Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03046.t1 | XP_012569675.2 | 52.8 | 739 | 254 | 10 | 1 | 708 | 1 | 675 | 3.00E-196 | 695.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03046.t1 | Q9FX31 | 33.0 | 730 | 358 | 12 | 32 | 701 | 43 | 701 | 7.4e-95 | 349.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03046.t1 | A0A1S3E1Q6 | 52.8 | 739 | 254 | 10 | 1 | 708 | 1 | 675 | 2.2e-196 | 695.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene03046.t1 | TF | HB-HD-ZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03046.t1 | MTR_2g030660 | 47.257 | 711 | 300 | 12 | 8 | 707 | 3 | 649 | 0.0 | 602 |
MS.gene03046.t1 | MTR_2g030600 | 36.712 | 730 | 399 | 19 | 1 | 707 | 1 | 690 | 1.23e-138 | 423 |
MS.gene03046.t1 | MTR_2g030570 | 36.649 | 734 | 401 | 18 | 1 | 707 | 1 | 697 | 1.13e-137 | 421 |
MS.gene03046.t1 | MTR_6g477820 | 34.609 | 653 | 342 | 17 | 132 | 705 | 77 | 723 | 1.85e-114 | 361 |
MS.gene03046.t1 | MTR_4g047800 | 32.882 | 739 | 419 | 21 | 1 | 705 | 34 | 729 | 7.11e-113 | 357 |
MS.gene03046.t1 | MTR_7g427710 | 35.188 | 611 | 329 | 18 | 129 | 705 | 61 | 638 | 5.40e-99 | 318 |
MS.gene03046.t1 | MTR_7g427710 | 44.538 | 119 | 55 | 3 | 22 | 140 | 17 | 124 | 7.13e-23 | 104 |
MS.gene03046.t1 | MTR_2g088470 | 32.432 | 629 | 365 | 14 | 129 | 705 | 112 | 732 | 9.31e-95 | 310 |
MS.gene03046.t1 | MTR_2g088470 | 39.231 | 130 | 75 | 2 | 22 | 149 | 68 | 195 | 1.11e-21 | 100 |
MS.gene03046.t1 | MTR_1g101280 | 29.412 | 714 | 454 | 15 | 22 | 705 | 57 | 750 | 2.39e-93 | 306 |
MS.gene03046.t1 | MTR_2g101720 | 30.098 | 711 | 401 | 20 | 26 | 705 | 144 | 789 | 7.03e-93 | 306 |
MS.gene03046.t1 | MTR_7g076080 | 32.551 | 639 | 347 | 20 | 132 | 701 | 139 | 762 | 2.63e-92 | 304 |
MS.gene03046.t1 | MTR_7g076080 | 37.500 | 136 | 81 | 2 | 7 | 140 | 77 | 210 | 1.10e-18 | 91.3 |
MS.gene03046.t1 | MTR_5g005600 | 30.100 | 701 | 425 | 16 | 32 | 706 | 56 | 717 | 2.86e-88 | 292 |
MS.gene03046.t1 | MTR_0198s0030 | 30.851 | 658 | 399 | 16 | 27 | 660 | 61 | 686 | 6.59e-85 | 284 |
MS.gene03046.t1 | MTR_5g029320 | 32.815 | 579 | 321 | 19 | 132 | 653 | 137 | 704 | 1.25e-82 | 279 |
MS.gene03046.t1 | MTR_5g029320 | 44.715 | 123 | 65 | 2 | 20 | 140 | 88 | 209 | 2.29e-22 | 103 |
MS.gene03046.t1 | MTR_2g030690 | 46.953 | 279 | 137 | 5 | 440 | 707 | 1 | 279 | 7.69e-75 | 243 |
MS.gene03046.t1 | MTR_7g427690 | 39.837 | 369 | 199 | 10 | 238 | 596 | 57 | 412 | 1.74e-73 | 245 |
MS.gene03046.t1 | MTR_2g083330 | 30.206 | 437 | 262 | 13 | 296 | 705 | 105 | 525 | 1.98e-43 | 165 |
MS.gene03046.t1 | MTR_2g083350 | 28.660 | 485 | 289 | 15 | 252 | 705 | 73 | 531 | 2.79e-42 | 162 |
MS.gene03046.t1 | MTR_2g451350 | 48.485 | 132 | 67 | 1 | 251 | 381 | 2 | 133 | 7.56e-32 | 120 |
MS.gene03046.t1 | MTR_7g427700 | 34.483 | 232 | 127 | 6 | 132 | 354 | 64 | 279 | 7.02e-29 | 120 |
MS.gene03046.t1 | MTR_7g427700 | 44.538 | 119 | 55 | 3 | 22 | 140 | 17 | 124 | 2.42e-23 | 103 |
MS.gene03046.t1 | MTR_2g030710 | 42.941 | 170 | 72 | 5 | 512 | 675 | 91 | 241 | 8.50e-27 | 110 |
MS.gene03046.t1 | MTR_0653s0020 | 37.222 | 180 | 102 | 5 | 418 | 597 | 3 | 171 | 9.11e-26 | 105 |
MS.gene03046.t1 | MTR_7g027605 | 53.333 | 90 | 39 | 2 | 326 | 413 | 3 | 91 | 8.74e-24 | 96.3 |
MS.gene03046.t1 | MTR_8g432540 | 37.313 | 134 | 84 | 0 | 7 | 140 | 101 | 234 | 2.66e-19 | 93.2 |
MS.gene03046.t1 | MTR_2g030700 | 41.270 | 126 | 65 | 3 | 14 | 139 | 11 | 127 | 4.01e-19 | 85.5 |
MS.gene03046.t1 | MTR_2g030680 | 40.157 | 127 | 67 | 3 | 14 | 140 | 11 | 128 | 1.67e-18 | 83.6 |
MS.gene03046.t1 | MTR_2g451350 | 42.222 | 90 | 52 | 0 | 292 | 381 | 5 | 94 | 1.65e-17 | 78.6 |
MS.gene03046.t1 | MTR_5g046040 | 39.844 | 128 | 73 | 3 | 22 | 146 | 33 | 159 | 3.22e-17 | 84.7 |
MS.gene03046.t1 | MTR_7g027265 | 35.537 | 121 | 78 | 0 | 23 | 143 | 19 | 139 | 1.26e-16 | 77.8 |
MS.gene03046.t1 | MTR_2g030720 | 42.063 | 126 | 61 | 4 | 14 | 139 | 11 | 124 | 1.33e-16 | 78.2 |
MS.gene03046.t1 | MTR_6g027290 | 32.903 | 155 | 98 | 4 | 7 | 158 | 10 | 161 | 6.59e-14 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03046.t1 | AT1G73360 | 34.040 | 708 | 416 | 11 | 22 | 705 | 33 | 713 | 1.39e-126 | 393 |
MS.gene03046.t1 | AT1G17920 | 34.577 | 697 | 398 | 17 | 26 | 705 | 26 | 681 | 2.48e-121 | 378 |
MS.gene03046.t1 | AT1G17920 | 34.577 | 697 | 398 | 17 | 26 | 705 | 26 | 681 | 2.48e-121 | 378 |
MS.gene03046.t1 | AT3G03260 | 32.245 | 735 | 427 | 18 | 1 | 705 | 1 | 694 | 7.39e-115 | 362 |
MS.gene03046.t1 | AT5G17320 | 32.970 | 734 | 427 | 22 | 9 | 705 | 10 | 715 | 1.74e-109 | 348 |
MS.gene03046.t1 | AT3G61150 | 33.054 | 717 | 407 | 19 | 22 | 701 | 111 | 791 | 7.20e-109 | 349 |
MS.gene03046.t1 | AT1G05230 | 32.720 | 706 | 410 | 17 | 7 | 701 | 51 | 702 | 4.63e-108 | 344 |
MS.gene03046.t1 | AT1G05230 | 32.532 | 707 | 412 | 17 | 7 | 701 | 51 | 704 | 8.68e-107 | 341 |
MS.gene03046.t1 | AT1G05230 | 32.532 | 707 | 412 | 17 | 7 | 701 | 51 | 704 | 8.68e-107 | 341 |
MS.gene03046.t1 | AT1G05230 | 32.532 | 707 | 412 | 17 | 7 | 701 | 51 | 704 | 8.68e-107 | 341 |
MS.gene03046.t1 | AT1G05230 | 32.532 | 707 | 412 | 17 | 7 | 701 | 51 | 704 | 8.68e-107 | 341 |
MS.gene03046.t1 | AT1G05230 | 32.532 | 707 | 412 | 17 | 7 | 701 | 51 | 704 | 8.68e-107 | 341 |
MS.gene03046.t1 | AT1G05230 | 32.532 | 707 | 412 | 17 | 7 | 701 | 51 | 704 | 8.68e-107 | 341 |
MS.gene03046.t1 | AT1G05230 | 32.532 | 707 | 412 | 17 | 7 | 701 | 51 | 704 | 8.68e-107 | 341 |
MS.gene03046.t1 | AT1G05230 | 32.532 | 707 | 412 | 17 | 7 | 701 | 51 | 704 | 8.68e-107 | 341 |
MS.gene03046.t1 | AT1G05230 | 32.532 | 707 | 412 | 17 | 7 | 701 | 51 | 704 | 8.68e-107 | 341 |
MS.gene03046.t1 | AT1G05230 | 32.532 | 707 | 412 | 17 | 7 | 701 | 51 | 704 | 8.68e-107 | 341 |
MS.gene03046.t1 | AT4G21750 | 31.448 | 725 | 426 | 15 | 22 | 705 | 63 | 757 | 7.88e-106 | 340 |
MS.gene03046.t1 | AT4G21750 | 31.448 | 725 | 426 | 15 | 22 | 705 | 63 | 757 | 7.88e-106 | 340 |
MS.gene03046.t1 | AT4G21750 | 31.448 | 725 | 426 | 15 | 22 | 705 | 63 | 757 | 7.88e-106 | 340 |
MS.gene03046.t1 | AT4G21750 | 31.448 | 725 | 426 | 15 | 22 | 705 | 63 | 757 | 7.88e-106 | 340 |
MS.gene03046.t1 | AT4G04890 | 31.918 | 683 | 402 | 15 | 22 | 680 | 63 | 706 | 1.31e-102 | 331 |
MS.gene03046.t1 | AT4G04890 | 31.918 | 683 | 402 | 15 | 22 | 680 | 63 | 706 | 1.31e-102 | 331 |
MS.gene03046.t1 | AT1G34650 | 33.628 | 678 | 411 | 18 | 24 | 681 | 17 | 675 | 1.97e-101 | 327 |
MS.gene03046.t1 | AT3G03260 | 33.966 | 580 | 328 | 16 | 1 | 567 | 1 | 538 | 8.28e-93 | 299 |
MS.gene03046.t1 | AT2G32370 | 30.168 | 716 | 430 | 19 | 9 | 703 | 52 | 718 | 3.55e-92 | 303 |
MS.gene03046.t1 | AT1G05230 | 32.667 | 600 | 346 | 14 | 7 | 597 | 51 | 601 | 4.27e-92 | 299 |
MS.gene03046.t1 | AT4G00730 | 32.055 | 652 | 375 | 17 | 107 | 705 | 162 | 798 | 4.69e-88 | 293 |
MS.gene03046.t1 | AT4G00730 | 37.313 | 134 | 84 | 0 | 7 | 140 | 120 | 253 | 9.11e-20 | 94.7 |
MS.gene03046.t1 | AT1G79840 | 29.552 | 714 | 400 | 21 | 22 | 705 | 44 | 684 | 2.38e-82 | 275 |
MS.gene03046.t1 | AT1G79840 | 29.552 | 714 | 400 | 21 | 22 | 705 | 44 | 684 | 2.38e-82 | 275 |
MS.gene03046.t1 | AT1G79840 | 29.552 | 714 | 400 | 21 | 22 | 705 | 102 | 742 | 4.88e-82 | 276 |
MS.gene03046.t1 | AT1G79840 | 29.552 | 714 | 400 | 21 | 22 | 705 | 131 | 771 | 1.21e-81 | 275 |
MS.gene03046.t1 | AT4G17710 | 31.281 | 601 | 357 | 19 | 132 | 707 | 136 | 705 | 7.43e-76 | 258 |
MS.gene03046.t1 | AT4G17710 | 36.975 | 119 | 63 | 3 | 22 | 140 | 89 | 195 | 7.98e-15 | 79.0 |
MS.gene03046.t1 | AT1G79840 | 30.442 | 588 | 326 | 16 | 22 | 595 | 102 | 620 | 1.75e-74 | 253 |
MS.gene03046.t1 | AT5G52170 | 29.316 | 614 | 359 | 18 | 132 | 705 | 105 | 683 | 6.76e-68 | 236 |
MS.gene03046.t1 | AT5G52170 | 41.026 | 117 | 65 | 2 | 26 | 140 | 62 | 176 | 2.50e-20 | 96.3 |
MS.gene03046.t1 | AT5G52170 | 29.575 | 612 | 355 | 19 | 132 | 705 | 105 | 678 | 6.77e-68 | 236 |
MS.gene03046.t1 | AT5G52170 | 41.026 | 117 | 65 | 2 | 26 | 140 | 62 | 176 | 2.52e-20 | 96.3 |
MS.gene03046.t1 | AT5G52170 | 29.575 | 612 | 355 | 19 | 132 | 705 | 105 | 678 | 6.77e-68 | 236 |
MS.gene03046.t1 | AT5G52170 | 41.026 | 117 | 65 | 2 | 26 | 140 | 62 | 176 | 2.52e-20 | 96.3 |
MS.gene03046.t1 | AT5G46880 | 29.483 | 658 | 374 | 21 | 132 | 707 | 159 | 808 | 6.06e-67 | 236 |
MS.gene03046.t1 | AT5G46880 | 40.833 | 120 | 67 | 3 | 22 | 140 | 112 | 228 | 1.56e-18 | 90.9 |
MS.gene03046.t1 | AT5G46880 | 29.483 | 658 | 374 | 21 | 132 | 707 | 159 | 808 | 6.06e-67 | 236 |
MS.gene03046.t1 | AT5G46880 | 40.833 | 120 | 67 | 3 | 22 | 140 | 112 | 228 | 1.56e-18 | 90.9 |
MS.gene03046.t1 | AT5G46880 | 29.483 | 658 | 374 | 21 | 132 | 707 | 159 | 808 | 6.06e-67 | 236 |
MS.gene03046.t1 | AT5G46880 | 40.833 | 120 | 67 | 3 | 22 | 140 | 112 | 228 | 1.56e-18 | 90.9 |
MS.gene03046.t1 | AT4G25530 | 26.853 | 715 | 417 | 18 | 23 | 705 | 42 | 682 | 5.49e-59 | 211 |
MS.gene03046.t1 | AT1G79840 | 30.243 | 453 | 242 | 11 | 22 | 467 | 102 | 487 | 1.75e-56 | 201 |
MS.gene03046.t1 | AT4G00730 | 32.587 | 402 | 227 | 9 | 107 | 475 | 162 | 552 | 2.40e-55 | 199 |
MS.gene03046.t1 | AT4G00730 | 37.313 | 134 | 84 | 0 | 7 | 140 | 120 | 253 | 1.10e-19 | 94.0 |
MS.gene03046.t1 | AT5G07260 | 25.543 | 552 | 340 | 21 | 174 | 705 | 37 | 537 | 2.93e-24 | 107 |
MS.gene03046.t1 | AT5G07260 | 24.908 | 546 | 346 | 18 | 174 | 705 | 37 | 532 | 2.91e-23 | 104 |
MS.gene03046.t1 | AT4G26920 | 25.306 | 245 | 152 | 8 | 182 | 420 | 15 | 234 | 1.45e-14 | 77.4 |
Find 116 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGATGAAGGTTTACCATTAA+TGG | 0.136704 | 2.1:+60736729 | None:intergenic |
TCAGTGGTTACTTTACTTAA+AGG | 0.217161 | 2.1:-60741392 | MS.gene03046:intron |
AACCAAAACTTCACTTGATT+TGG | 0.218865 | 2.1:+60747099 | None:intergenic |
CAATTATATTTCAATTATTC+AGG | 0.226703 | 2.1:-60737700 | MS.gene03046:intron |
TTAAAATCCGGTATATTTAA+AGG | 0.243162 | 2.1:+60736757 | None:intergenic |
TCCACTTGGATGTTTCCTTC+TGG | 0.250199 | 2.1:-60743111 | MS.gene03046:CDS |
CCTGATGTTGTTGATGGTTT+TGG | 0.260108 | 2.1:+60736549 | None:intergenic |
TCTTCATGATTCTTACAATA+TGG | 0.264773 | 2.1:+60745853 | None:intergenic |
TAAGAACCAATGATCCCTTA+TGG | 0.268122 | 2.1:-60744365 | MS.gene03046:CDS |
TGGAGCAGAAAGATTGCTTT+TGG | 0.273244 | 2.1:-60742425 | MS.gene03046:CDS |
ACATCCAAATTCACTCCTTC+TGG | 0.276992 | 2.1:+60736592 | None:intergenic |
AATTTCTAATGAATATTCTA+AGG | 0.277550 | 2.1:-60743073 | MS.gene03046:intron |
AATATTCATTAGAAATTTGA+TGG | 0.280982 | 2.1:+60743079 | None:intergenic |
ATCCAAATCAAGTGAAGTTT+TGG | 0.286140 | 2.1:-60747101 | MS.gene03046:CDS |
TGTTTCGGATGAAAATATTT+TGG | 0.290522 | 2.1:-60744475 | MS.gene03046:CDS |
TCTTCAATTCCTCTTTCATT+TGG | 0.310977 | 2.1:+60745896 | None:intergenic |
TCTTCAATTCCTCTTTCATT+TGG | 0.310977 | 2.1:+60746836 | None:intergenic |
AGAAGATTCAACTCTTGTTT+TGG | 0.315969 | 2.1:+60744257 | None:intergenic |
TAGTCCAGAAGGAGTGAATT+TGG | 0.335626 | 2.1:-60736596 | MS.gene03046:CDS |
GTCGATCACACAATTGCATT+TGG | 0.340096 | 2.1:-60742445 | MS.gene03046:CDS |
AAGCATAATCTTGCTATCTA+AGG | 0.343519 | 2.1:+60741280 | None:intergenic |
TCACATCTTTGCTTGTCGTT+TGG | 0.348151 | 2.1:+60747147 | None:intergenic |
CTCTATACAGACAGTGTGTT+TGG | 0.351748 | 2.1:+60742473 | None:intergenic |
TGAATTATCACCACACCGTT+TGG | 0.357501 | 2.1:+60736823 | None:intergenic |
GAATTATCACCACACCGTTT+GGG | 0.358303 | 2.1:+60736824 | None:intergenic |
GGAGAAAATTCCTGTTGTTT+CGG | 0.362562 | 2.1:-60744490 | MS.gene03046:CDS |
AAAATTTATTGCTACACATA+TGG | 0.374508 | 2.1:-60744511 | MS.gene03046:CDS |
CCGTTGAAATGATCAATAAT+AGG | 0.379183 | 2.1:+60744282 | None:intergenic |
GGTTCTTCAGAAAATCAAAA+TGG | 0.382926 | 2.1:-60743393 | MS.gene03046:CDS |
AAGAACCAATGATCCCTTAT+GGG | 0.382977 | 2.1:-60744364 | MS.gene03046:CDS |
CTTAACCCATAAGGGATCAT+TGG | 0.393215 | 2.1:+60744359 | None:intergenic |
TTCCAGTTCACTTGTTTGAT+AGG | 0.394748 | 2.1:+60748418 | None:intergenic |
AGAATCCCTGATGTTGTTGA+TGG | 0.401806 | 2.1:+60736543 | None:intergenic |
AGAATGCTTCATAGATCCTC+TGG | 0.408780 | 2.1:-60736800 | MS.gene03046:CDS |
GTGATATAGCCACGGAGCTT+GGG | 0.423366 | 2.1:-60747128 | MS.gene03046:CDS |
TACCTATCAAACAAGTGAAC+TGG | 0.424614 | 2.1:-60748420 | MS.gene03046:CDS |
AACATGCAGAAGAACAGAAA+TGG | 0.430765 | 2.1:-60744445 | MS.gene03046:CDS |
TAGATTTAAAGCAAGCCATT+TGG | 0.434363 | 2.1:-60744217 | MS.gene03046:CDS |
ACAATGTCACTTCTTTCCTC+TGG | 0.439586 | 2.1:-60736706 | MS.gene03046:CDS |
TCTCTCTCATCGAATGGTTA+AGG | 0.440789 | 2.1:-60741351 | MS.gene03046:CDS |
CCAAAACCATCAACAACATC+AGG | 0.441289 | 2.1:-60736549 | MS.gene03046:CDS |
AGAAGTGACATTGTTGATGA+AGG | 0.443329 | 2.1:+60736715 | None:intergenic |
ATAAAAGTGCCATTGTTGTT+TGG | 0.449365 | 2.1:+60741227 | None:intergenic |
CTTGTTCACAATAGCGTAGA+AGG | 0.453227 | 2.1:+60743202 | None:intergenic |
GAGATTGCACACATTTCAAC+TGG | 0.456031 | 2.1:-60737735 | MS.gene03046:CDS |
ATTTCTGTTCTTCTGCATGT+TGG | 0.465349 | 2.1:+60744447 | None:intergenic |
AACAAGTTGAAGCTGGTACT+TGG | 0.466646 | 2.1:-60743185 | MS.gene03046:CDS |
GAAACATCCAAGTGGAAGAA+TGG | 0.468632 | 2.1:+60743118 | None:intergenic |
TCTTCATCAGAAAATTTATG+AGG | 0.468658 | 2.1:-60744313 | MS.gene03046:CDS |
AATTCTCGAGATGGTACAAA+AGG | 0.474312 | 2.1:+60743228 | None:intergenic |
TCTTGCTATCTAAGGATTGT+GGG | 0.474566 | 2.1:+60741288 | None:intergenic |
TGTGATATAGCCACGGAGCT+TGG | 0.475429 | 2.1:-60747129 | MS.gene03046:CDS |
AGTTGCAATTTCTGCTAAAG+AGG | 0.476885 | 2.1:-60744403 | MS.gene03046:CDS |
ACAATTGAAGTGCTTGAAGA+AGG | 0.478953 | 2.1:-60743414 | MS.gene03046:CDS |
CACTTCGCGCGGAGAATGAA+AGG | 0.480846 | 2.1:-60745936 | MS.gene03046:CDS |
AATGTGAGACTTAACCCATA+AGG | 0.489274 | 2.1:+60744350 | None:intergenic |
ATGTGAGACTTAACCCATAA+GGG | 0.491613 | 2.1:+60744351 | None:intergenic |
AAACAAAAGGAGTCAACAAA+AGG | 0.492314 | 2.1:-60747073 | MS.gene03046:intron |
CTAAAAGCAACTTAACCAAA+TGG | 0.494670 | 2.1:+60744202 | None:intergenic |
CATTGTTGTTTGGTTGAAAG+AGG | 0.495907 | 2.1:+60741237 | None:intergenic |
ATCTTGCTATCTAAGGATTG+TGG | 0.501981 | 2.1:+60741287 | None:intergenic |
CCCAACTATTGTTACAAAAG+CGG | 0.502689 | 2.1:-60743439 | MS.gene03046:CDS |
CACTTCGAGCGGAGAATGAA+AGG | 0.507621 | 2.1:-60746876 | MS.gene03046:CDS |
CAAGAACAACCAAATGAAAG+AGG | 0.509196 | 2.1:-60745905 | MS.gene03046:CDS |
TCTTTATTGTATTTGAGATG+AGG | 0.509325 | 2.1:+60748462 | None:intergenic |
ACGATAGTCAATCTCATTCG+AGG | 0.514712 | 2.1:-60736669 | MS.gene03046:CDS |
CGAGAACAACCAAATGAAAG+AGG | 0.517989 | 2.1:-60746845 | MS.gene03046:CDS |
ATCATATGATTACGCAAAAG+AGG | 0.522040 | 2.1:-60743148 | MS.gene03046:CDS |
CCTATTATTGATCATTTCAA+CGG | 0.522352 | 2.1:-60744282 | MS.gene03046:CDS |
TTAATGGAATCCTTAAAATC+CGG | 0.522496 | 2.1:+60736745 | None:intergenic |
TTCATTCTCCGCTCGAAGTG+CGG | 0.534827 | 2.1:+60746879 | None:intergenic |
CGAATGAGATTGACTATCGT+TGG | 0.536682 | 2.1:+60736672 | None:intergenic |
AAGTCAAACAGCATCTGAGA+TGG | 0.540298 | 2.1:+60741176 | None:intergenic |
AACAAGCTCCGCACTTCGAG+CGG | 0.542911 | 2.1:-60746887 | MS.gene03046:CDS |
TAGTGGGATGATAATTATCA+AGG | 0.543064 | 2.1:-60737771 | MS.gene03046:CDS |
ATGGACTCCATTCTTCCACT+TGG | 0.544255 | 2.1:-60743125 | MS.gene03046:CDS |
TTCAAGTTGAAGTTGTTGCA+TGG | 0.545091 | 2.1:+60745819 | None:intergenic |
TTCAAGTTGAAGTTGTTGCA+TGG | 0.545091 | 2.1:+60746759 | None:intergenic |
GACTTCTTAAGAGATCCTAC+AGG | 0.557752 | 2.1:-60741158 | MS.gene03046:CDS |
CTATCGATGTCTAGTCCAGA+AGG | 0.560750 | 2.1:-60736607 | MS.gene03046:CDS |
AGTCAAACAGCATCTGAGAT+GGG | 0.566724 | 2.1:+60741177 | None:intergenic |
AACTAGCTCTGCACTTCGCG+CGG | 0.567018 | 2.1:-60745947 | MS.gene03046:CDS |
AACATATCTATTTATGATAG+CGG | 0.567961 | 2.1:-60742364 | MS.gene03046:CDS |
TAAAGGAGAAAACACAACAT+AGG | 0.568052 | 2.1:+60736774 | None:intergenic |
AATTATCACCACACCGTTTG+GGG | 0.574452 | 2.1:+60736825 | None:intergenic |
TATGATTACGCAAAAGAGGA+TGG | 0.580737 | 2.1:-60743144 | MS.gene03046:CDS |
GGTTTCATGGGTTGAACATG+TGG | 0.586718 | 2.1:-60742512 | MS.gene03046:CDS |
ACAAGTTGAAGCTGGTACTT+GGG | 0.588116 | 2.1:-60743184 | MS.gene03046:CDS |
AGAAGGTAAAATTCTCGAGA+TGG | 0.590134 | 2.1:+60743219 | None:intergenic |
ATGTGTGCAATCTCATGCAT+TGG | 0.597886 | 2.1:+60737744 | None:intergenic |
TATAGCCACGGAGCTTGGGA+TGG | 0.601253 | 2.1:-60747124 | MS.gene03046:CDS |
GGAACCTGAAAACGTCCTGT+AGG | 0.601472 | 2.1:+60741143 | None:intergenic |
AAATGCTCGTCTCAAAGAAG+AGG | 0.602513 | 2.1:-60745797 | MS.gene03046:intron |
GAATGCTTCATAGATCCTCT+GGG | 0.604427 | 2.1:-60736799 | MS.gene03046:CDS |
TGATGGATCAAGCATCCAGA+AGG | 0.609676 | 2.1:+60743096 | None:intergenic |
TATTGTGAACAAGTTGAAGC+TGG | 0.610611 | 2.1:-60743192 | MS.gene03046:CDS |
AAGAAGTTCTTTGTTGACCG+TGG | 0.617944 | 2.1:-60736638 | MS.gene03046:CDS |
GGTGCATCTCTCTCATCGAA+TGG | 0.618887 | 2.1:-60741357 | MS.gene03046:CDS |
AACAGCATCTGAGATGGGAA+AGG | 0.626469 | 2.1:+60741182 | None:intergenic |
CTCTTTCAACCAAACAACAA+TGG | 0.627447 | 2.1:-60741236 | MS.gene03046:CDS |
CATCGATAGTTGAAAAGCCA+CGG | 0.634954 | 2.1:+60736621 | None:intergenic |
TGAAAATGCTCGTCTCAAAG+AGG | 0.637885 | 2.1:-60746740 | MS.gene03046:CDS |
AAGAATAAGATATCATGCAG+TGG | 0.648893 | 2.1:-60745877 | MS.gene03046:CDS |
ACTTAAAGGAAAGAAGAGTG+TGG | 0.653545 | 2.1:-60741378 | MS.gene03046:CDS |
ATTATCACCACACCGTTTGG+GGG | 0.657117 | 2.1:+60736826 | None:intergenic |
GCAAAGATGTGATATAGCCA+CGG | 0.659016 | 2.1:-60747136 | MS.gene03046:CDS |
CAAAACCATCAACAACATCA+GGG | 0.661282 | 2.1:-60736548 | MS.gene03046:CDS |
AAAATGGACTCATCTTCAAG+AGG | 0.661814 | 2.1:-60748509 | MS.gene03046:CDS |
AAATGCTCGTCTCAAAGAGG+AGG | 0.665650 | 2.1:-60746737 | MS.gene03046:intron |
ATATCTATTTATGATAGCGG+AGG | 0.672126 | 2.1:-60742361 | MS.gene03046:intron |
ATTGCACACATTTCAACTGG+TGG | 0.679678 | 2.1:-60737732 | MS.gene03046:CDS |
TCCAGAAGGAAACATCCAAG+TGG | 0.683818 | 2.1:+60743110 | None:intergenic |
TGGATCCATCCCAAGCTCCG+TGG | 0.704130 | 2.1:+60747119 | None:intergenic |
GTTGGAGATGACAAAGCCAG+AGG | 0.710138 | 2.1:+60736690 | None:intergenic |
AACACAACATAGGATCCCAG+AGG | 0.760672 | 2.1:+60736784 | None:intergenic |
TGGGAAAGGAAGCAACACTG+AGG | 0.770808 | 2.1:+60741196 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 60736528 | 60748528 | 60736528 | ID=MS.gene03046 |
chr2.1 | mRNA | 60736528 | 60748528 | 60736528 | ID=MS.gene03046.t1;Parent=MS.gene03046 |
chr2.1 | exon | 60748416 | 60748528 | 60748416 | ID=MS.gene03046.t1.exon1;Parent=MS.gene03046.t1 |
chr2.1 | CDS | 60748416 | 60748528 | 60748416 | ID=cds.MS.gene03046.t1;Parent=MS.gene03046.t1 |
chr2.1 | exon | 60747074 | 60747191 | 60747074 | ID=MS.gene03046.t1.exon2;Parent=MS.gene03046.t1 |
chr2.1 | CDS | 60747074 | 60747191 | 60747074 | ID=cds.MS.gene03046.t1;Parent=MS.gene03046.t1 |
chr2.1 | exon | 60746738 | 60746926 | 60746738 | ID=MS.gene03046.t1.exon3;Parent=MS.gene03046.t1 |
chr2.1 | CDS | 60746738 | 60746926 | 60746738 | ID=cds.MS.gene03046.t1;Parent=MS.gene03046.t1 |
chr2.1 | exon | 60745798 | 60745986 | 60745798 | ID=MS.gene03046.t1.exon4;Parent=MS.gene03046.t1 |
chr2.1 | CDS | 60745798 | 60745986 | 60745798 | ID=cds.MS.gene03046.t1;Parent=MS.gene03046.t1 |
chr2.1 | exon | 60744197 | 60744547 | 60744197 | ID=MS.gene03046.t1.exon5;Parent=MS.gene03046.t1 |
chr2.1 | CDS | 60744197 | 60744547 | 60744197 | ID=cds.MS.gene03046.t1;Parent=MS.gene03046.t1 |
chr2.1 | exon | 60743380 | 60743481 | 60743380 | ID=MS.gene03046.t1.exon6;Parent=MS.gene03046.t1 |
chr2.1 | CDS | 60743380 | 60743481 | 60743380 | ID=cds.MS.gene03046.t1;Parent=MS.gene03046.t1 |
chr2.1 | exon | 60743074 | 60743277 | 60743074 | ID=MS.gene03046.t1.exon7;Parent=MS.gene03046.t1 |
chr2.1 | CDS | 60743074 | 60743277 | 60743074 | ID=cds.MS.gene03046.t1;Parent=MS.gene03046.t1 |
chr2.1 | exon | 60742362 | 60742533 | 60742362 | ID=MS.gene03046.t1.exon8;Parent=MS.gene03046.t1 |
chr2.1 | CDS | 60742362 | 60742533 | 60742362 | ID=cds.MS.gene03046.t1;Parent=MS.gene03046.t1 |
chr2.1 | exon | 60741148 | 60741410 | 60741148 | ID=MS.gene03046.t1.exon9;Parent=MS.gene03046.t1 |
chr2.1 | CDS | 60741148 | 60741410 | 60741148 | ID=cds.MS.gene03046.t1;Parent=MS.gene03046.t1 |
chr2.1 | exon | 60737701 | 60737790 | 60737701 | ID=MS.gene03046.t1.exon10;Parent=MS.gene03046.t1 |
chr2.1 | CDS | 60737701 | 60737790 | 60737701 | ID=cds.MS.gene03046.t1;Parent=MS.gene03046.t1 |
chr2.1 | exon | 60736528 | 60736863 | 60736528 | ID=MS.gene03046.t1.exon11;Parent=MS.gene03046.t1 |
chr2.1 | CDS | 60736528 | 60736863 | 60736528 | ID=cds.MS.gene03046.t1;Parent=MS.gene03046.t1 |
Gene Sequence |
Protein sequence |