Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030509.t1 | ATO87670.1 | 92.8 | 69 | 5 | 0 | 13 | 81 | 90 | 158 | 5.10E-29 | 136.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030509.t1 | Q2V9B0 | 87.0 | 69 | 9 | 0 | 13 | 81 | 95 | 163 | 3.0e-30 | 132.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030509.t1 | A0A072V1C4 | 92.8 | 69 | 5 | 0 | 13 | 81 | 84 | 152 | 3.7e-29 | 136.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene030509.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030509.t1 | MTR_0036s0260 | 83.824 | 68 | 11 | 0 | 13 | 80 | 28 | 95 | 2.20e-36 | 122 |
MS.gene030509.t1 | MTR_4g100630 | 77.612 | 67 | 15 | 0 | 14 | 80 | 96 | 162 | 1.93e-34 | 120 |
MS.gene030509.t1 | MTR_2g090305 | 80.882 | 68 | 13 | 0 | 13 | 80 | 28 | 95 | 3.10e-34 | 115 |
MS.gene030509.t1 | MTR_6g092540 | 76.923 | 65 | 15 | 0 | 13 | 77 | 97 | 161 | 1.77e-33 | 116 |
MS.gene030509.t1 | MTR_2g100930 | 73.529 | 68 | 18 | 0 | 13 | 80 | 109 | 176 | 3.72e-33 | 117 |
MS.gene030509.t1 | MTR_8g101650 | 68.421 | 76 | 22 | 2 | 3 | 77 | 94 | 168 | 5.45e-32 | 112 |
MS.gene030509.t1 | MTR_4g111975 | 71.014 | 69 | 20 | 0 | 10 | 78 | 135 | 203 | 7.45e-31 | 110 |
MS.gene030509.t1 | MTR_5g037080 | 84.058 | 69 | 11 | 0 | 13 | 81 | 102 | 170 | 1.34e-30 | 109 |
MS.gene030509.t1 | MTR_4g107230 | 92.754 | 69 | 5 | 0 | 13 | 81 | 84 | 152 | 7.32e-30 | 107 |
MS.gene030509.t1 | MTR_1g111830 | 64.789 | 71 | 24 | 1 | 14 | 83 | 125 | 195 | 4.76e-28 | 101 |
MS.gene030509.t1 | MTR_7g067080 | 65.672 | 67 | 23 | 0 | 13 | 79 | 140 | 206 | 2.12e-27 | 101 |
MS.gene030509.t1 | MTR_3g462790 | 65.672 | 67 | 23 | 0 | 13 | 79 | 147 | 213 | 4.29e-27 | 100 |
MS.gene030509.t1 | MTR_5g069710 | 66.667 | 66 | 22 | 0 | 13 | 78 | 132 | 197 | 5.52e-27 | 100 |
MS.gene030509.t1 | MTR_3g104370 | 59.155 | 71 | 26 | 1 | 13 | 80 | 91 | 161 | 1.68e-24 | 92.0 |
MS.gene030509.t1 | MTR_5g081860 | 60.563 | 71 | 26 | 1 | 13 | 81 | 125 | 195 | 1.25e-23 | 90.9 |
MS.gene030509.t1 | MTR_8g063600 | 57.746 | 71 | 28 | 1 | 10 | 78 | 103 | 173 | 1.18e-22 | 88.6 |
MS.gene030509.t1 | MTR_1g048660 | 49.275 | 69 | 35 | 0 | 14 | 82 | 13 | 81 | 3.96e-20 | 77.4 |
MS.gene030509.t1 | MTR_8g063870 | 56.061 | 66 | 27 | 1 | 15 | 78 | 94 | 159 | 4.85e-20 | 81.3 |
MS.gene030509.t1 | MTR_4g015130 | 59.649 | 57 | 23 | 0 | 23 | 79 | 3 | 59 | 8.87e-20 | 76.3 |
MS.gene030509.t1 | MTR_5g027570 | 45.333 | 75 | 39 | 1 | 10 | 82 | 89 | 163 | 1.48e-19 | 79.3 |
MS.gene030509.t1 | MTR_1g033620 | 68.627 | 51 | 16 | 0 | 28 | 78 | 20 | 70 | 5.39e-19 | 78.2 |
MS.gene030509.t1 | MTR_5g088010 | 44.737 | 76 | 39 | 1 | 8 | 80 | 55 | 130 | 1.36e-18 | 77.0 |
MS.gene030509.t1 | MTR_5g088060 | 46.479 | 71 | 35 | 1 | 15 | 82 | 274 | 344 | 2.23e-17 | 75.5 |
MS.gene030509.t1 | MTR_5g488160 | 46.479 | 71 | 35 | 1 | 15 | 82 | 274 | 344 | 2.23e-17 | 75.5 |
MS.gene030509.t1 | MTR_5g027550 | 46.575 | 73 | 36 | 1 | 13 | 82 | 77 | 149 | 1.12e-16 | 71.6 |
MS.gene030509.t1 | MTR_1g083180 | 43.590 | 78 | 40 | 2 | 8 | 82 | 56 | 132 | 4.88e-14 | 63.9 |
MS.gene030509.t1 | MTR_5g075760 | 48.485 | 66 | 31 | 2 | 15 | 78 | 107 | 171 | 1.53e-12 | 60.5 |
MS.gene030509.t1 | MTR_5g075790 | 46.970 | 66 | 32 | 2 | 15 | 78 | 115 | 179 | 6.63e-12 | 58.9 |
MS.gene030509.t1 | MTR_3g070110 | 45.070 | 71 | 32 | 1 | 15 | 78 | 97 | 167 | 8.32e-12 | 58.5 |
MS.gene030509.t1 | MTR_8g072990 | 42.593 | 54 | 31 | 0 | 6 | 59 | 93 | 146 | 9.09e-11 | 56.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030509.t1 | AT5G47390 | 77.612 | 67 | 15 | 0 | 14 | 80 | 97 | 163 | 3.29e-34 | 120 |
MS.gene030509.t1 | AT1G49010 | 71.014 | 69 | 20 | 0 | 10 | 78 | 131 | 199 | 1.69e-30 | 109 |
MS.gene030509.t1 | AT1G70000 | 82.609 | 69 | 12 | 0 | 13 | 81 | 98 | 166 | 1.45e-29 | 105 |
MS.gene030509.t1 | AT1G70000 | 82.609 | 69 | 12 | 0 | 13 | 81 | 98 | 166 | 1.45e-29 | 105 |
MS.gene030509.t1 | AT5G08520 | 66.667 | 69 | 23 | 0 | 10 | 78 | 115 | 183 | 1.84e-29 | 106 |
MS.gene030509.t1 | AT5G61620 | 64.179 | 67 | 24 | 0 | 14 | 80 | 109 | 175 | 1.04e-28 | 105 |
MS.gene030509.t1 | AT5G56840 | 68.182 | 66 | 20 | 1 | 13 | 77 | 91 | 156 | 1.07e-28 | 103 |
MS.gene030509.t1 | AT2G38090 | 66.667 | 66 | 22 | 0 | 13 | 78 | 141 | 206 | 3.81e-28 | 103 |
MS.gene030509.t1 | AT5G58900 | 66.667 | 66 | 22 | 0 | 13 | 78 | 141 | 206 | 6.65e-28 | 102 |
MS.gene030509.t1 | AT5G04760 | 62.162 | 74 | 28 | 0 | 5 | 78 | 91 | 164 | 1.18e-27 | 100 |
MS.gene030509.t1 | AT1G19000 | 82.609 | 69 | 12 | 0 | 13 | 81 | 102 | 170 | 1.13e-26 | 99.0 |
MS.gene030509.t1 | AT1G19000 | 82.609 | 69 | 12 | 0 | 13 | 81 | 102 | 170 | 1.13e-26 | 99.0 |
MS.gene030509.t1 | AT1G74840 | 82.609 | 69 | 12 | 0 | 13 | 81 | 96 | 164 | 3.87e-26 | 96.7 |
MS.gene030509.t1 | AT1G74840 | 82.609 | 69 | 12 | 0 | 13 | 81 | 96 | 164 | 4.01e-26 | 97.1 |
MS.gene030509.t1 | AT3G16350 | 73.529 | 68 | 18 | 0 | 13 | 80 | 137 | 204 | 6.45e-26 | 98.6 |
MS.gene030509.t1 | AT5G01200 | 62.121 | 66 | 25 | 0 | 13 | 78 | 146 | 211 | 1.35e-24 | 93.2 |
MS.gene030509.t1 | AT5G05790 | 60.870 | 69 | 27 | 0 | 10 | 78 | 128 | 196 | 4.15e-24 | 92.0 |
MS.gene030509.t1 | AT5G05790 | 60.870 | 69 | 27 | 0 | 10 | 78 | 128 | 196 | 4.15e-24 | 92.0 |
MS.gene030509.t1 | AT3G11280 | 62.121 | 66 | 25 | 0 | 13 | 78 | 127 | 192 | 1.36e-23 | 90.5 |
MS.gene030509.t1 | AT3G11280 | 62.121 | 66 | 25 | 0 | 13 | 78 | 127 | 192 | 1.36e-23 | 90.5 |
MS.gene030509.t1 | AT3G10580 | 56.716 | 67 | 27 | 1 | 13 | 79 | 95 | 159 | 2.53e-21 | 85.1 |
MS.gene030509.t1 | AT4G09450 | 54.286 | 70 | 32 | 0 | 10 | 79 | 88 | 157 | 2.90e-21 | 83.2 |
MS.gene030509.t1 | AT3G10580 | 56.716 | 67 | 27 | 1 | 13 | 79 | 95 | 159 | 7.24e-21 | 83.2 |
MS.gene030509.t1 | AT5G23650 | 55.714 | 70 | 31 | 0 | 10 | 79 | 117 | 186 | 6.78e-20 | 81.6 |
MS.gene030509.t1 | AT3G10590 | 50.000 | 68 | 33 | 1 | 14 | 81 | 112 | 178 | 1.28e-18 | 76.3 |
Find 21 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGAATGTGGCTTACATGATC+GGG | 0.431194 | 4.2:+7646213 | None:intergenic |
TTGGTTGGATTGGAGAAAGT+GGG | 0.463944 | 4.2:-7645418 | MS.gene030509:CDS |
GGGAATGTGGCTTACATGAT+CGG | 0.480428 | 4.2:+7646212 | None:intergenic |
AGAAAGTGGGAAAAGGTGAT+TGG | 0.482958 | 4.2:-7645405 | MS.gene030509:CDS |
GATGGTGATATCAAAGAGAC+TGG | 0.526759 | 4.2:+7645273 | None:intergenic |
TTTGGTTGGATTGGAGAAAG+TGG | 0.531455 | 4.2:-7645419 | MS.gene030509:CDS |
GGATTGGAGAAAGTGGGAAA+AGG | 0.562648 | 4.2:-7645412 | MS.gene030509:CDS |
TTGTGCTCTTCCTCAGTCCA+CGG | 0.578432 | 4.2:+7645448 | None:intergenic |
TATCAAAGAGACTGGATCTA+CGG | 0.592657 | 4.2:+7645281 | None:intergenic |
GTGATTGGAGAGGAATCTCA+AGG | 0.619264 | 4.2:-7645390 | MS.gene030509:CDS |
GTGGGAAAAGGTGATTGGAG+AGG | 0.624127 | 4.2:-7645400 | MS.gene030509:CDS |
TGAATGGATCAGGGATTCCG+TGG | 0.626840 | 4.2:-7645465 | MS.gene030509:intron |
GGCGATTGAGATTACTTCGG+CGG | 0.629813 | 4.2:+7645308 | None:intergenic |
TGACATGGAATGGTGTTGCT+CGG | 0.634157 | 4.2:-7646247 | None:intergenic |
GCATGACTTGCAACATGCGT+AGG | 0.636946 | 4.2:+7645346 | None:intergenic |
GACGGCGATTGAGATTACTT+CGG | 0.641222 | 4.2:+7645305 | None:intergenic |
CTTTGATATCACCATCGACA+CGG | 0.646904 | 4.2:-7645266 | MS.gene030509:intron |
ATCAGGGATTCCGTGGACTG+AGG | 0.660333 | 4.2:-7645458 | MS.gene030509:intron |
GAATGTGGCTTACATGATCG+GGG | 0.660918 | 4.2:+7646214 | None:intergenic |
AGAGACTGGATCTACGGCGA+CGG | 0.684123 | 4.2:+7645287 | None:intergenic |
AATGTGGCTTACATGATCGG+GGG | 0.708447 | 4.2:+7646215 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAGAATATAATAGTTTAA+GGG | + | chr4.2:7644185-7644204 | None:intergenic | 10.0% |
!! | AAAGAATATAATAGTTTAAG+GGG | + | chr4.2:7644184-7644203 | None:intergenic | 15.0% |
!! | AACTAATTGAATACAAATTT+AGG | + | chr4.2:7645180-7645199 | None:intergenic | 15.0% |
!! | AATAAGAAAGAAATAATGTT+TGG | + | chr4.2:7645911-7645930 | None:intergenic | 15.0% |
!! | AGTATTTCTTATAATATGTA+TGG | - | chr4.2:7646199-7646218 | MS.gene030509:intron | 15.0% |
!! | CAAAAATAATAAAAATTGGA+TGG | + | chr4.2:7644350-7644369 | None:intergenic | 15.0% |
!! | CTTGCAAAAATAATAAAAAT+TGG | + | chr4.2:7644354-7644373 | None:intergenic | 15.0% |
!! | GAAAAGAATATAATAGTTTA+AGG | + | chr4.2:7644186-7644205 | None:intergenic | 15.0% |
!!! | AATTTTCTCTGTTATTTTTT+TGG | - | chr4.2:7645244-7645263 | MS.gene030509:intron | 15.0% |
!!! | ATTTTGTATTATAAACCTAA+AGG | + | chr4.2:7645400-7645419 | None:intergenic | 15.0% |
!!! | TAATCAATAAAGTAGTATTT+TGG | - | chr4.2:7645202-7645221 | MS.gene030509:intron | 15.0% |
!!! | TCTTATTTGAATTTTATTCA+TGG | - | chr4.2:7645858-7645877 | MS.gene030509:intron | 15.0% |
!!! | TTAAGTCATTCATTTTTAAA+TGG | - | chr4.2:7645473-7645492 | MS.gene030509:intron | 15.0% |
!! | AAGTGATTCATTTGTTTAAA+TGG | - | chr4.2:7645360-7645379 | MS.gene030509:CDS | 20.0% |
!! | AATACTCTAAATTAAGCATA+AGG | + | chr4.2:7646185-7646204 | None:intergenic | 20.0% |
!! | AGAAATTTGAACTATTGTAA+AGG | - | chr4.2:7645319-7645338 | MS.gene030509:CDS | 20.0% |
!! | ATTTCAATCAATTCAAACAA+AGG | + | chr4.2:7644858-7644877 | None:intergenic | 20.0% |
!! | CAATAGTTCAAATTTCTAAA+TGG | + | chr4.2:7645316-7645335 | None:intergenic | 20.0% |
!! | TATTGAACCAAAAATATTCA+TGG | + | chr4.2:7644294-7644313 | None:intergenic | 20.0% |
!!! | AGATTTTTTTTGAAGAACAT+TGG | - | chr4.2:7646069-7646088 | MS.gene030509:intron | 20.0% |
!!! | TGTTATTGATTTTCTTTGAA+TGG | - | chr4.2:7644892-7644911 | MS.gene030509:intron | 20.0% |
!!! | TTATAGACCATGAATATTTT+TGG | - | chr4.2:7644284-7644303 | MS.gene030509:intron | 20.0% |
! | AAAGCTACAAATTCAACTTA+CGG | + | chr4.2:7645527-7645546 | None:intergenic | 25.0% |
! | AATATCTACTTAAAATCCTG+AGG | + | chr4.2:7644707-7644726 | None:intergenic | 25.0% |
! | GTTCAATATTAATTGTGTCT+TGG | - | chr4.2:7644306-7644325 | MS.gene030509:intron | 25.0% |
! | TTACAAATTCAATGTAGCTA+GGG | + | chr4.2:7645439-7645458 | None:intergenic | 25.0% |
!! | TCTCACATTTAAATGGTTTT+TGG | - | chr4.2:7644763-7644782 | MS.gene030509:intron | 25.0% |
!!! | ATTAGTGCTGTTATTTTTCA+TGG | - | chr4.2:7645604-7645623 | MS.gene030509:intron | 25.0% |
!!! | TGTATGGTTTTTTTAATTGC+AGG | - | chr4.2:7646215-7646234 | MS.gene030509:intron | 25.0% |
AAGTAAAGCCTTGAATCATT+TGG | - | chr4.2:7645668-7645687 | MS.gene030509:intron | 30.0% | |
AATGCAGCACAATTCAAAAT+TGG | + | chr4.2:7644559-7644578 | None:intergenic | 30.0% | |
ACATGTGCACAAACTTTAAT+TGG | - | chr4.2:7644622-7644641 | MS.gene030509:intron | 30.0% | |
AGGTCATTAGTACATATTGT+TGG | - | chr4.2:7645832-7645851 | MS.gene030509:intron | 30.0% | |
ATAACTACATCTTATGCAAG+AGG | - | chr4.2:7644646-7644665 | MS.gene030509:intron | 30.0% | |
ATAATAGTTTAAGGGGAATG+TGG | + | chr4.2:7644177-7644196 | None:intergenic | 30.0% | |
ATGTACTAATGACCTATCAA+AGG | + | chr4.2:7645827-7645846 | None:intergenic | 30.0% | |
CAAATTGACAAAAAACACAC+AGG | + | chr4.2:7644493-7644512 | None:intergenic | 30.0% | |
CTACATGTCTCACATTTAAA+TGG | - | chr4.2:7644756-7644775 | MS.gene030509:intron | 30.0% | |
CTTACAAATTCAATGTAGCT+AGG | + | chr4.2:7645440-7645459 | None:intergenic | 30.0% | |
GTGCTGCATTATTCATTTAT+GGG | - | chr4.2:7644569-7644588 | MS.gene030509:intron | 30.0% | |
GTTCATTATGTTAGTCCTTT+AGG | - | chr4.2:7645382-7645401 | MS.gene030509:CDS | 30.0% | |
TACAAATTCAACTTACGGTA+AGG | + | chr4.2:7645522-7645541 | None:intergenic | 30.0% | |
TCTGTTTAGAAAGCTATTTG+TGG | - | chr4.2:7646130-7646149 | MS.gene030509:intron | 30.0% | |
TGTGCTGCATTATTCATTTA+TGG | - | chr4.2:7644568-7644587 | MS.gene030509:intron | 30.0% | |
TTTAATCTTTCATCTCTAGC+AGG | - | chr4.2:7644388-7644407 | MS.gene030509:intron | 30.0% | |
! | GATTTTCTTTGAATGGATCA+GGG | - | chr4.2:7644899-7644918 | MS.gene030509:intron | 30.0% |
! | TGATTTTCTTTGAATGGATC+AGG | - | chr4.2:7644898-7644917 | MS.gene030509:intron | 30.0% |
! | TTTGTACCTTTTACTACTGT+TGG | - | chr4.2:7645569-7645588 | MS.gene030509:intron | 30.0% |
!!! | ACTCTGCAACAAACATTTTT+TGG | + | chr4.2:7644439-7644458 | None:intergenic | 30.0% |
!!! | GTTTTTTGTCAATTTGCTTC+TGG | - | chr4.2:7644497-7644516 | MS.gene030509:intron | 30.0% |
AAATTCAACTTACGGTAAGG+TGG | + | chr4.2:7645519-7645538 | None:intergenic | 35.0% | |
AATTCAACTTACGGTAAGGT+GGG | + | chr4.2:7645518-7645537 | None:intergenic | 35.0% | |
ACAAAAAACACACAGGATAG+GGG | + | chr4.2:7644486-7644505 | None:intergenic | 35.0% | |
CACCAAATAGTACCTTTGAT+AGG | - | chr4.2:7645812-7645831 | MS.gene030509:intron | 35.0% | |
CATTAAAGGTTGTTTACCTC+AGG | - | chr4.2:7644688-7644707 | MS.gene030509:intron | 35.0% | |
GACAAAAAACACACAGGATA+GGG | + | chr4.2:7644487-7644506 | None:intergenic | 35.0% | |
GATGGAGCAAATTGAAACAA+AGG | + | chr4.2:7644332-7644351 | None:intergenic | 35.0% | |
TACGAACCAACAGTAGTAAA+AGG | + | chr4.2:7645578-7645597 | None:intergenic | 35.0% | |
TATCAAAGAGACTGGATCTA+CGG | + | chr4.2:7645095-7645114 | None:intergenic | 35.0% | |
TCACTTGGATTGAGCATTAA+AGG | - | chr4.2:7644674-7644693 | MS.gene030509:intron | 35.0% | |
TCCATGCTACATGTCATTAA+TGG | + | chr4.2:7645709-7645728 | None:intergenic | 35.0% | |
TCCATTAATGACATGTAGCA+TGG | - | chr4.2:7645705-7645724 | MS.gene030509:intron | 35.0% | |
TGACAAAAAACACACAGGAT+AGG | + | chr4.2:7644488-7644507 | None:intergenic | 35.0% | |
!! | AAGGTACTATTTGGTGCATA+AGG | + | chr4.2:7645808-7645827 | None:intergenic | 35.0% |
!! | CAATTTGCTTCTGGTTTGTA+AGG | - | chr4.2:7644506-7644525 | MS.gene030509:intron | 35.0% |
!! | GACCTATCAAAGGTACTATT+TGG | + | chr4.2:7645817-7645836 | None:intergenic | 35.0% |
!! | TAGCAGGTTTGTTACTTACA+AGG | - | chr4.2:7644529-7644548 | MS.gene030509:intron | 35.0% |
!!! | CAAGATGTTTTTGGTTGGAT+TGG | - | chr4.2:7644945-7644964 | MS.gene030509:intron | 35.0% |
!!! | CATCGACACGGTAATTTTTT+CGG | - | chr4.2:7645119-7645138 | MS.gene030509:intron | 35.0% |
AGAAAGTGGGAAAAGGTGAT+TGG | - | chr4.2:7644968-7644987 | MS.gene030509:intron | 40.0% | |
ATGCAAGAGGAACTTTCACT+TGG | - | chr4.2:7644659-7644678 | MS.gene030509:intron | 40.0% | |
ATTCAACTTACGGTAAGGTG+GGG | + | chr4.2:7645517-7645536 | None:intergenic | 40.0% | |
CAAAAAACACACAGGATAGG+GGG | + | chr4.2:7644485-7644504 | None:intergenic | 40.0% | |
CATTCTCTCTGAGCAAACAA+TGG | - | chr4.2:7644733-7644752 | MS.gene030509:intron | 40.0% | |
CGAAAAAATTACCGTGTCGA+TGG | + | chr4.2:7645121-7645140 | None:intergenic | 40.0% | |
CTTTGATATCACCATCGACA+CGG | - | chr4.2:7645107-7645126 | MS.gene030509:intron | 40.0% | |
GAATGAAGATCCTGCAAACT+TGG | - | chr4.2:7645769-7645788 | MS.gene030509:intron | 40.0% | |
GATGGTGATATCAAAGAGAC+TGG | + | chr4.2:7645103-7645122 | None:intergenic | 40.0% | |
GCAGTACACCAAATGATTCA+AGG | + | chr4.2:7645679-7645698 | None:intergenic | 40.0% | |
TCAAATCCAACCAAGTTTGC+AGG | + | chr4.2:7645782-7645801 | None:intergenic | 40.0% | |
TCAAATCTAGCTGCATGGTT+GGG | - | chr4.2:7645999-7646018 | MS.gene030509:intron | 40.0% | |
TGACTTCAAATCTAGCTGCA+TGG | - | chr4.2:7645994-7646013 | MS.gene030509:intron | 40.0% | |
TGTAGCTAGGGACTTTCATT+AGG | + | chr4.2:7645427-7645446 | None:intergenic | 40.0% | |
TTCAAATCTAGCTGCATGGT+TGG | - | chr4.2:7645998-7646017 | MS.gene030509:intron | 40.0% | |
! | CTGTTATCAAAAGTGTGCGA+AGG | + | chr4.2:7645887-7645906 | None:intergenic | 40.0% |
! | TTGGTTGGATTGGAGAAAGT+GGG | - | chr4.2:7644955-7644974 | MS.gene030509:intron | 40.0% |
! | TTTGGTTGGATTGGAGAAAG+TGG | - | chr4.2:7644954-7644973 | MS.gene030509:intron | 40.0% |
!! | GGAAGAGCACAAGATGTTTT+TGG | - | chr4.2:7644936-7644955 | MS.gene030509:intron | 40.0% |
!!! | GAGCACAAGATGTTTTTGGT+TGG | - | chr4.2:7644940-7644959 | MS.gene030509:intron | 40.0% |
AATGTGGCTTACATGATCGG+GGG | + | chr4.2:7644161-7644180 | None:intergenic | 45.0% | |
GAAGATCCTGCAAACTTGGT+TGG | - | chr4.2:7645773-7645792 | MS.gene030509:intron | 45.0% | |
GAATGTGGCTTACATGATCG+GGG | + | chr4.2:7644162-7644181 | None:intergenic | 45.0% | |
GACGGCGATTGAGATTACTT+CGG | + | chr4.2:7645071-7645090 | None:intergenic | 45.0% | |
GGAATGTGGCTTACATGATC+GGG | + | chr4.2:7644163-7644182 | None:intergenic | 45.0% | |
GGATTGGAGAAAGTGGGAAA+AGG | - | chr4.2:7644961-7644980 | MS.gene030509:intron | 45.0% | |
GGGAATGTGGCTTACATGAT+CGG | + | chr4.2:7644164-7644183 | None:intergenic | 45.0% | |
GTGATTGGAGAGGAATCTCA+AGG | - | chr4.2:7644983-7645002 | MS.gene030509:intron | 45.0% | |
TTACATGATCGGGGGATTGA+TGG | + | chr4.2:7644153-7644172 | None:intergenic | 45.0% | |
!! | CTTCTGGTTTGTAAGGTAGC+AGG | - | chr4.2:7644513-7644532 | MS.gene030509:intron | 45.0% |
GGCGATTGAGATTACTTCGG+CGG | + | chr4.2:7645068-7645087 | None:intergenic | 50.0% | |
GGCTGAGAAGAGACTGCTAT+TGG | - | chr4.2:7644590-7644609 | MS.gene030509:intron | 50.0% | |
GTGGGAAAAGGTGATTGGAG+AGG | - | chr4.2:7644973-7644992 | MS.gene030509:intron | 50.0% | |
TGAATGGATCAGGGATTCCG+TGG | - | chr4.2:7644908-7644927 | MS.gene030509:intron | 50.0% | |
TTGTGCTCTTCCTCAGTCCA+CGG | + | chr4.2:7644928-7644947 | None:intergenic | 50.0% | |
! | GCATGACTTGCAACATGCGT+AGG | + | chr4.2:7645030-7645049 | None:intergenic | 50.0% |
AGAGACTGGATCTACGGCGA+CGG | + | chr4.2:7645089-7645108 | None:intergenic | 55.0% | |
! | ATCAGGGATTCCGTGGACTG+AGG | - | chr4.2:7644915-7644934 | MS.gene030509:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 7644135 | 7646260 | 7644135 | ID=MS.gene030509 |
chr4.2 | mRNA | 7644135 | 7646260 | 7644135 | ID=MS.gene030509.t1;Parent=MS.gene030509 |
chr4.2 | exon | 7646227 | 7646260 | 7646227 | ID=MS.gene030509.t1.exon1;Parent=MS.gene030509.t1 |
chr4.2 | CDS | 7646227 | 7646260 | 7646227 | ID=cds.MS.gene030509.t1;Parent=MS.gene030509.t1 |
chr4.2 | exon | 7645267 | 7645475 | 7645267 | ID=MS.gene030509.t1.exon2;Parent=MS.gene030509.t1 |
chr4.2 | CDS | 7645267 | 7645475 | 7645267 | ID=cds.MS.gene030509.t1;Parent=MS.gene030509.t1 |
chr4.2 | exon | 7644135 | 7644158 | 7644135 | ID=MS.gene030509.t1.exon3;Parent=MS.gene030509.t1 |
chr4.2 | CDS | 7644135 | 7644158 | 7644135 | ID=cds.MS.gene030509.t1;Parent=MS.gene030509.t1 |
Gene Sequence |
Protein sequence |