Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030645.t1 | XP_003630218.2 | 94.8 | 305 | 14 | 1 | 1 | 305 | 1 | 303 | 1.90E-115 | 425.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030645.t1 | Q9ASQ2 | 47.7 | 241 | 115 | 3 | 68 | 301 | 70 | 306 | 5.3e-50 | 199.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030645.t1 | A0A0C3Y601 | 94.8 | 305 | 14 | 1 | 1 | 305 | 1 | 303 | 1.4e-115 | 425.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene030645.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030645.t1 | MTR_8g093080 | 95.738 | 305 | 11 | 1 | 1 | 305 | 1 | 303 | 0.0 | 587 |
| MS.gene030645.t1 | MTR_3g114060 | 30.660 | 212 | 93 | 3 | 139 | 302 | 128 | 333 | 9.06e-23 | 96.7 |
| MS.gene030645.t1 | MTR_3g113680 | 30.702 | 228 | 98 | 4 | 132 | 302 | 428 | 652 | 1.24e-22 | 98.6 |
| MS.gene030645.t1 | MTR_7g109430 | 31.140 | 228 | 97 | 4 | 132 | 302 | 428 | 652 | 1.89e-22 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030645.t1 | AT5G45420 | 51.553 | 322 | 119 | 10 | 1 | 301 | 1 | 306 | 1.54e-82 | 251 |
| MS.gene030645.t1 | AT5G45420 | 51.553 | 322 | 119 | 10 | 1 | 301 | 1 | 306 | 1.54e-82 | 251 |
| MS.gene030645.t1 | AT5G45420 | 51.553 | 322 | 119 | 10 | 1 | 301 | 1 | 306 | 1.54e-82 | 251 |
| MS.gene030645.t1 | AT3G11450 | 34.615 | 182 | 80 | 3 | 159 | 302 | 466 | 646 | 6.76e-22 | 96.3 |
| MS.gene030645.t1 | AT5G06110 | 30.732 | 205 | 97 | 4 | 140 | 300 | 457 | 660 | 7.54e-19 | 87.4 |
| MS.gene030645.t1 | AT5G06110 | 30.732 | 205 | 97 | 4 | 140 | 300 | 457 | 660 | 7.54e-19 | 87.4 |
Find 96 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACGATTTCGTTGGTTTC+TGG | 0.174909 | 4.3:-8555294 | None:intergenic |
| AAAGTTGCTGCTGCTGTTCC+TGG | 0.293700 | 4.3:+8556027 | MS.gene030645:CDS |
| TCGGTTGAGGTTTCCTGATC+GGG | 0.354119 | 4.3:-8555496 | None:intergenic |
| GTGAGAAAGTTGAAAGTGTT+TGG | 0.354834 | 4.3:+8555932 | MS.gene030645:CDS |
| CAGAATTGAAGAAAGGGTTT+CGG | 0.376978 | 4.3:+8556082 | MS.gene030645:CDS |
| TGCATTGTCGGCGGCGGTGG+TGG | 0.384974 | 4.3:+8555648 | MS.gene030645:CDS |
| GGGTTTCGGACTGCAAAATC+TGG | 0.390024 | 4.3:+8556096 | MS.gene030645:CDS |
| TTTGCATTCTCTCTCCTCCT+TGG | 0.398248 | 4.3:+8555406 | MS.gene030645:CDS |
| TTCGCTCCAATCTCCATTAC+CGG | 0.403852 | 4.3:+8555433 | MS.gene030645:CDS |
| TTGAAGAATCGAAATGGAAA+TGG | 0.409406 | 4.3:+8555616 | MS.gene030645:CDS |
| ATCGTCCGATCTGCGTTGCT+TGG | 0.410728 | 4.3:-8555557 | None:intergenic |
| CATCTCATAGCAACATCTTT+CGG | 0.412166 | 4.3:-8556000 | None:intergenic |
| AAAGGAGTTGGGAGAGAAGA+AGG | 0.421544 | 4.3:+8555819 | MS.gene030645:CDS |
| AGAGAAGAAGGTTGATGATT+CGG | 0.423910 | 4.3:+8555831 | MS.gene030645:CDS |
| GATAAGAGACTTGTTGAAGA+AGG | 0.424391 | 4.3:+8555892 | MS.gene030645:CDS |
| GTCGGCGGCGGTGGTGGAGG+AGG | 0.424999 | 4.3:+8555654 | MS.gene030645:CDS |
| TGTTGCATTGTCGGCGGCGG+TGG | 0.428265 | 4.3:+8555645 | MS.gene030645:CDS |
| CGGGTGCACCGGACTGATAC+AGG | 0.433545 | 4.3:-8555249 | None:intergenic |
| ATTGTCGGCGGCGGTGGTGG+AGG | 0.433697 | 4.3:+8555651 | MS.gene030645:CDS |
| TGGAAACGGTGTTGCATTGT+CGG | 0.435353 | 4.3:+8555636 | MS.gene030645:CDS |
| ACGGGAATCGCCGCCGGTAA+TGG | 0.437783 | 4.3:-8555446 | None:intergenic |
| TGCCGTCAATTTCCCCGATC+AGG | 0.438106 | 4.3:+8555483 | MS.gene030645:CDS |
| GGCGGCGGTGGTGGAGGAGG+AGG | 0.446195 | 4.3:+8555657 | MS.gene030645:CDS |
| TCGCCGCCGGTAATGGAGAT+TGG | 0.447359 | 4.3:-8555439 | None:intergenic |
| AGAATTGCAGAATTGAAGAA+AGG | 0.450045 | 4.3:+8556075 | MS.gene030645:CDS |
| ATCGGTTGAGGTTTCCTGAT+CGG | 0.454293 | 4.3:-8555497 | None:intergenic |
| GAGGCGATAGCGGAGGCATT+CGG | 0.458797 | 4.3:+8555760 | MS.gene030645:CDS |
| GATTTCGTTGGTTTCTGGTA+AGG | 0.461575 | 4.3:-8555289 | None:intergenic |
| TTCAGTGGCCGCGGGTGCAC+CGG | 0.461986 | 4.3:-8555260 | None:intergenic |
| CGAAAGATGTTGCTATGAGA+TGG | 0.463082 | 4.3:+8556001 | MS.gene030645:CDS |
| TGGAGGAGGAGGAGAAGGAA+TGG | 0.463216 | 4.3:+8555668 | MS.gene030645:CDS |
| GTTTCGTTGAAGAATCGAAA+TGG | 0.464225 | 4.3:+8555610 | MS.gene030645:CDS |
| CAACCGATGAGGATGATTCC+AGG | 0.465520 | 4.3:+8555512 | MS.gene030645:CDS |
| GGCGATTCCCGTGTCGGCCG+TGG | 0.468929 | 4.3:+8555457 | MS.gene030645:CDS |
| GGAATCATCCTCATCGGTTG+AGG | 0.470477 | 4.3:-8555509 | None:intergenic |
| TCGATTTGAGCGGTTCAGAT+TGG | 0.470526 | 4.3:-8555372 | None:intergenic |
| AGGCTGTGATTCAGTGGCCG+CGG | 0.476901 | 4.3:-8555269 | None:intergenic |
| CGGCATGACCACGGCCGACA+CGG | 0.478990 | 4.3:-8555465 | None:intergenic |
| TTCAACGAAACCACCGGCGC+TGG | 0.480043 | 4.3:-8555598 | None:intergenic |
| GGCATGACCACGGCCGACAC+GGG | 0.485981 | 4.3:-8555464 | None:intergenic |
| GGTGGTGGAGGAGGAGGAGA+AGG | 0.492408 | 4.3:+8555663 | MS.gene030645:CDS |
| AAGAGACTTGTTGAAGAAGG+AGG | 0.496476 | 4.3:+8555895 | MS.gene030645:CDS |
| TCCCACCGTCCTGGTTTCCC+CGG | 0.499822 | 4.3:-8555739 | None:intergenic |
| GAAGATTGAAGAGATTGAAA+CGG | 0.500067 | 4.3:-8555326 | None:intergenic |
| GGCTGTGATTCAGTGGCCGC+GGG | 0.502205 | 4.3:-8555268 | None:intergenic |
| GAATTGCAGAATTGAAGAAA+GGG | 0.503367 | 4.3:+8556076 | MS.gene030645:CDS |
| CAAGCTGCTTTCGATTTCCC+AGG | 0.506123 | 4.3:-8556045 | None:intergenic |
| CACCGTCCTGGTTTCCCCGG+TGG | 0.513685 | 4.3:-8555736 | None:intergenic |
| GCCGACACGGGAATCGCCGC+CGG | 0.516860 | 4.3:-8555452 | None:intergenic |
| GGTGAAGAAATCAAAGGAGT+TGG | 0.518193 | 4.3:+8555807 | MS.gene030645:CDS |
| CGGTGTTGCATTGTCGGCGG+CGG | 0.518420 | 4.3:+8555642 | MS.gene030645:CDS |
| GTGAAGAAATCAAAGGAGTT+GGG | 0.518866 | 4.3:+8555808 | MS.gene030645:CDS |
| CGATTCTTCAACGAAACCAC+CGG | 0.522401 | 4.3:-8555604 | None:intergenic |
| GAAGGAGGAGATTTAGCGAC+GGG | 0.533839 | 4.3:+8555910 | MS.gene030645:CDS |
| TCTGAAGAAGAGAAAAGCGT+TGG | 0.535242 | 4.3:+8555870 | MS.gene030645:CDS |
| GCTATCGCCTCCCACCGTCC+TGG | 0.536007 | 4.3:-8555748 | None:intergenic |
| CTCTGTAGTAGCTCCAGCGC+CGG | 0.539400 | 4.3:+8555585 | MS.gene030645:CDS |
| AATCGAAATGGAAATGGAAA+CGG | 0.539438 | 4.3:+8555622 | MS.gene030645:CDS |
| ACCGGCGGCGATTCCCGTGT+CGG | 0.539977 | 4.3:+8555451 | MS.gene030645:CDS |
| TTTCCTGGAATCATCCTCAT+CGG | 0.539989 | 4.3:-8555515 | None:intergenic |
| AGGACGGTGGGAGGCGATAG+CGG | 0.545275 | 4.3:+8555750 | MS.gene030645:CDS |
| GGGGAAACCAGGACGGTGGG+AGG | 0.546154 | 4.3:+8555741 | MS.gene030645:CDS |
| CAGATCCAAGCAACGCAGAT+CGG | 0.552256 | 4.3:+8555552 | MS.gene030645:CDS |
| AAGTTGCTGCTGCTGTTCCT+GGG | 0.554829 | 4.3:+8556028 | MS.gene030645:CDS |
| ACCGGGGAAACCAGGACGGT+GGG | 0.559178 | 4.3:+8555738 | MS.gene030645:CDS |
| CCGAAGTTCCTGTATCAGTC+CGG | 0.563162 | 4.3:+8555241 | MS.gene030645:CDS |
| GGCATTCGGAGGGCGTCACA+AGG | 0.566101 | 4.3:+8555774 | MS.gene030645:CDS |
| GAAAGATGTTGCTATGAGAT+GGG | 0.567305 | 4.3:+8556002 | MS.gene030645:CDS |
| CTGGTAAGGCTGTGATTCAG+TGG | 0.573589 | 4.3:-8555275 | None:intergenic |
| CCGGACTGATACAGGAACTT+CGG | 0.574834 | 4.3:-8555241 | None:intergenic |
| TGTAGTAGCTCCAGCGCCGG+TGG | 0.575392 | 4.3:+8555588 | MS.gene030645:CDS |
| CACCGGGGAAACCAGGACGG+TGG | 0.578167 | 4.3:+8555737 | MS.gene030645:CDS |
| TTCCTGATCGGGGAAATTGA+CGG | 0.583685 | 4.3:-8555485 | None:intergenic |
| GCGATAGCGGAGGCATTCGG+AGG | 0.585439 | 4.3:+8555763 | MS.gene030645:CDS |
| GGAAATTGACGGCATGACCA+CGG | 0.588936 | 4.3:-8555474 | None:intergenic |
| GTATCAGTCCGGTGCACCCG+CGG | 0.599158 | 4.3:+8555252 | MS.gene030645:CDS |
| GCGTCACAAGGTGGAAAGCG+TGG | 0.605173 | 4.3:+8555786 | MS.gene030645:CDS |
| GTAATGGAGATTGGAGCGAA+AGG | 0.608208 | 4.3:-8555430 | None:intergenic |
| ACAGCGATGAACGATTTCGT+TGG | 0.617295 | 4.3:-8555301 | None:intergenic |
| TGAGATTCTGAAGAAACAGA+TGG | 0.629866 | 4.3:+8555705 | MS.gene030645:CDS |
| CGGTTGAGGTTTCCTGATCG+GGG | 0.631525 | 4.3:-8555495 | None:intergenic |
| ATCCACCGGGGAAACCAGGA+CGG | 0.634948 | 4.3:+8555734 | MS.gene030645:CDS |
| AAGTGTTTGGAGTTCAAACG+AGG | 0.645478 | 4.3:+8555945 | MS.gene030645:CDS |
| AGAAGGAGGAGATTTAGCGA+CGG | 0.648578 | 4.3:+8555909 | MS.gene030645:CDS |
| CGGCGCTGGAGCTACTACAG+AGG | 0.650195 | 4.3:-8555584 | None:intergenic |
| CGATAGCGGAGGCATTCGGA+GGG | 0.653736 | 4.3:+8555764 | MS.gene030645:CDS |
| GCTCCAATCTCCATTACCGG+CGG | 0.663325 | 4.3:+8555436 | MS.gene030645:CDS |
| ACGGTGGGAGGCGATAGCGG+AGG | 0.665574 | 4.3:+8555753 | MS.gene030645:CDS |
| AAGCGTGGTGAAGAAATCAA+AGG | 0.666488 | 4.3:+8555801 | MS.gene030645:CDS |
| AAACGGTGTTGCATTGTCGG+CGG | 0.669146 | 4.3:+8555639 | MS.gene030645:CDS |
| TCAGGAAACCTCAACCGATG+AGG | 0.671357 | 4.3:+8555501 | MS.gene030645:CDS |
| AGATTGGAGCGAAAGGACCA+AGG | 0.675323 | 4.3:-8555423 | None:intergenic |
| ATTCGGAGGGCGTCACAAGG+TGG | 0.679939 | 4.3:+8555777 | MS.gene030645:CDS |
| CAGATGAAAATCGATTTGAG+CGG | 0.706129 | 4.3:-8555382 | None:intergenic |
| TTGGAGCGAAAGGACCAAGG+AGG | 0.738797 | 4.3:-8555420 | None:intergenic |
| GGAGAAGGAATGGAACGACG+AGG | 0.745135 | 4.3:+8555678 | MS.gene030645:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AATCGAAATGGAAATGGAAA+CGG | + | chr4.3:8555622-8555641 | MS.gene030645:CDS | 30.0% | |
| AGAATTGCAGAATTGAAGAA+AGG | + | chr4.3:8556075-8556094 | MS.gene030645:CDS | 30.0% | |
| GAAGATTGAAGAGATTGAAA+CGG | - | chr4.3:8555329-8555348 | None:intergenic | 30.0% | |
| GAATTGCAGAATTGAAGAAA+GGG | + | chr4.3:8556076-8556095 | MS.gene030645:CDS | 30.0% | |
| TTGAAGAATCGAAATGGAAA+TGG | + | chr4.3:8555616-8555635 | MS.gene030645:CDS | 30.0% | |
| CAGAATTGAAGAAAGGGTTT+CGG | + | chr4.3:8556082-8556101 | MS.gene030645:CDS | 35.0% | |
| CATCTCATAGCAACATCTTT+CGG | - | chr4.3:8556003-8556022 | None:intergenic | 35.0% | |
| GAAAGATGTTGCTATGAGAT+GGG | + | chr4.3:8556002-8556021 | MS.gene030645:CDS | 35.0% | |
| GTGAAGAAATCAAAGGAGTT+GGG | + | chr4.3:8555808-8555827 | MS.gene030645:CDS | 35.0% | |
| GTTTCGTTGAAGAATCGAAA+TGG | + | chr4.3:8555610-8555629 | MS.gene030645:CDS | 35.0% | |
| ! | TGAGATTCTGAAGAAACAGA+TGG | + | chr4.3:8555705-8555724 | MS.gene030645:CDS | 35.0% |
| !! | AGAGAAGAAGGTTGATGATT+CGG | + | chr4.3:8555831-8555850 | MS.gene030645:CDS | 35.0% |
| !! | CAGATGAAAATCGATTTGAG+CGG | - | chr4.3:8555385-8555404 | None:intergenic | 35.0% |
| !! | GATAAGAGACTTGTTGAAGA+AGG | + | chr4.3:8555892-8555911 | MS.gene030645:CDS | 35.0% |
| !! | GTGAGAAAGTTGAAAGTGTT+TGG | + | chr4.3:8555932-8555951 | MS.gene030645:CDS | 35.0% |
| AAGCGTGGTGAAGAAATCAA+AGG | + | chr4.3:8555801-8555820 | MS.gene030645:CDS | 40.0% | |
| ACAGATGGTGAAAAATCCAC+CGG | + | chr4.3:8555720-8555739 | MS.gene030645:CDS | 40.0% | |
| CGAAAGATGTTGCTATGAGA+TGG | + | chr4.3:8556001-8556020 | MS.gene030645:CDS | 40.0% | |
| GGTGAAGAAATCAAAGGAGT+TGG | + | chr4.3:8555807-8555826 | MS.gene030645:CDS | 40.0% | |
| TTTCCTGGAATCATCCTCAT+CGG | - | chr4.3:8555518-8555537 | None:intergenic | 40.0% | |
| ! | AAGTGTTTGGAGTTCAAACG+AGG | + | chr4.3:8555945-8555964 | MS.gene030645:CDS | 40.0% |
| ! | TCTGAAGAAGAGAAAAGCGT+TGG | + | chr4.3:8555870-8555889 | MS.gene030645:CDS | 40.0% |
| !! | AAGAGACTTGTTGAAGAAGG+AGG | + | chr4.3:8555895-8555914 | MS.gene030645:CDS | 40.0% |
| !! | CGCTCAAATCGATTTTCATC+TGG | + | chr4.3:8555383-8555402 | MS.gene030645:CDS | 40.0% |
| !! | GATTTCGTTGGTTTCTGGTA+AGG | - | chr4.3:8555292-8555311 | None:intergenic | 40.0% |
| !! | TGAACGATTTCGTTGGTTTC+TGG | - | chr4.3:8555297-8555316 | None:intergenic | 40.0% |
| AAAGGAGTTGGGAGAGAAGA+AGG | + | chr4.3:8555819-8555838 | MS.gene030645:CDS | 45.0% | |
| ACAGCGATGAACGATTTCGT+TGG | - | chr4.3:8555304-8555323 | None:intergenic | 45.0% | |
| AGAAGGAGGAGATTTAGCGA+CGG | + | chr4.3:8555909-8555928 | MS.gene030645:CDS | 45.0% | |
| AGATGGTGAAAAATCCACCG+GGG | + | chr4.3:8555722-8555741 | MS.gene030645:CDS | 45.0% | |
| ATCGGTTGAGGTTTCCTGAT+CGG | - | chr4.3:8555500-8555519 | None:intergenic | 45.0% | |
| CAGATGGTGAAAAATCCACC+GGG | + | chr4.3:8555721-8555740 | MS.gene030645:CDS | 45.0% | |
| CGATTCTTCAACGAAACCAC+CGG | - | chr4.3:8555607-8555626 | None:intergenic | 45.0% | |
| TTCCTGATCGGGGAAATTGA+CGG | - | chr4.3:8555488-8555507 | None:intergenic | 45.0% | |
| TTCGCTCCAATCTCCATTAC+CGG | + | chr4.3:8555433-8555452 | MS.gene030645:CDS | 45.0% | |
| TTTGCATTCTCTCTCCTCCT+TGG | + | chr4.3:8555406-8555425 | MS.gene030645:CDS | 45.0% | |
| ! | GTAATGGAGATTGGAGCGAA+AGG | - | chr4.3:8555433-8555452 | None:intergenic | 45.0% |
| ! | TCGATTTGAGCGGTTCAGAT+TGG | - | chr4.3:8555375-8555394 | None:intergenic | 45.0% |
| !! | TGGAAACGGTGTTGCATTGT+CGG | + | chr4.3:8555636-8555655 | MS.gene030645:CDS | 45.0% |
| AAAAATCCACCGGGGAAACC+AGG | + | chr4.3:8555730-8555749 | MS.gene030645:CDS | 50.0% | |
| AAAGTTGCTGCTGCTGTTCC+TGG | + | chr4.3:8556027-8556046 | MS.gene030645:CDS | 50.0% | |
| AAGTTGCTGCTGCTGTTCCT+GGG | + | chr4.3:8556028-8556047 | MS.gene030645:CDS | 50.0% | |
| AGATTGGAGCGAAAGGACCA+AGG | - | chr4.3:8555426-8555445 | None:intergenic | 50.0% | |
| CAACCGATGAGGATGATTCC+AGG | + | chr4.3:8555512-8555531 | MS.gene030645:CDS | 50.0% | |
| CAGATCCAAGCAACGCAGAT+CGG | + | chr4.3:8555552-8555571 | MS.gene030645:CDS | 50.0% | |
| CCGAAGTTCCTGTATCAGTC+CGG | + | chr4.3:8555241-8555260 | MS.gene030645:CDS | 50.0% | |
| CCGGACTGATACAGGAACTT+CGG | - | chr4.3:8555244-8555263 | None:intergenic | 50.0% | |
| CTGGTAAGGCTGTGATTCAG+TGG | - | chr4.3:8555278-8555297 | None:intergenic | 50.0% | |
| GAAGGAGGAGATTTAGCGAC+GGG | + | chr4.3:8555910-8555929 | MS.gene030645:CDS | 50.0% | |
| GGAAATTGACGGCATGACCA+CGG | - | chr4.3:8555477-8555496 | None:intergenic | 50.0% | |
| GGGTTTCGGACTGCAAAATC+TGG | + | chr4.3:8556096-8556115 | MS.gene030645:CDS | 50.0% | |
| TCAGGAAACCTCAACCGATG+AGG | + | chr4.3:8555501-8555520 | MS.gene030645:CDS | 50.0% | |
| TCGGTTGAGGTTTCCTGATC+GGG | - | chr4.3:8555499-8555518 | None:intergenic | 50.0% | |
| ! | CAAGCTGCTTTCGATTTCCC+AGG | - | chr4.3:8556048-8556067 | None:intergenic | 50.0% |
| ! | GGAATCATCCTCATCGGTTG+AGG | - | chr4.3:8555512-8555531 | None:intergenic | 50.0% |
| !! | AAACGGTGTTGCATTGTCGG+CGG | + | chr4.3:8555639-8555658 | MS.gene030645:CDS | 50.0% |
| !!! | GCGCTGCTGAGATTTTTTCC+TGG | - | chr4.3:8555533-8555552 | None:intergenic | 50.0% |
| ATCGTCCGATCTGCGTTGCT+TGG | - | chr4.3:8555560-8555579 | None:intergenic | 55.0% | |
| CGGTTGAGGTTTCCTGATCG+GGG | - | chr4.3:8555498-8555517 | None:intergenic | 55.0% | |
| GCTCCAATCTCCATTACCGG+CGG | + | chr4.3:8555436-8555455 | MS.gene030645:CDS | 55.0% | |
| GGAGAAGGAATGGAACGACG+AGG | + | chr4.3:8555678-8555697 | MS.gene030645:CDS | 55.0% | |
| TGCCGTCAATTTCCCCGATC+AGG | + | chr4.3:8555483-8555502 | MS.gene030645:CDS | 55.0% | |
| TGGAGGAGGAGGAGAAGGAA+TGG | + | chr4.3:8555668-8555687 | MS.gene030645:CDS | 55.0% | |
| TTGGAGCGAAAGGACCAAGG+AGG | - | chr4.3:8555423-8555442 | None:intergenic | 55.0% | |
| AGGCTGTGATTCAGTGGCCG+CGG | - | chr4.3:8555272-8555291 | None:intergenic | 60.0% | |
| ATCCACCGGGGAAACCAGGA+CGG | + | chr4.3:8555734-8555753 | MS.gene030645:CDS | 60.0% | |
| CTCTGTAGTAGCTCCAGCGC+CGG | + | chr4.3:8555585-8555604 | MS.gene030645:CDS | 60.0% | |
| GCGTCACAAGGTGGAAAGCG+TGG | + | chr4.3:8555786-8555805 | MS.gene030645:CDS | 60.0% | |
| TTCAACGAAACCACCGGCGC+TGG | - | chr4.3:8555601-8555620 | None:intergenic | 60.0% | |
| !! | ATTCGGAGGGCGTCACAAGG+TGG | + | chr4.3:8555777-8555796 | MS.gene030645:CDS | 60.0% |
| !! | CGATAGCGGAGGCATTCGGA+GGG | + | chr4.3:8555764-8555783 | MS.gene030645:CDS | 60.0% |
| !! | GAGGCGATAGCGGAGGCATT+CGG | + | chr4.3:8555760-8555779 | MS.gene030645:CDS | 60.0% |
| !! | TCGCCGCCGGTAATGGAGAT+TGG | - | chr4.3:8555442-8555461 | None:intergenic | 60.0% |
| ACCGGGGAAACCAGGACGGT+GGG | + | chr4.3:8555738-8555757 | MS.gene030645:CDS | 65.0% | |
| ACGGGAATCGCCGCCGGTAA+TGG | - | chr4.3:8555449-8555468 | None:intergenic | 65.0% | |
| AGGACGGTGGGAGGCGATAG+CGG | + | chr4.3:8555750-8555769 | MS.gene030645:CDS | 65.0% | |
| CGGGTGCACCGGACTGATAC+AGG | - | chr4.3:8555252-8555271 | None:intergenic | 65.0% | |
| GGCTGTGATTCAGTGGCCGC+GGG | - | chr4.3:8555271-8555290 | None:intergenic | 65.0% | |
| GTATCAGTCCGGTGCACCCG+CGG | + | chr4.3:8555252-8555271 | MS.gene030645:CDS | 65.0% | |
| TCCCACCGTCCTGGTTTCCC+CGG | - | chr4.3:8555742-8555761 | None:intergenic | 65.0% | |
| TGTTGCATTGTCGGCGGCGG+TGG | + | chr4.3:8555645-8555664 | MS.gene030645:CDS | 65.0% | |
| ! | CGGCGCTGGAGCTACTACAG+AGG | - | chr4.3:8555587-8555606 | None:intergenic | 65.0% |
| ! | TGTAGTAGCTCCAGCGCCGG+TGG | + | chr4.3:8555588-8555607 | MS.gene030645:CDS | 65.0% |
| !! | CGGTGTTGCATTGTCGGCGG+CGG | + | chr4.3:8555642-8555661 | MS.gene030645:CDS | 65.0% |
| !! | GCGATAGCGGAGGCATTCGG+AGG | + | chr4.3:8555763-8555782 | MS.gene030645:CDS | 65.0% |
| !! | GGCATTCGGAGGGCGTCACA+AGG | + | chr4.3:8555774-8555793 | MS.gene030645:CDS | 65.0% |
| !! | GGTGGTGGAGGAGGAGGAGA+AGG | + | chr4.3:8555663-8555682 | MS.gene030645:CDS | 65.0% |
| ACCGGCGGCGATTCCCGTGT+CGG | + | chr4.3:8555451-8555470 | MS.gene030645:CDS | 70.0% | |
| CACCGGGGAAACCAGGACGG+TGG | + | chr4.3:8555737-8555756 | MS.gene030645:CDS | 70.0% | |
| CACCGTCCTGGTTTCCCCGG+TGG | - | chr4.3:8555739-8555758 | None:intergenic | 70.0% | |
| CGGCATGACCACGGCCGACA+CGG | - | chr4.3:8555468-8555487 | None:intergenic | 70.0% | |
| GCTATCGCCTCCCACCGTCC+TGG | - | chr4.3:8555751-8555770 | None:intergenic | 70.0% | |
| GGCATGACCACGGCCGACAC+GGG | - | chr4.3:8555467-8555486 | None:intergenic | 70.0% | |
| GGGGAAACCAGGACGGTGGG+AGG | + | chr4.3:8555741-8555760 | MS.gene030645:CDS | 70.0% | |
| TGCATTGTCGGCGGCGGTGG+TGG | + | chr4.3:8555648-8555667 | MS.gene030645:CDS | 70.0% | |
| TTCAGTGGCCGCGGGTGCAC+CGG | - | chr4.3:8555263-8555282 | None:intergenic | 70.0% | |
| ! | ACGGTGGGAGGCGATAGCGG+AGG | + | chr4.3:8555753-8555772 | MS.gene030645:CDS | 70.0% |
| ! | ATTGTCGGCGGCGGTGGTGG+AGG | + | chr4.3:8555651-8555670 | MS.gene030645:CDS | 70.0% |
| GCCGACACGGGAATCGCCGC+CGG | - | chr4.3:8555455-8555474 | None:intergenic | 75.0% | |
| ! | GGCGATTCCCGTGTCGGCCG+TGG | + | chr4.3:8555457-8555476 | MS.gene030645:CDS | 75.0% |
| !!! | GGCGGCGGTGGTGGAGGAGG+AGG | + | chr4.3:8555657-8555676 | MS.gene030645:CDS | 80.0% |
| !!! | GTCGGCGGCGGTGGTGGAGG+AGG | + | chr4.3:8555654-8555673 | MS.gene030645:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 8555214 | 8556131 | 8555214 | ID=MS.gene030645 |
| chr4.3 | mRNA | 8555214 | 8556131 | 8555214 | ID=MS.gene030645.t1;Parent=MS.gene030645 |
| chr4.3 | exon | 8555214 | 8556131 | 8555214 | ID=MS.gene030645.t1.exon1;Parent=MS.gene030645.t1 |
| chr4.3 | CDS | 8555214 | 8556131 | 8555214 | ID=cds.MS.gene030645.t1;Parent=MS.gene030645.t1 |
| Gene Sequence |
| Protein sequence |
