AlfalfaGEDB | MS.gene030480

M. sativa cultivar XinJiangDaYe / MS.gene030480

KEGG: K08819
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene030480.t1	XP_003630554.1	92.1	546	38	2	1	546	1	541	1.70E-279	971.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene030480.t1	Q9ZVM9	72.7	411	108	3	72	480	95	503	3.3e-175	616.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene030480.t1	G7LI33	92.1	546	38	2	1	546	1	541	1.2e-279	971.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene030480.t1	MTR_8g099770	96.703	546	13	2	1	546	1	541	1079
MS.gene030480.t1	MTR_3g098760	74.864	553	127	7	1	546	1	548	815
MS.gene030480.t1	MTR_4g118780	70.878	467	125	6	72	531	81	543	664
MS.gene030480.t1	MTR_2g020210	76.341	410	94	3	72	480	79	486	657
MS.gene030480.t1	MTR_7g114300	64.503	493	160	5	1	480	1	491	646
MS.gene030480.t1	MTR_1g081870	73.012	415	109	2	72	485	99	511	616
MS.gene030480.t1	MTR_7g114300	64.440	464	150	5	1	451	1	462	602
MS.gene030480.t1	MTR_2g085200	68.039	413	120	3	72	480	111	515	590
MS.gene030480.t1	MTR_4g078290	57.174	460	177	4	23	480	69	510	533
MS.gene030480.t1	MTR_2g090405	61.275	408	153	4	72	479	118	520	530

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene030480.t1	AT5G50860	71.399	479	127	3	68	544	87	557	696
MS.gene030480.t1	AT5G50860	78.238	386	82	1	68	451	87	472	638
MS.gene030480.t1	AT1G54610	72.749	411	108	3	72	480	95	503	634
MS.gene030480.t1	AT1G54610	72.749	411	108	3	72	480	95	503	634
MS.gene030480.t1	AT1G54610	72.749	411	108	3	72	480	95	503	634
MS.gene030480.t1	AT1G53050	60.632	475	168	5	72	538	111	574	590
MS.gene030480.t1	AT1G53050	60.632	475	168	5	72	538	111	574	590
MS.gene030480.t1	AT3G05050	61.864	472	169	4	72	534	115	584	569
MS.gene030480.t1	AT3G05050	61.864	472	169	4	72	534	115	584	569
MS.gene030480.t1	AT3G05050	61.864	472	169	4	72	534	115	584	569

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Find 152 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTAAAGACCTTGTTAC+GGG	0.432800	4.2:+7361061	MS.gene030480:CDS
AAAGTAATGAAGCAGATTCC+AGG	0.447985	4.2:+7363879	MS.gene030480:CDS
AAATCTGTTGGAAGTTATGC+AGG	0.478361	4.2:+7363836	MS.gene030480:CDS
AAATGAAAGACCCACAGTTG+AGG	0.580310	4.2:-7363939	None:intergenic
AACACTGCAAATGCTAACGG+AGG	0.693710	4.2:+7360445	MS.gene030480:CDS
AACCTGCCGGTGCCGGAGCT+CGG	0.456660	4.2:+7360407	MS.gene030480:CDS
AAGTTTCCATGATGATATCC+TGG	0.510549	4.2:-7363897	None:intergenic
AATAAAGGAGCTGTTTCATT+TGG	0.305361	4.2:+7363761	MS.gene030480:CDS
AATATCATCAAGTCTTTACT+TGG	0.457418	4.2:+7361222	MS.gene030480:CDS
AATATTGCCGGGAAGTTCAC+CGG	0.527042	4.2:-7360518	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGATTGGGTATCTAAATC+AGG	-	chr4.2:7361364-7361383	None:intergenic	30.0%
AATGTGCACGTAGATAAAAA+CGG	-	chr4.2:7363244-7363263	None:intergenic	30.0%
ACCTAAGGAAACAAAATGAT+TGG	-	chr4.2:7361378-7361397	None:intergenic	30.0%
AGGGATTCTATATTTAGGAA+AGG	+	chr4.2:7360935-7360954	MS.gene030480:intron	30.0%
ATTAAAGGTAATGAAGAAGG+TGG	-	chr4.2:7362941-7362960	None:intergenic	30.0%
ATTATCTAGGTACAAGACAT+TGG	-	chr4.2:7363593-7363612	None:intergenic	30.0%
ATTGTCAAGACTTTCACTTA+AGG	-	chr4.2:7362321-7362340	None:intergenic	30.0%
CCAATTAAAGGTAATGAAGA+AGG	-	chr4.2:7362944-7362963	None:intergenic	30.0%
CCTAAGGAAACAAAATGATT+GGG	-	chr4.2:7361377-7361396	None:intergenic	30.0%
CCTTCTTCATTACCTTTAAT+TGG	+	chr4.2:7362941-7362960	MS.gene030480:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	7360388	7364039	7360388	ID=MS.gene030480
chr4.2	mRNA	7360388	7364039	7360388	ID=MS.gene030480.t1;Parent=MS.gene030480
chr4.2	exon	7360388	7360687	7360388	ID=MS.gene030480.t1.exon1;Parent=MS.gene030480.t1
chr4.2	CDS	7360388	7360687	7360388	ID=cds.MS.gene030480.t1;Parent=MS.gene030480.t1
chr4.2	exon	7361031	7361315	7361031	ID=MS.gene030480.t1.exon2;Parent=MS.gene030480.t1
chr4.2	CDS	7361031	7361315	7361031	ID=cds.MS.gene030480.t1;Parent=MS.gene030480.t1
chr4.2	exon	7361980	7362297	7361980	ID=MS.gene030480.t1.exon3;Parent=MS.gene030480.t1
chr4.2	CDS	7361980	7362297	7361980	ID=cds.MS.gene030480.t1;Parent=MS.gene030480.t1
chr4.2	exon	7362797	7363024	7362797	ID=MS.gene030480.t1.exon4;Parent=MS.gene030480.t1
chr4.2	CDS	7362797	7363024	7362797	ID=cds.MS.gene030480.t1;Parent=MS.gene030480.t1
chr4.2	exon	7363102	7363202	7363102	ID=MS.gene030480.t1.exon5;Parent=MS.gene030480.t1
chr4.2	CDS	7363102	7363202	7363102	ID=cds.MS.gene030480.t1;Parent=MS.gene030480.t1
chr4.2	exon	7363291	7363411	7363291	ID=MS.gene030480.t1.exon6;Parent=MS.gene030480.t1
chr4.2	CDS	7363291	7363411	7363291	ID=cds.MS.gene030480.t1;Parent=MS.gene030480.t1
chr4.2	exon	7363662	7363946	7363662	ID=MS.gene030480.t1.exon7;Parent=MS.gene030480.t1
chr4.2	CDS	7363662	7363946	7363662	ID=cds.MS.gene030480.t1;Parent=MS.gene030480.t1
chr4.2	exon	7364019	7364039	7364019	ID=MS.gene030480.t1.exon8;Parent=MS.gene030480.t1
chr4.2	CDS	7364019	7364039	7364019	ID=cds.MS.gene030480.t1;Parent=MS.gene030480.t1

Gene Sequence

>MS.gene030480

ATGGGTTGCGCACTCGGAAAACCTGCCGGTGCCGGAGCTCGGCATCGTCGCCGAGATAACACTGCAAATGCTAACGGAGGTAATAATGCTGTTGAAGTTCGGGAGAAGCAGGAGGCTGAGGCTCCTACCGCCGGTGAACTTCCCGGCAATATTCCGGCACCGGTGAGCCTGCTGCTACCTCGACTTAATTCATTGGGACCAACTCAACAGAGTTGGCCGCCATGGTTGATGGAAGTTGCCGGTGATGCAATCCGAGATTGGACTCCTCGCCGCGCCAACACGTTCGAGAAGCTTGCTAAGGTAAGGTGCTTTGAACCTTTGTAGCACGGATACTTCTGATTGAAGATATGTTCGGTGTCTGACACCAACACATGTGATTATACATTTAATTTTGTCATTTTCTTAAATACTATTACGGGTATTAACGTGTCGGTATCGTGTTCAGTGTCATTGTTTCGTAGATTTGAACTTCAAAGCTTGTCAAAGAAAAATTAATGCATTTGAAAATTTGTAAGGCGTTTTGTAAAGATGGACTAGAAAAAATCTAAGGGATTCTATATTTAGGAAAGGATGTAGTATTTTTGTTATGGATGTATGTTTGTTTTGTATAAAGGTGTTTTTGTTTGGGTTGTTGTTTTTACAGATTGGGAAAGGGACTTATAGCAACGTTTACAAAGCTAAAGACCTTGTTACGGGAAAGATAGTGGCATTGAAGAAAGTTAGAATTGATAATTTGGACGCTGAGAGTGTGAAGTTTATGGCAAGAGAGATTCTTGTTTTGAGGAAGCTTGATCACCCCAATGTTATAAAGCTTGAGGGTTTGGTTACTTCAAGAATATCATCAAGTCTTTACTTGGTATTTGAGTACATGGAACATGATCTTGCTGGTCTTATAGCTGGCCTTGGTGTCAAATTCTCTCTGCCTCAGGTTGCTCCACTATTTTGTTAAGATTTTATTTGCATCATCTATTGTCCTGATTTAGATACCCAATCATTTTGTTTCCTTAGGTGTGTGTGGATTATTTATTGACATAAGCATTTGTGAGATTGTTATGAAAACAACTTATGAGCATTTGTGAGATTGTTATGAAAACAACTTATGACATGTCTATAACATGTTTAGCTTATTTCTAAAAACTTTCCATGAAAGATTATGAAAACAGCATTTATGAAAATAATTTTACTTTATTTTATCTTTTGTTATATGAAGAGCTTATACATAAATACTTATATGATAAGCATTTATTATGTTCTAAGGGCTTAATTAAGCTATTTATCCAAACAAGGTTTACTATTTTCCATTGGTTTTGAGTTGATTCGAGCTTCCTGGGCCTCGTTGGATCACATTCATGCTAGATTCTATTCATATCTAGTTTTGATTTTGTATGATGATTTCATATTGTATTTTTGCCTCATGCACTTACTCTTTTCCTTTGTTATATTATATCTCTTCAGAAAATAAATTTAGTACTTAGTTGTATTCCAACTAATCTATGGGTGCATTGCAAATTATTAAGGGTAAAAATTTGTCAAATTTGACACTTGGAGATTTTTACATTTGGAGTTGTGTCTCAGCATATTGTTTATGACAGGTCAAATGTTATATGAAACAATTATTGTCTGGCCTTGAGCATTGCCATAGCCGAGGTGTATTGCACCGCGATATCAAGGGCTCCAATTTGCTTATTGACGACGAAGGAATACTTAAAATTGCAGATTTTGGACTCGCGACTTTCTATGATTCTAAGCAAAAGCATCCAATGACTAGTAGAGTCGTGACCCTTTGGTATCGTCCCCCCGAGCTTCTTCTTGGAGCTACATTCTATGGTGTTGGGGTTGATCTTTGGAGCGCTGGCTGCATTTTGGCAGAGCTTCTTGCCGGAAGACCAATCATGCCTGGAAGAACTGAGGTATTGATCTGTGTCTTGTTCCTTAAGTGAAAGTCTTGACAATGCATCAGCTTGCTTTTGGGGTCTGTTTGGATTGATTTATTTGAGTTTATCTACTGGTATAAGCACTTGAGAGATTGTTTGAGAGAGCTTATTGAAATAGCTTATGACACCATGTCCATAAGATGTTTTCAACATATTTCCATAAACTCGACTGGATAGCTTTTGAAAACATCTTATAGTTTATATCAGATGATATAAAACTATACGATAGCACTCCATTTTCCCAATCGGTAGTTTGGTTTTAGCTTTGATTTTATTTTATATTTTATTATATAAATAGCTTATAGATAAGCACTTACATGGAAAGTGTTTAATTAAGGTGTTTATTCAAACAAGGTCTAGTTCATTAGTTTATATTCCTGCTCTAAAGTGTGTGTGTGTGTGTGTACACGAGTGCATGCTAATTTTTTGGGTGGTATGTAAGTATGTAACTAATTTTTGGACTTTTTGGACCTAGGTTGAGCAACTGCACAAAATATTTAAGTTATGTGGCTCTCCATCTGAGGAATATTGGAAGAAATATAGATTGCCAAACGCTACTCTTTTTAAGCCACAACAACCTTATAAACGGCGCATCTCAGAAGCATTTGCTGTTTTTCCACCTTCTTCATTACCTTTAATTGGATCTCTTCTTGCAATAGATCCTGATGATCGCGGCACTACCTCGTCTGCTCTGATTAATGAGGTGAATGATTGCACTATGTTCGCCACCATGCATTTGAGATGTAACATATTTACATCACAGCTGTTTTCTATGTGCAGTTCTTTACCACTGAACCCTATGCTTGTGAACCATCGAGTTTACCAAAGTATCCTCCCAGTAAAGAATTGGATGTGAAGCTGAGAGACGAAGAAGCGAGAAGGTTCTTTTATTCTGTTGTTGTTCTTATTAAATTCTAGACCGTTTTTATCTACGTGCACATTAAAGCTTTTTTTTTTTATCATTCTCAGGCAAAGAGCTCTAAGTGGAAAATCGAATGCAGTTGATGGTGCCAGACAAAGTAGAGCACGTGAGCGCGGTTATTCCATTCCAGCCCCAGAAGCCAATGCAGAGATCCAAACAAACATAGATGTATGCAAGATGTTTTTCTTATGTTTGTTTACTCCCCTATACTTACCTGCCCCGCAATTCCTTATGTTGAGTACTTGAGTCTATAGAAACGAAAAAAATATATTTAACCCTATAATATATATTATATGCTACGACAGTTAATATATAAGAATACACATGGAAGTGGTTTAAATGACCCCCAATGTCTTGTACCTAGATAATTTCTACCTTAAGCAACCTTACATTGATGTGTTTTCTTACTGATTTTCAGAGATTGAGAGTTGTGACAAATGGAAATGGAAAAAGTAAAAGTGAGAAATTTCCACCTCCTCATGAAGATGGAGCTGTTGGATATCCAGGGGATGGATCAAATAAAGGAGCTGTTTCATTTGGAACAACTGAAAAAACTTCATTTAGTTCAATATTATCTAATTCAATACATTCTAAATCTGTTGGAAGTTATGCAGGCAGCTCTCATAAAAGGAGGAAAAGTAATGAAGCAGATTCCAGGATATCATCATGGAAACTTATGCGTTCTTCTTTCAAGCCCTCAACTGTGGGTCTTTCATTTAATTTATTATTTAGAAGCAGAAGATAATCTCTTTCTTTTTGGATTATAACATTCTAGAATGTGGAAAGCAATGAATGA

Protein sequence

>MS.gene030480.t1

MGCALGKPAGAGARHRRRDNTANANGGNNAVEVREKQEAEAPTAGELPGNIPAPVSLLLPRLNSLGPTQQSWPPWLMEVAGDAIRDWTPRRANTFEKLAKIGKGTYSNVYKAKDLVTGKIVALKKVRIDNLDAESVKFMAREILVLRKLDHPNVIKLEGLVTSRISSSLYLVFEYMEHDLAGLIAGLGVKFSLPQVKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDDEGILKIADFGLATFYDSKQKHPMTSRVVTLWYRPPELLLGATFYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYRLPNATLFKPQQPYKRRISEAFAVFPPSSLPLIGSLLAIDPDDRGTTSSALINEFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQRALSGKSNAVDGARQSRARERGYSIPAPEANAEIQTNIDRLRVVTNGNGKSKSEKFPPPHEDGAVGYPGDGSNKGAVSFGTTEKTSFSSILSNSIHSKSVGSYAGSSHKRRKSNEADSRISSWKLMRSSFKPSTNVESNE