AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030539

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030539.t1 MTR_8g095390 89.308 318 28 3 1 318 1 312 5.58e-171 477
MS.gene030539.t1 MTR_3g097450 49.351 308 99 7 1 284 1 275 1.71e-89 270
MS.gene030539.t1 MTR_4g073420 46.708 319 127 9 1 314 1 281 1.56e-85 259
MS.gene030539.t1 MTR_5g079670 61.644 146 51 1 3 148 2 142 1.04e-65 206
MS.gene030539.t1 MTR_7g110830 57.862 159 67 0 1 159 1 159 1.07e-64 208
MS.gene030539.t1 MTR_4g105130 42.629 251 118 3 1 225 1 251 3.12e-64 207
MS.gene030539.t1 MTR_7g076740 65.672 134 45 1 1 133 1 134 5.44e-64 204
MS.gene030539.t1 MTR_1g085040 68.217 129 41 0 1 129 1 129 9.33e-64 206
MS.gene030539.t1 MTR_1g085640 52.247 178 78 1 1 178 1 171 1.36e-63 206
MS.gene030539.t1 MTR_4g091490 66.667 129 42 1 1 128 1 129 3.78e-63 204
MS.gene030539.t1 MTR_2g011660 67.442 129 41 1 1 128 1 129 6.26e-63 203
MS.gene030539.t1 MTR_2g089620 67.969 128 41 0 1 128 1 128 1.28e-62 202
MS.gene030539.t1 MTR_3g074520 63.636 132 48 0 1 132 1 132 1.55e-62 202
MS.gene030539.t1 MTR_4g478180 66.406 128 43 0 1 128 2 129 2.05e-62 202
MS.gene030539.t1 MTR_7g011170 65.625 128 44 0 1 128 1 128 4.73e-62 199
MS.gene030539.t1 MTR_4g082290 49.746 197 96 1 1 197 1 194 5.08e-62 202
MS.gene030539.t1 MTR_4g102380 65.891 129 44 0 1 129 1 129 9.60e-62 197
MS.gene030539.t1 MTR_4g082230 49.746 197 96 1 1 197 1 194 1.13e-61 202
MS.gene030539.t1 MTR_5g029840 66.406 128 43 0 1 128 1 128 1.82e-61 199
MS.gene030539.t1 MTR_3g077110 65.891 129 44 0 1 129 1 129 2.78e-61 199
MS.gene030539.t1 MTR_5g078140 62.590 139 51 1 1 139 1 138 5.80e-61 197
MS.gene030539.t1 MTR_8g031360 57.233 159 66 2 1 157 1 159 6.33e-61 196
MS.gene030539.t1 MTR_1g112760 55.414 157 59 1 3 159 4 149 1.27e-60 193
MS.gene030539.t1 MTR_3g065440 61.268 142 52 1 1 142 1 139 6.62e-60 194
MS.gene030539.t1 MTR_6g012690 55.346 159 69 1 1 157 1 159 1.10e-59 195
MS.gene030539.t1 MTR_7g111290 68.217 129 41 0 1 129 1 129 1.55e-59 195
MS.gene030539.t1 MTR_4g485530 64.000 125 44 1 3 126 2 126 4.75e-59 188
MS.gene030539.t1 MTR_3g083540 48.947 190 88 2 5 185 34 223 2.50e-58 190
MS.gene030539.t1 MTR_1g076150 58.278 151 59 1 1 151 1 147 4.16e-58 188
MS.gene030539.t1 MTR_1g100653 67.241 116 38 0 1 116 1 116 1.20e-57 188
MS.gene030539.t1 MTR_2g099740 59.859 142 54 1 1 142 1 139 6.02e-57 189
MS.gene030539.t1 MTR_8g017540 52.469 162 73 1 1 162 47 204 6.92e-57 189
MS.gene030539.t1 MTR_8g017440 52.761 163 72 2 1 162 1 159 7.34e-57 187
MS.gene030539.t1 MTR_5g007370 60.938 128 50 0 1 128 1 128 2.04e-56 185
MS.gene030539.t1 MTR_2g034790 51.648 182 74 4 1 178 1 172 2.09e-56 186
MS.gene030539.t1 MTR_4g121460 68.376 117 37 0 1 117 1 117 2.19e-56 186
MS.gene030539.t1 MTR_7g117730 67.241 116 38 0 1 116 1 116 4.16e-56 182
MS.gene030539.t1 MTR_1g043080 55.333 150 67 0 1 150 1 150 4.40e-56 182
MS.gene030539.t1 MTR_3g461490 54.902 153 68 1 1 153 1 152 4.59e-56 185
MS.gene030539.t1 MTR_8g017500 51.852 162 74 1 1 162 1 158 8.80e-56 185
MS.gene030539.t1 MTR_2g064160 62.903 124 46 0 6 129 5 128 1.60e-55 183
MS.gene030539.t1 MTR_4g125520 66.379 116 39 0 1 116 1 116 1.74e-55 182
MS.gene030539.t1 MTR_6g009430 52.980 151 68 1 1 151 1 148 2.97e-55 183
MS.gene030539.t1 MTR_8g027345 66.379 116 39 0 1 116 1 116 4.56e-55 181
MS.gene030539.t1 MTR_7g115650 55.862 145 63 1 1 145 1 144 4.89e-54 176
MS.gene030539.t1 MTR_1g043050 53.247 154 71 1 1 154 1 153 5.47e-54 177
MS.gene030539.t1 MTR_7g096930 65.517 116 40 0 1 116 1 116 2.07e-53 176
MS.gene030539.t1 MTR_8g098860 64.655 116 41 0 1 116 1 116 2.24e-53 177
MS.gene030539.t1 MTR_8g017340 62.400 125 46 1 1 124 1 125 9.62e-53 181
MS.gene030539.t1 MTR_7g109320 64.662 133 46 1 1 132 1 133 1.88e-52 176
MS.gene030539.t1 MTR_8g017390 51.534 163 73 2 1 162 1 158 2.26e-52 179
MS.gene030539.t1 MTR_5g010020 66.364 110 37 0 1 110 1 110 1.39e-51 174
MS.gene030539.t1 MTR_8g017350 61.600 125 47 1 1 124 1 125 2.80e-51 179
MS.gene030539.t1 MTR_0008s0280 64.035 114 41 0 1 114 1 114 3.09e-51 169
MS.gene030539.t1 MTR_2g067420 67.273 110 36 0 2 111 4 113 2.36e-50 170
MS.gene030539.t1 MTR_0140s0030 62.069 116 44 0 1 116 2 117 5.14e-50 169
MS.gene030539.t1 MTR_0489s0020 62.069 116 44 0 1 116 2 117 5.14e-50 169
MS.gene030539.t1 MTR_2g089450 62.069 116 44 0 1 116 1 116 6.01e-50 167
MS.gene030539.t1 MTR_0251s0050 60.684 117 45 1 1 116 1 117 7.11e-50 167
MS.gene030539.t1 MTR_3g103570 39.744 234 130 3 1 226 1 231 7.90e-50 169
MS.gene030539.t1 MTR_0063s0090 55.882 136 56 1 1 132 1 136 8.36e-50 165
MS.gene030539.t1 MTR_2g097910 66.990 103 34 0 14 116 22 124 9.05e-50 168
MS.gene030539.t1 MTR_7g010210 59.483 116 47 0 1 116 1 116 9.90e-50 168
MS.gene030539.t1 MTR_1g017000 57.983 119 49 1 1 118 1 119 1.12e-49 166
MS.gene030539.t1 MTR_7g010210 59.483 116 47 0 1 116 1 116 1.33e-49 166
MS.gene030539.t1 MTR_5g042030 64.348 115 41 0 14 128 9 123 1.83e-49 166
MS.gene030539.t1 MTR_7g087130 58.730 126 50 1 1 124 1 126 2.92e-49 167
MS.gene030539.t1 MTR_5g014990 44.286 210 97 5 1 197 1 203 3.39e-49 166
MS.gene030539.t1 MTR_4g065017 66.990 103 34 0 14 116 19 121 6.92e-49 166
MS.gene030539.t1 MTR_0008s0390 55.882 136 54 3 1 134 1 132 7.10e-49 164
MS.gene030539.t1 MTR_4g057635 57.252 131 54 2 1 130 1 130 1.12e-48 166
MS.gene030539.t1 MTR_1g017140 48.750 160 81 1 1 159 1 160 2.16e-48 165
MS.gene030539.t1 MTR_0008s0470 59.483 116 46 1 1 115 1 116 3.31e-48 163
MS.gene030539.t1 MTR_1g100667 56.489 131 55 2 1 130 1 130 4.37e-48 162
MS.gene030539.t1 MTR_7g102110 58.824 119 48 1 1 118 1 119 1.23e-47 161
MS.gene030539.t1 MTR_3g039990 59.483 116 47 0 1 116 2 117 2.27e-47 162
MS.gene030539.t1 MTR_3g028740 62.963 108 40 0 9 116 19 126 3.39e-47 162
MS.gene030539.t1 MTR_6g090405 50.340 147 70 3 1 146 1 145 9.85e-47 158
MS.gene030539.t1 MTR_6g055910 44.809 183 87 3 7 186 9 180 1.06e-46 159
MS.gene030539.t1 MTR_2g095520 62.162 111 41 1 1 110 1 111 3.74e-46 159
MS.gene030539.t1 MTR_7g035075 61.017 118 44 1 1 116 1 118 1.48e-45 154
MS.gene030539.t1 MTR_6g006030 61.017 118 44 1 1 116 1 118 2.03e-45 154
MS.gene030539.t1 MTR_2g089420 57.759 116 48 1 1 116 1 115 6.42e-45 159
MS.gene030539.t1 MTR_4g097570 61.818 110 41 1 1 109 1 110 9.25e-45 154
MS.gene030539.t1 MTR_6g012180 57.658 111 47 0 1 111 1 111 1.05e-44 155
MS.gene030539.t1 MTR_4g128670 61.261 111 42 1 1 110 1 111 1.26e-43 153
MS.gene030539.t1 MTR_1g073170 61.111 108 42 0 8 115 16 123 1.42e-43 150
MS.gene030539.t1 MTR_8g020490 56.897 116 46 1 1 116 1 112 2.58e-43 149
MS.gene030539.t1 MTR_4g097570 61.261 111 41 2 1 109 1 111 3.26e-43 150
MS.gene030539.t1 MTR_4g100720 57.944 107 45 0 9 115 10 116 5.65e-43 146
MS.gene030539.t1 MTR_1g045610 59.091 110 45 0 6 115 15 124 6.60e-43 149
MS.gene030539.t1 MTR_8g042410 63.725 102 37 0 14 115 39 140 7.17e-43 155
MS.gene030539.t1 MTR_1g110460 56.522 115 50 0 8 122 22 136 1.13e-42 149
MS.gene030539.t1 MTR_3g052430 62.745 102 38 0 14 115 43 144 2.18e-42 154
MS.gene030539.t1 MTR_0197s0010 47.059 153 78 2 16 165 5 157 4.08e-42 145
MS.gene030539.t1 MTR_3g052450 57.377 122 42 2 14 125 42 163 5.55e-42 152
MS.gene030539.t1 MTR_5g079120 42.767 159 90 1 9 166 58 216 1.84e-41 146
MS.gene030539.t1 MTR_1g062940 61.165 103 40 0 14 116 8 110 2.21e-41 143
MS.gene030539.t1 MTR_1g086530 52.101 119 57 0 14 132 35 153 1.68e-40 143
MS.gene030539.t1 MTR_1g086510 61.765 102 39 0 14 115 23 124 2.74e-40 142
MS.gene030539.t1 MTR_3g011610 57.843 102 43 0 14 115 39 140 7.66e-40 146
MS.gene030539.t1 MTR_7g017260 42.331 163 87 3 14 174 27 184 1.01e-38 138
MS.gene030539.t1 MTR_5g079290 42.308 156 85 1 14 169 19 169 1.01e-38 138
MS.gene030539.t1 MTR_5g079220 50.442 113 56 0 7 119 16 128 1.63e-38 137
MS.gene030539.t1 MTR_4g063100 54.808 104 47 0 12 115 7 110 1.96e-38 137
MS.gene030539.t1 MTR_1g021230 59.804 102 41 0 14 115 59 160 3.79e-38 140
MS.gene030539.t1 MTR_2g096380 42.953 149 79 2 9 154 3 148 8.47e-38 134
MS.gene030539.t1 MTR_5g078800 53.774 106 49 0 14 119 9 114 1.17e-37 135
MS.gene030539.t1 MTR_7g111290 70.930 86 25 0 44 129 2 87 4.92e-37 135
MS.gene030539.t1 MTR_0247s0040 56.000 100 44 0 14 113 9 108 5.49e-37 130
MS.gene030539.t1 MTR_2g033170 62.376 101 38 0 14 114 26 126 5.57e-37 135
MS.gene030539.t1 MTR_1g083630 51.667 120 52 1 14 127 14 133 6.75e-37 139
MS.gene030539.t1 MTR_3g045430 46.617 133 70 1 1 132 1 133 7.84e-37 134
MS.gene030539.t1 MTR_0001s0360 53.774 106 49 0 14 119 9 114 2.31e-36 131
MS.gene030539.t1 MTR_5g078930 53.271 107 50 0 14 120 11 117 5.96e-36 129
MS.gene030539.t1 MTR_5g078910 52.381 105 50 0 14 118 9 113 6.02e-36 131
MS.gene030539.t1 MTR_5g062790 53.097 113 51 2 12 123 9 120 1.76e-35 130
MS.gene030539.t1 MTR_5g078860 52.830 106 50 0 14 119 9 114 4.17e-35 129
MS.gene030539.t1 MTR_4g123040 60.396 101 40 0 14 114 26 126 9.17e-35 129
MS.gene030539.t1 MTR_5g078950 53.000 100 47 0 14 113 9 108 1.07e-34 127
MS.gene030539.t1 MTR_5g088080 52.212 113 52 2 12 123 12 123 1.09e-34 127
MS.gene030539.t1 MTR_5g088150 52.212 113 52 2 12 123 12 123 1.09e-34 127
MS.gene030539.t1 MTR_5g488210 52.212 113 52 2 12 123 12 123 1.09e-34 127
MS.gene030539.t1 MTR_5g488170 52.212 113 52 2 12 123 12 123 1.11e-34 127
MS.gene030539.t1 MTR_2g088170 58.824 102 42 0 14 115 31 132 1.16e-34 131
MS.gene030539.t1 MTR_8g060940 54.545 99 45 0 14 112 9 107 1.25e-34 126
MS.gene030539.t1 MTR_5g088640 52.212 113 52 2 12 123 12 123 1.72e-34 127
MS.gene030539.t1 MTR_0193s0090 50.485 103 51 0 14 116 9 111 2.57e-34 125
MS.gene030539.t1 MTR_6g055910 44.138 145 67 3 45 186 18 151 4.12e-33 123
MS.gene030539.t1 MTR_8g006470 50.000 108 53 1 8 114 6 113 1.98e-32 122
MS.gene030539.t1 MTR_5g007300 57.955 88 37 0 1 88 53 140 1.18e-31 115
MS.gene030539.t1 MTR_5g016510 44.872 156 84 2 14 169 5 158 2.14e-31 120
MS.gene030539.t1 MTR_4g063100 65.753 73 25 0 43 115 9 81 2.32e-31 117
MS.gene030539.t1 MTR_4g019370 40.437 183 97 4 14 195 38 209 4.14e-31 120
MS.gene030539.t1 MTR_4g029540 45.528 123 64 2 8 127 6 128 4.79e-30 115
MS.gene030539.t1 MTR_2g096380 47.826 115 54 2 43 154 18 129 9.94e-30 113
MS.gene030539.t1 MTR_5g088610 50.442 113 54 2 12 123 9 120 2.12e-29 115
MS.gene030539.t1 MTR_5g070020 47.170 106 54 2 14 119 122 225 3.22e-29 115
MS.gene030539.t1 MTR_4g128190 51.402 107 37 3 14 119 13 105 3.22e-28 109
MS.gene030539.t1 MTR_4g094982 45.070 142 68 3 14 149 5 142 4.15e-28 110
MS.gene030539.t1 MTR_3g463400 45.283 106 56 2 14 119 133 236 8.75e-28 112
MS.gene030539.t1 MTR_5g049190 35.366 164 102 3 14 175 19 180 8.07e-27 106
MS.gene030539.t1 MTR_7g035350 33.486 218 128 6 11 228 222 422 1.33e-26 109
MS.gene030539.t1 MTR_7g037260 44.643 112 57 2 8 115 135 245 3.20e-26 107
MS.gene030539.t1 MTR_6g015455 34.661 251 144 8 14 262 5 237 3.24e-26 109
MS.gene030539.t1 MTR_3g101290 50.000 102 50 1 14 115 37 137 3.56e-26 103
MS.gene030539.t1 MTR_4g105660 48.598 107 51 3 14 119 180 283 4.10e-26 107
MS.gene030539.t1 MTR_7g451170 43.750 112 58 2 8 115 181 291 4.45e-26 107
MS.gene030539.t1 MTR_1g085880 44.800 125 67 2 17 140 17 140 5.43e-26 102
MS.gene030539.t1 MTR_3g077650 32.979 188 100 5 3 167 168 352 1.33e-25 106
MS.gene030539.t1 MTR_7g061330 44.860 107 50 2 14 116 113 214 1.39e-25 107
MS.gene030539.t1 MTR_7g461410 44.860 107 50 2 14 116 113 214 1.39e-25 107
MS.gene030539.t1 MTR_4g088015 44.554 101 55 1 14 114 221 320 2.67e-25 105
MS.gene030539.t1 MTR_7g061330 44.860 107 50 2 14 116 77 178 2.86e-25 106
MS.gene030539.t1 MTR_1g085770 44.800 125 67 2 17 140 17 140 3.73e-25 103
MS.gene030539.t1 MTR_5g082910 49.495 99 49 1 14 112 19 116 5.51e-25 102
MS.gene030539.t1 MTR_1g057980 45.631 103 54 2 14 116 80 180 2.94e-24 100
MS.gene030539.t1 MTR_3g110028 42.857 105 59 1 14 118 85 188 3.13e-24 103
MS.gene030539.t1 MTR_1g026870 43.810 105 58 1 14 118 85 188 5.44e-24 103
MS.gene030539.t1 MTR_6g074860 39.344 122 65 3 14 129 4 122 1.86e-23 97.1
MS.gene030539.t1 MTR_7g450950 41.509 106 60 2 11 116 154 257 4.71e-22 95.1
MS.gene030539.t1 MTR_5g010650 45.833 96 51 1 14 109 110 204 7.95e-22 95.9
MS.gene030539.t1 MTR_7g037130 39.669 121 65 3 7 120 134 253 9.82e-22 94.4
MS.gene030539.t1 MTR_3g089045 45.098 102 55 1 14 115 16 116 3.84e-21 91.7
MS.gene030539.t1 MTR_4g082040 39.130 115 64 2 2 116 98 206 4.24e-21 93.6
MS.gene030539.t1 MTR_5g041570 41.748 103 59 1 14 116 134 235 5.30e-21 93.2
MS.gene030539.t1 MTR_7g061550 30.978 184 103 4 13 172 6 189 1.91e-20 90.9
MS.gene030539.t1 MTR_6g027340 39.175 97 58 1 14 110 16 111 1.92e-20 87.8
MS.gene030539.t1 MTR_7g086960 32.984 191 112 5 1 182 81 264 3.74e-20 90.1
MS.gene030539.t1 MTR_6g027360 38.235 102 62 1 14 115 78 178 4.45e-20 89.0
MS.gene030539.t1 MTR_6g027370 33.333 156 101 2 14 169 99 251 1.00e-19 88.6
MS.gene030539.t1 MTR_0023s0210 44.000 75 42 0 14 88 9 83 6.49e-19 80.1
MS.gene030539.t1 MTR_6g055910 38.983 118 57 4 72 186 5 110 4.08e-17 79.0
MS.gene030539.t1 MTR_8g017480 59.615 52 21 0 1 52 1 52 3.73e-15 68.9
MS.gene030539.t1 MTR_5g038910 35.354 99 63 1 17 115 29 126 9.12e-15 75.1
MS.gene030539.t1 MTR_4g063100 60.870 46 18 0 70 115 1 46 2.71e-14 70.5
MS.gene030539.t1 MTR_5g038910 35.354 99 63 1 17 115 29 126 2.83e-14 73.2
MS.gene030539.t1 MTR_8g468380 36.364 99 61 2 17 114 25 122 3.03e-14 73.2
MS.gene030539.t1 MTR_2g096380 41.667 84 43 2 74 154 5 85 3.89e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030539.t1 AT4G38620 76.510 149 34 1 1 149 1 148 1.50e-81 249
MS.gene030539.t1 AT2G16720 82.171 129 23 0 1 129 1 129 7.32e-81 246
MS.gene030539.t1 AT4G09460 63.483 178 50 2 1 176 1 165 2.12e-78 239
MS.gene030539.t1 AT4G34990 67.296 159 44 1 1 159 1 151 3.06e-78 240
MS.gene030539.t1 AT1G22640 79.070 129 27 0 1 129 1 129 2.60e-77 237
MS.gene030539.t1 AT1G35515 78.571 126 27 0 1 126 1 126 5.09e-74 227
MS.gene030539.t1 AT4G12350 49.495 198 90 2 1 198 1 188 2.39e-66 210
MS.gene030539.t1 AT5G26660 60.248 161 61 1 1 161 1 158 6.45e-66 211
MS.gene030539.t1 AT5G16770 67.188 128 42 0 1 128 1 128 1.51e-65 209
MS.gene030539.t1 AT5G16770 67.188 128 42 0 1 128 1 128 1.51e-65 209
MS.gene030539.t1 AT3G02940 68.750 128 40 0 1 128 1 128 3.77e-65 207
MS.gene030539.t1 AT5G16770 67.188 128 42 0 1 128 1 128 4.35e-65 208
MS.gene030539.t1 AT5G16770 67.188 128 42 0 1 128 1 128 4.35e-65 208
MS.gene030539.t1 AT1G57560 54.688 192 78 2 1 183 1 192 4.73e-65 206
MS.gene030539.t1 AT4G21440 62.162 148 53 1 1 145 1 148 4.97e-65 209
MS.gene030539.t1 AT1G57560 54.696 181 80 2 1 181 1 179 5.09e-65 207
MS.gene030539.t1 AT3G02940 68.750 128 40 0 1 128 1 128 1.01e-64 207
MS.gene030539.t1 AT3G02940 68.750 128 40 0 1 128 1 128 1.01e-64 207
MS.gene030539.t1 AT4G22680 68.992 129 40 0 1 129 1 129 1.07e-64 205
MS.gene030539.t1 AT4G28110 57.500 160 68 0 1 160 1 160 2.53e-64 204
MS.gene030539.t1 AT1G09540 56.395 172 74 1 1 171 1 172 1.05e-63 206
MS.gene030539.t1 AT4G05100 68.217 129 40 1 1 128 1 129 4.24e-63 203
MS.gene030539.t1 AT3G61250 57.516 153 65 0 1 153 1 153 4.79e-63 202
MS.gene030539.t1 AT5G15310 51.053 190 85 3 1 185 1 187 1.23e-62 199
MS.gene030539.t1 AT4G01680 51.232 203 88 3 1 203 1 192 1.33e-62 199
MS.gene030539.t1 AT5G15310 51.053 190 85 3 1 185 1 187 4.64e-62 200
MS.gene030539.t1 AT5G15310 51.053 190 85 3 1 185 1 187 6.67e-62 200
MS.gene030539.t1 AT4G01680 66.667 132 44 0 1 132 1 132 1.15e-61 199
MS.gene030539.t1 AT5G07690 64.341 129 46 0 1 129 1 129 3.20e-61 198
MS.gene030539.t1 AT3G01140 51.075 186 82 1 1 186 1 177 5.53e-61 198
MS.gene030539.t1 AT1G34670 63.636 132 48 0 1 132 1 132 6.36e-61 199
MS.gene030539.t1 AT1G74080 55.280 161 70 1 1 161 1 159 1.00e-60 197
MS.gene030539.t1 AT5G16600 59.589 146 59 0 1 146 1 146 1.98e-60 196
MS.gene030539.t1 AT5G61420 63.566 129 47 0 1 129 1 129 2.21e-60 197
MS.gene030539.t1 AT5G60890 62.791 129 48 0 1 129 1 129 3.08e-60 194
MS.gene030539.t1 AT1G66230 63.566 129 47 0 1 129 1 129 6.69e-60 193
MS.gene030539.t1 AT3G13540 63.492 126 46 0 4 129 15 140 9.88e-60 192
MS.gene030539.t1 AT1G18570 64.615 130 45 1 1 129 1 130 1.06e-59 195
MS.gene030539.t1 AT5G65230 64.844 128 45 0 1 128 1 128 2.08e-59 193
MS.gene030539.t1 AT4G17785 64.341 129 45 1 1 128 1 129 2.12e-59 194
MS.gene030539.t1 AT5G10280 60.938 128 50 0 1 128 1 128 2.24e-59 194
MS.gene030539.t1 AT4G17785 64.341 129 45 1 1 128 1 129 2.34e-59 194
MS.gene030539.t1 AT5G07700 62.016 129 49 0 1 129 1 129 8.50e-59 192
MS.gene030539.t1 AT5G07700 62.016 129 49 0 1 129 1 129 8.50e-59 192
MS.gene030539.t1 AT4G01680 62.411 141 41 1 1 129 1 141 3.11e-58 191
MS.gene030539.t1 AT3G01140 50.273 183 82 1 4 186 47 220 5.92e-58 191
MS.gene030539.t1 AT5G62320 61.654 133 44 1 2 127 3 135 2.06e-57 186
MS.gene030539.t1 AT5G49330 67.797 118 38 0 1 118 1 118 5.43e-57 187
MS.gene030539.t1 AT3G23250 48.677 189 84 3 1 183 1 182 6.22e-57 186
MS.gene030539.t1 AT2G47460 61.429 140 54 0 1 140 1 140 1.06e-56 188
MS.gene030539.t1 AT5G14340 59.398 133 54 0 1 133 13 145 1.16e-56 185
MS.gene030539.t1 AT5G54230 65.625 128 44 0 1 128 1 128 1.61e-56 186
MS.gene030539.t1 AT3G13890 66.949 118 39 0 1 118 1 118 3.72e-56 186
MS.gene030539.t1 AT5G56110 59.091 132 54 0 1 132 1 132 5.14e-56 184
MS.gene030539.t1 AT3G62610 53.750 160 69 1 1 160 1 155 5.33e-56 185
MS.gene030539.t1 AT1G06180 51.667 180 80 2 1 180 1 173 8.09e-56 182
MS.gene030539.t1 AT3G12720 62.810 121 45 0 6 126 16 136 8.41e-56 184
MS.gene030539.t1 AT2G31180 54.088 159 62 1 1 148 1 159 7.37e-55 179
MS.gene030539.t1 AT1G16490 54.605 152 59 1 2 153 4 145 2.87e-54 179
MS.gene030539.t1 AT1G79180 67.826 115 37 0 2 116 4 118 9.47e-54 178
MS.gene030539.t1 AT1G63910 55.705 149 58 1 1 149 1 141 1.48e-53 179
MS.gene030539.t1 AT3G13890 62.205 127 39 1 1 118 1 127 4.89e-53 178
MS.gene030539.t1 AT3G28470 50.000 164 81 1 1 164 1 163 1.57e-52 175
MS.gene030539.t1 AT3G12820 65.812 117 40 0 3 119 5 121 5.37e-52 171
MS.gene030539.t1 AT1G56160 64.348 115 41 0 2 116 4 118 2.98e-51 171
MS.gene030539.t1 AT1G74430 55.639 133 59 0 1 133 1 133 3.93e-51 170
MS.gene030539.t1 AT1G74650 62.931 116 43 0 1 116 1 116 3.08e-50 170
MS.gene030539.t1 AT2G36890 48.876 178 76 2 1 177 1 164 3.54e-49 166
MS.gene030539.t1 AT3G47600 60.345 116 46 0 1 116 1 116 6.47e-49 166
MS.gene030539.t1 AT5G14750 45.304 181 89 3 14 194 18 188 7.11e-49 162
MS.gene030539.t1 AT2G36890 48.876 178 76 2 1 177 42 205 1.16e-48 166
MS.gene030539.t1 AT5G62470 61.207 116 45 0 1 116 1 116 1.27e-48 166
MS.gene030539.t1 AT1G08810 62.069 116 44 0 1 116 1 116 1.83e-48 164
MS.gene030539.t1 AT4G37780 60.833 120 46 1 1 119 1 120 4.09e-48 164
MS.gene030539.t1 AT5G57620 59.167 120 48 1 1 119 1 120 4.73e-48 164
MS.gene030539.t1 AT5G23000 59.829 117 46 1 1 116 1 117 1.35e-47 163
MS.gene030539.t1 AT3G28910 55.039 129 56 1 1 129 1 127 1.62e-47 162
MS.gene030539.t1 AT5G65790 57.500 120 50 1 1 119 1 120 3.72e-47 163
MS.gene030539.t1 AT1G79180 52.703 148 37 1 2 116 4 151 4.36e-47 161
MS.gene030539.t1 AT5G62470 61.207 116 44 1 1 116 1 115 4.58e-47 162
MS.gene030539.t1 AT5G12870 65.049 103 36 0 14 116 20 122 6.42e-47 160
MS.gene030539.t1 AT3G08500 64.078 103 37 0 14 116 32 134 9.42e-47 161
MS.gene030539.t1 AT3G49690 57.500 120 50 1 1 119 1 120 1.25e-46 160
MS.gene030539.t1 AT3G01530 48.148 162 82 1 14 175 27 186 5.32e-46 155
MS.gene030539.t1 AT5G40330 56.881 109 46 1 9 116 8 116 3.37e-45 153
MS.gene030539.t1 AT3G27810 52.448 143 55 2 14 156 22 151 3.94e-44 151
MS.gene030539.t1 AT5G40350 50.350 143 71 0 14 156 19 161 4.24e-44 150
MS.gene030539.t1 AT5G35550 59.259 108 44 0 9 116 11 118 6.49e-44 151
MS.gene030539.t1 AT3G27920 52.500 120 54 1 8 124 10 129 9.90e-44 150
MS.gene030539.t1 AT3G11440 62.745 102 38 0 14 115 43 144 2.42e-43 155
MS.gene030539.t1 AT5G26660 59.829 117 44 1 45 161 14 127 2.87e-43 151
MS.gene030539.t1 AT1G18710 46.032 189 81 3 1 188 1 169 4.99e-43 149
MS.gene030539.t1 AT5G55020 63.107 103 38 0 14 116 28 130 5.79e-43 155
MS.gene030539.t1 AT3G11440 62.745 102 38 0 14 115 43 144 9.48e-43 155
MS.gene030539.t1 AT3G11440 62.745 102 38 0 14 115 43 144 9.48e-43 155
MS.gene030539.t1 AT3G11440 62.745 102 38 0 14 115 43 144 9.48e-43 155
MS.gene030539.t1 AT3G48920 58.491 106 44 0 9 114 15 120 1.04e-42 148
MS.gene030539.t1 AT3G24310 63.725 102 37 0 14 115 20 121 2.36e-42 147
MS.gene030539.t1 AT4G13480 64.706 102 36 0 14 115 8 109 2.60e-42 147
MS.gene030539.t1 AT1G25340 38.967 213 115 5 14 221 20 222 6.80e-42 147
MS.gene030539.t1 AT4G26930 62.376 101 38 0 14 114 21 121 8.08e-42 149
MS.gene030539.t1 AT2G26960 42.541 181 88 3 9 173 17 197 9.13e-42 150
MS.gene030539.t1 AT4G25560 62.745 102 38 0 14 115 12 113 9.85e-42 146
MS.gene030539.t1 AT5G06100 60.784 102 40 0 14 115 34 135 1.44e-41 150
MS.gene030539.t1 AT5G52260 58.261 115 48 0 1 115 1 115 3.06e-41 144
MS.gene030539.t1 AT5G06100 60.784 102 40 0 14 115 34 135 4.62e-41 150
MS.gene030539.t1 AT5G06100 60.784 102 40 0 14 115 34 135 4.62e-41 150
MS.gene030539.t1 AT5G06100 60.784 102 40 0 14 115 34 135 4.62e-41 150
MS.gene030539.t1 AT5G06100 60.784 102 40 0 14 115 34 135 4.62e-41 150
MS.gene030539.t1 AT2G32460 59.804 102 41 0 14 115 20 121 6.40e-41 149
MS.gene030539.t1 AT5G52600 41.176 170 91 1 9 169 9 178 6.71e-41 142
MS.gene030539.t1 AT2G32460 59.804 102 41 0 14 115 8 109 6.76e-41 149
MS.gene030539.t1 AT2G47190 40.415 193 95 3 8 180 16 208 1.66e-40 143
MS.gene030539.t1 AT1G68320 59.804 102 41 0 14 115 21 122 6.33e-40 142
MS.gene030539.t1 AT1G48000 58.416 101 42 0 14 114 34 134 9.20e-40 140
MS.gene030539.t1 AT3G30210 61.386 101 39 0 14 114 29 129 1.23e-39 140
MS.gene030539.t1 AT3G53200 60.784 102 40 0 14 115 11 112 2.79e-39 139
MS.gene030539.t1 AT5G49620 48.077 156 69 1 8 151 22 177 2.83e-38 138
MS.gene030539.t1 AT5G59780 54.206 107 49 0 9 115 5 111 3.26e-38 135
MS.gene030539.t1 AT3G46130 53.704 108 50 0 8 115 5 112 4.89e-38 136
MS.gene030539.t1 AT3G06490 56.303 119 52 0 14 132 21 139 9.69e-38 137
MS.gene030539.t1 AT1G25340 37.559 213 113 6 14 221 20 217 2.67e-37 134
MS.gene030539.t1 AT1G25340 37.559 213 113 6 14 221 20 217 4.99e-37 135
MS.gene030539.t1 AT1G22640 79.167 72 15 0 58 129 1 72 6.01e-37 131
MS.gene030539.t1 AT5G14750 45.161 155 72 4 40 194 13 154 3.27e-36 128
MS.gene030539.t1 AT1G66370 51.304 115 52 1 1 115 1 111 5.95e-36 130
MS.gene030539.t1 AT5G49620 44.118 170 69 2 8 151 22 191 1.21e-34 129
MS.gene030539.t1 AT1G66380 56.863 102 44 0 14 115 10 111 1.81e-33 120
MS.gene030539.t1 AT2G26950 44.882 127 65 2 9 131 13 138 3.58e-33 126
MS.gene030539.t1 AT3G12820 73.611 72 19 0 48 119 2 73 3.68e-33 121
MS.gene030539.t1 AT1G56650 55.882 102 45 0 14 115 10 111 4.58e-32 120
MS.gene030539.t1 AT1G66390 55.882 102 45 0 14 115 10 111 4.74e-32 120
MS.gene030539.t1 AT3G60460 49.541 109 54 1 7 114 6 114 1.43e-31 120
MS.gene030539.t1 AT5G35550 63.636 77 28 0 40 116 45 121 5.76e-31 117
MS.gene030539.t1 AT3G47600 66.667 72 24 0 45 116 39 110 1.70e-30 118
MS.gene030539.t1 AT3G27810 50.893 112 42 2 45 156 4 102 1.86e-30 114
MS.gene030539.t1 AT3G53200 67.606 71 23 0 45 115 9 79 2.73e-30 114
MS.gene030539.t1 AT3G46130 66.667 72 24 0 44 115 9 80 3.07e-30 114
MS.gene030539.t1 AT5G40350 47.321 112 59 0 45 156 5 116 4.24e-30 112
MS.gene030539.t1 AT5G59780 67.606 71 23 0 45 115 20 90 4.69e-30 114
MS.gene030539.t1 AT3G46130 67.606 71 23 0 45 115 20 90 6.72e-30 114
MS.gene030539.t1 AT3G09230 41.243 177 88 5 14 185 55 220 1.24e-29 117
MS.gene030539.t1 AT1G71030 44.526 137 71 3 51 183 5 140 7.79e-29 109
MS.gene030539.t1 AT5G40360 43.220 118 65 2 1 118 145 260 8.63e-29 114
MS.gene030539.t1 AT5G67300 41.463 164 85 5 14 172 6 163 8.85e-29 112
MS.gene030539.t1 AT1G71030 44.526 137 71 3 51 183 19 154 1.17e-28 109
MS.gene030539.t1 AT3G50060 49.020 102 51 1 14 115 6 106 4.42e-27 108
MS.gene030539.t1 AT3G23250 43.939 132 61 3 58 183 1 125 4.80e-27 106
MS.gene030539.t1 AT3G27785 47.170 106 54 2 14 119 189 292 5.47e-27 110
MS.gene030539.t1 AT3G55730 53.398 103 45 2 14 115 56 156 1.05e-26 108
MS.gene030539.t1 AT5G58850 44.118 102 56 1 14 115 105 205 1.13e-26 109
MS.gene030539.t1 AT5G14750 47.619 105 49 2 58 162 1 99 1.24e-26 102
MS.gene030539.t1 AT5G14750 47.619 105 49 2 58 162 1 99 1.24e-26 102
MS.gene030539.t1 AT4G18770 44.340 106 58 1 14 119 217 321 1.92e-26 108
MS.gene030539.t1 AT4G37260 43.262 141 66 3 14 141 13 152 2.14e-26 106
MS.gene030539.t1 AT2G23290 50.980 102 49 1 14 115 13 113 2.67e-26 106
MS.gene030539.t1 AT2G39880 50.980 102 49 1 14 115 50 150 3.47e-26 107
MS.gene030539.t1 AT1G18960 43.220 118 60 4 14 129 10 122 4.25e-26 105
MS.gene030539.t1 AT5G02320 44.660 103 56 1 14 116 127 228 8.40e-26 107
MS.gene030539.t1 AT5G02320 44.660 103 56 1 14 116 127 228 8.40e-26 107
MS.gene030539.t1 AT4G32730 30.556 216 127 5 14 225 87 283 1.28e-25 107
MS.gene030539.t1 AT4G32730 30.556 216 127 5 14 225 87 283 1.28e-25 107
MS.gene030539.t1 AT4G32730 30.556 216 127 5 14 225 87 283 1.28e-25 107
MS.gene030539.t1 AT4G32730 30.556 216 127 5 14 225 87 283 1.28e-25 107
MS.gene030539.t1 AT4G32730 30.556 216 127 5 14 225 87 283 1.41e-25 107
MS.gene030539.t1 AT5G02320 44.660 103 56 1 14 116 67 168 1.51e-25 106
MS.gene030539.t1 AT5G11050 43.137 102 57 1 14 115 105 205 3.19e-25 105
MS.gene030539.t1 AT3G09370 44.340 106 50 2 14 115 130 230 1.84e-24 103
MS.gene030539.t1 AT3G09370 44.340 106 50 2 14 115 135 235 2.00e-24 103
MS.gene030539.t1 AT3G09370 37.580 157 84 3 14 161 143 294 2.22e-24 103
MS.gene030539.t1 AT1G66380 59.722 72 29 0 44 115 7 78 4.11e-24 95.1
MS.gene030539.t1 AT5G11510 41.905 105 60 1 14 118 81 184 1.56e-23 101
MS.gene030539.t1 AT5G11510 33.654 104 67 2 10 112 25 127 8.99e-12 66.6
MS.gene030539.t1 AT5G11510 41.905 105 60 1 14 118 81 184 1.56e-23 101
MS.gene030539.t1 AT5G11510 33.654 104 67 2 10 112 25 127 8.99e-12 66.6
MS.gene030539.t1 AT5G11510 41.905 105 60 1 14 118 81 184 1.56e-23 101
MS.gene030539.t1 AT5G11510 33.654 104 67 2 10 112 25 127 8.99e-12 66.6
MS.gene030539.t1 AT5G11510 41.905 105 60 1 14 118 81 184 2.08e-23 101
MS.gene030539.t1 AT5G11510 33.654 104 67 2 10 112 25 127 9.39e-12 66.2
MS.gene030539.t1 AT5G11510 41.905 105 60 1 14 118 81 184 2.17e-23 101
MS.gene030539.t1 AT5G11510 33.654 104 67 2 10 112 25 127 9.72e-12 66.2
MS.gene030539.t1 AT1G17950 42.105 114 59 2 14 121 5 117 4.77e-23 96.3
MS.gene030539.t1 AT2G25230 39.316 117 70 1 4 120 16 131 1.84e-22 94.4
MS.gene030539.t1 AT1G69560 40.741 108 63 1 9 116 118 224 5.14e-22 95.1
MS.gene030539.t1 AT1G69560 40.741 108 63 1 9 116 102 208 5.71e-22 94.7
MS.gene030539.t1 AT5G17800 38.462 130 77 2 14 143 93 219 2.99e-21 92.8
MS.gene030539.t1 AT1G26780 27.778 252 149 6 14 257 98 324 3.07e-21 93.2
MS.gene030539.t1 AT1G26780 42.157 102 58 1 14 115 98 198 3.64e-21 91.7
MS.gene030539.t1 AT4G33450 37.168 113 65 2 3 115 13 119 1.02e-20 89.7
MS.gene030539.t1 AT1G73410 44.660 103 54 2 14 115 6 106 1.03e-20 89.7
MS.gene030539.t1 AT1G73410 44.660 103 54 2 14 115 6 106 1.76e-20 88.2
MS.gene030539.t1 AT3G29020 38.835 103 62 1 14 116 67 168 3.23e-20 89.4
MS.gene030539.t1 AT3G29020 38.835 103 62 1 14 116 65 166 3.94e-20 87.8
MS.gene030539.t1 AT4G00540 43.396 106 56 2 14 116 103 207 4.33e-20 90.5
MS.gene030539.t1 AT4G00540 43.396 106 56 2 14 116 101 205 8.51e-20 89.7
MS.gene030539.t1 AT4G00540 32.432 111 67 3 10 112 40 150 5.72e-12 66.6
MS.gene030539.t1 AT1G66380 50.633 79 39 0 14 92 10 88 7.23e-19 80.9
MS.gene030539.t1 AT5G61420 71.429 49 14 0 81 129 2 50 7.45e-19 85.5
MS.gene030539.t1 AT5G40430 36.036 111 69 2 4 114 44 152 1.04e-17 81.6
MS.gene030539.t1 AT1G22640 76.190 42 10 0 88 129 16 57 1.30e-16 77.0
MS.gene030539.t1 AT2G37630 41.667 96 54 1 17 110 7 102 2.59e-16 79.3
MS.gene030539.t1 AT2G02820 38.384 99 60 1 17 115 33 130 5.10e-16 79.0
MS.gene030539.t1 AT5G39700 37.000 100 62 1 15 114 57 155 5.38e-16 75.5
MS.gene030539.t1 AT2G02820 38.384 99 60 1 17 115 33 130 6.83e-16 78.6
MS.gene030539.t1 AT2G02820 38.384 99 60 1 17 115 33 130 1.94e-15 76.3
MS.gene030539.t1 AT5G59780 63.043 46 17 0 70 115 1 46 3.51e-15 72.8
MS.gene030539.t1 AT4G25560 67.442 43 14 0 73 115 5 47 3.78e-15 73.6
MS.gene030539.t1 AT3G46130 56.140 57 23 1 70 124 1 57 5.31e-15 72.8
MS.gene030539.t1 AT1G14350 37.374 99 61 1 17 115 28 125 6.84e-15 75.5
MS.gene030539.t1 AT1G14350 37.374 99 61 1 17 115 28 125 6.84e-15 75.5
MS.gene030539.t1 AT4G28110 68.293 41 13 0 88 128 4 44 8.67e-15 72.4
MS.gene030539.t1 AT5G15310 40.777 103 53 3 88 185 9 108 4.72e-14 71.2
MS.gene030539.t1 AT3G28910 52.830 53 23 1 77 129 1 51 5.89e-13 68.2
MS.gene030539.t1 AT1G74650 65.000 40 14 0 77 116 1 40 2.65e-12 66.2
MS.gene030539.t1 AT1G74430 47.368 57 30 0 77 133 8 64 3.41e-12 65.1
MS.gene030539.t1 AT3G18100 36.792 106 61 2 12 117 544 643 5.66e-12 67.0
MS.gene030539.t1 AT5G14340 54.348 46 21 0 88 133 10 55 7.13e-12 63.9
MS.gene030539.t1 AT3G18100 31.757 148 87 4 12 159 383 516 7.27e-12 66.6
MS.gene030539.t1 AT3G18100 31.757 148 87 4 12 159 496 629 7.49e-12 66.6
MS.gene030539.t1 AT3G18100 31.973 147 86 4 12 158 331 463 1.04e-11 66.2

Find 85 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGTCGTCAAATATCTTT+AGG 0.182062 4.2:-7911392 MS.gene030539:CDS
GATCTCATTGTCTGTTCTTC+CGG 0.221330 4.2:+7911886 None:intergenic
ATCTCATTGTCTGTTCTTCC+GGG 0.278170 4.2:+7911887 None:intergenic
TAATATATACCTGCGGCTTT+AGG 0.298964 4.2:+7912374 None:intergenic
AATCAACTTGGAACTTTCAT+TGG 0.322311 4.2:-7911465 MS.gene030539:CDS
GTTGTTTGATGTAGTTAATA+AGG 0.342784 4.2:+7912423 None:intergenic
TTGAGTGGCTGATGTGTTGT+AGG 0.350899 4.2:+7911809 None:intergenic
AACAACAAGGTGAAGGTTGC+TGG 0.363863 4.2:-7912406 MS.gene030539:CDS
AATGAAAGTTCCAAGTTGAT+TGG 0.369039 4.2:+7911467 None:intergenic
TTTGTCGTCAAATATCTTTA+GGG 0.370282 4.2:-7911391 MS.gene030539:CDS
GGCGCCGCTGCCGCTTCAGC+CGG 0.372168 4.2:-7911776 MS.gene030539:CDS
ACAATGAGATCAAGAACTAT+TGG 0.386834 4.2:-7911874 MS.gene030539:CDS
AAGGCGTTCATCTTCTTCCT+TGG 0.409969 4.2:+7912442 None:intergenic
GGCTGAAGCGGCAGCGGCGC+CGG 0.415460 4.2:+7911778 None:intergenic
AAAGCTTGTGGCTGTGGCTG+TGG 0.425390 4.2:+7911419 None:intergenic
AAGTTTCCACGTTTAAGATC+AGG 0.434602 4.2:+7912194 None:intergenic
AGTACTGCTCTCGTTGGTTG+AGG 0.444995 4.2:+7911667 None:intergenic
GCAGTAACAGCAGAAGAAGT+TGG 0.449986 4.2:+7911308 None:intergenic
AGAAGCTGCTTCTCCTTCAA+TGG 0.455907 4.2:-7911726 MS.gene030539:CDS
TTCCCGACGCCGGTGGTAGC+AGG 0.460111 4.2:+7911278 None:intergenic
TCTTAATCTTGTTGTGGTGG+TGG 0.469641 4.2:+7911630 None:intergenic
GTTGCAACTGATTCTGTCCA+TGG 0.469860 4.2:-7911557 MS.gene030539:CDS
ACGCCGGTGGTAGCAGGTGG+TGG 0.472661 4.2:+7911284 None:intergenic
CAAATATCTTTAGGGTTACA+TGG 0.477003 4.2:-7911383 MS.gene030539:CDS
GCTACCACCGGCGTCGGGAA+TGG 0.480018 4.2:-7911275 MS.gene030539:CDS
TGTGGCTGTGGCTGTTGAGA+GGG 0.480183 4.2:+7911431 None:intergenic
TTATTATTAACAACCATTGA+AGG 0.483862 4.2:+7911713 None:intergenic
AGCGGCAGCGGCGCCGGAGA+GGG 0.484893 4.2:+7911784 None:intergenic
CTGTGGCTGTGGCTGTTGAG+AGG 0.489452 4.2:+7911430 None:intergenic
CACCTGCTACCACCGGCGTC+GGG 0.491522 4.2:-7911280 MS.gene030539:CDS
TCAGTAATTTCAGTGGCTCT+CGG 0.500245 4.2:-7911592 MS.gene030539:CDS
AGAAGCAGCTTCTGCGGAGG+TGG 0.515199 4.2:+7911736 None:intergenic
AGTACCGGCTGAAGCGGCAG+CGG 0.515809 4.2:+7911772 None:intergenic
AGACACAAAGCTTGTGGCTG+TGG 0.517881 4.2:+7911413 None:intergenic
CACTCTTAATCTTGTTGTGG+TGG 0.527882 4.2:+7911627 None:intergenic
CAGCCACTCAAAACCCTCTC+CGG 0.529029 4.2:-7911797 MS.gene030539:CDS
AGTTCCAAGTTGATTGGAGG+AGG 0.529728 4.2:+7911473 None:intergenic
GAAAGTTCCAAGTTGATTGG+AGG 0.531148 4.2:+7911470 None:intergenic
TGAGGGTACTACAGGTAATA+CGG 0.532096 4.2:+7911685 None:intergenic
TATCATTAGCCTCCACGCTA+TGG 0.539507 4.2:-7912150 MS.gene030539:CDS
GTACTGCTCTCGTTGGTTGA+GGG 0.539997 4.2:+7911668 None:intergenic
CAATCAAAACTTGACAATCC+CGG 0.540131 4.2:+7911232 None:intergenic
TATTGCAGCAACAAGGTTGG+TGG 0.541765 4.2:+7911354 None:intergenic
TCGTTGGTTGAGGGTACTAC+AGG 0.542515 4.2:+7911677 None:intergenic
TGCGGAGGTGGTTGTTGCTG+AGG 0.545243 4.2:+7911748 None:intergenic
AAGCGGCAGCGGCGCCGGAG+AGG 0.551698 4.2:+7911783 None:intergenic
AACACACAAACAAAGGTGCT+TGG 0.551791 4.2:-7912466 MS.gene030539:CDS
CGTTCTCTTCCTAAAGCCGC+AGG 0.552268 4.2:-7912383 MS.gene030539:intron
ATTAGCCTCCACGCTATGGT+TGG 0.553340 4.2:-7912146 MS.gene030539:CDS
CCACCTGCTACCACCGGCGT+CGG 0.562507 4.2:-7911281 MS.gene030539:CDS
CTGTGGCTGTTGAGAGGGAG+AGG 0.563461 4.2:+7911436 None:intergenic
AACACAGGCTTGGCAAGATG+TGG 0.575098 4.2:-7912254 MS.gene030539:intron
AAACTTGACAATCCCGGCCC+CGG 0.577725 4.2:+7911238 None:intergenic
TGAGGAAGTACCGGCTGAAG+CGG 0.577777 4.2:+7911766 None:intergenic
TATTATTGCAGCAACAAGGT+TGG 0.582196 4.2:+7911351 None:intergenic
ACTCACTCTTAATCTTGTTG+TGG 0.587928 4.2:+7911624 None:intergenic
AAACAAAGGTGCTTGGTCCA+AGG 0.588189 4.2:-7912459 MS.gene030539:CDS
TTATCCTCCTCCAATCAACT+TGG 0.588353 4.2:-7911477 MS.gene030539:CDS
CAGTTATTCAGTAATTTCAG+TGG 0.590300 4.2:-7911599 MS.gene030539:CDS
GCTCCACCACCTGCTACCAC+CGG 0.597086 4.2:-7911287 MS.gene030539:CDS
CTCAGACCTGATCTTAAACG+TGG 0.598711 4.2:-7912200 MS.gene030539:CDS
AAACGCAAACTCTATAGCCG+TGG 0.599125 4.2:-7911839 MS.gene030539:CDS
TGAAGGAGAAGCAGCTTCTG+CGG 0.602575 4.2:+7911730 None:intergenic
GGTTGTTGCTGAGGAAGTAC+CGG 0.604216 4.2:+7911757 None:intergenic
TACATCAAACAACAAGGTGA+AGG 0.620127 4.2:-7912413 MS.gene030539:CDS
ATGGTATTATTGCAGCAACA+AGG 0.622111 4.2:+7911347 None:intergenic
ACTTGTTTCCAACCATAGCG+TGG 0.623181 4.2:+7912138 None:intergenic
TAGCAGTGGTGTTACCGTTG+AGG 0.625555 4.2:-7911507 MS.gene030539:CDS
CCGACGCCGGTGGTAGCAGG+TGG 0.625901 4.2:+7911281 None:intergenic
GCTACTAGTACTGCTCTCGT+TGG 0.626573 4.2:+7911661 None:intergenic
GAAGTTGGAACACCAACGAT+AGG 0.627451 4.2:+7911323 None:intergenic
TCAGTTTCAAACAGTAGCAG+TGG 0.628636 4.2:-7911521 MS.gene030539:CDS
AATAATACCATGCCTATCGT+TGG 0.630120 4.2:-7911335 MS.gene030539:CDS
CGACAAAGACACAAAGCTTG+TGG 0.633649 4.2:+7911407 None:intergenic
AGGATAAGCTATATCCTCAA+CGG 0.643736 4.2:+7911493 None:intergenic
CTGATTCTTCAACACCACCA+TGG 0.645930 4.2:+7911540 None:intergenic
AAAACCATTCCCGACGCCGG+TGG 0.648900 4.2:+7911271 None:intergenic
GTGTTGTAGGATCAATTCCA+CGG 0.654495 4.2:+7911822 None:intergenic
TGGAACACCAACGATAGGCA+TGG 0.666214 4.2:+7911328 None:intergenic
AGGAGAAGCAGCTTCTGCGG+AGG 0.667672 4.2:+7911733 None:intergenic
ACAGCAAGGAGATCTACCCA+TGG 0.704613 4.2:+7912496 None:intergenic
GCAACTGATTCTGTCCATGG+TGG 0.713175 4.2:-7911554 MS.gene030539:CDS
ATTAACTACATCAAACAACA+AGG 0.716458 4.2:-7912419 MS.gene030539:CDS
ACGTGGAAACTTCACTCACG+AGG 0.718536 4.2:-7912183 MS.gene030539:CDS
TGTTTCCAACCATAGCGTGG+AGG 0.719128 4.2:+7912141 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAGCAAAATGAATAAA+CGG + chr4.2:7911434-7911453 None:intergenic 15.0%
!! ATAATATTAATATATACCTG+CGG + chr4.2:7911365-7911384 None:intergenic 15.0%
!!! ATTTGATAGAATATGATTTT+TGG + chr4.2:7911682-7911701 None:intergenic 15.0%
!!! TTTGATAGAATATGATTTTT+GGG + chr4.2:7911681-7911700 None:intergenic 15.0%
!! TTATTATTAACAACCATTGA+AGG + chr4.2:7912019-7912038 None:intergenic 20.0%
!!! AATGGTTTTTTCAAATTTTC+CGG - chr4.2:7912472-7912491 MS.gene030539:CDS 20.0%
! ATGATTACAGAATTACATGA+AGG + chr4.2:7911762-7911781 None:intergenic 25.0%
! ATTAACTACATCAAACAACA+AGG - chr4.2:7911310-7911329 MS.gene030539:CDS 25.0%
! GTTGTTTGATGTAGTTAATA+AGG + chr4.2:7911309-7911328 None:intergenic 25.0%
! TTTGTCGTCAAATATCTTTA+GGG - chr4.2:7912338-7912357 MS.gene030539:intron 25.0%
!!! AAAATGAATAAACGGATTGT+GGG + chr4.2:7911426-7911445 None:intergenic 25.0%
!!! ATGGTTTTTTCAAATTTTCC+GGG - chr4.2:7912473-7912492 MS.gene030539:CDS 25.0%
!!! GATTATGTTTTGTTTTCAGA+TGG - chr4.2:7911798-7911817 MS.gene030539:CDS 25.0%
AATCAACTTGGAACTTTCAT+TGG - chr4.2:7912264-7912283 MS.gene030539:intron 30.0%
ACAATGAGATCAAGAACTAT+TGG - chr4.2:7911855-7911874 MS.gene030539:CDS 30.0%
CAGTTATTCAGTAATTTCAG+TGG - chr4.2:7912130-7912149 MS.gene030539:intron 30.0%
CTTTGTCGTCAAATATCTTT+AGG - chr4.2:7912337-7912356 MS.gene030539:intron 30.0%
GAAAAACAACACACAAACAA+AGG - chr4.2:7911256-7911275 MS.gene030539:CDS 30.0%
!! AATGAAAGTTCCAAGTTGAT+TGG + chr4.2:7912265-7912284 None:intergenic 30.0%
!! CAAAATGAATAAACGGATTG+TGG + chr4.2:7911427-7911446 None:intergenic 30.0%
!! CAAATATCTTTAGGGTTACA+TGG - chr4.2:7912346-7912365 MS.gene030539:intron 30.0%
!!! TGGTTTTTTCAAATTTTCCG+GGG - chr4.2:7912474-7912493 MS.gene030539:CDS 30.0%
AATAATACCATGCCTATCGT+TGG - chr4.2:7912394-7912413 MS.gene030539:CDS 35.0%
ACTCACTCTTAATCTTGTTG+TGG + chr4.2:7912108-7912127 None:intergenic 35.0%
AGGATAAGCTATATCCTCAA+CGG + chr4.2:7912239-7912258 None:intergenic 35.0%
ATGCATGTTTACTACAACAC+AGG - chr4.2:7911460-7911479 MS.gene030539:CDS 35.0%
ATGGTATTATTGCAGCAACA+AGG + chr4.2:7912385-7912404 None:intergenic 35.0%
GAAAAAGCTGTAGATTGAGA+TGG - chr4.2:7911497-7911516 MS.gene030539:CDS 35.0%
TAATATATACCTGCGGCTTT+AGG + chr4.2:7911358-7911377 None:intergenic 35.0%
TACATCAAACAACAAGGTGA+AGG - chr4.2:7911316-7911335 MS.gene030539:CDS 35.0%
TATTATTGCAGCAACAAGGT+TGG + chr4.2:7912381-7912400 None:intergenic 35.0%
! AAGTTTCCACGTTTAAGATC+AGG + chr4.2:7911538-7911557 None:intergenic 35.0%
ATCTCATTGTCTGTTCTTCC+GGG + chr4.2:7911845-7911864 None:intergenic 40.0%
CAGATTGCTCAAAAATTGCC+CGG - chr4.2:7911824-7911843 MS.gene030539:CDS 40.0%
GATCTCATTGTCTGTTCTTC+CGG + chr4.2:7911846-7911865 None:intergenic 40.0%
GTGTTGTAGGATCAATTCCA+CGG + chr4.2:7911910-7911929 None:intergenic 40.0%
TCAGTAATTTCAGTGGCTCT+CGG - chr4.2:7912137-7912156 MS.gene030539:intron 40.0%
TCAGTTTCAAACAGTAGCAG+TGG - chr4.2:7912208-7912227 MS.gene030539:CDS 40.0%
TGTTTACTACAACACAGGCT+TGG - chr4.2:7911465-7911484 MS.gene030539:CDS 40.0%
TTATCCTCCTCCAATCAACT+TGG - chr4.2:7912252-7912271 MS.gene030539:intron 40.0%
! CACTCTTAATCTTGTTGTGG+TGG + chr4.2:7912105-7912124 None:intergenic 40.0%
! TCTTAATCTTGTTGTGGTGG+TGG + chr4.2:7912102-7912121 None:intergenic 40.0%
!! AACACACAAACAAAGGTGCT+TGG - chr4.2:7911263-7911282 MS.gene030539:CDS 40.0%
!! ATGAATAAACGGATTGTGGG+TGG + chr4.2:7911423-7911442 None:intergenic 40.0%
!! GAAAGTTCCAAGTTGATTGG+AGG + chr4.2:7912262-7912281 None:intergenic 40.0%
!! TGAATAAACGGATTGTGGGT+GGG + chr4.2:7911422-7911441 None:intergenic 40.0%
!! TGAGGGTACTACAGGTAATA+CGG + chr4.2:7912047-7912066 None:intergenic 40.0%
!! TTTTTCAAATTTTCCGGGGC+CGG - chr4.2:7912478-7912497 MS.gene030539:CDS 40.0%
!!! GTGTGTTGTTTTTCACAGCA+AGG + chr4.2:7911250-7911269 None:intergenic 40.0%
AAACGCAAACTCTATAGCCG+TGG - chr4.2:7911890-7911909 MS.gene030539:CDS 45.0%
AACAACAAGGTGAAGGTTGC+TGG - chr4.2:7911323-7911342 MS.gene030539:CDS 45.0%
ACTTGTTTCCAACCATAGCG+TGG + chr4.2:7911594-7911613 None:intergenic 45.0%
AGAAGCTGCTTCTCCTTCAA+TGG - chr4.2:7912003-7912022 MS.gene030539:intron 45.0%
CGACAAAGACACAAAGCTTG+TGG + chr4.2:7912325-7912344 None:intergenic 45.0%
CTCAGACCTGATCTTAAACG+TGG - chr4.2:7911529-7911548 MS.gene030539:CDS 45.0%
CTGATTCTTCAACACCACCA+TGG + chr4.2:7912192-7912211 None:intergenic 45.0%
GAAGTTGGAACACCAACGAT+AGG + chr4.2:7912409-7912428 None:intergenic 45.0%
GCAGTAACAGCAGAAGAAGT+TGG + chr4.2:7912424-7912443 None:intergenic 45.0%
TATTGCAGCAACAAGGTTGG+TGG + chr4.2:7912378-7912397 None:intergenic 45.0%
TTGAGTGGCTGATGTGTTGT+AGG + chr4.2:7911923-7911942 None:intergenic 45.0%
! AAGGCGTTCATCTTCTTCCT+TGG + chr4.2:7911290-7911309 None:intergenic 45.0%
! GTTGCAACTGATTCTGTCCA+TGG - chr4.2:7912172-7912191 MS.gene030539:CDS 45.0%
! TATCATTAGCCTCCACGCTA+TGG - chr4.2:7911579-7911598 MS.gene030539:CDS 45.0%
! TTTTCAAATTTTCCGGGGCC+GGG - chr4.2:7912479-7912498 MS.gene030539:CDS 45.0%
!! AAACAAAGGTGCTTGGTCCA+AGG - chr4.2:7911270-7911289 MS.gene030539:CDS 45.0%
!! AGTTCCAAGTTGATTGGAGG+AGG + chr4.2:7912259-7912278 None:intergenic 45.0%
AACACAGGCTTGGCAAGATG+TGG - chr4.2:7911475-7911494 MS.gene030539:CDS 50.0%
ACGTGGAAACTTCACTCACG+AGG - chr4.2:7911546-7911565 MS.gene030539:CDS 50.0%
AGACACAAAGCTTGTGGCTG+TGG + chr4.2:7912319-7912338 None:intergenic 50.0%
GAAAAAACCATTCCCGACGC+CGG + chr4.2:7912464-7912483 None:intergenic 50.0%
GCTACTAGTACTGCTCTCGT+TGG + chr4.2:7912071-7912090 None:intergenic 50.0%
TGAAGGAGAAGCAGCTTCTG+CGG + chr4.2:7912002-7912021 None:intergenic 50.0%
TGGAACACCAACGATAGGCA+TGG + chr4.2:7912404-7912423 None:intergenic 50.0%
TGTTTCCAACCATAGCGTGG+AGG + chr4.2:7911591-7911610 None:intergenic 50.0%
! AGTACTGCTCTCGTTGGTTG+AGG + chr4.2:7912065-7912084 None:intergenic 50.0%
! ATTAGCCTCCACGCTATGGT+TGG - chr4.2:7911583-7911602 MS.gene030539:CDS 50.0%
! GCAACTGATTCTGTCCATGG+TGG - chr4.2:7912175-7912194 MS.gene030539:CDS 50.0%
! GGTTGTTGCTGAGGAAGTAC+CGG + chr4.2:7911975-7911994 None:intergenic 50.0%
! GTACTGCTCTCGTTGGTTGA+GGG + chr4.2:7912064-7912083 None:intergenic 50.0%
!! TAGCAGTGGTGTTACCGTTG+AGG - chr4.2:7912222-7912241 MS.gene030539:CDS 50.0%
!! TCGTTGGTTGAGGGTACTAC+AGG + chr4.2:7912055-7912074 None:intergenic 50.0%
AAACTTGACAATCCCGGCCC+CGG + chr4.2:7912494-7912513 None:intergenic 55.0%
AAAGCTTGTGGCTGTGGCTG+TGG + chr4.2:7912313-7912332 None:intergenic 55.0%
CAGCCACTCAAAACCCTCTC+CGG - chr4.2:7911932-7911951 MS.gene030539:intron 55.0%
CGTTCTCTTCCTAAAGCCGC+AGG - chr4.2:7911346-7911365 MS.gene030539:CDS 55.0%
TGTGGCTGTGGCTGTTGAGA+GGG + chr4.2:7912301-7912320 None:intergenic 55.0%
!! TGAGGAAGTACCGGCTGAAG+CGG + chr4.2:7911966-7911985 None:intergenic 55.0%
AAAACCATTCCCGACGCCGG+TGG + chr4.2:7912461-7912480 None:intergenic 60.0%
AGAAGCAGCTTCTGCGGAGG+TGG + chr4.2:7911996-7912015 None:intergenic 60.0%
AGGAGAAGCAGCTTCTGCGG+AGG + chr4.2:7911999-7912018 None:intergenic 60.0%
CTGTGGCTGTGGCTGTTGAG+AGG + chr4.2:7912302-7912321 None:intergenic 60.0%
CTGTGGCTGTTGAGAGGGAG+AGG + chr4.2:7912296-7912315 None:intergenic 60.0%
TGCGGAGGTGGTTGTTGCTG+AGG + chr4.2:7911984-7912003 None:intergenic 60.0%
GCTCCACCACCTGCTACCAC+CGG - chr4.2:7912442-7912461 MS.gene030539:CDS 65.0%
!! AGTACCGGCTGAAGCGGCAG+CGG + chr4.2:7911960-7911979 None:intergenic 65.0%
!!! GCGCCGGAGAGGGTTTTGAG+TGG + chr4.2:7911938-7911957 None:intergenic 65.0%
ACGCCGGTGGTAGCAGGTGG+TGG + chr4.2:7912448-7912467 None:intergenic 70.0%
CACCTGCTACCACCGGCGTC+GGG - chr4.2:7912449-7912468 MS.gene030539:CDS 70.0%
CCACCTGCTACCACCGGCGT+CGG - chr4.2:7912448-7912467 MS.gene030539:CDS 70.0%
TTCCCGACGCCGGTGGTAGC+AGG + chr4.2:7912454-7912473 None:intergenic 70.0%
! GCTACCACCGGCGTCGGGAA+TGG - chr4.2:7912454-7912473 MS.gene030539:CDS 70.0%
CCGACGCCGGTGGTAGCAGG+TGG + chr4.2:7912451-7912470 None:intergenic 75.0%
! GGCTGAAGCGGCAGCGGCGC+CGG + chr4.2:7911954-7911973 None:intergenic 80.0%
!! AAGCGGCAGCGGCGCCGGAG+AGG + chr4.2:7911949-7911968 None:intergenic 80.0%
!! AGCGGCAGCGGCGCCGGAGA+GGG + chr4.2:7911948-7911967 None:intergenic 80.0%
!! GGCGCCGCTGCCGCTTCAGC+CGG - chr4.2:7911953-7911972 MS.gene030539:intron 80.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 7911235 7912516 7911235 ID=MS.gene030539
chr4.2 mRNA 7911235 7912516 7911235 ID=MS.gene030539.t1;Parent=MS.gene030539
chr4.2 exon 7912384 7912516 7912384 ID=MS.gene030539.t1.exon1;Parent=MS.gene030539.t1
chr4.2 CDS 7912384 7912516 7912384 ID=cds.MS.gene030539.t1;Parent=MS.gene030539.t1
chr4.2 exon 7912140 7912269 7912140 ID=MS.gene030539.t1.exon2;Parent=MS.gene030539.t1
chr4.2 CDS 7912140 7912269 7912140 ID=cds.MS.gene030539.t1;Parent=MS.gene030539.t1
chr4.2 exon 7911235 7911934 7911235 ID=MS.gene030539.t1.exon3;Parent=MS.gene030539.t1
chr4.2 CDS 7911235 7911934 7911235 ID=cds.MS.gene030539.t1;Parent=MS.gene030539.t1
Gene Sequence

>MS.gene030539

ATGGGTAGATCTCCTTGCTGTGAAAAACAACACACAAACAAAGGTGCTTGGTCCAAGGAAGAAGATGAACGCCTTATTAACTACATCAAACAACAAGGTGAAGGTTGCTGGCGTTCTCTTCCTAAAGCCGCAGGTATATATTAATATTATTACACGTTTGTTTAACTATTTCATTTCATCATTTCCCACCCACAATCCGTTTATTCATTTTGCTTAATTATTTTTATGCATGTTTACTACAACACAGGCTTGGCAAGATGTGGAAAAAGCTGTAGATTGAGATGGATCAATTATCTCAGACCTGATCTTAAACGTGGAAACTTCACTCACGAGGAAGATGAACTTATCATTAGCCTCCACGCTATGGTTGGAAACAAGTATGTATATATATTCTTTCTCAAATTAAATTTATTTTTCTCGTTCATTTTCATCTTTCATATTTTCCCAAAAATCATATTCTATCAAATACTATAATTCATGATTTCTTGTAGTTAAGTTTTTATATATATATATATATATGTACTCCTTCATGTAATTCTGTAATCATTTACTTGTTATTAATTGATTATGTTTTGTTTTCAGATGGTCTCAGATTGCTCAAAAATTGCCCGGAAGAACAGACAATGAGATCAAGAACTATTGGAACACTCACATAAAACGCAAACTCTATAGCCGTGGAATTGATCCTACAACACATCAGCCACTCAAAACCCTCTCCGGCGCCGCTGCCGCTTCAGCCGGTACTTCCTCAGCAACAACCACCTCCGCAGAAGCTGCTTCTCCTTCAATGGTTGTTAATAATAATTCATCCGTATTACCTGTAGTACCCTCAACCAACGAGAGCAGTACTAGTAGCAGCATGAGCCACCACCACAACAAGATTAAGAGTGAGTTTCAGTTATTCAGTAATTTCAGTGGCTCTCGGCTTAAAAAGTTTGTTGCAACTGATTCTGTCCATGGTGGTGTTGAAGAATCAGTTTCAAACAGTAGCAGTGGTGTTACCGTTGAGGATATAGCTTATCCTCCTCCAATCAACTTGGAACTTTCATTGGCTATATCCTCTCCCTCTCAACAGCCACAGCCACAGCCACAAGCTTTGTGTCTTTGTCGTCAAATATCTTTAGGGTTACATGGTAGTAGCCACCAACCTTGTTGCTGCAATAATACCATGCCTATCGTTGGTGTTCCAACTTCTTCTGCTGTTACTGCTCCACCACCTGCTACCACCGGCGTCGGGAATGGTTTTTTCAAATTTTCCGGGGCCGGGATTGTCAAGTTTTGA
Protein sequence

>MS.gene030539.t1

MGRSPCCEKQHTNKGAWSKEEDERLINYIKQQGEGCWRSLPKAAGLARCGKSCRLRWINYLRPDLKRGNFTHEEDELIISLHAMVGNKWSQIAQKLPGRTDNEIKNYWNTHIKRKLYSRGIDPTTHQPLKTLSGAAAASAGTSSATTTSAEAASPSMVVNNNSSVLPVVPSTNESSTSSSMSHHHNKIKSEFQLFSNFSGSRLKKFVATDSVHGGVEESVSNSSSGVTVEDIAYPPPINLELSLAISSPSQQPQPQPQALCLCRQISLGLHGSSHQPCCCNNTMPIVGVPTSSAVTAPPPATTGVGNGFFKFSGAGIVKF