AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030476

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030476.t1 MTR_8g099750 98.667 150 2 0 1 150 1 150 4.92e-111 314
MS.gene030476.t1 MTR_3g098810 75.510 147 34 1 1 145 1 147 3.15e-79 232
MS.gene030476.t1 MTR_3g098810 75.510 147 34 1 1 145 1 147 1.96e-78 232
MS.gene030476.t1 MTR_7g005280 69.286 140 41 2 1 139 1 139 4.30e-68 207
MS.gene030476.t1 MTR_4g089135 54.348 138 61 1 13 148 14 151 7.51e-48 157
MS.gene030476.t1 MTR_7g085220 53.237 139 56 3 12 141 6 144 7.75e-47 155
MS.gene030476.t1 MTR_4g081870 56.489 131 53 2 12 140 7 135 9.07e-47 153
MS.gene030476.t1 MTR_2g080010 54.074 135 60 1 14 146 15 149 1.47e-46 154
MS.gene030476.t1 MTR_5g041940 56.589 129 52 2 14 140 3 129 1.33e-45 149
MS.gene030476.t1 MTR_5g012080 53.741 147 57 5 9 149 2 143 7.00e-45 150
MS.gene030476.t1 MTR_7g100990 49.635 137 67 1 13 147 10 146 7.74e-45 149
MS.gene030476.t1 MTR_2g093810 53.435 131 59 1 14 142 14 144 8.63e-45 149
MS.gene030476.t1 MTR_3g088110 53.383 133 57 2 13 143 6 135 7.29e-44 146
MS.gene030476.t1 MTR_4g036030 49.315 146 64 3 9 149 2 142 3.13e-42 143
MS.gene030476.t1 MTR_4g101680 51.389 144 60 4 9 147 2 140 5.03e-42 143
MS.gene030476.t1 MTR_3g064580 52.857 140 60 2 14 149 6 143 6.51e-42 147
MS.gene030476.t1 MTR_2157s0010 51.938 129 59 2 14 139 8 136 9.74e-42 140
MS.gene030476.t1 MTR_8g094580 49.275 138 65 2 10 145 3 137 2.88e-41 139
MS.gene030476.t1 MTR_8g076110 48.148 135 63 2 14 143 6 138 4.67e-41 139
MS.gene030476.t1 MTR_6g011860 49.286 140 68 2 9 146 10 148 7.68e-41 140
MS.gene030476.t1 MTR_5g040420 51.587 126 59 1 16 139 16 141 1.47e-40 140
MS.gene030476.t1 MTR_8g467490 48.551 138 65 2 8 139 4 141 1.63e-40 140
MS.gene030476.t1 MTR_5g076850 53.077 130 55 2 14 139 6 133 2.08e-40 143
MS.gene030476.t1 MTR_1g096430 50.769 130 57 2 14 138 7 134 3.78e-40 137
MS.gene030476.t1 MTR_2g078700 48.462 130 65 1 12 139 21 150 1.16e-39 137
MS.gene030476.t1 MTR_2g068880 47.857 140 67 3 6 139 13 152 1.55e-39 135
MS.gene030476.t1 MTR_6g477900 48.201 139 66 2 14 148 6 142 2.45e-39 133
MS.gene030476.t1 MTR_3g096920 50.000 140 61 4 10 145 3 137 3.24e-39 134
MS.gene030476.t1 MTR_5g021710 48.092 131 61 2 14 139 8 136 3.82e-39 135
MS.gene030476.t1 MTR_8g059170 48.529 136 66 2 14 147 14 147 5.95e-39 134
MS.gene030476.t1 MTR_2g064090 49.618 131 60 2 14 140 6 134 1.32e-38 134
MS.gene030476.t1 MTR_2g068920 50.769 130 57 3 16 139 23 151 1.38e-38 132
MS.gene030476.t1 MTR_6g084430 47.692 130 64 2 14 141 5 132 1.59e-38 133
MS.gene030476.t1 MTR_2g079990 47.482 139 69 2 14 150 16 152 1.76e-38 134
MS.gene030476.t1 MTR_2g062730 47.407 135 65 2 10 139 6 139 1.76e-38 133
MS.gene030476.t1 MTR_2g079990 47.482 139 69 2 14 150 16 152 2.03e-38 134
MS.gene030476.t1 MTR_3g096920 48.551 138 66 2 10 145 3 137 2.16e-38 133
MS.gene030476.t1 MTR_3g093040 48.062 129 61 2 14 138 108 234 3.04e-38 132
MS.gene030476.t1 MTR_3g096140 45.652 138 69 2 16 149 9 144 1.30e-37 129
MS.gene030476.t1 MTR_4g035590 48.855 131 60 2 14 139 8 136 1.85e-37 131
MS.gene030476.t1 MTR_3g435150 48.438 128 62 2 14 139 16 141 1.99e-37 130
MS.gene030476.t1 MTR_4g108760 47.656 128 63 2 14 139 17 142 2.52e-37 130
MS.gene030476.t1 MTR_8g024480 44.444 153 75 4 2 148 3 151 2.63e-37 132
MS.gene030476.t1 MTR_5g014300 46.043 139 66 2 10 139 2 140 4.33e-37 129
MS.gene030476.t1 MTR_3g109340 45.312 128 68 1 14 139 22 149 4.78e-37 130
MS.gene030476.t1 MTR_3g109340 45.312 128 68 1 14 139 22 149 5.24e-37 130
MS.gene030476.t1 MTR_5g069030 50.000 132 60 2 11 138 22 151 8.63e-37 133
MS.gene030476.t1 MTR_3g093050 47.727 132 63 2 11 138 19 148 9.07e-37 132
MS.gene030476.t1 MTR_4g098630 49.275 138 59 3 12 141 4 138 9.77e-37 128
MS.gene030476.t1 MTR_3g096140 45.652 138 69 2 16 149 9 144 1.04e-36 129
MS.gene030476.t1 MTR_1g008740 47.368 133 59 3 14 139 13 141 1.28e-36 129
MS.gene030476.t1 MTR_3g093050 47.727 132 63 2 11 138 19 148 1.52e-36 132
MS.gene030476.t1 MTR_1g008740 47.368 133 59 3 14 139 27 155 1.53e-36 129
MS.gene030476.t1 MTR_7g085260 44.928 138 72 2 14 147 17 154 4.87e-36 128
MS.gene030476.t1 MTR_8g023840 47.692 130 62 3 14 138 11 139 5.26e-36 128
MS.gene030476.t1 MTR_6g012670 44.526 137 72 2 13 147 19 153 5.59e-36 126
MS.gene030476.t1 MTR_3g116070 45.736 129 67 2 14 139 23 151 6.74e-36 127
MS.gene030476.t1 MTR_5g090970 49.612 129 57 3 16 139 20 145 8.10e-36 125
MS.gene030476.t1 MTR_6g032770 44.531 128 69 1 14 139 18 145 8.12e-36 127
MS.gene030476.t1 MTR_5g090970 49.231 130 57 3 16 139 20 146 8.18e-36 125
MS.gene030476.t1 MTR_4g075980 49.606 127 61 2 16 139 17 143 8.46e-36 125
MS.gene030476.t1 MTR_1g069805 42.963 135 75 1 7 139 3 137 1.33e-35 124
MS.gene030476.t1 MTR_3g070030 45.926 135 69 2 7 139 12 144 1.42e-35 126
MS.gene030476.t1 MTR_4g134460 48.092 131 65 2 16 144 56 185 1.73e-35 127
MS.gene030476.t1 MTR_1g090720 49.219 128 59 2 14 137 42 167 9.09e-35 126
MS.gene030476.t1 MTR_2g086880 45.038 131 67 2 10 137 14 142 1.28e-34 126
MS.gene030476.t1 MTR_2g086880 45.038 131 67 2 10 137 14 142 1.32e-34 126
MS.gene030476.t1 MTR_8g023860 45.865 133 66 3 11 138 9 140 2.59e-34 124
MS.gene030476.t1 MTR_7g097090 44.615 130 70 1 12 139 8 137 3.23e-34 121
MS.gene030476.t1 MTR_8g063550 45.522 134 67 2 10 139 2 133 4.80e-34 122
MS.gene030476.t1 MTR_8g093580 43.750 144 75 2 10 149 2 143 5.63e-34 124
MS.gene030476.t1 MTR_8g063550 45.522 134 67 2 10 139 2 133 9.81e-34 122
MS.gene030476.t1 MTR_8g063550 45.522 134 67 2 10 139 2 133 1.56e-33 122
MS.gene030476.t1 MTR_7g011130 43.704 135 72 2 7 139 12 144 2.99e-33 120
MS.gene030476.t1 MTR_1g097300 48.438 128 60 2 16 139 21 146 3.59e-33 122
MS.gene030476.t1 MTR_8g023930 46.923 130 63 3 14 138 24 152 1.35e-32 120
MS.gene030476.t1 MTR_2g064470 42.308 130 69 3 12 139 9 134 3.75e-32 116
MS.gene030476.t1 MTR_7g011120 42.963 135 73 2 7 139 1 133 3.97e-32 116
MS.gene030476.t1 MTR_4g052620 41.259 143 76 3 14 149 5 146 4.48e-31 112
MS.gene030476.t1 MTR_4g094302 41.732 127 66 3 14 139 11 130 1.26e-30 108
MS.gene030476.t1 MTR_1g090723 43.182 132 66 4 16 141 10 138 1.67e-30 115
MS.gene030476.t1 MTR_1g090723 43.182 132 66 4 16 141 10 138 1.90e-30 115
MS.gene030476.t1 MTR_1g090723 43.182 132 66 4 16 141 10 138 1.98e-30 115
MS.gene030476.t1 MTR_2g086690 41.549 142 74 3 15 148 5 145 4.07e-30 109
MS.gene030476.t1 MTR_4g094302 41.732 127 66 3 14 139 11 130 8.13e-30 107
MS.gene030476.t1 MTR_7g070140 62.821 78 29 0 62 139 14 91 1.03e-29 105
MS.gene030476.t1 MTR_8g023900 41.606 137 74 3 17 148 196 331 2.35e-29 111
MS.gene030476.t1 MTR_8g023900 39.437 142 78 4 14 150 12 150 5.10e-27 105
MS.gene030476.t1 MTR_0036s0150 41.135 141 74 4 16 150 7 144 3.05e-29 111
MS.gene030476.t1 MTR_3g070040 45.082 122 64 2 18 139 12 130 5.10e-29 108
MS.gene030476.t1 MTR_3g096140 42.276 123 65 2 31 149 3 123 2.95e-28 106
MS.gene030476.t1 MTR_7g105170 38.356 146 79 4 14 150 4 147 4.39e-27 102
MS.gene030476.t1 MTR_8g023880 36.301 146 71 5 12 138 5 147 2.19e-22 90.1
MS.gene030476.t1 MTR_8g094580 49.383 81 38 1 65 145 6 83 3.33e-22 88.6
MS.gene030476.t1 MTR_8g093790 37.984 129 60 5 13 139 9 119 1.91e-21 85.5
MS.gene030476.t1 MTR_7g083360 28.889 135 88 4 7 137 3 133 1.32e-15 69.7
MS.gene030476.t1 MTR_7g083330 31.008 129 81 4 13 137 17 141 8.07e-15 68.6
MS.gene030476.t1 MTR_7g083370 28.148 135 89 4 7 137 3 133 1.60e-14 66.6
MS.gene030476.t1 MTR_3g096400 32.331 133 74 5 13 139 6 128 2.22e-14 67.8
MS.gene030476.t1 MTR_2g014680 32.000 150 79 8 9 139 48 193 6.56e-13 64.7
MS.gene030476.t1 MTR_7g070150 76.667 30 7 0 110 139 8 37 4.40e-12 58.9
MS.gene030476.t1 MTR_7g116460 30.769 130 77 4 20 139 11 137 1.16e-11 60.5
MS.gene030476.t1 MTR_4g078875 30.000 150 83 7 9 139 43 189 7.88e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030476.t1 AT5G13180 68.345 139 43 1 1 139 1 138 9.31e-67 203
MS.gene030476.t1 AT2G33480 62.500 144 50 3 1 143 1 141 6.83e-60 186
MS.gene030476.t1 AT2G33480 62.500 144 50 3 1 143 1 141 8.18e-60 186
MS.gene030476.t1 AT1G69490 56.154 130 53 2 12 139 7 134 2.53e-46 152
MS.gene030476.t1 AT1G61110 55.797 138 56 3 7 141 9 144 1.50e-45 151
MS.gene030476.t1 AT3G04070 51.079 139 63 2 8 141 4 142 4.22e-45 150
MS.gene030476.t1 AT3G04070 51.079 139 63 2 8 141 4 142 6.22e-45 150
MS.gene030476.t1 AT3G15510 54.198 131 58 1 18 146 21 151 9.96e-45 150
MS.gene030476.t1 AT1G77450 51.049 143 64 3 6 145 1 140 5.87e-44 145
MS.gene030476.t1 AT4G17980 50.000 138 65 1 10 143 2 139 8.94e-44 145
MS.gene030476.t1 AT4G17980 50.000 138 65 1 10 143 2 139 1.74e-43 145
MS.gene030476.t1 AT5G46590 48.951 143 68 2 10 148 2 143 7.74e-43 143
MS.gene030476.t1 AT5G46590 48.951 143 68 2 10 148 2 143 1.12e-42 143
MS.gene030476.t1 AT1G33060 51.493 134 59 2 14 143 24 155 3.16e-42 148
MS.gene030476.t1 AT1G33060 51.493 134 59 2 14 143 24 155 4.02e-42 148
MS.gene030476.t1 AT1G65910 53.846 130 54 2 14 139 6 133 4.59e-42 147
MS.gene030476.t1 AT1G01720 51.111 135 61 2 13 145 6 137 8.12e-42 140
MS.gene030476.t1 AT3G10490 46.809 141 69 2 11 147 24 162 1.06e-41 139
MS.gene030476.t1 AT5G39820 47.794 136 69 1 16 149 22 157 3.02e-41 140
MS.gene030476.t1 AT1G12260 47.260 146 67 3 9 149 2 142 3.33e-41 140
MS.gene030476.t1 AT1G71930 48.175 137 64 2 12 143 7 141 6.02e-41 139
MS.gene030476.t1 AT1G71930 48.175 137 64 2 12 143 7 141 6.02e-41 139
MS.gene030476.t1 AT1G62700 48.630 146 65 3 9 149 2 142 9.66e-41 140
MS.gene030476.t1 AT1G62700 48.630 146 65 3 9 149 2 142 9.66e-41 140
MS.gene030476.t1 AT1G12260 47.260 146 67 3 9 149 2 142 9.84e-41 140
MS.gene030476.t1 AT1G32770 46.000 150 74 2 2 146 4 151 1.06e-40 139
MS.gene030476.t1 AT5G62380 48.507 134 62 2 11 139 4 135 1.91e-40 139
MS.gene030476.t1 AT5G62380 48.507 134 62 2 11 139 4 135 1.91e-40 139
MS.gene030476.t1 AT3G10480 46.853 143 70 2 11 149 24 164 2.13e-40 140
MS.gene030476.t1 AT5G39610 50.781 128 59 2 14 139 20 145 2.33e-40 137
MS.gene030476.t1 AT3G10480 46.853 143 70 2 11 149 24 164 2.33e-40 140
MS.gene030476.t1 AT1G26870 51.181 127 60 1 14 138 16 142 3.36e-40 139
MS.gene030476.t1 AT5G17260 52.308 130 56 2 14 139 6 133 5.01e-40 140
MS.gene030476.t1 AT4G27410 46.763 139 70 2 14 150 14 150 6.02e-40 136
MS.gene030476.t1 AT2G18060 48.092 131 61 2 14 139 9 137 1.03e-39 137
MS.gene030476.t1 AT2G18060 48.092 131 61 2 14 139 9 137 1.03e-39 137
MS.gene030476.t1 AT3G03200 50.000 134 61 2 14 143 6 137 1.47e-39 139
MS.gene030476.t1 AT3G29035 50.000 128 60 2 14 139 24 149 1.86e-39 135
MS.gene030476.t1 AT4G35580 50.388 129 58 2 14 138 9 135 2.23e-39 139
MS.gene030476.t1 AT4G35580 50.388 129 58 2 14 138 9 135 2.82e-39 139
MS.gene030476.t1 AT4G35580 50.388 129 58 2 14 138 9 135 3.00e-39 139
MS.gene030476.t1 AT4G36160 47.328 131 62 2 14 139 14 142 3.02e-39 136
MS.gene030476.t1 AT5G53950 49.219 128 63 1 14 139 17 144 3.48e-39 136
MS.gene030476.t1 AT4G36160 47.328 131 62 2 14 139 10 138 3.54e-39 136
MS.gene030476.t1 AT4G36160 47.328 131 62 2 14 139 10 138 3.54e-39 136
MS.gene030476.t1 AT3G15500 48.921 139 67 2 14 150 14 150 3.65e-39 134
MS.gene030476.t1 AT1G76420 49.231 130 64 1 14 141 22 151 4.33e-39 135
MS.gene030476.t1 AT1G52890 48.921 139 67 2 14 150 14 150 4.97e-39 134
MS.gene030476.t1 AT2G17040 50.394 127 60 2 16 139 8 134 8.10e-39 132
MS.gene030476.t1 AT3G17730 46.429 140 69 2 14 149 6 143 1.01e-38 131
MS.gene030476.t1 AT3G10490 47.143 140 68 2 12 147 25 162 1.27e-38 136
MS.gene030476.t1 AT3G61910 44.681 141 71 2 4 139 1 139 1.31e-38 134
MS.gene030476.t1 AT3G04060 48.485 132 63 3 11 139 17 146 1.49e-38 133
MS.gene030476.t1 AT1G79580 47.482 139 67 2 10 143 13 150 2.34e-38 134
MS.gene030476.t1 AT1G79580 47.482 139 67 2 10 143 13 150 2.34e-38 134
MS.gene030476.t1 AT1G79580 47.482 139 67 2 10 143 13 150 2.34e-38 134
MS.gene030476.t1 AT1G79580 47.482 139 67 2 10 143 13 150 2.34e-38 134
MS.gene030476.t1 AT1G79580 47.482 139 67 2 10 143 13 150 2.34e-38 134
MS.gene030476.t1 AT4G10350 48.889 135 62 2 14 143 9 141 2.42e-38 133
MS.gene030476.t1 AT1G32510 48.630 146 66 2 12 148 4 149 2.44e-38 131
MS.gene030476.t1 AT5G66300 46.429 140 66 3 14 148 12 147 3.06e-38 131
MS.gene030476.t1 AT5G61430 48.438 128 62 2 14 139 16 141 3.24e-38 132
MS.gene030476.t1 AT5G07680 48.438 128 62 2 14 139 3 128 4.44e-38 132
MS.gene030476.t1 AT5G07680 48.438 128 62 2 14 139 17 142 4.53e-38 132
MS.gene030476.t1 AT1G33280 48.889 135 62 2 14 143 8 140 5.14e-38 131
MS.gene030476.t1 AT2G46770 47.445 137 63 3 9 139 11 144 5.84e-38 132
MS.gene030476.t1 AT3G15170 45.385 130 69 1 12 139 18 147 5.92e-38 131
MS.gene030476.t1 AT2G02450 48.855 131 64 2 16 144 53 182 6.44e-38 132
MS.gene030476.t1 AT2G02450 48.855 131 64 2 16 144 53 182 7.99e-38 133
MS.gene030476.t1 AT1G52880 51.128 133 61 2 18 146 21 153 1.35e-37 130
MS.gene030476.t1 AT2G24430 46.043 139 73 1 14 150 16 154 1.98e-37 130
MS.gene030476.t1 AT2G24430 46.043 139 73 1 14 150 16 154 1.98e-37 130
MS.gene030476.t1 AT5G63790 46.043 139 70 2 14 150 50 185 2.73e-37 129
MS.gene030476.t1 AT5G63790 46.043 139 70 2 14 150 60 195 3.30e-37 129
MS.gene030476.t1 AT5G08790 49.242 132 62 2 14 143 7 135 3.30e-37 129
MS.gene030476.t1 AT3G18400 46.875 128 64 2 14 139 5 130 3.80e-37 129
MS.gene030476.t1 AT1G54330 45.255 137 69 2 14 146 6 140 5.33e-37 129
MS.gene030476.t1 AT4G27410 42.308 156 69 3 14 150 14 167 6.76e-37 129
MS.gene030476.t1 AT5G18270 46.043 139 70 3 4 139 11 147 9.06e-37 129
MS.gene030476.t1 AT3G10500 46.429 140 65 3 8 141 3 138 1.14e-36 132
MS.gene030476.t1 AT5G18270 46.043 139 70 3 4 139 11 147 1.14e-36 129
MS.gene030476.t1 AT5G24590 48.485 132 63 2 11 138 10 140 2.86e-36 129
MS.gene030476.t1 AT3G12977 45.865 133 62 3 12 139 16 143 3.83e-36 125
MS.gene030476.t1 AT2G43000 45.255 137 71 2 16 150 20 154 9.37e-36 125
MS.gene030476.t1 AT3G10480 38.418 177 70 3 10 149 23 197 4.23e-35 127
MS.gene030476.t1 AT5G04395 44.366 142 63 2 14 139 28 169 5.74e-35 120
MS.gene030476.t1 AT3G12910 47.656 128 63 3 16 139 23 150 5.92e-35 123
MS.gene030476.t1 AT3G49530 46.512 129 64 2 14 138 13 140 7.55e-35 125
MS.gene030476.t1 AT3G49530 46.512 129 64 2 14 138 13 140 1.71e-34 125
MS.gene030476.t1 AT5G04410 44.118 136 70 2 8 139 3 136 3.74e-34 125
MS.gene030476.t1 AT1G34180 50.781 128 57 2 16 139 18 143 6.62e-34 123
MS.gene030476.t1 AT1G34180 50.781 128 57 2 16 139 18 143 1.34e-33 124
MS.gene030476.t1 AT3G44290 41.007 139 77 2 7 142 7 143 4.74e-33 116
MS.gene030476.t1 AT5G09330 48.148 135 62 3 10 139 2 133 7.05e-33 121
MS.gene030476.t1 AT5G09330 48.148 135 62 3 10 139 2 133 7.05e-33 121
MS.gene030476.t1 AT5G09330 48.148 135 62 3 10 139 2 133 7.05e-33 121
MS.gene030476.t1 AT5G09330 48.148 135 62 3 10 139 2 133 7.05e-33 121
MS.gene030476.t1 AT5G09330 48.148 135 62 3 10 139 2 133 7.05e-33 121
MS.gene030476.t1 AT1G34190 48.438 128 60 2 16 139 18 143 7.29e-33 122
MS.gene030476.t1 AT2G27300 42.857 140 75 2 1 137 1 138 7.98e-33 118
MS.gene030476.t1 AT1G56010 44.030 134 64 4 12 139 17 145 1.13e-32 118
MS.gene030476.t1 AT5G64060 43.284 134 70 2 10 139 2 133 2.69e-32 117
MS.gene030476.t1 AT1G34180 46.429 140 57 2 16 139 18 155 2.78e-32 119
MS.gene030476.t1 AT3G44290 41.007 139 77 2 7 142 7 143 4.36e-32 116
MS.gene030476.t1 AT1G34180 46.429 140 57 2 16 139 18 155 5.16e-32 119
MS.gene030476.t1 AT5G22290 41.600 125 68 2 16 137 23 145 4.93e-31 114
MS.gene030476.t1 AT4G28530 39.735 151 73 2 7 139 3 153 6.46e-31 114
MS.gene030476.t1 AT4G01520 43.939 132 67 4 15 139 5 136 1.48e-28 107
MS.gene030476.t1 AT5G50820 40.136 147 79 5 6 149 8 148 6.83e-28 102
MS.gene030476.t1 AT4G01550 44.961 129 65 3 17 139 7 135 1.44e-27 106
MS.gene030476.t1 AT2G33480 56.471 85 34 2 59 143 3 84 1.45e-27 102
MS.gene030476.t1 AT5G64530 41.732 127 62 3 14 139 3 118 2.97e-27 99.8
MS.gene030476.t1 AT5G14000 37.778 135 80 2 7 139 8 140 5.44e-27 99.4
MS.gene030476.t1 AT4G01540 43.077 130 67 4 17 139 7 136 9.35e-27 103
MS.gene030476.t1 AT1G32870 47.826 138 60 5 7 139 5 135 1.01e-26 104
MS.gene030476.t1 AT4G01540 43.077 130 67 4 17 139 7 136 1.11e-26 103
MS.gene030476.t1 AT1G32870 47.826 138 60 5 7 139 5 135 1.17e-26 104
MS.gene030476.t1 AT1G32870 47.826 138 60 5 7 139 41 171 1.21e-26 104
MS.gene030476.t1 AT5G64530 41.732 127 62 3 14 139 3 118 1.41e-26 99.0
MS.gene030476.t1 AT5G14000 35.616 146 90 2 7 150 8 151 1.59e-26 99.4
MS.gene030476.t1 AT4G01540 43.077 130 67 4 17 139 7 136 1.85e-26 103
MS.gene030476.t1 AT4G01540 43.077 130 67 4 17 139 7 136 2.78e-26 102
MS.gene030476.t1 AT5G22380 39.716 141 75 4 17 149 8 146 7.46e-24 93.2
MS.gene030476.t1 AT3G44350 39.161 143 77 4 14 149 5 144 1.31e-23 90.5
MS.gene030476.t1 AT1G02230 37.037 135 75 4 15 142 4 135 1.44e-23 94.7
MS.gene030476.t1 AT1G02250 39.695 131 69 4 15 138 4 131 1.45e-22 92.0
MS.gene030476.t1 AT3G44350 39.161 143 77 4 14 149 5 144 1.54e-22 89.7
MS.gene030476.t1 AT3G12977 52.703 74 33 1 66 139 19 90 6.17e-22 87.8
MS.gene030476.t1 AT3G04420 38.760 129 71 3 15 137 4 130 7.54e-22 89.0
MS.gene030476.t1 AT3G04420 38.931 131 68 4 15 137 4 130 8.80e-22 89.4
MS.gene030476.t1 AT4G10350 49.398 83 40 1 61 143 14 94 1.96e-21 87.8
MS.gene030476.t1 AT1G01010 38.060 134 69 4 17 138 6 137 3.29e-21 88.6
MS.gene030476.t1 AT5G61430 49.333 75 36 1 65 139 6 78 5.70e-20 83.6
MS.gene030476.t1 AT1G56010 49.296 71 34 1 69 139 10 78 3.97e-19 81.3
MS.gene030476.t1 AT1G02220 38.931 131 65 5 15 137 4 127 1.93e-18 80.9
MS.gene030476.t1 AT3G10490 50.000 64 30 1 84 147 1 62 5.19e-18 79.3
MS.gene030476.t1 AT3G10490 50.000 64 30 1 84 147 1 62 5.19e-18 79.3
MS.gene030476.t1 AT3G56530 33.333 144 79 5 14 147 52 188 2.87e-17 77.0
MS.gene030476.t1 AT2G18060 58.000 50 19 1 90 139 2 49 6.18e-16 72.8
MS.gene030476.t1 AT2G43000 47.297 74 37 1 77 150 5 76 7.48e-16 71.2
MS.gene030476.t1 AT4G28530 35.965 114 55 2 7 102 3 116 2.93e-15 71.2
MS.gene030476.t1 AT3G04430 35.606 132 71 4 20 138 6 136 5.08e-15 69.3
MS.gene030476.t1 AT1G28470 31.875 160 87 9 2 143 66 221 2.53e-13 66.2
MS.gene030476.t1 AT3G55210 27.333 150 91 3 14 147 11 158 2.36e-12 63.2
MS.gene030476.t1 AT5G22290 51.064 47 21 1 91 137 2 46 5.17e-12 61.6
MS.gene030476.t1 AT4G29230 31.373 153 74 9 14 139 48 196 8.58e-11 59.3
MS.gene030476.t1 AT4G29230 32.026 153 73 9 14 139 48 196 9.93e-11 58.9

Find 36 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTATACTTTGCTTCCT+TGG 0.288379 4.4:-7138569 None:intergenic
AATCAGTTCTAGACCCATTT+GGG 0.329258 4.4:-7138723 None:intergenic
GAACAACAAAATGTGGATAT+TGG 0.340464 4.4:+7138608 MS.gene030476:CDS
TCAACTTGTAATGGCATTGT+AGG 0.349375 4.4:+7138664 MS.gene030476:CDS
CAATCAGTTCTAGACCCATT+TGG 0.376037 4.4:-7138724 None:intergenic
ATTTCATCTTCAACTTGTAA+TGG 0.394997 4.4:+7138655 MS.gene030476:CDS
TGTGGATATTGGAAGGCAAC+AGG 0.396475 4.4:+7138619 MS.gene030476:CDS
TGTTTGCAAGTATGATCCTT+GGG 0.435717 4.4:+7138059 MS.gene030476:CDS
CAAAGTATAGAAATAGTAAT+CGG 0.458697 4.4:+7138578 MS.gene030476:CDS
AACATTGACCTCAGGAATGA+TGG 0.468324 4.4:-7138040 None:intergenic
AACACAAGCTCTTCATCTGT+TGG 0.471066 4.4:-7137973 None:intergenic
CAAGCTCTTCATCTGTTGGT+TGG 0.493179 4.4:-7137969 None:intergenic
TATGAAGGGAAATCCCCAAA+TGG 0.497265 4.4:+7138709 MS.gene030476:CDS
TATGATCCTTGGGATTTGCC+AGG 0.504380 4.4:+7138069 MS.gene030476:CDS
ATGTTTGCAAGTATGATCCT+TGG 0.507170 4.4:+7138058 MS.gene030476:CDS
AGGAATGATGGAAGCAGGCA+AGG 0.516507 4.4:-7138028 None:intergenic
ACCTCAGGAATGATGGAAGC+AGG 0.516623 4.4:-7138033 None:intergenic
ATGAAGGGAAATCCCCAAAT+GGG 0.516990 4.4:+7138710 MS.gene030476:CDS
AACAAAATGTGGATATTGGA+AGG 0.533417 4.4:+7138612 MS.gene030476:CDS
GCCTGCTTCCATCATTCCTG+AGG 0.534650 4.4:+7138032 MS.gene030476:CDS
CAACTTGTAATGGCATTGTA+GGG 0.535602 4.4:+7138665 MS.gene030476:CDS
TACTTGCAAACATTGACCTC+AGG 0.544904 4.4:-7138048 None:intergenic
GGAATGATGGAAGCAGGCAA+GGG 0.549247 4.4:-7138027 None:intergenic
CAAATGGGTCTAGAACTGAT+TGG 0.560786 4.4:+7138725 MS.gene030476:CDS
ATGAGTAGAACAACAAAATG+TGG 0.563550 4.4:+7138601 MS.gene030476:CDS
TACTGACCTGGCAAATCCCA+AGG 0.595838 4.4:-7138075 None:intergenic
TAGTAGTTTCCACATTGATG+AGG 0.604094 4.4:-7138765 None:intergenic
GGAGTGAGTAGATTGCCTCC+TGG 0.605400 4.4:+7137937 MS.gene030476:CDS
GTGGATATTGGAAGGCAACA+GGG 0.617430 4.4:+7138620 MS.gene030476:CDS
ATCAGTTCTAGACCCATTTG+GGG 0.628898 4.4:-7138722 None:intergenic
GTTGGTTGGAAACGAAAACC+AGG 0.630000 4.4:-7137955 None:intergenic
GAATGATGGAAGCAGGCAAG+GGG 0.638798 4.4:-7138026 None:intergenic
TGAATATCGCCTCATCAATG+TGG 0.647802 4.4:+7138756 MS.gene030476:CDS
AACTACTAACAACTCAACCC+AGG 0.658665 4.4:+7138780 MS.gene030476:CDS
GAGGTTGTGATGAACAAGAG+AGG 0.686120 4.4:+7138533 MS.gene030476:CDS
GGTTGGAAACGAAAACCAGG+AGG 0.757632 4.4:-7137952 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATTTAGTGTAAAAA+AGG - chr4.4:7138341-7138360 None:intergenic 10.0%
!!! CTTTTCTAAAAAAAAATTTA+TGG + chr4.4:7138206-7138225 MS.gene030476:intron 10.0%
!!! AAGCTGAATTTTATTAAAAA+TGG + chr4.4:7137916-7137935 MS.gene030476:CDS 15.0%
!!! TAAATCTTATTAACTAGTTT+TGG + chr4.4:7138411-7138430 MS.gene030476:intron 15.0%
!! CAAAGTATAGAAATAGTAAT+CGG + chr4.4:7138578-7138597 MS.gene030476:CDS 20.0%
!! TAGCCATTAACAAATAATAA+AGG + chr4.4:7138461-7138480 MS.gene030476:intron 20.0%
!! TTGTAAAAAAAAATCAACGT+TGG + chr4.4:7138176-7138195 MS.gene030476:intron 20.0%
!!! TCTCCTTTATTATTTGTTAA+TGG - chr4.4:7138467-7138486 None:intergenic 20.0%
!!! TTAACATTGTTTTGTTTGAT+TGG + chr4.4:7138501-7138520 MS.gene030476:intron 20.0%
! AAAAAAAATTTATGGTAGCC+AGG + chr4.4:7138214-7138233 MS.gene030476:intron 25.0%
! ATTTCATCTTCAACTTGTAA+TGG + chr4.4:7138655-7138674 MS.gene030476:CDS 25.0%
! GACAATGTATAATATATGCA+AGG - chr4.4:7138254-7138273 None:intergenic 25.0%
! TAACAAATTAATACTACACC+CGG + chr4.4:7138103-7138122 MS.gene030476:intron 25.0%
! TTTGTTTGATTGGTATGTAT+AGG + chr4.4:7138511-7138530 MS.gene030476:intron 25.0%
!!! AAAACTTTGGTTTTCTATGA+AGG + chr4.4:7138694-7138713 MS.gene030476:CDS 25.0%
!!! AAACTTTGGTTTTCTATGAA+GGG + chr4.4:7138695-7138714 MS.gene030476:CDS 25.0%
AACAAAATGTGGATATTGGA+AGG + chr4.4:7138612-7138631 MS.gene030476:CDS 30.0%
AACAAATTAATACTACACCC+GGG + chr4.4:7138104-7138123 MS.gene030476:intron 30.0%
ATGAGTAGAACAACAAAATG+TGG + chr4.4:7138601-7138620 MS.gene030476:CDS 30.0%
ATTTCTATACTTTGCTTCCT+TGG - chr4.4:7138572-7138591 None:intergenic 30.0%
GAACAACAAAATGTGGATAT+TGG + chr4.4:7138608-7138627 MS.gene030476:CDS 30.0%
TGTATAATATATGCAAGGTC+TGG - chr4.4:7138249-7138268 None:intergenic 30.0%
! CTCATTTTCACAAAACTGAT+TGG + chr4.4:7138132-7138151 MS.gene030476:intron 30.0%
!! TTTGTTATTAGTTACTGACC+TGG - chr4.4:7138090-7138109 None:intergenic 30.0%
ATGTTTGCAAGTATGATCCT+TGG + chr4.4:7138058-7138077 MS.gene030476:CDS 35.0%
CAACTTGTAATGGCATTGTA+GGG + chr4.4:7138665-7138684 MS.gene030476:CDS 35.0%
GTTTGATTGGTATGTATAGG+AGG + chr4.4:7138514-7138533 MS.gene030476:intron 35.0%
TAGTAGTTTCCACATTGATG+AGG - chr4.4:7138768-7138787 None:intergenic 35.0%
TCAACTTGTAATGGCATTGT+AGG + chr4.4:7138664-7138683 MS.gene030476:CDS 35.0%
TGTAGGGCTAAGAAAAACTT+TGG + chr4.4:7138681-7138700 MS.gene030476:CDS 35.0%
TGTTTGCAAGTATGATCCTT+GGG + chr4.4:7138059-7138078 MS.gene030476:CDS 35.0%
TTGTGAAAATGAGTTAGACC+CGG - chr4.4:7138125-7138144 None:intergenic 35.0%
!! AATCAGTTCTAGACCCATTT+GGG - chr4.4:7138726-7138745 None:intergenic 35.0%
AACACAAGCTCTTCATCTGT+TGG - chr4.4:7137976-7137995 None:intergenic 40.0%
AACATTGACCTCAGGAATGA+TGG - chr4.4:7138043-7138062 None:intergenic 40.0%
ATGAAGGGAAATCCCCAAAT+GGG + chr4.4:7138710-7138729 MS.gene030476:CDS 40.0%
TACTTGCAAACATTGACCTC+AGG - chr4.4:7138051-7138070 None:intergenic 40.0%
TATGAAGGGAAATCCCCAAA+TGG + chr4.4:7138709-7138728 MS.gene030476:CDS 40.0%
TGAATATCGCCTCATCAATG+TGG + chr4.4:7138756-7138775 MS.gene030476:CDS 40.0%
TGTGAAAATGAGTTAGACCC+GGG - chr4.4:7138124-7138143 None:intergenic 40.0%
! AAGGTCTGGAATTCAAATCC+TGG - chr4.4:7138235-7138254 None:intergenic 40.0%
! CAAATGGGTCTAGAACTGAT+TGG + chr4.4:7138725-7138744 MS.gene030476:CDS 40.0%
! TGAGCTTAGATCAGTTGGTA+GGG - chr4.4:7138276-7138295 None:intergenic 40.0%
!! ATCAGTTCTAGACCCATTTG+GGG - chr4.4:7138725-7138744 None:intergenic 40.0%
!! CAATCAGTTCTAGACCCATT+TGG - chr4.4:7138727-7138746 None:intergenic 40.0%
CAAGCTCTTCATCTGTTGGT+TGG - chr4.4:7137972-7137991 None:intergenic 45.0%
GAGGTTGTGATGAACAAGAG+AGG + chr4.4:7138533-7138552 MS.gene030476:CDS 45.0%
GTGAGCTTAGATCAGTTGGT+AGG - chr4.4:7138277-7138296 None:intergenic 45.0%
GTGGATATTGGAAGGCAACA+GGG + chr4.4:7138620-7138639 MS.gene030476:CDS 45.0%
GTTGGTTGGAAACGAAAACC+AGG - chr4.4:7137958-7137977 None:intergenic 45.0%
TATGATCCTTGGGATTTGCC+AGG + chr4.4:7138069-7138088 MS.gene030476:CDS 45.0%
TGTGGATATTGGAAGGCAAC+AGG + chr4.4:7138619-7138638 MS.gene030476:CDS 45.0%
CCAACTGATCTAAGCTCACG+AGG + chr4.4:7138278-7138297 MS.gene030476:intron 50.0%
CCTCGTGAGCTTAGATCAGT+TGG - chr4.4:7138281-7138300 None:intergenic 50.0%
GGTTGGAAACGAAAACCAGG+AGG - chr4.4:7137955-7137974 None:intergenic 50.0%
TACTGACCTGGCAAATCCCA+AGG - chr4.4:7138078-7138097 None:intergenic 50.0%
! ACCTCAGGAATGATGGAAGC+AGG - chr4.4:7138036-7138055 None:intergenic 50.0%
! AGGAATGATGGAAGCAGGCA+AGG - chr4.4:7138031-7138050 None:intergenic 50.0%
! GAATGATGGAAGCAGGCAAG+GGG - chr4.4:7138029-7138048 None:intergenic 50.0%
! GGAATGATGGAAGCAGGCAA+GGG - chr4.4:7138030-7138049 None:intergenic 50.0%
!!! GAGGCACTTTTTCAGCTCCA+AGG + chr4.4:7138552-7138571 MS.gene030476:CDS 50.0%
GCCTGCTTCCATCATTCCTG+AGG + chr4.4:7138032-7138051 MS.gene030476:CDS 55.0%
GGAGTGAGTAGATTGCCTCC+TGG + chr4.4:7137937-7137956 MS.gene030476:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 7137910 7138801 7137910 ID=MS.gene030476
chr4.4 mRNA 7137910 7138801 7137910 ID=MS.gene030476.t1;Parent=MS.gene030476
chr4.4 exon 7137910 7138090 7137910 ID=MS.gene030476.t1.exon1;Parent=MS.gene030476.t1
chr4.4 CDS 7137910 7138090 7137910 ID=cds.MS.gene030476.t1;Parent=MS.gene030476.t1
chr4.4 exon 7138533 7138801 7138533 ID=MS.gene030476.t1.exon2;Parent=MS.gene030476.t1
chr4.4 CDS 7138533 7138801 7138533 ID=cds.MS.gene030476.t1;Parent=MS.gene030476.t1
Gene Sequence

>MS.gene030476

ATGGATAAGCTGAATTTTATTAAAAATGGAGTGAGTAGATTGCCTCCTGGTTTTCGTTTCCAACCAACAGATGAAGAGCTTGTGTTTAATTATTTGAAATGTAAAATCTTCTCATGCCCCTTGCCTGCTTCCATCATTCCTGAGGTCAATGTTTGCAAGTATGATCCTTGGGATTTGCCAGGTCAGTAACTAATAACAAATTAATACTACACCCGGGTCTAACTCATTTTCACAAAACTGATTGGTAAGATGAAAAGTGTTACAATTTGTAAAAAAAAATCAACGTTGGAGTTGAACTTTTCTAAAAAAAAATTTATGGTAGCCAGGATTTGAATTCCAGACCTTGCATATATTATACATTGTCCCTACCAACTGATCTAAGCTCACGAGGACGAACTTTTTCTAATATATACACATAACATATTGTTCCTTTTTTACACTAAATAATTATATAAAATAAAAGAATCATGCATATATTCGTAATGTACAAAATTACTAACTTAAATCTTATTAACTAGTTTTGGTTTTCATTGTAATAATGCTATATATGATAGCCATTAACAAATAATAAAGGAGAAAAATATTAAGTGATTAACATTGTTTTGTTTGATTGGTATGTATAGGAGGTTGTGATGAACAAGAGAGGCACTTTTTCAGCTCCAAGGAAGCAAAGTATAGAAATAGTAATCGGATGAGTAGAACAACAAAATGTGGATATTGGAAGGCAACAGGGTCAGACAAAAAAATTTCATCTTCAACTTGTAATGGCATTGTAGGGCTAAGAAAAACTTTGGTTTTCTATGAAGGGAAATCCCCAAATGGGTCTAGAACTGATTGGATCTTGCATGAATATCGCCTCATCAATGTGGAAACTACTAACAACTCAACCCAG
Protein sequence

>MS.gene030476.t1

MDKLNFIKNGVSRLPPGFRFQPTDEELVFNYLKCKIFSCPLPASIIPEVNVCKYDPWDLPGGCDEQERHFFSSKEAKYRNSNRMSRTTKCGYWKATGSDKKISSSTCNGIVGLRKTLVFYEGKSPNGSRTDWILHEYRLINVETTNNSTQ