AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030649

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030649.t1 MTR_8g093040 71.429 308 46 6 1 300 1 274 2.70e-135 385
MS.gene030649.t1 MTR_6g045327 53.355 313 118 5 1 303 1 295 2.67e-101 303
MS.gene030649.t1 MTR_4g021760 48.476 328 136 8 1 313 1 310 2.00e-91 275
MS.gene030649.t1 MTR_4g021855 50.598 251 101 5 1 240 1 239 1.07e-73 229
MS.gene030649.t1 MTR_4g021790 44.637 289 128 6 1 278 1 268 5.06e-70 219
MS.gene030649.t1 MTR_4g021845 50.901 222 93 4 1 211 1 217 4.77e-69 215
MS.gene030649.t1 MTR_1g032570 37.203 379 162 9 12 320 9 381 1.30e-67 223
MS.gene030649.t1 MTR_8g105600 36.932 352 164 10 14 324 9 343 1.49e-53 184
MS.gene030649.t1 MTR_2g034960 41.667 240 106 2 13 218 28 267 1.27e-50 177
MS.gene030649.t1 MTR_5g055260 45.064 233 87 7 1 223 1 202 5.53e-49 164
MS.gene030649.t1 MTR_8g079940 38.077 260 122 3 14 237 25 281 1.51e-48 170
MS.gene030649.t1 MTR_4g121020 39.669 242 110 2 13 218 30 271 5.43e-48 171
MS.gene030649.t1 MTR_4g121020 39.669 242 110 2 13 218 30 271 5.60e-48 171
MS.gene030649.t1 MTR_3g086100 37.132 272 131 4 14 247 13 282 1.84e-47 168
MS.gene030649.t1 MTR_1g032570 34.277 318 133 9 73 320 1 312 9.82e-44 158
MS.gene030649.t1 MTR_4g131600 35.573 253 130 2 4 223 10 262 6.24e-42 153
MS.gene030649.t1 MTR_6g016850 47.134 157 70 4 9 153 4 159 1.25e-41 142
MS.gene030649.t1 MTR_4g023980 50.735 136 56 2 61 185 36 171 9.90e-41 140
MS.gene030649.t1 MTR_4g131580 33.460 263 133 3 14 234 17 279 5.01e-40 148
MS.gene030649.t1 MTR_3g102600 36.574 216 113 1 13 228 7 198 8.54e-40 140
MS.gene030649.t1 MTR_4g131570 35.060 251 125 3 14 226 17 267 5.31e-39 145
MS.gene030649.t1 MTR_3g106220 35.081 248 119 3 13 218 7 254 4.08e-38 143
MS.gene030649.t1 MTR_3g102600 37.186 199 101 1 13 211 7 181 6.19e-38 134
MS.gene030649.t1 MTR_1g013170 34.426 244 122 2 13 218 4 247 9.14e-37 138
MS.gene030649.t1 MTR_2g450070 31.559 263 133 3 6 221 10 272 3.24e-36 138
MS.gene030649.t1 MTR_2g450070 31.559 263 133 3 6 221 10 272 3.85e-36 138
MS.gene030649.t1 MTR_7g117705 33.061 245 126 3 13 219 4 248 3.64e-34 130
MS.gene030649.t1 MTR_3g102590 36.139 202 114 3 13 213 7 194 9.17e-33 120
MS.gene030649.t1 MTR_3g102590 36.318 201 113 3 13 212 7 193 1.05e-32 121
MS.gene030649.t1 MTR_1g013180 32.031 256 136 2 1 218 143 398 1.56e-32 127
MS.gene030649.t1 MTR_3g102600 36.416 173 86 1 56 228 1 149 2.52e-32 119
MS.gene030649.t1 MTR_3g086100 35.211 213 98 4 73 247 1 211 5.82e-32 125
MS.gene030649.t1 MTR_3g102600 37.179 156 74 1 56 211 1 132 1.07e-30 113
MS.gene030649.t1 MTR_7g026400 33.000 200 106 3 44 218 17 213 3.08e-30 120
MS.gene030649.t1 MTR_0450s0040 29.960 247 153 6 17 246 7 250 7.94e-29 114
MS.gene030649.t1 MTR_4g121020 38.889 162 62 3 93 218 7 167 1.70e-24 104
MS.gene030649.t1 MTR_8g032710 26.623 308 156 8 18 268 21 315 6.64e-22 96.3
MS.gene030649.t1 MTR_1g067110 31.707 123 79 2 18 136 85 206 3.10e-14 73.9
MS.gene030649.t1 MTR_1g067110 31.707 123 79 2 18 136 85 206 3.24e-14 73.9
MS.gene030649.t1 MTR_8g024260 31.452 124 82 1 16 136 34 157 1.39e-13 72.0
MS.gene030649.t1 MTR_4g061360 34.146 123 76 2 18 136 89 210 1.39e-13 72.0
MS.gene030649.t1 MTR_7g118260 30.000 130 88 1 15 141 11 140 2.21e-13 71.2
MS.gene030649.t1 MTR_3g092780 30.328 122 82 1 18 136 56 177 2.71e-13 70.9
MS.gene030649.t1 MTR_3g092780 30.328 122 82 1 18 136 56 177 2.84e-13 70.9
MS.gene030649.t1 MTR_3g092780 30.328 122 82 1 18 136 56 177 3.20e-13 70.9
MS.gene030649.t1 MTR_3g092780 30.328 122 82 1 18 136 56 177 3.23e-13 70.9
MS.gene030649.t1 MTR_7g118260 30.400 125 84 1 15 136 11 135 3.55e-13 70.5
MS.gene030649.t1 MTR_4g064730 53.448 58 27 0 161 218 130 187 2.52e-12 67.0
MS.gene030649.t1 MTR_5g014040 29.197 137 90 4 5 139 6 137 1.39e-11 65.5
MS.gene030649.t1 MTR_5g014040 29.197 137 90 4 5 139 6 137 1.41e-11 65.5
MS.gene030649.t1 MTR_5g041350 47.143 70 35 2 162 230 15 83 3.10e-11 63.9
MS.gene030649.t1 MTR_7g089010 50.000 58 29 0 161 218 90 147 5.71e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030649.t1 AT2G01760 37.165 261 119 2 13 228 6 266 1.25e-49 170
MS.gene030649.t1 AT2G01760 33.564 289 119 3 13 228 6 294 7.90e-44 155
MS.gene030649.t1 AT3G16857 34.457 267 119 2 8 218 27 293 7.81e-42 154
MS.gene030649.t1 AT3G16857 34.457 267 119 2 8 218 27 293 8.24e-42 154
MS.gene030649.t1 AT1G67710 37.698 252 118 5 15 227 8 259 7.24e-41 149
MS.gene030649.t1 AT2G25180 36.111 252 126 4 1 218 1 251 1.20e-39 147
MS.gene030649.t1 AT4G31920 37.449 243 123 5 1 218 1 239 9.47e-38 141
MS.gene030649.t1 AT2G01760 34.826 201 86 2 73 228 1 201 5.36e-32 122
MS.gene030649.t1 AT3G16857 33.184 223 93 2 52 218 1 223 7.55e-32 125
MS.gene030649.t1 AT5G58080 30.544 239 132 3 13 218 13 250 5.82e-30 120
MS.gene030649.t1 AT1G49190 29.688 256 137 5 5 218 21 275 1.31e-28 114
MS.gene030649.t1 AT1G67710 36.598 194 84 5 73 227 1 194 4.34e-27 110
MS.gene030649.t1 AT3G62670 30.962 239 126 6 19 224 42 274 3.04e-26 108
MS.gene030649.t1 AT5G49240 28.125 256 135 3 3 215 27 276 1.22e-25 104
MS.gene030649.t1 AT1G49190 35.878 131 84 0 6 136 22 152 9.69e-21 93.2
MS.gene030649.t1 AT1G67710 35.057 174 74 5 93 227 12 185 2.57e-18 85.5
MS.gene030649.t1 AT5G60100 33.607 122 78 1 18 136 64 185 2.25e-16 80.1
MS.gene030649.t1 AT5G60100 33.607 122 78 1 18 136 64 185 2.31e-16 80.1
MS.gene030649.t1 AT5G60100 33.607 122 78 1 18 136 64 185 2.31e-16 80.1
MS.gene030649.t1 AT5G60100 33.607 122 78 1 18 136 64 185 2.31e-16 80.1
MS.gene030649.t1 AT5G60100 33.607 122 78 1 18 136 64 185 2.92e-16 79.3
MS.gene030649.t1 AT5G60100 33.607 122 78 1 18 136 64 185 2.92e-16 79.3
MS.gene030649.t1 AT5G60100 33.607 122 78 1 18 136 64 185 2.92e-16 79.3
MS.gene030649.t1 AT2G46790 32.520 123 80 1 18 137 37 159 3.69e-15 76.3
MS.gene030649.t1 AT2G46790 32.520 123 80 1 18 137 37 159 4.58e-15 75.9
MS.gene030649.t1 AT5G24470 31.148 122 81 1 18 136 50 171 2.44e-14 73.9
MS.gene030649.t1 AT5G59570 52.542 59 28 0 160 218 139 197 4.83e-13 68.9
MS.gene030649.t1 AT5G59570 52.542 59 28 0 160 218 139 197 4.83e-13 68.9
MS.gene030649.t1 AT3G46640 53.448 58 27 0 161 218 143 200 1.14e-12 68.2
MS.gene030649.t1 AT3G46640 53.448 58 27 0 161 218 143 200 1.14e-12 68.2
MS.gene030649.t1 AT3G46640 53.448 58 27 0 161 218 143 200 1.27e-12 68.2
MS.gene030649.t1 AT5G02810 31.148 122 81 1 18 136 78 199 4.80e-12 67.4
MS.gene030649.t1 AT5G61380 29.508 122 83 1 18 136 19 140 1.10e-11 66.2
MS.gene030649.t1 AT5G07210 38.462 104 62 2 132 234 199 301 1.61e-11 65.5
MS.gene030649.t1 AT5G07210 38.462 104 62 2 132 234 191 293 1.81e-11 65.5
MS.gene030649.t1 AT5G44190 51.852 54 26 0 159 212 144 197 2.08e-11 64.7
MS.gene030649.t1 AT2G40970 48.276 58 30 0 161 218 104 161 2.35e-11 63.5
MS.gene030649.t1 AT5G44190 51.852 54 26 0 159 212 144 197 2.39e-11 64.3
MS.gene030649.t1 AT5G05090 50.000 58 29 0 161 218 80 137 3.08e-11 63.2
MS.gene030649.t1 AT3G10760 50.000 58 29 0 161 218 104 161 4.37e-11 63.5

Find 55 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATTTGATTCTCGATTAA+AGG 0.164354 4.3:-8590009 None:intergenic
GGAATATGGTATATTCAATT+AGG 0.202842 4.3:+8590812 MS.gene030649:CDS
AATTGCATCGACAATTTCTA+AGG 0.211162 4.3:+8590160 MS.gene030649:CDS
TGTTTCCATCAAAAGTTTAA+AGG 0.235719 4.3:-8589692 None:intergenic
CAAACGGGGCTTGCGAATAT+TGG 0.275266 4.3:+8589980 MS.gene030649:CDS
TCCAGTTACAACATGTTCTA+AGG 0.282036 4.3:+8589660 MS.gene030649:intron
ATCGCTTTATGAATTGCTTT+TGG 0.284723 4.3:-8590324 None:intergenic
TAAAGAATAGAAAGTCAAAA+AGG 0.285756 4.3:+8590529 MS.gene030649:CDS
ATTCTTTAGATGTGTCTCTT+TGG 0.286927 4.3:-8590514 None:intergenic
ACATTTCCACAACAGCATTA+AGG 0.328612 4.3:-8589489 None:intergenic
AGAAATTGTCGATGCAATTC+AGG 0.341097 4.3:-8590156 None:intergenic
GCACAACCTCCATCGGAATA+TGG 0.347834 4.3:+8590798 MS.gene030649:CDS
CTCTTAAATCCTCTGGGAAT+TGG 0.352622 4.3:-8589438 None:intergenic
GCAAGTTGCTAGCCATTTGC+AGG 0.355161 4.3:+8590371 MS.gene030649:CDS
CTAAGGGTTGTGAATGAACT+TGG 0.358456 4.3:+8590177 MS.gene030649:CDS
CATAAAGCGATGAATGTTCC+TGG 0.373937 4.3:+8590336 MS.gene030649:CDS
ATATACGATTCTTCTTCGTT+AGG 0.374538 4.3:-8590125 None:intergenic
TATACGATTCTTCTTCGTTA+GGG 0.386785 4.3:-8590124 None:intergenic
GAATATGGTATATTCAATTA+GGG 0.387647 4.3:+8590813 MS.gene030649:CDS
GAACTCAATTGTGTTTCGTT+AGG 0.423423 4.3:-8590588 None:intergenic
ACAAGAACTCTTAAATCCTC+TGG 0.429240 4.3:-8589445 None:intergenic
AACAAACCTTGATAATTGCT+TGG 0.435234 4.3:-8589517 None:intergenic
AGAGTTGTCGTTGCATTGTA+TGG 0.450449 4.3:-8590661 None:intergenic
TGACAGGAATATTGATTTGT+TGG 0.454324 4.3:-8589792 None:intergenic
TAAATCCTCTGGGAATTGGC+TGG 0.455635 4.3:-8589434 None:intergenic
TGATGAAAGCTGTTGCAAAC+GGG 0.461960 4.3:+8589965 MS.gene030649:CDS
ATAAACATAATCAAAGCAAA+AGG 0.469172 4.3:+8590073 MS.gene030649:CDS
TCTATTCCAAGCAATTATCA+AGG 0.472629 4.3:+8589511 MS.gene030649:CDS
AAATCATATGAATCCATGTC+TGG 0.476246 4.3:-8589754 None:intergenic
TAAACATAATCAAAGCAAAA+GGG 0.478480 4.3:+8590074 MS.gene030649:CDS
GTGATGAAAGCTGTTGCAAA+CGG 0.482441 4.3:+8589964 MS.gene030649:CDS
TATATATTCTTACTGATGAC+AGG 0.490720 4.3:-8589808 None:intergenic
GACAGGAATATTGATTTGTT+GGG 0.492437 4.3:-8589791 None:intergenic
CGAAGAAGAATCGTATATCA+TGG 0.494656 4.3:+8590130 MS.gene030649:CDS
TGATTTGTTGGGTAACATGT+CGG 0.535639 4.3:-8589780 None:intergenic
ATAGTGATGATGAATCATCT+TGG 0.538208 4.3:-8590770 None:intergenic
AGAGGATTTAAGAGTTCTTG+TGG 0.539349 4.3:+8589447 MS.gene030649:CDS
CAAGAACTCTTAAATCCTCT+GGG 0.542866 4.3:-8589444 None:intergenic
CATCTTGGATCATGTAGGAC+TGG 0.543187 4.3:-8590755 None:intergenic
TGAAGCTCAAATGCCAGACA+TGG 0.549847 4.3:+8589741 MS.gene030649:CDS
TGTGCAGTGATGTGTGATGA+TGG 0.552839 4.3:+8589928 MS.gene030649:intron
AAATCCTCTGGGAATTGGCT+GGG 0.555538 4.3:-8589433 None:intergenic
TGATGTCCTTAATGCTGTTG+TGG 0.557832 4.3:+8589483 MS.gene030649:CDS
ATACGAAGCACAACCTCCAT+CGG 0.580105 4.3:+8590791 MS.gene030649:CDS
ATACGATTCTTCTTCGTTAG+GGG 0.588904 4.3:-8590123 None:intergenic
AATATACCATATTCCGATGG+AGG 0.592529 4.3:-8590804 None:intergenic
ATTGCATCGACAATTTCTAA+GGG 0.597352 4.3:+8590161 MS.gene030649:CDS
AGAATCAAATCAAGAACATG+TGG 0.615053 4.3:+8590019 MS.gene030649:CDS
GATGAAAGCTGTTGCAAACG+GGG 0.621578 4.3:+8589966 MS.gene030649:CDS
AAACATAATCAAAGCAAAAG+GGG 0.630491 4.3:+8590075 MS.gene030649:CDS
TGAATCATCTTGGATCATGT+AGG 0.631847 4.3:-8590760 None:intergenic
TTGAATATACCATATTCCGA+TGG 0.640230 4.3:-8590807 None:intergenic
AACAAAGGGCTGTGTTGATG+TGG 0.643059 4.3:+8589711 MS.gene030649:CDS
ACATGTGGCAGTGTGTTGCA+AGG 0.672995 4.3:+8590034 MS.gene030649:CDS
ACTTCCCAGCCAATTCCCAG+AGG 0.715638 4.3:+8589429 MS.gene030649:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAGAGAAAATAAAAATTAT+TGG - chr4.3:8590225-8590244 None:intergenic 15.0%
!! AAAGAATAGAAAGTCAAAAA+GGG + chr4.3:8590530-8590549 MS.gene030649:CDS 20.0%
!! ATAAACATAATCAAAGCAAA+AGG + chr4.3:8590073-8590092 MS.gene030649:CDS 20.0%
!! TAAACATAATCAAAGCAAAA+GGG + chr4.3:8590074-8590093 MS.gene030649:CDS 20.0%
!! TAAAGAATAGAAAGTCAAAA+AGG + chr4.3:8590529-8590548 MS.gene030649:CDS 20.0%
!!! TGTTTTTTGTATTAATGTAG+TGG + chr4.3:8590396-8590415 MS.gene030649:intron 20.0%
! AAACATAATCAAAGCAAAAG+GGG + chr4.3:8590075-8590094 MS.gene030649:CDS 25.0%
! AAGAATAGAAAGTCAAAAAG+GGG + chr4.3:8590531-8590550 MS.gene030649:CDS 25.0%
! GAAAAAGAATCTTACTATCA+AGG - chr4.3:8590203-8590222 None:intergenic 25.0%
! TATATATTCTTACTGATGAC+AGG - chr4.3:8589811-8589830 None:intergenic 25.0%
! TGTTTCCATCAAAAGTTTAA+AGG - chr4.3:8589695-8589714 None:intergenic 25.0%
!! AAACTTTTGATGGAAACAAA+GGG + chr4.3:8589697-8589716 MS.gene030649:CDS 25.0%
!! CTGAGTTCATTAAATTTTCT+GGG - chr4.3:8590641-8590660 None:intergenic 25.0%
!! TAAACTTTTGATGGAAACAA+AGG + chr4.3:8589696-8589715 MS.gene030649:CDS 25.0%
!! TTGATTTGATTCTCGATTAA+AGG - chr4.3:8590012-8590031 None:intergenic 25.0%
!! TTTTGCCTTTAAACTTTTGA+TGG + chr4.3:8589687-8589706 MS.gene030649:CDS 25.0%
AAATCATATGAATCCATGTC+TGG - chr4.3:8589757-8589776 None:intergenic 30.0%
ACAAAAAACAAACCTGCAAA+TGG - chr4.3:8590386-8590405 None:intergenic 30.0%
AGAATAGAAAGTCAAAAAGG+GGG + chr4.3:8590532-8590551 MS.gene030649:CDS 30.0%
AGAATCAAATCAAGAACATG+TGG + chr4.3:8590019-8590038 MS.gene030649:CDS 30.0%
ATATACGATTCTTCTTCGTT+AGG - chr4.3:8590128-8590147 None:intergenic 30.0%
ATTCTTTAGATGTGTCTCTT+TGG - chr4.3:8590517-8590536 None:intergenic 30.0%
CAAAAGTTCAAGAATTTCAC+AGG - chr4.3:8589596-8589615 None:intergenic 30.0%
TATACGATTCTTCTTCGTTA+GGG - chr4.3:8590127-8590146 None:intergenic 30.0%
TCTATTCCAAGCAATTATCA+AGG + chr4.3:8589511-8589530 MS.gene030649:CDS 30.0%
TTGAATATACCATATTCCGA+TGG - chr4.3:8590810-8590829 None:intergenic 30.0%
! AACAAACCTTGATAATTGCT+TGG - chr4.3:8589520-8589539 None:intergenic 30.0%
! AATTGCATCGACAATTTCTA+AGG + chr4.3:8590160-8590179 MS.gene030649:CDS 30.0%
! ATAGTGATGATGAATCATCT+TGG - chr4.3:8590773-8590792 None:intergenic 30.0%
! ATCGCTTTATGAATTGCTTT+TGG - chr4.3:8590327-8590346 None:intergenic 30.0%
! ATTGCATCGACAATTTCTAA+GGG + chr4.3:8590161-8590180 MS.gene030649:CDS 30.0%
! CTGTGAAATTCTTGAACTTT+TGG + chr4.3:8589594-8589613 MS.gene030649:intron 30.0%
! GCTGAGTTCATTAAATTTTC+TGG - chr4.3:8590642-8590661 None:intergenic 30.0%
!! GACAGGAATATTGATTTGTT+GGG - chr4.3:8589794-8589813 None:intergenic 30.0%
!! TGACAGGAATATTGATTTGT+TGG - chr4.3:8589795-8589814 None:intergenic 30.0%
AATATACCATATTCCGATGG+AGG - chr4.3:8590807-8590826 None:intergenic 35.0%
ACAAGAACTCTTAAATCCTC+TGG - chr4.3:8589448-8589467 None:intergenic 35.0%
ACATTTCCACAACAGCATTA+AGG - chr4.3:8589492-8589511 None:intergenic 35.0%
AGAAATTGTCGATGCAATTC+AGG - chr4.3:8590159-8590178 None:intergenic 35.0%
AGAGGATTTAAGAGTTCTTG+TGG + chr4.3:8589447-8589466 MS.gene030649:CDS 35.0%
ATACGATTCTTCTTCGTTAG+GGG - chr4.3:8590126-8590145 None:intergenic 35.0%
CAAGAACTCTTAAATCCTCT+GGG - chr4.3:8589447-8589466 None:intergenic 35.0%
CGAAGAAGAATCGTATATCA+TGG + chr4.3:8590130-8590149 MS.gene030649:CDS 35.0%
GAACTCAATTGTGTTTCGTT+AGG - chr4.3:8590591-8590610 None:intergenic 35.0%
GGAGAGACAAAAATTTACAC+AGG - chr4.3:8590284-8590303 None:intergenic 35.0%
TAGAACATGTTGTAACTGGA+AGG - chr4.3:8589660-8589679 None:intergenic 35.0%
TCCAGTTACAACATGTTCTA+AGG + chr4.3:8589660-8589679 MS.gene030649:intron 35.0%
TGAATCATCTTGGATCATGT+AGG - chr4.3:8590763-8590782 None:intergenic 35.0%
! ACTTGCTCTTTTGTAAAACC+AGG - chr4.3:8590357-8590376 None:intergenic 35.0%
! GCTTTGCCTCTGAAAAATAA+GGG - chr4.3:8590305-8590324 None:intergenic 35.0%
!! TGATTTGTTGGGTAACATGT+CGG - chr4.3:8589783-8589802 None:intergenic 35.0%
AGAGTTGTCGTTGCATTGTA+TGG - chr4.3:8590664-8590683 None:intergenic 40.0%
ATAGAAAGTCAAAAAGGGGG+CGG + chr4.3:8590535-8590554 MS.gene030649:CDS 40.0%
CATAAAGCGATGAATGTTCC+TGG + chr4.3:8590336-8590355 MS.gene030649:CDS 40.0%
CTAAGGGTTGTGAATGAACT+TGG + chr4.3:8590177-8590196 MS.gene030649:CDS 40.0%
GCCTTAGAACATGTTGTAAC+TGG - chr4.3:8589664-8589683 None:intergenic 40.0%
GTGATGAAAGCTGTTGCAAA+CGG + chr4.3:8589964-8589983 MS.gene030649:CDS 40.0%
TGATGAAAGCTGTTGCAAAC+GGG + chr4.3:8589965-8589984 MS.gene030649:CDS 40.0%
TGATGTCCTTAATGCTGTTG+TGG + chr4.3:8589483-8589502 MS.gene030649:CDS 40.0%
! CTCTTAAATCCTCTGGGAAT+TGG - chr4.3:8589441-8589460 None:intergenic 40.0%
! GGCTTTGCCTCTGAAAAATA+AGG - chr4.3:8590306-8590325 None:intergenic 40.0%
!! GGACTGGTCAGTAAAAATGT+TGG - chr4.3:8590742-8590761 None:intergenic 40.0%
!!! GTCTCTCCCTTATTTTTCAG+AGG + chr4.3:8590296-8590315 MS.gene030649:intron 40.0%
ATACGAAGCACAACCTCCAT+CGG + chr4.3:8590791-8590810 MS.gene030649:CDS 45.0%
CATCTTGGATCATGTAGGAC+TGG - chr4.3:8590758-8590777 None:intergenic 45.0%
GATGAAAGCTGTTGCAAACG+GGG + chr4.3:8589966-8589985 MS.gene030649:CDS 45.0%
TGAAGCTCAAATGCCAGACA+TGG + chr4.3:8589741-8589760 MS.gene030649:CDS 45.0%
TGTGCAGTGATGTGTGATGA+TGG + chr4.3:8589928-8589947 MS.gene030649:intron 45.0%
! AAATCCTCTGGGAATTGGCT+GGG - chr4.3:8589436-8589455 None:intergenic 45.0%
! AACAAAGGGCTGTGTTGATG+TGG + chr4.3:8589711-8589730 MS.gene030649:CDS 45.0%
! TAAATCCTCTGGGAATTGGC+TGG - chr4.3:8589437-8589456 None:intergenic 45.0%
ACATGTGGCAGTGTGTTGCA+AGG + chr4.3:8590034-8590053 MS.gene030649:CDS 50.0%
CAAACGGGGCTTGCGAATAT+TGG + chr4.3:8589980-8589999 MS.gene030649:CDS 50.0%
GCAAGTTGCTAGCCATTTGC+AGG + chr4.3:8590371-8590390 MS.gene030649:CDS 50.0%
GCACAACCTCCATCGGAATA+TGG + chr4.3:8590798-8590817 MS.gene030649:CDS 50.0%
ACTTCCCAGCCAATTCCCAG+AGG + chr4.3:8589429-8589448 MS.gene030649:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 8589403 8590833 8589403 ID=MS.gene030649
chr4.3 mRNA 8589403 8590833 8589403 ID=MS.gene030649.t1;Parent=MS.gene030649
chr4.3 exon 8589403 8589532 8589403 ID=MS.gene030649.t1.exon1;Parent=MS.gene030649.t1
chr4.3 CDS 8589403 8589532 8589403 ID=cds.MS.gene030649.t1;Parent=MS.gene030649.t1
chr4.3 exon 8589665 8589817 8589665 ID=MS.gene030649.t1.exon2;Parent=MS.gene030649.t1
chr4.3 CDS 8589665 8589817 8589665 ID=cds.MS.gene030649.t1;Parent=MS.gene030649.t1
chr4.3 exon 8589935 8590207 8589935 ID=MS.gene030649.t1.exon3;Parent=MS.gene030649.t1
chr4.3 CDS 8589935 8590207 8589935 ID=cds.MS.gene030649.t1;Parent=MS.gene030649.t1
chr4.3 exon 8590316 8590392 8590316 ID=MS.gene030649.t1.exon4;Parent=MS.gene030649.t1
chr4.3 CDS 8590316 8590392 8590316 ID=cds.MS.gene030649.t1;Parent=MS.gene030649.t1
chr4.3 exon 8590486 8590833 8590486 ID=MS.gene030649.t1.exon5;Parent=MS.gene030649.t1
chr4.3 CDS 8590486 8590833 8590486 ID=cds.MS.gene030649.t1;Parent=MS.gene030649.t1
Gene Sequence

>MS.gene030649

ATGGCTCTTTTTAACGATATAGAGTCACTTCCCAGCCAATTCCCAGAGGATTTAAGAGTTCTTGTGGTTGATCATGACACTGATGTCCTTAATGCTGTTGTGGAAATGTCTATTCCAAGCAATTATCAAGGTTTGTTAATTAATTTATCATATATACTTTGTTCAATTGCAGATTAAATTATGTTATTAACCTGTGAAATTCTTGAACTTTTGGCATAATTTCTTACTTGTGTATTTTTATGTATTCTTTTTTTCCTTCCAGTTACAACATGTTCTAAGGCTTCTTTTGCCTTTAAACTTTTGATGGAAACAAAGGGCTGTGTTGATGTGGTACTAATTGAAGCTCAAATGCCAGACATGGATTCATATGATTTTGTCCGACATGTTACCCAACAAATCAATATTCCTGTCATCAGTAAGAATATATATAATTAACTATATTACAAAATTATATCACATAATTAATTTATTCATATACTTATGTATGACATTGTTATTTATTATTTAATTATAATGTTAATTACATGTGCAGTGATGTGTGATGATGGATCAACAAGTGCAGTGATGAAAGCTGTTGCAAACGGGGCTTGCGAATATTGGATTAAGCCTTTAATCGAGAATCAAATCAAGAACATGTGGCAGTGTGTTGCAAGGAAATTTTTCAATGAAAATAAACATAATCAAAGCAAAAGGGGAAGAGATGATAATGCTAATTATCAACCCCTAACGAAGAAGAATCGTATATCATGGACACCTGAATTGCATCGACAATTTCTAAGGGTTGTGAATGAACTTGGCCTTGATAGTAAGATTCTTTTTCCAATAATTTTTATTTTCTCTCTCTTATTTTCTTTATTTGTATACTTCAAGAAACTAAACCTGTGTAAATTTTTGTCTCTCCCTTATTTTTCAGAGGCAAAGCCAAAAGCAATTCATAAAGCGATGAATGTTCCTGGTTTTACAAAAGAGCAAGTTGCTAGCCATTTGCAGGTTTGTTTTTTGTATTAATGTAGTGGTAGTGATTTTGTTTTGTGTGATTTTAAATTATAATTTATATTAACATTAAGATTTGAATATTGACAGAGAGTGATACTTGATTTGAAGAGTTCAACCAAAGAGACACATCTAAAGAATAGAAAGTCAAAAAGGGGGCGGAAAAAATCAAAGTTTGATCAATATGATGTTCCTAACGAAACACAATTGAGTTCTGAAGCTGTTCACTCAATACAACAAGACCCAGAAAATTTAATGAACTCAGCCATACAATGCAACGACAACTCTCATGCACAACAAGATCTGATGACATTCGACGATTATGAAGATTTTGACATTATTGCCAACATTTTTACTGACCAGTCCTACATGATCCAAGATGATTCATCATCACTATACGAAGCACAACCTCCATCGGAATATGGTATATTCAATTAG
Protein sequence

>MS.gene030649.t1

MALFNDIESLPSQFPEDLRVLVVDHDTDVLNAVVEMSIPSNYQVTTCSKASFAFKLLMETKGCVDVVLIEAQMPDMDSYDFVRHVTQQINIPVIMMCDDGSTSAVMKAVANGACEYWIKPLIENQIKNMWQCVARKFFNENKHNQSKRGRDDNANYQPLTKKNRISWTPELHRQFLRVVNELGLDKAKPKAIHKAMNVPGFTKEQVASHLQRVILDLKSSTKETHLKNRKSKRGRKKSKFDQYDVPNETQLSSEAVHSIQQDPENLMNSAIQCNDNSHAQQDLMTFDDYEDFDIIANIFTDQSYMIQDDSSSLYEAQPPSEYGIFN