AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030501

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030501.t1 MTR_8g100050 97.599 833 20 0 1 833 1 833 0.0 1693
MS.gene030501.t1 MTR_8g100050 97.343 715 19 0 1 715 1 715 0.0 1450
MS.gene030501.t1 MTR_2g005240 62.998 427 147 3 55 474 19 441 0.0 551
MS.gene030501.t1 MTR_2g005240 41.489 188 99 3 622 809 470 646 6.68e-35 142
MS.gene030501.t1 MTR_8g027440 65.607 346 114 4 56 400 26 367 4.30e-159 479
MS.gene030501.t1 MTR_8g027440 39.362 188 94 4 621 798 468 645 6.21e-27 117
MS.gene030501.t1 MTR_7g062540 60.836 383 138 8 46 423 3 378 4.65e-155 469
MS.gene030501.t1 MTR_7g062540 37.566 189 105 4 616 804 488 663 9.43e-31 129
MS.gene030501.t1 MTR_4g021580 62.895 380 121 7 59 430 19 386 1.13e-152 461
MS.gene030501.t1 MTR_4g021580 55.072 69 30 1 709 777 554 621 2.94e-17 86.7
MS.gene030501.t1 MTR_4g021580 62.895 380 121 7 59 430 19 386 1.20e-152 462
MS.gene030501.t1 MTR_4g021580 50.962 104 47 2 709 809 554 656 3.23e-26 115
MS.gene030501.t1 MTR_4g060460 38.925 614 327 10 57 634 52 653 7.00e-136 423
MS.gene030501.t1 MTR_4g060460 48.649 111 55 1 705 815 658 766 3.79e-29 125
MS.gene030501.t1 MTR_2g093740 46.444 478 235 7 7 469 1 472 3.74e-135 418
MS.gene030501.t1 MTR_4g060460 38.789 611 327 10 57 634 52 648 8.32e-135 420
MS.gene030501.t1 MTR_4g060460 48.649 111 55 1 705 815 653 761 4.09e-29 125
MS.gene030501.t1 MTR_2g093740 46.444 478 235 7 7 469 1 472 2.38e-134 418
MS.gene030501.t1 MTR_2g093740 51.351 74 36 0 705 778 677 750 2.09e-19 94.0
MS.gene030501.t1 MTR_2g093740 46.444 478 235 7 7 469 1 472 5.05e-134 419
MS.gene030501.t1 MTR_2g093740 50.000 104 52 0 705 808 677 780 6.61e-30 127
MS.gene030501.t1 MTR_2g093740 45.010 491 236 8 7 469 1 485 2.87e-131 409
MS.gene030501.t1 MTR_2g093740 45.214 491 235 8 7 469 1 485 1.17e-130 409
MS.gene030501.t1 MTR_2g093740 51.351 74 36 0 705 778 690 763 2.27e-19 94.0
MS.gene030501.t1 MTR_2g093740 45.214 491 235 8 7 469 1 485 2.33e-130 409
MS.gene030501.t1 MTR_2g093740 50.000 104 52 0 705 808 690 793 7.30e-30 127
MS.gene030501.t1 MTR_2g018690 53.825 366 165 4 55 417 19 383 1.24e-122 392
MS.gene030501.t1 MTR_2g018690 46.667 90 46 2 710 798 775 863 7.62e-17 85.9
MS.gene030501.t1 MTR_4g088210 46.905 420 183 5 52 450 31 431 3.07e-122 385
MS.gene030501.t1 MTR_4g088210 46.905 420 183 5 52 450 31 431 5.56e-122 384
MS.gene030501.t1 MTR_2g014770 47.666 407 193 3 53 450 47 442 7.48e-121 378
MS.gene030501.t1 MTR_2g014770 47.666 407 193 3 53 450 47 442 5.59e-120 378
MS.gene030501.t1 MTR_8g079492 52.055 365 172 3 55 417 19 382 4.42e-119 382
MS.gene030501.t1 MTR_8g079492 43.434 99 54 2 710 807 782 879 1.93e-16 84.7
MS.gene030501.t1 MTR_8g079492 52.055 365 172 3 55 417 19 382 4.60e-119 382
MS.gene030501.t1 MTR_8g079492 43.434 99 54 2 710 807 781 878 1.93e-16 84.7
MS.gene030501.t1 MTR_5g076270 52.355 361 167 3 55 410 20 380 6.28e-119 380
MS.gene030501.t1 MTR_5g076270 44.828 87 46 2 713 798 718 803 2.33e-15 80.9
MS.gene030501.t1 MTR_3g064050 52.186 366 164 5 53 410 20 382 2.74e-118 379
MS.gene030501.t1 MTR_3g064050 47.126 87 44 2 713 798 726 811 7.97e-16 82.4
MS.gene030501.t1 MTR_4g124900 52.603 365 171 2 47 410 11 374 2.79e-114 374
MS.gene030501.t1 MTR_4g124900 42.105 133 72 4 705 833 988 1119 2.07e-21 100
MS.gene030501.t1 MTR_4g124900 52.603 365 171 2 47 410 11 374 2.87e-114 374
MS.gene030501.t1 MTR_4g124900 42.105 133 72 4 705 833 965 1096 2.12e-21 100
MS.gene030501.t1 MTR_1g024025 53.736 348 140 5 55 391 39 376 8.05e-111 367
MS.gene030501.t1 MTR_1g024025 42.857 91 50 2 710 799 754 843 6.57e-15 79.7
MS.gene030501.t1 MTR_1g024025 46.914 81 41 1 252 332 862 940 5.05e-12 70.5
MS.gene030501.t1 MTR_2g043250 52.991 351 163 2 47 396 11 360 1.98e-110 364
MS.gene030501.t1 MTR_2g043250 37.313 134 78 4 705 833 981 1113 1.27e-17 88.6
MS.gene030501.t1 MTR_8g101360 51.289 349 160 4 53 395 25 369 2.14e-104 347
MS.gene030501.t1 MTR_8g101360 43.860 114 59 4 710 819 984 1096 2.94e-19 94.0
MS.gene030501.t1 MTR_2g093740 49.387 326 160 3 145 469 21 342 2.42e-100 325
MS.gene030501.t1 MTR_2g093740 51.351 74 36 0 705 778 547 620 1.64e-19 94.0
MS.gene030501.t1 MTR_2g093740 49.538 325 159 3 146 469 22 342 6.16e-100 325
MS.gene030501.t1 MTR_2g093740 50.000 104 52 0 705 808 547 650 3.89e-30 127
MS.gene030501.t1 MTR_2g093740 48.485 330 152 4 154 469 30 355 2.05e-96 315
MS.gene030501.t1 MTR_2g093740 51.351 74 36 0 705 778 560 633 1.87e-19 94.0
MS.gene030501.t1 MTR_2g093740 48.485 330 152 4 154 469 30 355 4.44e-96 315
MS.gene030501.t1 MTR_2g093740 50.000 104 52 0 705 808 560 663 5.10e-30 127
MS.gene030501.t1 MTR_8g079492 52.492 301 140 3 119 417 1 300 6.71e-94 313
MS.gene030501.t1 MTR_8g079492 43.434 99 54 2 710 807 699 796 1.72e-16 84.7
MS.gene030501.t1 MTR_8g446900 46.326 313 157 6 101 409 3 308 2.49e-85 277
MS.gene030501.t1 MTR_2g094570 39.409 406 186 8 50 408 2 394 1.48e-78 267
MS.gene030501.t1 MTR_2g094570 39.604 404 184 8 52 408 4 394 1.90e-78 268
MS.gene030501.t1 MTR_2g094570 39.604 404 184 8 52 408 60 450 5.17e-78 268
MS.gene030501.t1 MTR_1g094960 37.956 411 195 9 47 411 7 403 3.05e-74 254
MS.gene030501.t1 MTR_4g058930 39.000 400 184 9 59 409 12 400 3.54e-74 256
MS.gene030501.t1 MTR_4g058930 38.750 400 185 8 59 409 12 400 4.96e-74 256
MS.gene030501.t1 MTR_1g064430 35.252 417 220 6 38 409 19 430 4.92e-72 250
MS.gene030501.t1 MTR_1g064430 35.252 417 220 6 38 409 6 417 5.62e-72 250
MS.gene030501.t1 MTR_7g101280 36.070 402 198 10 59 408 31 425 3.06e-63 225
MS.gene030501.t1 MTR_0041s0110 36.070 402 198 10 59 408 31 425 3.06e-63 225
MS.gene030501.t1 MTR_3g073420 33.953 430 232 7 54 449 14 425 8.82e-62 219
MS.gene030501.t1 MTR_5g040880 32.374 417 241 9 58 459 10 400 2.14e-57 206
MS.gene030501.t1 MTR_5g061220 32.637 383 213 9 59 411 19 386 1.93e-55 200
MS.gene030501.t1 MTR_7g101275 38.585 311 172 8 68 370 1 300 2.90e-54 193
MS.gene030501.t1 MTR_1g058210 32.303 356 234 4 59 413 12 361 6.31e-53 191
MS.gene030501.t1 MTR_2g024430 35.000 360 209 10 59 412 20 360 1.33e-51 189
MS.gene030501.t1 MTR_5g082140 33.978 362 214 9 58 411 11 355 4.07e-50 183
MS.gene030501.t1 MTR_2g006270 34.454 357 217 7 59 412 13 355 2.14e-49 181
MS.gene030501.t1 MTR_0041s0120 34.483 319 186 8 68 370 1 312 7.24e-45 167
MS.gene030501.t1 MTR_5g040740 32.219 329 183 9 59 372 12 315 3.71e-44 165
MS.gene030501.t1 MTR_2g006380 30.328 366 219 11 56 412 17 355 3.72e-43 163
MS.gene030501.t1 MTR_5g060780 29.942 344 210 10 59 391 12 335 4.01e-38 147
MS.gene030501.t1 MTR_5g062970 38.776 196 109 3 59 250 38 226 3.79e-37 140
MS.gene030501.t1 MTR_5g460920 29.651 344 211 10 59 391 12 335 1.26e-36 143
MS.gene030501.t1 MTR_5g061890 29.155 343 214 8 59 391 12 335 6.61e-36 140
MS.gene030501.t1 MTR_5g060630 28.351 388 223 12 59 405 12 385 9.28e-35 140
MS.gene030501.t1 MTR_5g460740 28.351 388 223 12 59 405 12 385 9.28e-35 140
MS.gene030501.t1 MTR_3g064050 48.276 145 71 2 270 410 1 145 2.67e-33 137
MS.gene030501.t1 MTR_3g064050 47.126 87 44 2 713 798 489 574 4.96e-16 82.8
MS.gene030501.t1 MTR_5g074840 38.554 166 70 4 162 326 27 161 3.80e-23 97.4
MS.gene030501.t1 MTR_5g032260 33.533 167 100 4 270 435 37 193 3.39e-17 85.1
MS.gene030501.t1 MTR_2g100780 30.769 117 58 2 713 806 150 266 3.75e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030501.t1 AT5G62000 64.106 872 242 13 13 831 1 854 0.0 1081
MS.gene030501.t1 AT5G62000 64.106 872 242 13 13 831 1 854 0.0 1081
MS.gene030501.t1 AT5G62000 64.106 872 242 13 13 831 1 854 0.0 1081
MS.gene030501.t1 AT5G62000 64.106 872 242 13 13 831 1 854 0.0 1081
MS.gene030501.t1 AT5G62000 64.434 866 235 14 13 825 1 846 0.0 1075
MS.gene030501.t1 AT1G59750 68.767 365 111 2 55 417 18 381 2.54e-179 531
MS.gene030501.t1 AT1G59750 36.667 210 120 4 591 800 431 627 3.08e-32 134
MS.gene030501.t1 AT1G59750 66.929 381 123 2 39 417 2 381 2.89e-179 531
MS.gene030501.t1 AT1G59750 36.667 210 120 4 591 800 433 629 2.72e-32 134
MS.gene030501.t1 AT1G59750 66.929 381 123 2 39 417 2 381 3.95e-179 531
MS.gene030501.t1 AT1G59750 36.667 210 120 4 591 800 436 632 2.80e-32 134
MS.gene030501.t1 AT1G59750 66.929 381 123 2 39 417 2 381 3.95e-179 531
MS.gene030501.t1 AT1G59750 36.667 210 120 4 591 800 436 632 2.80e-32 134
MS.gene030501.t1 AT3G61830 62.205 381 135 6 37 415 6 379 2.88e-159 478
MS.gene030501.t1 AT3G61830 50.000 118 56 2 708 825 487 601 5.37e-29 123
MS.gene030501.t1 AT2G46530 62.912 364 129 5 41 403 3 361 1.66e-158 475
MS.gene030501.t1 AT2G46530 38.249 217 90 6 590 803 407 582 2.50e-29 124
MS.gene030501.t1 AT2G46530 65.043 349 116 5 56 403 39 382 8.09e-158 474
MS.gene030501.t1 AT2G46530 38.249 217 90 6 590 803 428 603 3.70e-29 124
MS.gene030501.t1 AT4G23980 59.948 382 149 3 56 436 9 387 5.63e-152 460
MS.gene030501.t1 AT4G23980 41.709 199 91 6 606 801 437 613 6.15e-32 133
MS.gene030501.t1 AT4G23980 60.686 379 138 4 56 426 9 384 1.22e-151 459
MS.gene030501.t1 AT4G23980 41.709 199 91 6 606 801 435 611 6.07e-32 133
MS.gene030501.t1 AT3G61830 62.349 332 119 5 86 415 1 328 5.26e-138 421
MS.gene030501.t1 AT3G61830 50.000 118 56 2 708 825 436 550 3.53e-29 123
MS.gene030501.t1 AT5G60450 49.510 408 191 4 54 451 36 438 5.32e-133 415
MS.gene030501.t1 AT5G60450 53.191 94 44 0 703 796 634 727 5.84e-28 121
MS.gene030501.t1 AT5G60450 49.754 406 189 4 56 451 62 462 2.75e-132 414
MS.gene030501.t1 AT5G60450 53.191 94 44 0 703 796 658 751 6.58e-28 121
MS.gene030501.t1 AT1G35540 52.023 346 147 4 52 391 20 352 1.86e-123 385
MS.gene030501.t1 AT1G35540 50.000 102 49 2 705 805 505 605 2.52e-25 112
MS.gene030501.t1 AT5G37020 52.116 378 171 4 49 420 12 385 2.29e-121 384
MS.gene030501.t1 AT5G37020 43.243 74 40 2 706 778 701 773 1.34e-11 68.9
MS.gene030501.t1 AT1G34310 50.135 371 162 6 36 400 6 359 5.64e-121 378
MS.gene030501.t1 AT1G34310 50.588 85 41 1 705 789 506 589 7.17e-22 101
MS.gene030501.t1 AT5G37020 52.116 378 171 4 49 420 12 385 7.02e-121 384
MS.gene030501.t1 AT5G37020 40.426 94 54 2 706 798 701 793 8.86e-15 79.3
MS.gene030501.t1 AT1G35240 49.863 365 172 5 36 400 6 359 8.47e-121 377
MS.gene030501.t1 AT1G35240 52.174 92 43 1 705 796 492 582 5.93e-25 110
MS.gene030501.t1 AT1G30330 53.825 366 165 4 55 417 19 383 2.04e-120 386
MS.gene030501.t1 AT1G30330 33.898 177 103 6 624 798 718 882 1.74e-16 84.7
MS.gene030501.t1 AT1G30330 53.825 366 165 4 55 417 21 385 2.11e-120 386
MS.gene030501.t1 AT1G30330 33.898 177 103 6 624 798 720 884 1.71e-16 84.7
MS.gene030501.t1 AT1G30330 53.825 366 165 4 55 417 21 385 2.11e-120 386
MS.gene030501.t1 AT1G30330 33.898 177 103 6 624 798 720 884 1.71e-16 84.7
MS.gene030501.t1 AT1G34410 46.305 406 199 6 36 441 6 392 2.49e-120 377
MS.gene030501.t1 AT1G34410 51.087 92 44 1 705 796 506 596 3.31e-24 108
MS.gene030501.t1 AT1G35520 49.326 371 166 6 37 400 4 359 4.58e-119 373
MS.gene030501.t1 AT1G35520 32.474 194 95 5 597 789 431 589 2.21e-22 102
MS.gene030501.t1 AT2G33860 46.814 408 197 4 52 450 47 443 2.63e-118 371
MS.gene030501.t1 AT1G34390 51.657 362 149 7 52 407 20 361 9.76e-117 367
MS.gene030501.t1 AT1G34390 47.727 88 45 1 705 792 504 590 5.00e-21 98.6
MS.gene030501.t1 AT1G34170 49.704 338 161 4 56 391 22 352 1.75e-115 360
MS.gene030501.t1 AT1G19850 53.936 343 140 4 59 391 43 377 3.01e-115 372
MS.gene030501.t1 AT1G19850 46.739 92 47 2 709 799 781 871 4.98e-18 89.7
MS.gene030501.t1 AT1G19850 53.936 343 140 4 59 391 54 388 3.81e-115 372
MS.gene030501.t1 AT1G19850 46.739 92 47 2 709 799 792 882 5.47e-18 89.7
MS.gene030501.t1 AT2G46530 65.748 254 83 3 150 403 25 274 2.71e-114 358
MS.gene030501.t1 AT2G46530 36.564 227 80 6 590 803 320 495 8.93e-30 125
MS.gene030501.t1 AT5G20730 52.893 363 166 3 59 420 24 382 2.55e-111 367
MS.gene030501.t1 AT5G20730 40.517 116 67 2 705 819 1032 1146 2.55e-19 94.4
MS.gene030501.t1 AT1G19220 52.342 363 168 3 59 420 23 381 7.37e-111 364
MS.gene030501.t1 AT1G19220 44.538 119 61 4 705 819 953 1070 8.54e-21 99.0
MS.gene030501.t1 AT5G20730 52.747 364 166 4 59 420 24 383 1.19e-109 362
MS.gene030501.t1 AT5G20730 44.792 96 51 2 705 799 1033 1127 5.56e-19 93.2
MS.gene030501.t1 AT5G20730 52.747 364 166 4 59 420 24 383 1.77e-109 362
MS.gene030501.t1 AT5G20730 40.517 116 67 2 705 819 1033 1147 2.87e-19 94.0
MS.gene030501.t1 AT1G34170 47.041 338 144 4 56 391 22 326 1.47e-100 320
MS.gene030501.t1 AT1G34170 47.041 338 144 4 56 391 22 326 1.99e-99 320
MS.gene030501.t1 AT1G34170 42.623 122 66 2 680 798 400 520 1.87e-22 102
MS.gene030501.t1 AT2G33860 49.827 289 141 1 162 450 2 286 8.32e-89 288
MS.gene030501.t1 AT5G37020 56.154 260 113 1 162 420 31 290 5.12e-87 291
MS.gene030501.t1 AT5G37020 40.426 94 54 2 706 798 606 698 8.00e-15 79.3
MS.gene030501.t1 AT2G28350 38.861 404 195 7 51 408 2 399 1.15e-78 268
MS.gene030501.t1 AT2G28350 38.861 404 195 7 51 408 2 399 1.44e-78 268
MS.gene030501.t1 AT4G30080 37.709 419 197 12 53 424 13 414 4.89e-75 258
MS.gene030501.t1 AT1G43950 50.000 226 105 4 37 261 4 222 3.11e-65 218
MS.gene030501.t1 AT1G77850 32.821 390 207 6 60 409 20 394 3.79e-53 195
MS.gene030501.t1 AT1G77850 32.821 390 207 6 60 409 20 394 3.81e-53 195
MS.gene030501.t1 AT5G25890 31.818 88 59 1 713 800 83 169 5.33e-12 65.5
MS.gene030501.t1 AT3G16500 30.709 127 67 3 686 795 131 253 3.76e-11 65.1
MS.gene030501.t1 AT3G16500 30.709 127 67 3 686 795 131 253 4.60e-11 64.7
MS.gene030501.t1 AT1G04550 28.462 130 79 3 696 812 109 237 7.35e-11 63.5

Find 200 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGATCAGCTATTTGAATT+TGG 0.210673 4.1:-6926059 MS.gene030501:CDS
ATCGACCTTGAGAGGAAATT+TGG 0.250119 4.1:-6927002 MS.gene030501:CDS
TTTAGATGTTGGCCATCTTT+TGG 0.254225 4.1:+6927379 None:intergenic
GGGATGCATTTATATTTCTA+AGG 0.282680 4.1:-6928055 MS.gene030501:intron
TTCCAATGCCCAGGCCTAAA+AGG 0.287769 4.1:-6927247 MS.gene030501:CDS
TTTCATGAAGAGTGAATGTT+TGG 0.299494 4.1:-6929600 None:intergenic
AAAGATGGCCAACATCTAAA+TGG 0.327483 4.1:-6927376 MS.gene030501:CDS
GACAGACCAGGTGGCATTAC+AGG 0.333510 4.1:+6926773 None:intergenic
AGTTCTAAGAGGCTGGTTGC+TGG 0.335910 4.1:-6928077 MS.gene030501:CDS
GGAGATGTCTCAAGGTTAGA+TGG 0.351091 4.1:-6927355 MS.gene030501:CDS
GGTGATTACTCAGTGCTTCA+TGG 0.355709 4.1:-6926656 MS.gene030501:CDS
TGATGAATTAACCGCTGAAT+TGG 0.360324 4.1:-6926078 MS.gene030501:CDS
AGCTTACAGTCACTGTCTTT+CGG 0.367081 4.1:+6926506 None:intergenic
TCGGACCTTCTGTCGGGATT+TGG 0.372145 4.1:-6926836 MS.gene030501:CDS
CGGGTAAGAACAGAAGAATC+TGG 0.391132 4.1:+6927197 None:intergenic
CTCATTCCCGTGCAGATCCT+TGG 0.394358 4.1:+6928280 None:intergenic
GAAGGTATGGTTCAGAGAAC+TGG 0.394883 4.1:-6926889 MS.gene030501:CDS
GCATGTTATGTTTGCCTTCA+CGG 0.404339 4.1:+6926807 None:intergenic
GCAAACACCTCATCAGTATC+TGG 0.405128 4.1:+6928738 None:intergenic
ATTGAAGGGTCCGGCATAGT+TGG 0.409564 4.1:+6926458 None:intergenic
CTTCTAGCAGAACCACTTTG+AGG 0.409668 4.1:+6926245 None:intergenic
CTGTGACGATTCTGTAGAAT+GGG 0.411759 4.1:+6926565 None:intergenic
CTTAGGACGGAGATCGTAAA+CGG 0.416054 4.1:+6928958 None:intergenic
CTCAGGACGAGGTATGTTAG+AGG 0.418614 4.1:+6927325 None:intergenic
TGATGAATGCCTTCCTCCAC+TGG 0.419523 4.1:-6928431 MS.gene030501:intron
GGTTCTTCATCGTTATCAAC+AGG 0.419682 4.1:-6929462 MS.gene030501:CDS
CTTTGAGAAATTGAAGGGTC+CGG 0.420099 4.1:+6926449 None:intergenic
AATATGAGATACAGTGCATT+TGG 0.421814 4.1:-6926677 MS.gene030501:CDS
CATGTTATGTTTGCCTTCAC+GGG 0.422513 4.1:+6926808 None:intergenic
GTTCTAAGAGGCTGGTTGCT+GGG 0.423320 4.1:-6928076 MS.gene030501:CDS
CTTGACCTTGCAAGACCCTC+TGG 0.423502 4.1:+6927029 None:intergenic
ACAACCACCTACACAGGAAT+TGG 0.425208 4.1:-6928306 MS.gene030501:CDS
AACACAAGTTCTCCTTCTCT+TGG 0.429337 4.1:+6929277 None:intergenic
GACAGTGACTGTAAGCTATT+CGG 0.430523 4.1:-6926500 MS.gene030501:CDS
ATGACCCGACAAAGGATCTT+AGG 0.431740 4.1:+6928941 None:intergenic
CGGTTTAAAATGAGGTTTGA+GGG 0.432278 4.1:-6927587 MS.gene030501:CDS
CTGCACTTTACAGAGAACTA+TGG 0.437647 4.1:-6929330 MS.gene030501:CDS
AAGGCTGGAACCAACGTATT+CGG 0.439474 4.1:-6926855 MS.gene030501:CDS
TTATTTAAGGTTCACAAGAA+AGG 0.439534 4.1:-6926146 MS.gene030501:intron
ACGTATTCGGACCTTCTGTC+GGG 0.452204 4.1:-6926842 MS.gene030501:CDS
TTGAAGGGTCCGGCATAGTT+GGG 0.454051 4.1:+6926459 None:intergenic
TGAAATCGCGGCGGAGGAGC+AGG 0.455495 4.1:+6928532 None:intergenic
TCGGTGTTCTTGCGACTGCT+TGG 0.455889 4.1:-6927854 MS.gene030501:CDS
TATTTAAGGTTCACAAGAAA+GGG 0.456345 4.1:-6926145 MS.gene030501:intron
GCAGGGTAATGTTCCATCTT+CGG 0.458519 4.1:-6927901 MS.gene030501:CDS
GGAAATTCTGTCAACGGAAA+AGG 0.460893 4.1:-6929522 MS.gene030501:CDS
TCCACAAGGACATATTGAAC+AGG 0.462225 4.1:-6929248 MS.gene030501:intron
GATCATTCATACCTTTGCTC+AGG 0.462655 4.1:+6927554 None:intergenic
TCCGTCCTAAGATCCTTTGT+CGG 0.466899 4.1:-6928946 MS.gene030501:CDS
GTTTCTACTTCAAGAAGGTA+TGG 0.468821 4.1:-6926902 MS.gene030501:CDS
GGGAGCTTCGAGTTGGTGTC+AGG 0.469625 4.1:-6927938 MS.gene030501:CDS
TTCCAAGGGGAAACTCTCTC+AGG 0.476366 4.1:+6927308 None:intergenic
TTCAGCCAAATTTCCTCTCA+AGG 0.477911 4.1:+6926997 None:intergenic
AATGTTTGGGATGAGAGATC+TGG 0.480947 4.1:-6929586 MS.gene030501:CDS
TTCTAAGAGGCTGGTTGCTG+GGG 0.482649 4.1:-6928075 MS.gene030501:CDS
GCATGCGTGTGCTGGTCCTT+TGG 0.485332 4.1:-6929308 MS.gene030501:CDS
TTAGGCCTGGGCATTGGAAG+AGG 0.486254 4.1:+6927251 None:intergenic
CACAAGAAAGGGATTGCGCT+TGG 0.489727 4.1:-6926134 MS.gene030501:CDS
ATCTCATATTACCTTGAGCT+TGG 0.492191 4.1:+6926690 None:intergenic
AGACATCTCCATTTAGATGT+TGG 0.493538 4.1:+6927368 None:intergenic
TCTGTGACGATTCTGTAGAA+TGG 0.496331 4.1:+6926564 None:intergenic
CGTGGTCTTCACTGATAATG+AGG 0.499290 4.1:-6926003 MS.gene030501:CDS
TGAACTAATATCTCCACAAA+AGG 0.500571 4.1:-6926033 MS.gene030501:CDS
AACGTATTCGGACCTTCTGT+CGG 0.500644 4.1:-6926843 MS.gene030501:CDS
TAATATCTCCACAAAAGGAT+TGG 0.501274 4.1:-6926028 MS.gene030501:CDS
AGGTTTACAGGTACCATTGT+TGG 0.502878 4.1:-6927419 MS.gene030501:CDS
GACATTTGCTGCAGAGTGGT+TGG 0.502895 4.1:-6928112 MS.gene030501:CDS
TAGGCATGCGGTTTAAAATG+AGG 0.504222 4.1:-6927595 MS.gene030501:CDS
TTCTTGCACTCTAATATGAA+AGG 0.507078 4.1:-6926743 MS.gene030501:CDS
GATCAGCTATTTGAATTTGG+AGG 0.508832 4.1:-6926056 MS.gene030501:CDS
ATCATCAGAAGTATCTATGA+AGG 0.509774 4.1:-6929544 MS.gene030501:CDS
AATCGCGGCGGAGGAGCAGG+TGG 0.515442 4.1:+6928535 None:intergenic
AACATAACATGCTTACTCAA+TGG 0.515530 4.1:-6926796 MS.gene030501:CDS
GGAAACCACTAGTGGGCAAA+GGG 0.516386 4.1:+6927050 None:intergenic
TCGTATTGAGTTGGTGGTGG+TGG 0.520513 4.1:+6926593 None:intergenic
GCTGTTGGAGATGCTCAAAA+TGG 0.520529 4.1:-6929483 MS.gene030501:CDS
CTGGATGTCAATGTCAAGGC+TGG 0.520967 4.1:-6926870 MS.gene030501:CDS
CCGTCCTAAGATCCTTTGTC+GGG 0.521751 4.1:-6928945 MS.gene030501:CDS
TTCTTGTGCATCTCCGCCAT+CGG 0.523242 4.1:+6925735 None:intergenic
ACATTTCTTTGAGAAATTGA+AGG 0.523337 4.1:+6926443 None:intergenic
CAGGCGTGCAATGAGACAGC+AGG 0.524850 4.1:-6927919 MS.gene030501:CDS
TCATCGTTATCAACAGGAAG+AGG 0.527310 4.1:-6929456 MS.gene030501:intron
GAGGGTGACATGATGCTTGT+TGG 0.529132 4.1:-6925984 MS.gene030501:CDS
GACTCCATGTATTGATCATA+CGG 0.529240 4.1:+6927638 None:intergenic
TGCAACTGATGAAGAAAAGA+TGG 0.529963 4.1:-6926930 MS.gene030501:CDS
CTCTGGTACCAAAGTCACTT+GGG 0.530252 4.1:+6928716 None:intergenic
TGCTTGTTGGCGACGATCCA+TGG 0.532108 4.1:-6925971 MS.gene030501:CDS
AAGTTCTCATGATACCTTCA+CGG 0.533026 4.1:+6927177 None:intergenic
CTCTCGTATTGAGTTGGTGG+TGG 0.533181 4.1:+6926590 None:intergenic
GGACTCTCGTATTGAGTTGG+TGG 0.533575 4.1:+6926587 None:intergenic
GGGTAAGAACAGAAGAATCT+GGG 0.533836 4.1:+6927198 None:intergenic
TCTCAGTAGCCCAACTATGC+CGG 0.534348 4.1:-6926468 MS.gene030501:CDS
GAACTATGGCATGCGTGTGC+TGG 0.534486 4.1:-6929316 MS.gene030501:CDS
ACTATGACTAGTTTATCTGC+TGG 0.535958 4.1:+6926329 None:intergenic
TGAACATGAAATCGCGGCGG+AGG 0.536929 4.1:+6928526 None:intergenic
GTCCTGAGAGAGTTTCCCCT+TGG 0.537173 4.1:-6927310 MS.gene030501:CDS
TATTGAGTTGGTGGTGGTGG+TGG 0.537370 4.1:+6926596 None:intergenic
TAAATCCTCTTCCAATGCCC+AGG 0.538984 4.1:-6927256 MS.gene030501:CDS
TTGGCCACCAATTCCTGTGT+AGG 0.539634 4.1:+6928299 None:intergenic
GCCCACTAGTGGTTTCCAGA+GGG 0.539744 4.1:-6927044 MS.gene030501:CDS
TTGGTAACGGTTCCAAGAGA+AGG 0.539960 4.1:-6929289 MS.gene030501:CDS
TCTTCTGTTCTTACCCGTGA+AGG 0.542731 4.1:-6927191 MS.gene030501:intron
AGGGATTGCGCTTGGTAGGT+CGG 0.543005 4.1:-6926126 MS.gene030501:CDS
GGTGTTTGCCCAAGTGACTT+TGG 0.543173 4.1:-6928724 MS.gene030501:CDS
GGTCATCAACGTTATGCTAA+AGG 0.544071 4.1:-6928924 MS.gene030501:intron
TCGCGGCGGAGGAGCAGGTG+GGG 0.544587 4.1:+6928537 None:intergenic
ATGGACCCTTTGCCCACTAG+TGG 0.547335 4.1:-6927055 MS.gene030501:CDS
AGAAAGGGATTGCGCTTGGT+AGG 0.549488 4.1:-6926130 MS.gene030501:CDS
GCTCTGGTACCAAAGTCACT+TGG 0.550915 4.1:+6928715 None:intergenic
TGGCTAGAGATAACCGAAGA+TGG 0.550920 4.1:+6927888 None:intergenic
ACCACCTACACAGGAATTGG+TGG 0.550997 4.1:-6928303 MS.gene030501:CDS
TACGGAACAATAAACTCCGC+TGG 0.551013 4.1:+6927656 None:intergenic
CATTTCTTTGAGAAATTGAA+GGG 0.551673 4.1:+6926444 None:intergenic
TTAGGACGGAGATCGTAAAC+GGG 0.552349 4.1:+6928959 None:intergenic
GCATCTGATACTAGTACTCA+TGG 0.552448 4.1:-6928481 MS.gene030501:CDS
GCGGTTTAAAATGAGGTTTG+AGG 0.557240 4.1:-6927588 MS.gene030501:CDS
AATGGTGATACTTACTGCCA+TGG 0.558365 4.1:+6925954 None:intergenic
AGAGCTGGAGGAGCAAGAGC+AGG 0.558684 4.1:+6927278 None:intergenic
TTCATGAAGAGTGAATGTTT+GGG 0.559177 4.1:-6929599 None:intergenic
TGCCCACTAGTGGTTTCCAG+AGG 0.560131 4.1:-6927045 MS.gene030501:CDS
AAGACTCTGACTCCAAAAGA+TGG 0.560145 4.1:-6927391 MS.gene030501:CDS
CAAGAATCATCGACCTTGAG+AGG 0.560987 4.1:-6927010 MS.gene030501:CDS
GAGATGTCTCAAGGTTAGAT+GGG 0.565236 4.1:-6927354 MS.gene030501:CDS
GCCACCAATTCCTGTGTAGG+TGG 0.565859 4.1:+6928302 None:intergenic
AATGAGGTTTGAGGGTGAAG+AGG 0.565915 4.1:-6927579 MS.gene030501:CDS
ATGCTGTTTCTACTTCAAGA+AGG 0.568887 4.1:-6926907 MS.gene030501:CDS
TACACAGGAATTGGTGGCCA+AGG 0.568988 4.1:-6928297 MS.gene030501:CDS
CAATGGCCTGTAATGCCACC+TGG 0.569696 4.1:-6926779 MS.gene030501:CDS
TGGAAACCACTAGTGGGCAA+AGG 0.571230 4.1:+6927049 None:intergenic
AGCATCGTCAAAAGTATGCA+TGG 0.573669 4.1:-6927074 MS.gene030501:CDS
ATGAAGGGAAATTCTGTCAA+CGG 0.574818 4.1:-6929528 MS.gene030501:CDS
ATCGCGGCGGAGGAGCAGGT+GGG 0.579243 4.1:+6928536 None:intergenic
AGGATCTGCACGGGAATGAG+TGG 0.579697 4.1:-6928277 MS.gene030501:CDS
GTGTGCTGGTCCTTTGGTAA+CGG 0.580243 4.1:-6929302 MS.gene030501:CDS
GAGAACAAACCAGTGGAGGA+AGG 0.582901 4.1:+6928422 None:intergenic
AGCAGAGAACAAACCAGTGG+AGG 0.583434 4.1:+6928418 None:intergenic
GAACACCGAGATGCATGCTA+TGG 0.587167 4.1:+6927868 None:intergenic
TGGGGACTCTCGTATTGAGT+TGG 0.588356 4.1:+6926584 None:intergenic
TGTTCCGTATGATCAATACA+TGG 0.589206 4.1:-6927642 MS.gene030501:CDS
GTCAAAACAACCACCTACAC+AGG 0.589887 4.1:-6928312 MS.gene030501:CDS
GGAAGAGGATTTAGAGCTGG+AGG 0.589947 4.1:+6927266 None:intergenic
GAAAGCAACGTTGATGCTGT+TGG 0.591943 4.1:-6929498 MS.gene030501:CDS
ATTGGAAGAGGATTTAGAGC+TGG 0.592035 4.1:+6927263 None:intergenic
ATCTAAATGGAGATGTCTCA+AGG 0.592490 4.1:-6927363 MS.gene030501:CDS
GACCCTCTGGAAACCACTAG+TGG 0.593537 4.1:+6927042 None:intergenic
TGGTGGCCAAGGATCTGCAC+GGG 0.594504 4.1:-6928286 MS.gene030501:CDS
AGTTCTCATGATACCTTCAC+GGG 0.595152 4.1:+6927178 None:intergenic
AAGAAATTTAGCGACAGACC+AGG 0.596232 4.1:+6926761 None:intergenic
ACAGAAGAATCTGGGGAGGA+CGG 0.596550 4.1:+6927206 None:intergenic
AGTTGAACATCTTTAACATG+AGG 0.596830 4.1:+6926272 None:intergenic
AGCTTCGACAAATCAAGCAT+CGG 0.597524 4.1:-6928993 MS.gene030501:CDS
ATGTTGTGATGAAATTTGCA+TGG 0.600259 4.1:+6926400 None:intergenic
TCACTGTTTATTACAAACCC+CGG 0.603096 4.1:-6927806 MS.gene030501:intron
AATGCAACTTACCAAGCTCA+AGG 0.604596 4.1:-6926701 MS.gene030501:CDS
CACTACCAAATCCCGACAGA+AGG 0.606193 4.1:+6926831 None:intergenic
AATATGAAAGGTTCTGCACA+AGG 0.609450 4.1:-6926731 MS.gene030501:CDS
TCTAGCCATAGCATGCATCT+CGG 0.612124 4.1:-6927873 MS.gene030501:CDS
GTGAAGAGGCTCCTGAGCAA+AGG 0.613106 4.1:-6927565 MS.gene030501:intron
GAGATTCAGAAAATGAGCCC+AGG 0.615563 4.1:-6925796 MS.gene030501:CDS
GAGAATGGGGAGCTTCGAGT+TGG 0.619668 4.1:-6927945 MS.gene030501:CDS
TCTCTTGGAACCGTTACCAA+AGG 0.623814 4.1:+6929292 None:intergenic
AGAACTGGATGTCAATGTCA+AGG 0.624645 4.1:-6926874 MS.gene030501:CDS
GGTTTCCAGAGGGTCTTGCA+AGG 0.624805 4.1:-6927034 MS.gene030501:CDS
TCATCAGAAGTATCTATGAA+GGG 0.626313 4.1:-6929543 MS.gene030501:CDS
GTTCAACTCAAACCTCAAAG+TGG 0.626662 4.1:-6926257 MS.gene030501:CDS
TAAAAGGCCTCGAGCTAACG+TGG 0.628300 4.1:-6927231 MS.gene030501:CDS
GGGGAAACTCTCTCAGGACG+AGG 0.628573 4.1:+6927314 None:intergenic
CTGCAGAGAAGTCCGTTGCG+TGG 0.628798 4.1:-6926958 MS.gene030501:CDS
ACCTGTTCAATATGTCCTTG+TGG 0.632841 4.1:+6929247 None:intergenic
AGTTGCAGGCGTCCACGCAA+CGG 0.636265 4.1:+6926946 None:intergenic
CTTCTGCAGGACAAGTCCAG+CGG 0.639810 4.1:-6927672 MS.gene030501:intron
GGATTTGGTAGTGCCCGTGA+AGG 0.642628 4.1:-6926821 MS.gene030501:CDS
CGTAGACATTTGCTGCAGAG+TGG 0.643093 4.1:-6928116 MS.gene030501:CDS
CCCGACAAAGGATCTTAGGA+CGG 0.643609 4.1:+6928945 None:intergenic
TGTTGTGATGAAATTTGCAT+GGG 0.646081 4.1:+6926401 None:intergenic
TTTGTAATAAACAGTGAACA+TGG 0.646135 4.1:+6927812 None:intergenic
GACGGCACCACGTTAGCTCG+AGG 0.646861 4.1:+6927224 None:intergenic
ACCCTCTGGAAACCACTAGT+GGG 0.647981 4.1:+6927043 None:intergenic
AATCATTCAGCTACCGATGG+CGG 0.649175 4.1:-6925748 MS.gene030501:CDS
TCCACAAAAGGATTGGCTCG+TGG 0.649190 4.1:-6926021 MS.gene030501:CDS
GAGAATCATTCAGCTACCGA+TGG 0.649809 4.1:-6925751 MS.gene030501:CDS
AGAGTCTTCAATGCCAACAA+TGG 0.650034 4.1:+6927406 None:intergenic
AACGAATGAACATGAAATCG+CGG 0.650113 4.1:+6928520 None:intergenic
GTGGTCTTCACTGATAATGA+GGG 0.652302 4.1:-6926002 MS.gene030501:CDS
CTCTGCAGCAAATGTCTACG+TGG 0.656550 4.1:+6928119 None:intergenic
AGGCGTGCAATGAGACAGCA+GGG 0.658437 4.1:-6927918 MS.gene030501:CDS
TCTGGAAGAAGATAGAAACA+TGG 0.661616 4.1:-6929568 MS.gene030501:CDS
ATAATTATACAATAGGCATG+CGG 0.665775 4.1:-6927607 MS.gene030501:CDS
TAACGTTGATGACCCGACAA+AGG 0.669433 4.1:+6928933 None:intergenic
CATAAAGTTGAAAATCCACA+CGG 0.673033 4.1:-6926632 MS.gene030501:CDS
TGTGACGATTCTGTAGAATG+GGG 0.680247 4.1:+6926566 None:intergenic
TTGGTGGCCAAGGATCTGCA+CGG 0.683444 4.1:-6928287 MS.gene030501:CDS
AAATAGCTGATCCAATTCAG+CGG 0.687488 4.1:+6926067 None:intergenic
GGCGGAGCCAGATACTGATG+AGG 0.688401 4.1:-6928745 MS.gene030501:CDS
AAGAACAGAAGAATCTGGGG+AGG 0.702793 4.1:+6927202 None:intergenic
AAATTTAGCGACAGACCAGG+TGG 0.706484 4.1:+6926764 None:intergenic
GACAGAAGGTCCGAATACGT+TGG 0.706729 4.1:+6926845 None:intergenic
GGTAAGAACAGAAGAATCTG+GGG 0.709548 4.1:+6927199 None:intergenic
TCTGATACTAGTACTCATGG+TGG 0.760741 4.1:-6928478 MS.gene030501:CDS
GAATGAACATGAAATCGCGG+CGG 0.768456 4.1:+6928523 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAAAAATAATTATACAAT+AGG - chr4.1:6927667-6927686 MS.gene030501:intron 10.0%
!!! TTTTGTATATTTTTTTTTGT+AGG - chr4.1:6926515-6926534 MS.gene030501:CDS 10.0%
!! ACACAAAAATAATACAAATA+AGG + chr4.1:6929407-6929426 None:intergenic 15.0%
!! CTATTAGATAAAGAATAAAA+AGG + chr4.1:6927814-6927833 None:intergenic 15.0%
!! GGAAAAAAATCAATTAAAAA+GGG + chr4.1:6929369-6929388 None:intergenic 15.0%
!! CAAAGAAACTAAAAGAAAAT+TGG + chr4.1:6926610-6926629 None:intergenic 20.0%
!! GGGAAAAAAATCAATTAAAA+AGG + chr4.1:6929370-6929389 None:intergenic 20.0%
!! TGAATACAAAATAAATCAAG+TGG + chr4.1:6927081-6927100 None:intergenic 20.0%
!! TTAACATAATTCAATGCATT+AGG - chr4.1:6926261-6926280 MS.gene030501:CDS 20.0%
!! TTATTCAAAAAAAGGAAAAG+AGG + chr4.1:6926391-6926410 None:intergenic 20.0%
!!! AACGAAATGATTCTTATTTA+AGG - chr4.1:6929122-6929141 MS.gene030501:intron 20.0%
!!! CAATTTTCTTTTAGTTTCTT+TGG - chr4.1:6926608-6926627 MS.gene030501:CDS 20.0%
!!! GGTTTCTTTTAACAAATTTA+TGG - chr4.1:6925888-6925907 MS.gene030501:intron 20.0%
!!! TCTAATAGTTTATTTTGATC+TGG - chr4.1:6927826-6927845 MS.gene030501:CDS 20.0%
!!! TGTATATTTTTTTTTGTAGG+CGG - chr4.1:6926518-6926537 MS.gene030501:CDS 20.0%
!!! TTAGTGTTTTTTGTTATTGT+TGG - chr4.1:6927280-6927299 MS.gene030501:CDS 20.0%
!!! TTTTAGAACAATTTTCATAC+CGG + chr4.1:6927497-6927516 None:intergenic 20.0%
! AAACCATGAAAGATAATTGT+CGG + chr4.1:6926082-6926101 None:intergenic 25.0%
! AAAGATAATTGTCGGAAAAT+AGG + chr4.1:6926074-6926093 None:intergenic 25.0%
! AACAATTAAACAACACAAGT+AGG + chr4.1:6926899-6926918 None:intergenic 25.0%
! ATAATTATACAATAGGCATG+CGG - chr4.1:6927674-6927693 MS.gene030501:intron 25.0%
! TGTTACTGTTAGAAAAAGAA+AGG + chr4.1:6926425-6926444 None:intergenic 25.0%
! TTGATCAACAAAAACAAATC+AGG + chr4.1:6928182-6928201 None:intergenic 25.0%
! TTTGTAATAAACAGTGAACA+TGG + chr4.1:6927472-6927491 None:intergenic 25.0%
!! ACATTTCTTTGAGAAATTGA+AGG + chr4.1:6928841-6928860 None:intergenic 25.0%
!! ATTTTCTGAATCTCTTCTTT+GGG + chr4.1:6929479-6929498 None:intergenic 25.0%
!! ATTTTTGTGTACTCAAAATC+AGG - chr4.1:6929417-6929436 MS.gene030501:intron 25.0%
!! CATGGTTTTCTTTGTAATTA+AGG - chr4.1:6925867-6925886 MS.gene030501:intron 25.0%
!! CATTTCTTTGAGAAATTGAA+GGG + chr4.1:6928840-6928859 None:intergenic 25.0%
!! CTAATTTAGAAATTTTCCAG+AGG - chr4.1:6927312-6927331 MS.gene030501:CDS 25.0%
!! TATTTAAGGTTCACAAGAAA+GGG - chr4.1:6929136-6929155 MS.gene030501:intron 25.0%
!! TCTCTAGTTTATTGTCAAAA+AGG + chr4.1:6929097-6929116 None:intergenic 25.0%
!! TTATTTAAGGTTCACAAGAA+AGG - chr4.1:6929135-6929154 MS.gene030501:intron 25.0%
!! TTTTGTATTTGTAGGTTTAC+AGG - chr4.1:6927850-6927869 MS.gene030501:CDS 25.0%
!! TTTTTGTGTACTCAAAATCA+GGG - chr4.1:6929418-6929437 MS.gene030501:intron 25.0%
!!! TTCTTTTAGTTTCTTTGGTT+TGG - chr4.1:6926613-6926632 MS.gene030501:CDS 25.0%
!!! TTTAGAACAATTTTCATACC+GGG + chr4.1:6927496-6927515 None:intergenic 25.0%
!!! TTTTGTGTTGTTTTTGATTG+TGG - chr4.1:6926675-6926694 MS.gene030501:CDS 25.0%
AACAACTTACAACGTTAACA+TGG - chr4.1:6925849-6925868 MS.gene030501:intron 30.0%
AACATAACATGCTTACTCAA+TGG - chr4.1:6928485-6928504 MS.gene030501:CDS 30.0%
AATAAGGTCATTCTTGAGAA+AGG + chr4.1:6929391-6929410 None:intergenic 30.0%
AATATGAGATACAGTGCATT+TGG - chr4.1:6928604-6928623 MS.gene030501:intron 30.0%
ACATAATTCAATGCATTAGG+TGG - chr4.1:6926264-6926283 MS.gene030501:CDS 30.0%
AGAAGAAATATGAGCAAGAA+CGG + chr4.1:6927594-6927613 None:intergenic 30.0%
AGTTGAACATCTTTAACATG+AGG + chr4.1:6929012-6929031 None:intergenic 30.0%
ATAAGGTCATTCTTGAGAAA+GGG + chr4.1:6929390-6929409 None:intergenic 30.0%
ATGTTGTGATGAAATTTGCA+TGG + chr4.1:6928884-6928903 None:intergenic 30.0%
CATAAAGTTGAAAATCCACA+CGG - chr4.1:6928649-6928668 MS.gene030501:intron 30.0%
GACAATTATCTTTCATGGTT+TGG - chr4.1:6926081-6926100 MS.gene030501:CDS 30.0%
GGTAATCAGAGAACTATAAA+TGG + chr4.1:6929348-6929367 None:intergenic 30.0%
TAATATCTCCACAAAAGGAT+TGG - chr4.1:6929253-6929272 MS.gene030501:CDS 30.0%
TGAACTAATATCTCCACAAA+AGG - chr4.1:6929248-6929267 MS.gene030501:intron 30.0%
TGTTGTGATGAAATTTGCAT+GGG + chr4.1:6928883-6928902 None:intergenic 30.0%
TTCCTTACAGTTGAAATTGA+TGG - chr4.1:6926921-6926940 MS.gene030501:CDS 30.0%
TTCTTGCACTCTAATATGAA+AGG - chr4.1:6928538-6928557 MS.gene030501:CDS 30.0%
TTGGATCAGCTATTTGAATT+TGG - chr4.1:6929222-6929241 MS.gene030501:intron 30.0%
TTTCCGACAATTATCTTTCA+TGG - chr4.1:6926076-6926095 MS.gene030501:CDS 30.0%
! CATTTTCTGAATCTCTTCTT+TGG + chr4.1:6929480-6929499 None:intergenic 30.0%
! GGGATGCATTTATATTTCTA+AGG - chr4.1:6927226-6927245 MS.gene030501:CDS 30.0%
! TTAGAACAATTTTCATACCG+GGG + chr4.1:6927495-6927514 None:intergenic 30.0%
! TTTTCTGAATCTCTTCTTTG+GGG + chr4.1:6929478-6929497 None:intergenic 30.0%
!! ATCATCAGAAGTATCTATGA+AGG - chr4.1:6925737-6925756 MS.gene030501:CDS 30.0%
!! TCATCAGAAGTATCTATGAA+GGG - chr4.1:6925738-6925757 MS.gene030501:CDS 30.0%
!!! GATCTGGTTTTTGTATTTGT+AGG - chr4.1:6927842-6927861 MS.gene030501:CDS 30.0%
AAACCACACATGATATGCAA+AGG + chr4.1:6928149-6928168 None:intergenic 35.0%
AAAGATGGCCAACATCTAAA+TGG - chr4.1:6927905-6927924 MS.gene030501:CDS 35.0%
AAATAGCTGATCCAATTCAG+CGG + chr4.1:6929217-6929236 None:intergenic 35.0%
AACGAATGAACATGAAATCG+CGG + chr4.1:6926764-6926783 None:intergenic 35.0%
AAGTTCTCATGATACCTTCA+CGG + chr4.1:6928107-6928126 None:intergenic 35.0%
AATATGAAAGGTTCTGCACA+AGG - chr4.1:6928550-6928569 MS.gene030501:CDS 35.0%
AATGTCTTCAAAAACAAGCG+AGG - chr4.1:6928744-6928763 MS.gene030501:CDS 35.0%
AGACATCTCCATTTAGATGT+TGG + chr4.1:6927916-6927935 None:intergenic 35.0%
ATCTAAATGGAGATGTCTCA+AGG - chr4.1:6927918-6927937 MS.gene030501:CDS 35.0%
ATCTCATATTACCTTGAGCT+TGG + chr4.1:6928594-6928613 None:intergenic 35.0%
ATGAAGGGAAATTCTGTCAA+CGG - chr4.1:6925753-6925772 MS.gene030501:CDS 35.0%
CACCATCAATTTCAACTGTA+AGG + chr4.1:6926926-6926945 None:intergenic 35.0%
GATCAGCTATTTGAATTTGG+AGG - chr4.1:6929225-6929244 MS.gene030501:intron 35.0%
GTTTCTACTTCAAGAAGGTA+TGG - chr4.1:6928379-6928398 MS.gene030501:intron 35.0%
TCACTGTTTATTACAAACCC+CGG - chr4.1:6927475-6927494 MS.gene030501:intron 35.0%
TCTGGAAGAAGATAGAAACA+TGG - chr4.1:6925713-6925732 MS.gene030501:CDS 35.0%
TGATGAATTAACCGCTGAAT+TGG - chr4.1:6929203-6929222 MS.gene030501:intron 35.0%
TGCAACTGATGAAGAAAAGA+TGG - chr4.1:6928351-6928370 MS.gene030501:intron 35.0%
TGTTCCGTATGATCAATACA+TGG - chr4.1:6927639-6927658 MS.gene030501:CDS 35.0%
! AAATTTTCCAGAGGTGAGAA+TGG - chr4.1:6927321-6927340 MS.gene030501:CDS 35.0%
! AATTTTCCAGAGGTGAGAAT+GGG - chr4.1:6927322-6927341 MS.gene030501:CDS 35.0%
! ATCTTTTCTTCATCAGTTGC+AGG + chr4.1:6928352-6928371 None:intergenic 35.0%
! CGGTTTAAAATGAGGTTTGA+GGG - chr4.1:6927694-6927713 MS.gene030501:intron 35.0%
! CTTGTGTTCTATTTTCCACA+AGG - chr4.1:6926019-6926038 MS.gene030501:CDS 35.0%
! GACTCCATGTATTGATCATA+CGG + chr4.1:6927646-6927665 None:intergenic 35.0%
! TATCATGTGTGGTTTTTGTG+TGG - chr4.1:6928154-6928173 MS.gene030501:intron 35.0%
! TCTTGTTGTGTTTGATGTGT+GGG - chr4.1:6927119-6927138 MS.gene030501:intron 35.0%
! TCTTTCTGATTGATTTCGCT+CGG - chr4.1:6927555-6927574 MS.gene030501:intron 35.0%
! TTCCTAATTTTGCAGCATCT+GGG - chr4.1:6926182-6926201 MS.gene030501:intron 35.0%
! TTCTTGTTGTGTTTGATGTG+TGG - chr4.1:6927118-6927137 MS.gene030501:intron 35.0%
! TTGTCACACTTAACTCGTTT+TGG - chr4.1:6926159-6926178 MS.gene030501:intron 35.0%
! TTTAGATGTTGGCCATCTTT+TGG + chr4.1:6927905-6927924 None:intergenic 35.0%
!! ACTATGACTAGTTTATCTGC+TGG + chr4.1:6928955-6928974 None:intergenic 35.0%
!! ATGCTGTTTCTACTTCAAGA+AGG - chr4.1:6928374-6928393 MS.gene030501:intron 35.0%
!! CGTTTTAGGCATATTTTTCG+TGG - chr4.1:6927027-6927046 MS.gene030501:CDS 35.0%
!!! AATCAGGGAGTTTTGTTCAA+TGG - chr4.1:6929433-6929452 MS.gene030501:intron 35.0%
!!! GTGTTTTTGTCAGTTCTAAG+AGG - chr4.1:6927193-6927212 MS.gene030501:CDS 35.0%
!!! GTTGTTTTTGATTGTGGATC+TGG - chr4.1:6926681-6926700 MS.gene030501:CDS 35.0%
AACACAAGTTCTCCTTCTCT+TGG + chr4.1:6926007-6926026 None:intergenic 40.0%
AACCCAGATGCTGCAAAATT+AGG + chr4.1:6926187-6926206 None:intergenic 40.0%
AAGAAATTTAGCGACAGACC+AGG + chr4.1:6928523-6928542 None:intergenic 40.0%
AAGACTCTGACTCCAAAAGA+TGG - chr4.1:6927890-6927909 MS.gene030501:CDS 40.0%
AATGCAACTTACCAAGCTCA+AGG - chr4.1:6928580-6928599 MS.gene030501:intron 40.0%
AATGGTGATACTTACTGCCA+TGG + chr4.1:6929330-6929349 None:intergenic 40.0%
ACAACACAAGTAGGAAGAAG+AGG + chr4.1:6926890-6926909 None:intergenic 40.0%
ACCTGTTCAATATGTCCTTG+TGG + chr4.1:6926037-6926056 None:intergenic 40.0%
AGAACTGGATGTCAATGTCA+AGG - chr4.1:6928407-6928426 MS.gene030501:intron 40.0%
AGAGTCTTCAATGCCAACAA+TGG + chr4.1:6927878-6927897 None:intergenic 40.0%
AGCTTACAGTCACTGTCTTT+CGG + chr4.1:6928778-6928797 None:intergenic 40.0%
AGCTTCGACAAATCAAGCAT+CGG - chr4.1:6926288-6926307 MS.gene030501:CDS 40.0%
AGGTTTACAGGTACCATTGT+TGG - chr4.1:6927862-6927881 MS.gene030501:CDS 40.0%
AGTTCTCATGATACCTTCAC+GGG + chr4.1:6928106-6928125 None:intergenic 40.0%
ATCGACCTTGAGAGGAAATT+TGG - chr4.1:6928279-6928298 MS.gene030501:CDS 40.0%
ATTGGCCGAAAAACTCACAT+TGG + chr4.1:6926592-6926611 None:intergenic 40.0%
CAACACAAGTAGGAAGAAGA+GGG + chr4.1:6926889-6926908 None:intergenic 40.0%
CATGTTATGTTTGCCTTCAC+GGG + chr4.1:6928476-6928495 None:intergenic 40.0%
CTGCACTTTACAGAGAACTA+TGG - chr4.1:6925951-6925970 MS.gene030501:intron 40.0%
CTGTGACGATTCTGTAGAAT+GGG + chr4.1:6928719-6928738 None:intergenic 40.0%
CTTGCTCATATTTCTTCTGC+AGG - chr4.1:6927596-6927615 MS.gene030501:CDS 40.0%
GACAGTGACTGTAAGCTATT+CGG - chr4.1:6928781-6928800 MS.gene030501:intron 40.0%
GAGATGTCTCAAGGTTAGAT+GGG - chr4.1:6927927-6927946 MS.gene030501:CDS 40.0%
GATCATTCATACCTTTGCTC+AGG + chr4.1:6927730-6927749 None:intergenic 40.0%
GCATCTGATACTAGTACTCA+TGG - chr4.1:6926800-6926819 MS.gene030501:CDS 40.0%
GCATGTTATGTTTGCCTTCA+CGG + chr4.1:6928477-6928496 None:intergenic 40.0%
GGAAATTCTGTCAACGGAAA+AGG - chr4.1:6925759-6925778 MS.gene030501:CDS 40.0%
GGGTAAGAACAGAAGAATCT+GGG + chr4.1:6928086-6928105 None:intergenic 40.0%
GGTAAGAACAGAAGAATCTG+GGG + chr4.1:6928085-6928104 None:intergenic 40.0%
GGTCATCAACGTTATGCTAA+AGG - chr4.1:6926357-6926376 MS.gene030501:CDS 40.0%
GGTTCTTCATCGTTATCAAC+AGG - chr4.1:6925819-6925838 MS.gene030501:CDS 40.0%
GTTCAACTCAAACCTCAAAG+TGG - chr4.1:6929024-6929043 MS.gene030501:intron 40.0%
TAGTTTGAACAGAGCAGACA+TGG + chr4.1:6927520-6927539 None:intergenic 40.0%
TCATCGTTATCAACAGGAAG+AGG - chr4.1:6925825-6925844 MS.gene030501:CDS 40.0%
TCCACAAGGACATATTGAAC+AGG - chr4.1:6926033-6926052 MS.gene030501:CDS 40.0%
TCTGATACTAGTACTCATGG+TGG - chr4.1:6926803-6926822 MS.gene030501:CDS 40.0%
TCTGTGACGATTCTGTAGAA+TGG + chr4.1:6928720-6928739 None:intergenic 40.0%
TGTGACGATTCTGTAGAATG+GGG + chr4.1:6928718-6928737 None:intergenic 40.0%
TTCAGCCAAATTTCCTCTCA+AGG + chr4.1:6928287-6928306 None:intergenic 40.0%
TTGGCCGAAAAACTCACATT+GGG + chr4.1:6926591-6926610 None:intergenic 40.0%
! AGAGCCCAATGTGAGTTTTT+CGG - chr4.1:6926584-6926603 MS.gene030501:CDS 40.0%
! AGCATCGTCAAAAGTATGCA+TGG - chr4.1:6928207-6928226 MS.gene030501:intron 40.0%
! ATTGGAAGAGGATTTAGAGC+TGG + chr4.1:6928021-6928040 None:intergenic 40.0%
! ATTTTCCAGAGGTGAGAATG+GGG - chr4.1:6927323-6927342 MS.gene030501:CDS 40.0%
! CTTGTTGTGTTTGATGTGTG+GGG - chr4.1:6927120-6927139 MS.gene030501:intron 40.0%
! CTTTGAGAAATTGAAGGGTC+CGG + chr4.1:6928835-6928854 None:intergenic 40.0%
! GACAAATCTGAGTTGAGACA+CGG + chr4.1:6926144-6926163 None:intergenic 40.0%
! GCGGTTTAAAATGAGGTTTG+AGG - chr4.1:6927693-6927712 MS.gene030501:intron 40.0%
! GTGGTCTTCACTGATAATGA+GGG - chr4.1:6929279-6929298 MS.gene030501:CDS 40.0%
! GTTCCTAATTTTGCAGCATC+TGG - chr4.1:6926181-6926200 MS.gene030501:intron 40.0%
! TAGGCATGCGGTTTAAAATG+AGG - chr4.1:6927686-6927705 MS.gene030501:intron 40.0%
! TTTTCGAACTCAATGTGCCT+GGG + chr4.1:6929505-6929524 None:intergenic 40.0%
!! GGTGTTTGTTGTGTGTTGAT+AGG - chr4.1:6926942-6926961 MS.gene030501:CDS 40.0%
!! TTTTTCGAACTCAATGTGCC+TGG + chr4.1:6929506-6929525 None:intergenic 40.0%
!!! TTTTGTCAGTTCTAAGAGGC+TGG - chr4.1:6927197-6927216 MS.gene030501:CDS 40.0%
AAATTTAGCGACAGACCAGG+TGG + chr4.1:6928520-6928539 None:intergenic 45.0%
AACGTATTCGGACCTTCTGT+CGG - chr4.1:6928438-6928457 MS.gene030501:CDS 45.0%
AAGAACAGAAGAATCTGGGG+AGG + chr4.1:6928082-6928101 None:intergenic 45.0%
AAGGCAAAATCAGCAAGCAG+TGG + chr4.1:6927795-6927814 None:intergenic 45.0%
AAGGCTGGAACCAACGTATT+CGG - chr4.1:6928426-6928445 MS.gene030501:intron 45.0%
AATCATTCAGCTACCGATGG+CGG - chr4.1:6929533-6929552 MS.gene030501:CDS 45.0%
AATGAGGTTTGAGGGTGAAG+AGG - chr4.1:6927702-6927721 MS.gene030501:intron 45.0%
ACAACCACCTACACAGGAAT+TGG - chr4.1:6926975-6926994 MS.gene030501:CDS 45.0%
ATGACCCGACAAAGGATCTT+AGG + chr4.1:6926343-6926362 None:intergenic 45.0%
CAAGAATCATCGACCTTGAG+AGG - chr4.1:6928271-6928290 MS.gene030501:CDS 45.0%
CCACACATGATATGCAAAGG+AGG + chr4.1:6928146-6928165 None:intergenic 45.0%
CCTCCTTTGCATATCATGTG+TGG - chr4.1:6928143-6928162 MS.gene030501:intron 45.0%
CGGGTAAGAACAGAAGAATC+TGG + chr4.1:6928087-6928106 None:intergenic 45.0%
CTCTGGTACCAAAGTCACTT+GGG + chr4.1:6926568-6926587 None:intergenic 45.0%
CTTAGGACGGAGATCGTAAA+CGG + chr4.1:6926326-6926345 None:intergenic 45.0%
CTTCTAGCAGAACCACTTTG+AGG + chr4.1:6929039-6929058 None:intergenic 45.0%
GAAAAACTCACATTGGGCTC+TGG + chr4.1:6926585-6926604 None:intergenic 45.0%
GAAAGCAACGTTGATGCTGT+TGG - chr4.1:6925783-6925802 MS.gene030501:CDS 45.0%
GAATGAACATGAAATCGCGG+CGG + chr4.1:6926761-6926780 None:intergenic 45.0%
GAGAATCATTCAGCTACCGA+TGG - chr4.1:6929530-6929549 MS.gene030501:CDS 45.0%
GAGATTCAGAAAATGAGCCC+AGG - chr4.1:6929485-6929504 MS.gene030501:CDS 45.0%
GCAAACACCTCATCAGTATC+TGG + chr4.1:6926546-6926565 None:intergenic 45.0%
GCAGGGTAATGTTCCATCTT+CGG - chr4.1:6927380-6927399 MS.gene030501:CDS 45.0%
GCTGTTGGAGATGCTCAAAA+TGG - chr4.1:6925798-6925817 MS.gene030501:CDS 45.0%
GGAGATGTCTCAAGGTTAGA+TGG - chr4.1:6927926-6927945 MS.gene030501:CDS 45.0%
GGCATCAAAAAGTTTCCGTG+TGG + chr4.1:6928667-6928686 None:intergenic 45.0%
GGTGATTACTCAGTGCTTCA+TGG - chr4.1:6928625-6928644 MS.gene030501:intron 45.0%
GTCAAAACAACCACCTACAC+AGG - chr4.1:6926969-6926988 MS.gene030501:CDS 45.0%
TAAATCCTCTTCCAATGCCC+AGG - chr4.1:6928025-6928044 MS.gene030501:intron 45.0%
TACGGAACAATAAACTCCGC+TGG + chr4.1:6927628-6927647 None:intergenic 45.0%
TCCGTCCTAAGATCCTTTGT+CGG - chr4.1:6926335-6926354 MS.gene030501:CDS 45.0%
TCTAGCCATAGCATGCATCT+CGG - chr4.1:6927408-6927427 MS.gene030501:CDS 45.0%
TCTCTTGGAACCGTTACCAA+AGG + chr4.1:6925992-6926011 None:intergenic 45.0%
TCTTCTGTTCTTACCCGTGA+AGG - chr4.1:6928090-6928109 MS.gene030501:CDS 45.0%
TGGCTAGAGATAACCGAAGA+TGG + chr4.1:6927396-6927415 None:intergenic 45.0%
TTAGGACGGAGATCGTAAAC+GGG + chr4.1:6926325-6926344 None:intergenic 45.0%
! AGAGCAGGCTCTATTTTCCA+AGG + chr4.1:6927991-6928010 None:intergenic 45.0%
! AGCAGGCTCTATTTTCCAAG+GGG + chr4.1:6927989-6928008 None:intergenic 45.0%
! CGTGGTCTTCACTGATAATG+AGG - chr4.1:6929278-6929297 MS.gene030501:CDS 45.0%
! GAAGGTATGGTTCAGAGAAC+TGG - chr4.1:6928392-6928411 MS.gene030501:intron 45.0%
! GAGCAGGCTCTATTTTCCAA+GGG + chr4.1:6927990-6928009 None:intergenic 45.0%
! GTGTGGGGTGAATTGATTTC+AGG - chr4.1:6927135-6927154 MS.gene030501:intron 45.0%
!! TAACGTTGATGACCCGACAA+AGG + chr4.1:6926351-6926370 None:intergenic 45.0%
!! TTGGTAACGGTTCCAAGAGA+AGG - chr4.1:6925992-6926011 MS.gene030501:CDS 45.0%
!!! CTTGGCATGCTGTTTTGACT+GGG - chr4.1:6927445-6927464 MS.gene030501:intron 45.0%
!! TTATTAAATTATTCAAAAAA+AGG + chr4.1:6926399-6926418 None:intergenic 5.0%
ACAGAAGAATCTGGGGAGGA+CGG + chr4.1:6928078-6928097 None:intergenic 50.0%
ACCACCTACACAGGAATTGG+TGG - chr4.1:6926978-6926997 MS.gene030501:CDS 50.0%
ACGTATTCGGACCTTCTGTC+GGG - chr4.1:6928439-6928458 MS.gene030501:CDS 50.0%
AGAAAGGGATTGCGCTTGGT+AGG - chr4.1:6929151-6929170 MS.gene030501:intron 50.0%
AGCAGAGAACAAACCAGTGG+AGG + chr4.1:6926866-6926885 None:intergenic 50.0%
ATTGAAGGGTCCGGCATAGT+TGG + chr4.1:6928826-6928845 None:intergenic 50.0%
CACAAGAAAGGGATTGCGCT+TGG - chr4.1:6929147-6929166 MS.gene030501:intron 50.0%
CACTACCAAATCCCGACAGA+AGG + chr4.1:6928453-6928472 None:intergenic 50.0%
CCCGACAAAGGATCTTAGGA+CGG + chr4.1:6926339-6926358 None:intergenic 50.0%
CCGTCCTAAGATCCTTTGTC+GGG - chr4.1:6926336-6926355 MS.gene030501:CDS 50.0%
CTCAGGACGAGGTATGTTAG+AGG + chr4.1:6927959-6927978 None:intergenic 50.0%
CTCTGCAGCAAATGTCTACG+TGG + chr4.1:6927165-6927184 None:intergenic 50.0%
CTGGATGTCAATGTCAAGGC+TGG - chr4.1:6928411-6928430 MS.gene030501:intron 50.0%
GAACACCGAGATGCATGCTA+TGG + chr4.1:6927416-6927435 None:intergenic 50.0%
GACAGAAGGTCCGAATACGT+TGG + chr4.1:6928439-6928458 None:intergenic 50.0%
GAGAACAAACCAGTGGAGGA+AGG + chr4.1:6926862-6926881 None:intergenic 50.0%
GAGGGTGACATGATGCTTGT+TGG - chr4.1:6929297-6929316 MS.gene030501:CDS 50.0%
GCTCTGGTACCAAAGTCACT+TGG + chr4.1:6926569-6926588 None:intergenic 50.0%
GGTGTTTGCCCAAGTGACTT+TGG - chr4.1:6926557-6926576 MS.gene030501:CDS 50.0%
TAAAAGGCCTCGAGCTAACG+TGG - chr4.1:6928050-6928069 MS.gene030501:intron 50.0%
TCTCAGTAGCCCAACTATGC+CGG - chr4.1:6928813-6928832 MS.gene030501:intron 50.0%
TGATGAATGCCTTCCTCCAC+TGG - chr4.1:6926850-6926869 MS.gene030501:CDS 50.0%
TGGGGACTCTCGTATTGAGT+TGG + chr4.1:6928700-6928719 None:intergenic 50.0%
TTCCAAGGGGAAACTCTCTC+AGG + chr4.1:6927976-6927995 None:intergenic 50.0%
TTCCAATGCCCAGGCCTAAA+AGG - chr4.1:6928034-6928053 MS.gene030501:intron 50.0%
TTCTTGTGCATCTCCGCCAT+CGG + chr4.1:6929549-6929568 None:intergenic 50.0%
TTGAAGGGTCCGGCATAGTT+GGG + chr4.1:6928825-6928844 None:intergenic 50.0%
TTGGCCACCAATTCCTGTGT+AGG + chr4.1:6926985-6927004 None:intergenic 50.0%
! ACCACGAGCCAATCCTTTTG+TGG + chr4.1:6929264-6929283 None:intergenic 50.0%
! ACCCTCTGGAAACCACTAGT+GGG + chr4.1:6928241-6928260 None:intergenic 50.0%
! ACGGGAATGAGTGGCGTTTT+AGG - chr4.1:6927013-6927032 MS.gene030501:CDS 50.0%
! ACGTTAGCTCGAGGCCTTTT+AGG + chr4.1:6928051-6928070 None:intergenic 50.0%
! CGTAGACATTTGCTGCAGAG+TGG - chr4.1:6927165-6927184 MS.gene030501:intron 50.0%
! GACATTTGCTGCAGAGTGGT+TGG - chr4.1:6927169-6927188 MS.gene030501:intron 50.0%
! GGAAACCACTAGTGGGCAAA+GGG + chr4.1:6928234-6928253 None:intergenic 50.0%
! GGAAGAGGATTTAGAGCTGG+AGG + chr4.1:6928018-6928037 None:intergenic 50.0%
! GTGTGCTGGTCCTTTGGTAA+CGG - chr4.1:6925979-6925998 MS.gene030501:CDS 50.0%
! TACACAGGAATTGGTGGCCA+AGG - chr4.1:6926984-6927003 MS.gene030501:CDS 50.0%
! TGGAAACCACTAGTGGGCAA+AGG + chr4.1:6928235-6928254 None:intergenic 50.0%
! TTCTAAGAGGCTGGTTGCTG+GGG - chr4.1:6927206-6927225 MS.gene030501:CDS 50.0%
!! AGTTCTAAGAGGCTGGTTGC+TGG - chr4.1:6927204-6927223 MS.gene030501:CDS 50.0%
!! CTCTCGTATTGAGTTGGTGG+TGG + chr4.1:6928694-6928713 None:intergenic 50.0%
!! GGACTCTCGTATTGAGTTGG+TGG + chr4.1:6928697-6928716 None:intergenic 50.0%
!! GTTCTAAGAGGCTGGTTGCT+GGG - chr4.1:6927205-6927224 MS.gene030501:CDS 50.0%
!! TATTGAGTTGGTGGTGGTGG+TGG + chr4.1:6928688-6928707 None:intergenic 50.0%
!! TCCACAAAAGGATTGGCTCG+TGG - chr4.1:6929260-6929279 MS.gene030501:CDS 50.0%
!! TCGTATTGAGTTGGTGGTGG+TGG + chr4.1:6928691-6928710 None:intergenic 50.0%
!!! GCTTGGCATGCTGTTTTGAC+TGG - chr4.1:6927444-6927463 MS.gene030501:intron 50.0%
AAGCTCCCCATTCTCACCTC+TGG + chr4.1:6927331-6927350 None:intergenic 55.0%
AGGATCTGCACGGGAATGAG+TGG - chr4.1:6927004-6927023 MS.gene030501:CDS 55.0%
AGGCGTGCAATGAGACAGCA+GGG - chr4.1:6927363-6927382 MS.gene030501:CDS 55.0%
AGGGATTGCGCTTGGTAGGT+CGG - chr4.1:6929155-6929174 MS.gene030501:intron 55.0%
ATGGACCCTTTGCCCACTAG+TGG - chr4.1:6928226-6928245 MS.gene030501:intron 55.0%
CAATGGCCTGTAATGCCACC+TGG - chr4.1:6928502-6928521 MS.gene030501:CDS 55.0%
CTCATTCCCGTGCAGATCCT+TGG + chr4.1:6927004-6927023 None:intergenic 55.0%
CTTCTGCAGGACAAGTCCAG+CGG - chr4.1:6927609-6927628 MS.gene030501:CDS 55.0%
CTTGACCTTGCAAGACCCTC+TGG + chr4.1:6928255-6928274 None:intergenic 55.0%
GAACTATGGCATGCGTGTGC+TGG - chr4.1:6925965-6925984 MS.gene030501:intron 55.0%
GACAGACCAGGTGGCATTAC+AGG + chr4.1:6928511-6928530 None:intergenic 55.0%
GAGAATGGGGAGCTTCGAGT+TGG - chr4.1:6927336-6927355 MS.gene030501:CDS 55.0%
GCCACCAATTCCTGTGTAGG+TGG + chr4.1:6926982-6927001 None:intergenic 55.0%
GCCCACTAGTGGTTTCCAGA+GGG - chr4.1:6928237-6928256 MS.gene030501:intron 55.0%
GGGAGCAGAGAACAAACCAG+TGG + chr4.1:6926869-6926888 None:intergenic 55.0%
GGTTTCCAGAGGGTCTTGCA+AGG - chr4.1:6928247-6928266 MS.gene030501:intron 55.0%
GTCCTGAGAGAGTTTCCCCT+TGG - chr4.1:6927971-6927990 MS.gene030501:intron 55.0%
GTGAAGAGGCTCCTGAGCAA+AGG - chr4.1:6927716-6927735 MS.gene030501:intron 55.0%
TCGGACCTTCTGTCGGGATT+TGG - chr4.1:6928445-6928464 MS.gene030501:CDS 55.0%
TGAACATGAAATCGCGGCGG+AGG + chr4.1:6926758-6926777 None:intergenic 55.0%
TGCCCACTAGTGGTTTCCAG+AGG - chr4.1:6928236-6928255 MS.gene030501:intron 55.0%
! GACCCTCTGGAAACCACTAG+TGG + chr4.1:6928242-6928261 None:intergenic 55.0%
! TCGGTGTTCTTGCGACTGCT+TGG - chr4.1:6927427-6927446 MS.gene030501:intron 55.0%
! TGCTTGTTGGCGACGATCCA+TGG - chr4.1:6929310-6929329 MS.gene030501:CDS 55.0%
! TTGGTGGCCAAGGATCTGCA+CGG - chr4.1:6926994-6927013 MS.gene030501:CDS 55.0%
!! GGATTTGGTAGTGCCCGTGA+AGG - chr4.1:6928460-6928479 MS.gene030501:CDS 55.0%
!! TTAGGCCTGGGCATTGGAAG+AGG + chr4.1:6928033-6928052 None:intergenic 55.0%
AGAGCTGGAGGAGCAAGAGC+AGG + chr4.1:6928006-6928025 None:intergenic 60.0%
AGTTGCAGGCGTCCACGCAA+CGG + chr4.1:6928338-6928357 None:intergenic 60.0%
CAGGCGTGCAATGAGACAGC+AGG - chr4.1:6927362-6927381 MS.gene030501:CDS 60.0%
CTGCAGAGAAGTCCGTTGCG+TGG - chr4.1:6928323-6928342 MS.gene030501:intron 60.0%
GGCGGAGCCAGATACTGATG+AGG - chr4.1:6926536-6926555 MS.gene030501:CDS 60.0%
GGGGAAACTCTCTCAGGACG+AGG + chr4.1:6927970-6927989 None:intergenic 60.0%
TGGTGGCCAAGGATCTGCAC+GGG - chr4.1:6926995-6927014 MS.gene030501:CDS 60.0%
! AGCTCGAGGCCTTTTAGGCC+TGG + chr4.1:6928046-6928065 None:intergenic 60.0%
! GCATGCGTGTGCTGGTCCTT+TGG - chr4.1:6925973-6925992 MS.gene030501:CDS 60.0%
! GCTCGAGGCCTTTTAGGCCT+GGG + chr4.1:6928045-6928064 None:intergenic 60.0%
! GGCCTTTTAGGCCTGGGCAT+TGG + chr4.1:6928039-6928058 None:intergenic 60.0%
!! GGGAGCTTCGAGTTGGTGTC+AGG - chr4.1:6927343-6927362 MS.gene030501:CDS 60.0%
GACGGCACCACGTTAGCTCG+AGG + chr4.1:6928060-6928079 None:intergenic 65.0%
TGAAATCGCGGCGGAGGAGC+AGG + chr4.1:6926752-6926771 None:intergenic 65.0%
AATCGCGGCGGAGGAGCAGG+TGG + chr4.1:6926749-6926768 None:intergenic 70.0%
ATCGCGGCGGAGGAGCAGGT+GGG + chr4.1:6926748-6926767 None:intergenic 70.0%
TCGCGGCGGAGGAGCAGGTG+GGG + chr4.1:6926747-6926766 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 6925696 6929607 6925696 ID=MS.gene030501
chr4.1 mRNA 6925696 6929607 6925696 ID=MS.gene030501.t1;Parent=MS.gene030501
chr4.1 exon 6929457 6929607 6929457 ID=MS.gene030501.t1.exon1;Parent=MS.gene030501.t1
chr4.1 CDS 6929457 6929607 6929457 ID=cds.MS.gene030501.t1;Parent=MS.gene030501.t1
chr4.1 exon 6929249 6929361 6929249 ID=MS.gene030501.t1.exon2;Parent=MS.gene030501.t1
chr4.1 CDS 6929249 6929361 6929249 ID=cds.MS.gene030501.t1;Parent=MS.gene030501.t1
chr4.1 exon 6928925 6929020 6928925 ID=MS.gene030501.t1.exon3;Parent=MS.gene030501.t1
chr4.1 CDS 6928925 6929020 6928925 ID=cds.MS.gene030501.t1;Parent=MS.gene030501.t1
chr4.1 exon 6928710 6928766 6928710 ID=MS.gene030501.t1.exon4;Parent=MS.gene030501.t1
chr4.1 CDS 6928710 6928766 6928710 ID=cds.MS.gene030501.t1;Parent=MS.gene030501.t1
chr4.1 exon 6928432 6928587 6928432 ID=MS.gene030501.t1.exon5;Parent=MS.gene030501.t1
chr4.1 CDS 6928432 6928587 6928432 ID=cds.MS.gene030501.t1;Parent=MS.gene030501.t1
chr4.1 exon 6928255 6928339 6928255 ID=MS.gene030501.t1.exon6;Parent=MS.gene030501.t1
chr4.1 CDS 6928255 6928339 6928255 ID=cds.MS.gene030501.t1;Parent=MS.gene030501.t1
chr4.1 exon 6928056 6928146 6928056 ID=MS.gene030501.t1.exon7;Parent=MS.gene030501.t1
chr4.1 CDS 6928056 6928146 6928056 ID=cds.MS.gene030501.t1;Parent=MS.gene030501.t1
chr4.1 exon 6927807 6927971 6927807 ID=MS.gene030501.t1.exon8;Parent=MS.gene030501.t1
chr4.1 CDS 6927807 6927971 6927807 ID=cds.MS.gene030501.t1;Parent=MS.gene030501.t1
chr4.1 exon 6927566 6927685 6927566 ID=MS.gene030501.t1.exon9;Parent=MS.gene030501.t1
chr4.1 CDS 6927566 6927685 6927566 ID=cds.MS.gene030501.t1;Parent=MS.gene030501.t1
chr4.1 exon 6927192 6927439 6927192 ID=MS.gene030501.t1.exon10;Parent=MS.gene030501.t1
chr4.1 CDS 6927192 6927439 6927192 ID=cds.MS.gene030501.t1;Parent=MS.gene030501.t1
chr4.1 exon 6926235 6927094 6926235 ID=MS.gene030501.t1.exon11;Parent=MS.gene030501.t1
chr4.1 CDS 6926235 6927094 6926235 ID=cds.MS.gene030501.t1;Parent=MS.gene030501.t1
chr4.1 exon 6925969 6926159 6925969 ID=MS.gene030501.t1.exon12;Parent=MS.gene030501.t1
chr4.1 CDS 6925969 6926159 6925969 ID=cds.MS.gene030501.t1;Parent=MS.gene030501.t1
chr4.1 exon 6925696 6925864 6925696 ID=MS.gene030501.t1.exon13;Parent=MS.gene030501.t1
chr4.1 CDS 6925696 6925864 6925696 ID=cds.MS.gene030501.t1;Parent=MS.gene030501.t1
Gene Sequence

>MS.gene030501

ATGTTTGGGATGAGAGATCTGGAAGAAGATAGAAACATGGCATCATCAGAAGTATCTATGAAGGGAAATTCTGTCAACGGAAAAGGTGAAAGCAACGTTGATGCTGTTGGAGATGCTCAAAATGGTTCTTCATCGTTATCAACAGGAAGAGGTAACAACTTACAACGTTAACATGGTTTTCTTTGTAATTAAGGTTTCTTTTAACAAATTTATGGAGTGATAATGTTTTTAATTTTATTTTTTCAGAAGCTGAAGCTGCACTTTACAGAGAACTATGGCATGCGTGTGCTGGTCCTTTGGTAACGGTTCCAAGAGAAGGAGAACTTGTGTTCTATTTTCCACAAGGACATATTGAACAGGTAACACAAAACATTACCTATTTTCCGACAATTATCTTTCATGGTTTGGTTCTTGTTCTGTTTAGTTAAGTTAGTTACTCATGTTACCGTGTCTCAACTCAGATTTGTCACACTTAACTCGTTTTGGTTCCTAATTTTGCAGCATCTGGGTTTTTTCTTTTTATATTAGAATTAGAGTTATTATGATGATGATGATTATGCTGAAATTAACATAATTCAATGCATTAGGTGGAAGCTTCGACAAATCAAGCATCGGAACAACACATGCCCGTTTACGATCTCCGTCCTAAGATCCTTTGTCGGGTCATCAACGTTATGCTAAAGGTGAATTTTCCTCTTTTCCTTTTTTTGAATAATTTAATAAATTCCTTTCTTTTTCTAACAGTAACACAGTTGTTTTGTTTGTGTAATTATAAAATAAAATAAATTACAATTATTTATCTTTTAATTATTGATTAATTTTTGTATATTTTTTTTTGTAGGCGGAGCCAGATACTGATGAGGTGTTTGCCCAAGTGACTTTGGTACCAGAGCCCAATGTGAGTTTTTCGGCCAATTTTCTTTTAGTTTCTTTGGTTTGGAGTAACAAACACAGCATGTTCTAATTTTTTTTTTTTTTTTTTTGTGTTGTTTTTGATTGTGGATCTGGATGATATTGTAGCAAGATGAAAATGCTGTTGAGAAAGAAGCCCCACCTGCTCCTCCGCCGCGATTTCATGTTCATTCGTTTTGTAAAACATTGACTGCATCTGATACTAGTACTCATGGTGGTTTTTCTGTACTTAGACGTCATGCTGATGAATGCCTTCCTCCACTGGTTTGTTCTCTGCTCCCTCTTCTTCCTACTTGTGTTGTTTAATTGTTTTTTCCTTACAGTTGAAATTGATGGTGTTTGTTGTGTGTTGATAGGATATGTCAAAACAACCACCTACACAGGAATTGGTGGCCAAGGATCTGCACGGGAATGAGTGGCGTTTTAGGCATATTTTTCGTGGTAATTACTAGTTCATCTTCAACTGTTGACCACTTGATTTATTTTGTATTCATTTTTGTTCATATTTTGTTCTTGTTGTGTTTGATGTGTGGGGTGAATTGATTTCAGGTCAACCACGTAGACATTTGCTGCAGAGTGGTTGGAGTGTTTTTGTCAGTTCTAAGAGGCTGGTTGCTGGGGATGCATTTATATTTCTAAGGTTTGCTTATTTGTTATAACATCGCTTTTGAATTAGTGTTTTTTGTTATTGTTGGTGTTTTTGACTAATTTAGAAATTTTCCAGAGGTGAGAATGGGGAGCTTCGAGTTGGTGTCAGGCGTGCAATGAGACAGCAGGGTAATGTTCCATCTTCGGTTATCTCTAGCCATAGCATGCATCTCGGTGTTCTTGCGACTGCTTGGCATGCTGTTTTGACTGGGACCATGTTCACTGTTTATTACAAACCCCGGTATGAAAATTGTTCTAAAACCATGTCTGCTCTGTTCAAACTATTAACTAATTTGTGTTCTTTCTGATTGATTTCGCTCGGCAGTAAGTTTACACCGTTCTTGCTCATATTTCTTCTGCAGGACAAGTCCAGCGGAGTTTATTGTTCCGTATGATCAATACATGGAGTCTCTAAAAAATAATTATACAATAGGCATGCGGTTTAAAATGAGGTTTGAGGGTGAAGAGGCTCCTGAGCAAAGGTATGAATGATCAATACATTAATGTCTTTTTTCTCTGATTAAGTTTTAATGTTGCCACTGCTTGCTGATTTTGCCTTTTTATTCTTTATCTAATAGTTTATTTTGATCTGGTTTTTGTATTTGTAGGTTTACAGGTACCATTGTTGGCATTGAAGACTCTGACTCCAAAAGATGGCCAACATCTAAATGGAGATGTCTCAAGGTTAGATGGGATGAAACCTCTAACATACCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCTCTAAATCCTCTTCCAATGCCCAGGCCTAAAAGGCCTCGAGCTAACGTGGTGCCGTCCTCCCCAGATTCTTCTGTTCTTACCCGTGAAGGTATCATGAGAACTTTATATTTCTAAGAATTCCTCCTTTGCATATCATGTGTGGTTTTTGTGTGGAGCCTGATTTGTTTTTGTTGATCAATTAACAGCATCGTCAAAAGTATGCATGGACCCTTTGCCCACTAGTGGTTTCCAGAGGGTCTTGCAAGGTCAAGAATCATCGACCTTGAGAGGAAATTTGGCTGAAAGCAACGACTCTTACACTGCAGAGAAGTCCGTTGCGTGGACGCCTGCAACTGATGAAGAAAAGATGGATGCTGTTTCTACTTCAAGAAGGTATGGTTCAGAGAACTGGATGTCAATGTCAAGGCTGGAACCAACGTATTCGGACCTTCTGTCGGGATTTGGTAGTGCCCGTGAAGGCAAACATAACATGCTTACTCAATGGCCTGTAATGCCACCTGGTCTGTCGCTAAATTTCTTGCACTCTAATATGAAAGGTTCTGCACAAGGCAGTGATAATGCAACTTACCAAGCTCAAGGTAATATGAGATACAGTGCATTTGGTGATTACTCAGTGCTTCATGGACATAAAGTTGAAAATCCACACGGAAACTTTTTGATGCCACCACCACCACCAACTCAATACGAGAGTCCCCATTCTACAGAATCGTCACAGAAACAAATGTCTTCAAAAACAAGCGAGGCTGCAAAACCGAAAGACAGTGACTGTAAGCTATTCGGCTTCTCGCTTCTCAGTAGCCCAACTATGCCGGACCCTTCAATTTCTCAAAGAAATGTTACAAACGAGACTTCTAGTCCCATGCAAATTTCATCACAACATCACACATTTGAAAATGATCAGAAGTCTGAACATTCAAAGAGCTTCAAACCAGCAGATAAACTAGTCATAGTTGATGAGCACGAGAAGCAGCTGCAAACTTCTCAGCCTCATGTTAAAGATGTTCAACTCAAACCTCAAAGTGGTTCTGCTAGAAGCTGCACAAAAGTAAGTATCTGCATTGTTATTGTTACCTTTTTGACAATAAACTAGAGATTAATAACGAAATGATTCTTATTTAAGGTTCACAAGAAAGGGATTGCGCTTGGTAGGTCGGTTGATCTTACAAAGTTTAGTGACTATGATGAATTAACCGCTGAATTGGATCAGCTATTTGAATTTGGAGGTGAACTAATATCTCCACAAAAGGATTGGCTCGTGGTCTTCACTGATAATGAGGGTGACATGATGCTTGTTGGCGACGATCCATGGCAGTAAGTATCACCATTTATAGTTCTCTGATTACCCTTTTTAATTGATTTTTTTCCCTTTCTCAAGAATGACCTTATTTGTATTATTTTTGTGTACTCAAAATCAGGGAGTTTTGTTCAATGGTTCGCAAAATTTACATCTACCCCAAAGAAGAGATTCAGAAAATGAGCCCAGGCACATTGAGTTCGAAAAATGAAGAGAATCATTCAGCTACCGATGGCGGAGATGCACAAGAAACTAAATCTCAGCTGAATCAATCAGCTTCAGATAATTGA
Protein sequence

>MS.gene030501.t1

MFGMRDLEEDRNMASSEVSMKGNSVNGKGESNVDAVGDAQNGSSSLSTGREAEAALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDSKRWPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRANVVPSSPDSSVLTREASSKVCMDPLPTSGFQRVLQGQESSTLRGNLAESNDSYTAEKSVAWTPATDEEKMDAVSTSRRYGSENWMSMSRLEPTYSDLLSGFGSAREGKHNMLTQWPVMPPGLSLNFLHSNMKGSAQGSDNATYQAQGNMRYSAFGDYSVLHGHKVENPHGNFLMPPPPPTQYESPHSTESSQKQMSSKTSEAAKPKDSDCKLFGFSLLSSPTMPDPSISQRNVTNETSSPMQISSQHHTFENDQKSEHSKSFKPADKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLTKFSDYDELTAELDQLFEFGGELISPQKDWLVVFTDNEGDMMLVGDDPWQEFCSMVRKIYIYPKEEIQKMSPGTLSSKNEENHSATDGGDAQETKSQLNQSASDN