGG | 0.640717 | 4.4:-6551071 | None:intergenic |
| TGTATGTATATACCGCGAGA+AGG | 0.642991 | 4.4:-6549556 | None:intergenic |
| GAAAGCAGAAAGTTTGCTTG+GGG | 0.651424 | 4.4:-6550405 | None:intergenic |
| TGGAACCCAACAGAAATGCA+AGG | 0.666590 | 4.4:+6549442 | MS.gene030430:CDS |
| CTGTTTATGATAGTTGACAG+TGG | 0.689682 | 4.4:+6550789 | MS.gene030430:intron |
| TTGGGTTCCAGTGAAAGACA+TGG | 0.695332 | 4.4:-6549429 | None:intergenic |
| TTAAACAACTGAGAAAAGTG+GGG | 0.699444 | 4.4:-6550913 | None:intergenic |
| TGCTTTAGGTGTACACATGG+AGG | 0.707932 | 4.4:+6550835 | MS.gene030430:CDS |
| TACACCTAAAGCATGACTTG+TGG | 0.765155 | 4.4:-6550825 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATTAATAATAACATAAA+TGG | + | chr4.4:6550011-6550030 | MS.gene030430:intron | 10.0% |
| !! | CTATTTCAAATTATAATAAT+AGG | + | chr4.4:6550177-6550196 | MS.gene030430:intron | 10.0% |
| !!! | ATAGAAAGTATATAAAAAAA+AGG | - | chr4.4:6550161-6550180 | None:intergenic | 10.0% |
| !!! | TTATCTATGTTTAATTTTTT+TGG | + | chr4.4:6549781-6549800 | MS.gene030430:intron | 10.0% |
| !! | ATATATATGATCAGAAAAAA+GGG | - | chr4.4:6550581-6550600 | None:intergenic | 15.0% |
| !! | TATATATATGATCAGAAAAA+AGG | - | chr4.4:6550582-6550601 | None:intergenic | 15.0% |
| !! | TTTCAAATTATAATAATAGG+AGG | + | chr4.4:6550180-6550199 | MS.gene030430:intron | 15.0% |
| !!! | ATTTTTACAAGTAAAAGTTT+AGG | - | chr4.4:6549970-6549989 | None:intergenic | 15.0% |
| !!! | CATAGATAACTATTTTTTAA+CGG | - | chr4.4:6549770-6549789 | None:intergenic | 15.0% |
| !! | ACAAATCATTATCTTTATCT+TGG | + | chr4.4:6549833-6549852 | MS.gene030430:intron | 20.0% |
| !! | ACATTTCTGATATTTAATTG+TGG | + | chr4.4:6550762-6550781 | MS.gene030430:intron | 20.0% |
| !! | TAAAACCAGAAAACAAATTA+AGG | - | chr4.4:6549584-6549603 | None:intergenic | 20.0% |
| !!! | ATTGGAAAAGGTATATATTT+GGG | + | chr4.4:6550478-6550497 | MS.gene030430:intron | 20.0% |
| ! | ATATATATAGCACATAAACG+AGG | - | chr4.4:6549629-6549648 | None:intergenic | 25.0% |
| ! | ATCATATATATACACAATGC+TGG | + | chr4.4:6550590-6550609 | MS.gene030430:intron | 25.0% |
| ! | GTGCTATATATATCAAAGAT+GGG | + | chr4.4:6549636-6549655 | MS.gene030430:intron | 25.0% |
| ! | TAATCTAAACACATTGAAGA+CGG | - | chr4.4:6550664-6550683 | None:intergenic | 25.0% |
| ! | TATATATAGCACATAAACGA+GGG | - | chr4.4:6549628-6549647 | None:intergenic | 25.0% |
| ! | TGTGCTATATATATCAAAGA+TGG | + | chr4.4:6549635-6549654 | MS.gene030430:intron | 25.0% |
| ! | TTGCATAATCTTAAATGACA+CGG | + | chr4.4:6549898-6549917 | MS.gene030430:intron | 25.0% |
| !! | AGACATTGTGACATTTTATA+CGG | - | chr4.4:6550717-6550736 | None:intergenic | 25.0% |
| !! | CAAATATATACCTTTTCCAA+TGG | - | chr4.4:6550479-6550498 | None:intergenic | 25.0% |
| !! | CATTGGAAAAGGTATATATT+TGG | + | chr4.4:6550477-6550496 | MS.gene030430:intron | 25.0% |
| !! | GACAATTTAAGTACTTTTCT+AGG | + | chr4.4:6549927-6549946 | MS.gene030430:intron | 25.0% |
| !! | TCTCAATGATTTTCTTAAGA+AGG | + | chr4.4:6549872-6549891 | MS.gene030430:intron | 25.0% |
| !! | TTTTATACGGTATCAGTATA+AGG | - | chr4.4:6550636-6550655 | None:intergenic | 25.0% |
| !!! | ACATACCTTAATTTGTTTTC+TGG | + | chr4.4:6549576-6549595 | MS.gene030430:intron | 25.0% |
| AACTGTATATCCATTGGAAA+AGG | + | chr4.4:6550466-6550485 | MS.gene030430:CDS | 30.0% | |
| AATCTAAACACATTGAAGAC+GGG | - | chr4.4:6550663-6550682 | None:intergenic | 30.0% | |
| AGTAACTATCAATCAATCGA+AGG | + | chr4.4:6550054-6550073 | MS.gene030430:CDS | 30.0% | |
| CAAGAAAACTGTATATCCAT+TGG | + | chr4.4:6550460-6550479 | MS.gene030430:CDS | 30.0% | |
| CTTAAACAACTGAGAAAAGT+GGG | - | chr4.4:6550917-6550936 | None:intergenic | 30.0% | |
| GCTATATAATCAAACAATGC+TGG | + | chr4.4:6550538-6550557 | MS.gene030430:intron | 30.0% | |
| GTATAAAATGTCACAATGTC+TGG | + | chr4.4:6550716-6550735 | MS.gene030430:intron | 30.0% | |
| TATATACACAATGCTGGATT+TGG | + | chr4.4:6550596-6550615 | MS.gene030430:intron | 30.0% | |
| TGATGAAACACGAAATGATA+GGG | + | chr4.4:6549692-6549711 | MS.gene030430:intron | 30.0% | |
| TGCATAATCTTAAATGACAC+GGG | + | chr4.4:6549899-6549918 | MS.gene030430:intron | 30.0% | |
| TTAAACAACTGAGAAAAGTG+GGG | - | chr4.4:6550916-6550935 | None:intergenic | 30.0% | |
| TTCAGATGTAATCAATGCAA+CGG | + | chr4.4:6549533-6549552 | MS.gene030430:CDS | 30.0% | |
| TTGATGAAACACGAAATGAT+AGG | + | chr4.4:6549691-6549710 | MS.gene030430:intron | 30.0% | |
| TTGTGATAAAACTGTTCACT+TGG | + | chr4.4:6549466-6549485 | MS.gene030430:CDS | 30.0% | |
| TTTCATATGTTTACAGCCTA+GGG | + | chr4.4:6550382-6550401 | MS.gene030430:intron | 30.0% | |
| ! | TTTAGGTGAGTTGAATATGT+TGG | - | chr4.4:6549953-6549972 | None:intergenic | 30.0% |
| ! | TTTCATGATTTTCAAACAGC+AGG | + | chr4.4:6550248-6550267 | MS.gene030430:intron | 30.0% |
| AAACTTTCTGCTTTCTTCTC+AGG | + | chr4.4:6550413-6550432 | MS.gene030430:CDS | 35.0% | |
| AACTTTCTGCTTTCTTCTCA+GGG | + | chr4.4:6550414-6550433 | MS.gene030430:CDS | 35.0% | |
| CCTTAAACAACTGAGAAAAG+TGG | - | chr4.4:6550918-6550937 | None:intergenic | 35.0% | |
| CTGTTTATGATAGTTGACAG+TGG | + | chr4.4:6550789-6550808 | MS.gene030430:intron | 35.0% | |
| CTTTCATATGTTTACAGCCT+AGG | + | chr4.4:6550381-6550400 | MS.gene030430:intron | 35.0% | |
| GGATCATACAGCAAACAAAT+TGG | - | chr4.4:6549607-6549626 | None:intergenic | 35.0% | |
| GTTGATACATTATCTGCTGA+TGG | + | chr4.4:6549488-6549507 | MS.gene030430:CDS | 35.0% | |
| TTATGATAGTTGACAGTGGA+AGG | + | chr4.4:6550793-6550812 | MS.gene030430:intron | 35.0% | |
| TTTACCACAAGTCATGCTTT+AGG | + | chr4.4:6550821-6550840 | MS.gene030430:CDS | 35.0% | |
| ! | AAGAAAGCAGAAAGTTTGCT+TGG | - | chr4.4:6550410-6550429 | None:intergenic | 35.0% |
| ! | AGAAAGCAGAAAGTTTGCTT+GGG | - | chr4.4:6550409-6550428 | None:intergenic | 35.0% |
| ! | TCTCAGTTGTTTAAGGCAAA+AGG | + | chr4.4:6550922-6550941 | MS.gene030430:CDS | 35.0% |
| !! | CCACTTTTCTCAGTTGTTTA+AGG | + | chr4.4:6550915-6550934 | MS.gene030430:CDS | 35.0% |
| AAAGGATCTTATTACCCGTC+TGG | - | chr4.4:6550143-6550162 | None:intergenic | 40.0% | |
| AAGGATCTTATTACCCGTCT+GGG | - | chr4.4:6550142-6550161 | None:intergenic | 40.0% | |
| ACAAGCCTTGCATTTCTGTT+GGG | - | chr4.4:6549450-6549469 | None:intergenic | 40.0% | |
| AGAATACACACCAGTTCACT+AGG | - | chr4.4:6550278-6550297 | None:intergenic | 40.0% | |
| TACACCTAAAGCATGACTTG+TGG | - | chr4.4:6550828-6550847 | None:intergenic | 40.0% | |
| TGTATGTATATACCGCGAGA+AGG | - | chr4.4:6549559-6549578 | None:intergenic | 40.0% | |
| ! | GAAAGCAGAAAGTTTGCTTG+GGG | - | chr4.4:6550408-6550427 | None:intergenic | 40.0% |
| ! | GAAGACGGGTGTCTTTTATA+CGG | - | chr4.4:6550649-6550668 | None:intergenic | 40.0% |
| ! | TCATGCTTTAGGTGTACACA+TGG | + | chr4.4:6550832-6550851 | MS.gene030430:CDS | 40.0% |
| !!! | AGGAGGTTATGTGCTGTTTT+TGG | + | chr4.4:6550197-6550216 | MS.gene030430:intron | 40.0% |
| !!! | GAGGTTATGTGCTGTTTTTG+GGG | + | chr4.4:6550199-6550218 | MS.gene030430:intron | 40.0% |
| !!! | GGAGGTTATGTGCTGTTTTT+GGG | + | chr4.4:6550198-6550217 | MS.gene030430:intron | 40.0% |
| AAAAGGGCCCACTGAAATCA+TGG | - | chr4.4:6550565-6550584 | None:intergenic | 45.0% | |
| ACACCTCTTGTGTAACAGCA+GGG | - | chr4.4:6551074-6551093 | None:intergenic | 45.0% | |
| AGACACAGAGACAGAGACAA+AGG | + | chr4.4:6551038-6551057 | MS.gene030430:CDS | 45.0% | |
| AGGATCTTATTACCCGTCTG+GGG | - | chr4.4:6550141-6550160 | None:intergenic | 45.0% | |
| ATGCTGGACCATGATTTCAG+TGG | + | chr4.4:6550554-6550573 | MS.gene030430:intron | 45.0% | |
| CAAGAGCAGCATAGGATGAA+GGG | - | chr4.4:6550873-6550892 | None:intergenic | 45.0% | |
| CACAAGCCTTGCATTTCTGT+TGG | - | chr4.4:6549451-6549470 | None:intergenic | 45.0% | |
| GAATCCATCAAGAGCAGCAT+AGG | - | chr4.4:6550881-6550900 | None:intergenic | 45.0% | |
| TACACCTCTTGTGTAACAGC+AGG | - | chr4.4:6551075-6551094 | None:intergenic | 45.0% | |
| TCAAGAGCAGCATAGGATGA+AGG | - | chr4.4:6550874-6550893 | None:intergenic | 45.0% | |
| TCATCCTATGCTGCTCTTGA+TGG | + | chr4.4:6550874-6550893 | MS.gene030430:CDS | 45.0% | |
| TGCTGGACCATGATTTCAGT+GGG | + | chr4.4:6550555-6550574 | MS.gene030430:intron | 45.0% | |
| TGGAACCCAACAGAAATGCA+AGG | + | chr4.4:6549442-6549461 | MS.gene030430:CDS | 45.0% | |
| ! | TGCTTTAGGTGTACACATGG+AGG | + | chr4.4:6550835-6550854 | MS.gene030430:CDS | 45.0% |
| AGACCCTGCTGTTACACAAG+AGG | + | chr4.4:6551068-6551087 | MS.gene030430:CDS | 50.0% | |
| AGCAGGAAAGCCTAGTGAAC+TGG | + | chr4.4:6550265-6550284 | MS.gene030430:intron | 50.0% | |
| TCTGTCTCTGTGTCTGATGC+TGG | - | chr4.4:6551033-6551052 | None:intergenic | 50.0% | |
| ! | ATTACCCGTCTGGGGTTTCT+TGG | - | chr4.4:6550133-6550152 | None:intergenic | 50.0% |
| ! | TCACGCTGAGCAGCTTTTCA+AGG | + | chr4.4:6550095-6550114 | MS.gene030430:CDS | 50.0% |
| TCAATGCAACGGCCTTCTCG+CGG | + | chr4.4:6549544-6549563 | MS.gene030430:CDS | 55.0% | |
| ! | GAAAGTTTGCTTGGGGCCCT+AGG | - | chr4.4:6550401-6550420 | None:intergenic | 55.0% |
| CGCCACCAAGAAACCCCAGA+CGG | + | chr4.4:6550125-6550144 | MS.gene030430:CDS | 60.0% | |
| GCCACCAAGAAACCCCAGAC+GGG | + | chr4.4:6550126-6550145 | MS.gene030430:CDS | 60.0% | |
| ! | ACCCGTCTGGGGTTTCTTGG+TGG | - | chr4.4:6550130-6550149 | None:intergenic | 60.0% |
| !! | CTGGGGTTTCTTGGTGGCGA+AGG | - | chr4.4:6550124-6550143 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 6549431 | 6551095 | 6549431 | ID=MS.gene030430 |
| chr4.4 | mRNA | 6549431 | 6551095 | 6549431 | ID=MS.gene030430.t1;Parent=MS.gene030430 |
| chr4.4 | exon | 6549431 | 6549565 | 6549431 | ID=MS.gene030430.t1.exon1;Parent=MS.gene030430.t1 |
| chr4.4 | CDS | 6549431 | 6549565 | 6549431 | ID=cds.MS.gene030430.t1;Parent=MS.gene030430.t1 |
| chr4.4 | exon | 6550051 | 6550147 | 6550051 | ID=MS.gene030430.t1.exon2;Parent=MS.gene030430.t1 |
| chr4.4 | CDS | 6550051 | 6550147 | 6550051 | ID=cds.MS.gene030430.t1;Parent=MS.gene030430.t1 |
| chr4.4 | exon | 6550267 | 6550286 | 6550267 | ID=MS.gene030430.t1.exon3;Parent=MS.gene030430.t1 |
| chr4.4 | CDS | 6550267 | 6550286 | 6550267 | ID=cds.MS.gene030430.t1;Parent=MS.gene030430.t1 |
| chr4.4 | exon | 6550398 | 6550487 | 6550398 | ID=MS.gene030430.t1.exon4;Parent=MS.gene030430.t1 |
| chr4.4 | CDS | 6550398 | 6550487 | 6550398 | ID=cds.MS.gene030430.t1;Parent=MS.gene030430.t1 |
| chr4.4 | exon | 6550802 | 6551095 | 6550802 | ID=MS.gene030430.t1.exon5;Parent=MS.gene030430.t1 |
| chr4.4 | CDS | 6550802 | 6551095 | 6550802 | ID=cds.MS.gene030430.t1;Parent=MS.gene030430.t1 |
| Gene Sequence |
| Protein sequence |
