Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030720.t1 | XP_024629483.1 | 92.8 | 724 | 42 | 4 | 499 | 1218 | 43 | 760 | 5.00E-308 | 1067.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030720.t1 | O94481 | 28.6 | 175 | 111 | 3 | 1032 | 1205 | 353 | 514 | 8.2e-09 | 64.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030720.t1 | A0A396GS65 | 92.4 | 727 | 42 | 5 | 499 | 1218 | 43 | 763 | 1.5e-306 | 1062.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene030720.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030720.t1 | MTR_8g091830 | 94.241 | 764 | 18 | 7 | 459 | 1218 | 17 | 758 | 0.0 | 1435 |
| MS.gene030720.t1 | MTR_8g091830 | 57.461 | 449 | 122 | 12 | 63 | 460 | 326 | 756 | 2.00e-112 | 369 |
| MS.gene030720.t1 | MTR_8g091830 | 67.089 | 79 | 22 | 1 | 2 | 76 | 67 | 145 | 3.05e-19 | 94.4 |
| MS.gene030720.t1 | MTR_8g091830 | 94.452 | 757 | 18 | 6 | 459 | 1211 | 17 | 753 | 0.0 | 1428 |
| MS.gene030720.t1 | MTR_8g091830 | 57.978 | 445 | 118 | 12 | 63 | 456 | 328 | 754 | 5.28e-110 | 365 |
| MS.gene030720.t1 | MTR_8g091830 | 67.089 | 79 | 22 | 1 | 2 | 76 | 69 | 147 | 4.56e-19 | 94.0 |
| MS.gene030720.t1 | MTR_8g091850 | 73.234 | 269 | 44 | 2 | 110 | 373 | 48 | 293 | 1.81e-121 | 377 |
| MS.gene030720.t1 | MTR_8g091850 | 55.853 | 299 | 67 | 4 | 825 | 1122 | 57 | 291 | 2.22e-80 | 266 |
| MS.gene030720.t1 | MTR_4g067250 | 53.960 | 404 | 147 | 11 | 822 | 1218 | 209 | 580 | 1.45e-95 | 318 |
| MS.gene030720.t1 | MTR_4g067250 | 44.556 | 496 | 169 | 16 | 8 | 460 | 146 | 578 | 1.28e-85 | 290 |
| MS.gene030720.t1 | MTR_8g091840 | 94.915 | 59 | 2 | 1 | 403 | 460 | 5 | 63 | 9.50e-31 | 115 |
| MS.gene030720.t1 | MTR_8g091840 | 59.701 | 67 | 19 | 4 | 1154 | 1218 | 5 | 65 | 6.92e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030720.t1 | AT4G39160 | 28.905 | 557 | 299 | 17 | 630 | 1139 | 15 | 521 | 1.74e-43 | 169 |
| MS.gene030720.t1 | AT4G39160 | 37.344 | 241 | 133 | 7 | 158 | 387 | 288 | 521 | 1.11e-31 | 132 |
| MS.gene030720.t1 | AT4G39160 | 28.905 | 557 | 299 | 17 | 630 | 1139 | 15 | 521 | 1.74e-43 | 169 |
| MS.gene030720.t1 | AT4G39160 | 37.344 | 241 | 133 | 7 | 158 | 387 | 288 | 521 | 1.11e-31 | 132 |
| MS.gene030720.t1 | AT4G39160 | 28.905 | 557 | 299 | 17 | 630 | 1139 | 15 | 521 | 2.33e-43 | 169 |
| MS.gene030720.t1 | AT4G39160 | 37.344 | 241 | 133 | 7 | 158 | 387 | 288 | 521 | 1.54e-31 | 132 |
Find 226 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAACAGCCTTGTTAAA+TGG | 0.149899 | 4.3:-9419400 | None:intergenic |
| CCAATATTCCTAACCCTTTC+CGG | 0.169829 | 4.3:-9425461 | None:intergenic |
| TGTTGATGCGCTTGTCTTCT+TGG | 0.180256 | 4.3:-9426911 | None:intergenic |
| TGCATTGGAATTTCAGATAT+TGG | 0.186110 | 4.3:-9418160 | None:intergenic |
| CTTCTATTATCTTCAGAAAA+TGG | 0.204672 | 4.3:-9425734 | None:intergenic |
| TCGATCACCGATTTATAAAA+AGG | 0.211257 | 4.3:-9421236 | None:intergenic |
| GAAGAAATCAGTGGCTAAAA+AGG | 0.211844 | 4.3:+9426942 | MS.gene030720:CDS |
| TCCTAACCCTTTCCGGTTCC+AGG | 0.250680 | 4.3:-9425454 | None:intergenic |
| ATCAACGAACAATACCTATT+AGG | 0.275169 | 4.3:+9427188 | MS.gene030720:CDS |
| AAAGACTGGTTATTATATAA+AGG | 0.275999 | 4.3:-9420706 | None:intergenic |
| CCCTTTCCGGTTCCAGGATC+AGG | 0.297732 | 4.3:-9425448 | None:intergenic |
| TCTAGGTCGTGGCTTAATCT+TGG | 0.307370 | 4.3:-9425563 | None:intergenic |
| GATCTTCTATGCTTCTTTAG+AGG | 0.313417 | 4.3:-9419295 | None:intergenic |
| GACCCTCCTTATGTTATTGA+TGG | 0.314436 | 4.3:+9426841 | MS.gene030720:CDS |
| ATTGAATTACCAGTCTTTCA+TGG | 0.319869 | 4.3:+9428513 | MS.gene030720:CDS |
| TGGATCAATGCCAGATTTCA+TGG | 0.322835 | 4.3:-9426457 | None:intergenic |
| ACAGAAACAAACTTCTAATA+AGG | 0.327322 | 4.3:+9421262 | MS.gene030720:CDS |
| TCAGCCAATGTGGGACTATC+TGG | 0.334761 | 4.3:-9426519 | None:intergenic |
| ACAGAAACAAAATTCTAATA+AGG | 0.334895 | 4.3:+9429042 | MS.gene030720:CDS |
| GCGGGCTTCAAAAGCGCTTC+AGG | 0.341307 | 4.3:+9425229 | MS.gene030720:CDS |
| TCAACGAACAATACCTATTA+GGG | 0.342822 | 4.3:+9427189 | MS.gene030720:CDS |
| AGACGATACCGAAGAGAAAA+AGG | 0.345945 | 4.3:+9418239 | MS.gene030720:CDS |
| AAGACTGGTTATTATATAAA+GGG | 0.352288 | 4.3:-9420705 | None:intergenic |
| GATGCCTCAGATTTAATGAT+AGG | 0.358895 | 4.3:+9429082 | MS.gene030720:CDS |
| ATATAGGCTATTAGGCAGTT+TGG | 0.359903 | 4.3:+9428717 | MS.gene030720:intron |
| AGTAAAATAATATCCCTAAT+AGG | 0.364611 | 4.3:-9427202 | None:intergenic |
| TCTTGACAGCAACAAGAGTT+TGG | 0.369143 | 4.3:+9425171 | MS.gene030720:CDS |
| ACTCTGAAGGCATAGCATTC+AGG | 0.370180 | 4.3:-9425790 | None:intergenic |
| CCTCAACAGCCTTGTTAAAT+GGG | 0.374079 | 4.3:-9419399 | None:intergenic |
| CTGTCGCAAACCTTAGTTCC+AGG | 0.375034 | 4.3:-9429124 | None:intergenic |
| GGTGGTTTGGGCTTAGCCTT+AGG | 0.384423 | 4.3:-9424346 | None:intergenic |
| AATGAACCTTCCCCATTTGT+AGG | 0.385631 | 4.3:-9425148 | None:intergenic |
| CATAAAATATCTTCTATTGC+TGG | 0.387802 | 4.3:+9426712 | MS.gene030720:CDS |
| AAAGACTGGTAATTCAATAA+AGG | 0.392051 | 4.3:-9428508 | None:intergenic |
| TAAAGATCAAGAAGATTCTA+TGG | 0.395924 | 4.3:+9429883 | MS.gene030720:CDS |
| AGTGTTAGTGTACCTTTGAT+TGG | 0.396209 | 4.3:-9427379 | None:intergenic |
| TCAATGGGGCAGTCAGGATC+AGG | 0.398869 | 4.3:-9426411 | None:intergenic |
| TTTGTCAAGCCTTCATGCCT+TGG | 0.399449 | 4.3:-9426492 | None:intergenic |
| GCTTCTGCTTCTGCTTCATC+TGG | 0.399801 | 4.3:+9425607 | MS.gene030720:CDS |
| AACAAAGAACTGCCTACAAA+TGG | 0.403333 | 4.3:+9425136 | MS.gene030720:CDS |
| AGTGATGTCCTCCCTGATCC+TGG | 0.404496 | 4.3:+9425436 | MS.gene030720:CDS |
| TCGTCAGATTGCTCTGGAAC+TGG | 0.405106 | 4.3:-9429911 | None:intergenic |
| CTAGGTCGTGGCTTAATCTT+GGG | 0.405320 | 4.3:-9425562 | None:intergenic |
| ATATAATAACCAGTCTTTCA+AGG | 0.406319 | 4.3:+9420711 | MS.gene030720:CDS |
| CTTAAATCTTTCAATGTGAA+TGG | 0.409452 | 4.3:+9426205 | MS.gene030720:CDS |
| AGCATTATGAGAATCATGTT+TGG | 0.410582 | 4.3:-9424473 | None:intergenic |
| ACAAGGCACCTAGGGGAAAA+TGG | 0.411092 | 4.3:+9428536 | MS.gene030720:CDS |
| GATTATCAATCCATGAAATC+TGG | 0.414632 | 4.3:+9426447 | MS.gene030720:CDS |
| TCCCATGGAAAATCAAATTC+CGG | 0.417667 | 4.3:+9422093 | MS.gene030720:CDS |
| CATAGTGGACAAGGCTCTGC+TGG | 0.417669 | 4.3:+9419745 | MS.gene030720:intron |
| CATAGTGGACAAGGCTCTGC+TGG | 0.417669 | 4.3:+9427150 | MS.gene030720:intron |
| AGAGGTTGCAACAGCTGAGC+AGG | 0.420001 | 4.3:+9429841 | MS.gene030720:CDS |
| TGCCTTGGAATTTCAGATGT+TGG | 0.423028 | 4.3:-9426477 | None:intergenic |
| GGCTAATGATGATTTAGAAA+AGG | 0.423170 | 4.3:+9419585 | MS.gene030720:CDS |
| GCATTATGAGAATCATGTTT+GGG | 0.424036 | 4.3:-9424472 | None:intergenic |
| CAAAAGTAGGTCGGAAATAC+AGG | 0.424081 | 4.3:+9426264 | MS.gene030720:CDS |
| GAGAGGCAGGTTTGCGCCTA+AGG | 0.424149 | 4.3:+9424330 | MS.gene030720:CDS |
| CCACATAGAAGTTGAAGATC+AGG | 0.425203 | 4.3:+9422066 | MS.gene030720:CDS |
| AAACCTTAGTTCCAGGTGTT+GGG | 0.426302 | 4.3:-9429117 | None:intergenic |
| CATAGAAGATCTCCTATTGC+TGG | 0.429813 | 4.3:+9419307 | MS.gene030720:CDS |
| ATTGCTGGTGTGGAGGATAA+AGG | 0.436946 | 4.3:+9419322 | MS.gene030720:CDS |
| ACAAGACACCTAGGGCAAAA+TGG | 0.437516 | 4.3:+9420734 | MS.gene030720:CDS |
| ACAAAGAACTGCCTACAAAT+GGG | 0.438146 | 4.3:+9425137 | MS.gene030720:CDS |
| GTCAAAGCTTCTTCATGCAT+TGG | 0.440699 | 4.3:-9418175 | None:intergenic |
| CAAACCTTAGTTCCAGGTGT+TGG | 0.441707 | 4.3:-9429118 | None:intergenic |
| ACATTGAAAGATTTAAGATC+TGG | 0.441714 | 4.3:-9426199 | None:intergenic |
| TTATCCTCCACACCAGCAAT+AGG | 0.442858 | 4.3:-9419319 | None:intergenic |
| GCTTTGAACAATCATGCAAC+AGG | 0.445071 | 4.3:+9421061 | MS.gene030720:CDS |
| GTCCTCCCTGATCCTGGAAC+CGG | 0.446592 | 4.3:+9425442 | MS.gene030720:CDS |
| ACAGCATTAGCAAGGAAAAC+AGG | 0.453889 | 4.3:-9417962 | None:intergenic |
| CAGTTCTTCCATCCTACCTA+TGG | 0.454716 | 4.3:-9418032 | None:intergenic |
| CCTGATCCTGGAACCGGAAA+GGG | 0.454744 | 4.3:+9425448 | MS.gene030720:CDS |
| GGACCCAACACCTGGAACTA+AGG | 0.455739 | 4.3:+9429114 | MS.gene030720:CDS |
| ATGGTTAAGCGAGTAGTTGA+TGG | 0.457692 | 4.3:-9418013 | None:intergenic |
| GATGCCTCGGATTTCATGCC+AGG | 0.457944 | 4.3:+9421305 | MS.gene030720:CDS |
| AAAGGTTGCAACAGCTGAGC+AGG | 0.459179 | 4.3:+9422042 | MS.gene030720:CDS |
| ACTGATTTACCAAAGCTAGA+AGG | 0.460360 | 4.3:-9425842 | None:intergenic |
| GCTAATGATGATTTAGAAAA+GGG | 0.461578 | 4.3:+9419586 | MS.gene030720:CDS |
| GCCATGAATAATCGTGGAAA+AGG | 0.463451 | 4.3:+9428846 | MS.gene030720:CDS |
| GGATTTCATGCCAGGGGAGG+TGG | 0.466274 | 4.3:+9421313 | MS.gene030720:CDS |
| ACATTGTCAATGGGGCAGTC+AGG | 0.469696 | 4.3:-9426417 | None:intergenic |
| GAGAAAGAAATGAGCATACT+TGG | 0.469710 | 4.3:-9418502 | None:intergenic |
| GGGTCTTCAACCACCTCCCC+TGG | 0.469715 | 4.3:-9421323 | None:intergenic |
| TGCAACAGCTGAGCAGGAGC+AGG | 0.470277 | 4.3:+9429847 | MS.gene030720:CDS |
| ATTGCTGGTGTGGAGGATAA+AGG | 0.470324 | 4.3:+9426727 | MS.gene030720:CDS |
| GTGTCTTGTCCTTGAAAGAC+TGG | 0.471184 | 4.3:-9420720 | None:intergenic |
| TCATCATAGACATTGTCAAT+GGG | 0.474029 | 4.3:-9426426 | None:intergenic |
| ACATTCTCTACAGCATTAGC+AGG | 0.476336 | 4.3:-9425067 | None:intergenic |
| CCCATTTAACAAGGCTGTTG+AGG | 0.477110 | 4.3:+9419399 | MS.gene030720:CDS |
| GTATCTACTACTGACTCAAT+AGG | 0.477186 | 4.3:+9425109 | MS.gene030720:CDS |
| TCATTGAATGAGGCTGTTAA+CGG | 0.478665 | 4.3:+9426805 | MS.gene030720:CDS |
| GAGAATGAGGACCCAACACC+TGG | 0.480041 | 4.3:+9429106 | MS.gene030720:CDS |
| AATAACTTGCAAACTTTCGT+TGG | 0.480571 | 4.3:-9418086 | None:intergenic |
| CAGTATCGTCTTGCTGCAAA+AGG | 0.489581 | 4.3:-9426542 | None:intergenic |
| TTCTGAAGATAATAGAAGCT+TGG | 0.493783 | 4.3:+9425739 | MS.gene030720:CDS |
| ATCATCATAGACATTGTCAA+TGG | 0.494759 | 4.3:-9426427 | None:intergenic |
| TTCTTCGCCGAGATGAATGC+GGG | 0.496692 | 4.3:-9419633 | None:intergenic |
| ATTCTCAACCATGATGCAAC+TGG | 0.501051 | 4.3:+9425989 | MS.gene030720:CDS |
| TGACGTAGTGTACCTTTGAT+TGG | 0.502991 | 4.3:-9419982 | None:intergenic |
| AACCATGATGCAACTGGTAC+AGG | 0.505460 | 4.3:+9425995 | MS.gene030720:CDS |
| CTTGATCTTTAACATTGATG+TGG | 0.506223 | 4.3:-9429871 | None:intergenic |
| GGCTAATGATGATTCAGAAA+AGG | 0.506523 | 4.3:+9426990 | MS.gene030720:CDS |
| TCATCTCCATCAATAACATA+AGG | 0.510363 | 4.3:-9426847 | None:intergenic |
| TCACTATCGTCAGATTGCTC+TGG | 0.510890 | 4.3:-9429917 | None:intergenic |
| CTTGTCTGCGGAAATCGAGC+TGG | 0.511468 | 4.3:+9425405 | MS.gene030720:CDS |
| TAGCATTCAGGAAGTCAGAA+TGG | 0.511956 | 4.3:-9425778 | None:intergenic |
| TATTAGACGTGCAGAACGTA+TGG | 0.514226 | 4.3:+9419811 | MS.gene030720:CDS |
| ATACATTAGTTCCATGTGTC+GGG | 0.514518 | 4.3:-9421343 | None:intergenic |
| TTTCATGGACAAGGCACCTA+GGG | 0.515232 | 4.3:+9428528 | MS.gene030720:CDS |
| AATAAGGAAGAAGATACTGC+TGG | 0.517268 | 4.3:+9429058 | MS.gene030720:CDS |
| ATGCCTCAGATTTAATGATA+GGG | 0.518508 | 4.3:+9429083 | MS.gene030720:CDS |
| CCCTGATCCTGGAACCGGAA+AGG | 0.518602 | 4.3:+9425447 | MS.gene030720:CDS |
| GCAGAAGCAGAAGCAGTAGC+TGG | 0.523053 | 4.3:-9425598 | None:intergenic |
| ATGATACAACTGAGTTTCCC+TGG | 0.524533 | 4.3:+9420965 | MS.gene030720:CDS |
| CCTGATCTTCAACTTCTATG+TGG | 0.526256 | 4.3:-9422066 | None:intergenic |
| GTGCCTTGTCCATGAAAGAC+TGG | 0.528971 | 4.3:-9428522 | None:intergenic |
| GCATCATATAACCACTGTAA+AGG | 0.531639 | 4.3:-9421040 | None:intergenic |
| AAGAAATGAGCATACTTGGT+TGG | 0.532901 | 4.3:-9418498 | None:intergenic |
| ATGGCATCAGTTAACAGTAA+AGG | 0.533326 | 4.3:-9428828 | None:intergenic |
| TTTAATGATAGGGGAGAATG+AGG | 0.536462 | 4.3:+9429093 | MS.gene030720:CDS |
| AAAAGTTCCCGCATTCATCT+CGG | 0.541414 | 4.3:+9419626 | MS.gene030720:CDS |
| CCTTTCCGGTTCCAGGATCA+GGG | 0.543738 | 4.3:-9425447 | None:intergenic |
| TAGAGATGAATTTAGAGACC+TGG | 0.547077 | 4.3:+9428444 | MS.gene030720:CDS |
| GCTGATATCGATGTCAATAA+CGG | 0.547205 | 4.3:+9424493 | MS.gene030720:CDS |
| CTGCAAAAGGTCAGCCAATG+TGG | 0.547743 | 4.3:-9426529 | None:intergenic |
| CATACATTAGTTCCATGTGT+CGG | 0.547764 | 4.3:-9421344 | None:intergenic |
| AGCATTCAGGAAGTCAGAAT+GGG | 0.548782 | 4.3:-9425777 | None:intergenic |
| TGCAGAACATAAGGAGCGGT+TGG | 0.551127 | 4.3:+9427225 | MS.gene030720:CDS |
| AATATCTTCTATTGCTGGTG+TGG | 0.552691 | 4.3:+9426717 | MS.gene030720:CDS |
| GTGTACCTTTGATTGGTGGA+AGG | 0.552725 | 4.3:-9427372 | None:intergenic |
| CTTTCATGGACAAGGCACCT+AGG | 0.554899 | 4.3:+9428527 | MS.gene030720:CDS |
| TCACTATCATCAGATTGCTC+CGG | 0.557302 | 4.3:-9422112 | None:intergenic |
| CACCTGTACCAGTTGCATCA+TGG | 0.562328 | 4.3:-9425997 | None:intergenic |
| TGGCTCGATCATCATCATCC+AGG | 0.563395 | 4.3:-9428462 | None:intergenic |
| TCTGAAATTCCAAGGCATGA+AGG | 0.563472 | 4.3:+9426483 | MS.gene030720:CDS |
| AAGATCTCCTATTGCTGGTG+TGG | 0.563647 | 4.3:+9419312 | MS.gene030720:CDS |
| ATCTCCTATTGCTGGTGTGG+AGG | 0.564088 | 4.3:+9419315 | MS.gene030720:CDS |
| AGAACATAAGGAGCGGTTGG+CGG | 0.564104 | 4.3:+9427228 | MS.gene030720:CDS |
| TCGCTTAACCATAGGTAGGA+TGG | 0.564291 | 4.3:+9418024 | MS.gene030720:CDS |
| ATCTTCTATTGCTGGTGTGG+AGG | 0.566330 | 4.3:+9426720 | MS.gene030720:CDS |
| TGAAGATCAGGAAGATCCCA+TGG | 0.569852 | 4.3:+9422078 | MS.gene030720:CDS |
| TTTATATGCATGCAGTGACA+GGG | 0.572330 | 4.3:+9420594 | MS.gene030720:intron |
| TTTCTTCGCCGAGATGAATG+CGG | 0.572858 | 4.3:-9419634 | None:intergenic |
| CGTAGTGTACCTTTGATTGG+TGG | 0.573053 | 4.3:-9419979 | None:intergenic |
| GTTAGTGTACCTTTGATTGG+TGG | 0.573797 | 4.3:-9427376 | None:intergenic |
| ATCCAACATCTGAAATTCCA+AGG | 0.574184 | 4.3:+9426475 | MS.gene030720:CDS |
| AGATACCGCTAGAGATGCCT+CGG | 0.577005 | 4.3:+9421292 | MS.gene030720:CDS |
| CTCCCCTATCATTAAATCTG+AGG | 0.577536 | 4.3:-9429086 | None:intergenic |
| TGCAGAACGTATGGAGCGAT+CGG | 0.579460 | 4.3:+9419820 | MS.gene030720:CDS |
| TCTCCATCAATAACATAAGG+AGG | 0.580123 | 4.3:-9426844 | None:intergenic |
| TCGTGAACTGCAGACTCTGA+AGG | 0.582141 | 4.3:-9425803 | None:intergenic |
| CAGGATACGATGGCAAAAGT+AGG | 0.587039 | 4.3:+9426251 | MS.gene030720:CDS |
| TCAACTACTCGCTTAACCAT+AGG | 0.587367 | 4.3:+9418016 | MS.gene030720:CDS |
| AGACTGGTTATTATATAAAG+GGG | 0.587808 | 4.3:-9420704 | None:intergenic |
| TGCCTCAGATTTAATGATAG+GGG | 0.588626 | 4.3:+9429084 | MS.gene030720:CDS |
| CGAGGATGCTAATAATGAAG+AGG | 0.589996 | 4.3:+9420627 | MS.gene030720:CDS |
| TGAGTTTGGAGAAGTGCGAG+AGG | 0.590260 | 4.3:+9425297 | MS.gene030720:CDS |
| GTCATCGAGTGATTCTAGCC+CGG | 0.591218 | 4.3:-9425966 | None:intergenic |
| CTCGGATTTCATGCCAGGGG+AGG | 0.592720 | 4.3:+9421310 | MS.gene030720:CDS |
| CTTTGGTAAATCAGTTGCAG+AGG | 0.593038 | 4.3:+9425850 | MS.gene030720:CDS |
| GCTGGTGTATTGCTGACTCT+AGG | 0.593908 | 4.3:-9425580 | None:intergenic |
| AAACATCTTCCACCAATCAA+AGG | 0.593927 | 4.3:+9419970 | MS.gene030720:CDS |
| CAATCTGACGATAGTGACGA+TGG | 0.595092 | 4.3:+9429923 | MS.gene030720:CDS |
| AATTAAGTTGAAGTACAAGA+AGG | 0.595648 | 4.3:+9428791 | MS.gene030720:CDS |
| AGATACTGAACTGTTCTATG+AGG | 0.599256 | 4.3:+9420765 | MS.gene030720:CDS |
| TACAAAATAATGAAGACGCA+TGG | 0.600991 | 4.3:+9429948 | MS.gene030720:CDS |
| CTGGTTATTATATAAAGGGG+TGG | 0.601015 | 4.3:-9420701 | None:intergenic |
| TTTCTTCGTCGAGATGCATG+GGG | 0.601698 | 4.3:-9427039 | None:intergenic |
| AAACACCTTCCACCAATCAA+AGG | 0.604763 | 4.3:+9427367 | MS.gene030720:CDS |
| CAATAACATAAGGAGGGTCG+AGG | 0.606753 | 4.3:-9426837 | None:intergenic |
| CTTTCAAGGACAAGACACCT+AGG | 0.606828 | 4.3:+9420725 | MS.gene030720:CDS |
| GCTAGAAGTCAGCCTAAACG+TGG | 0.607960 | 4.3:+9418117 | MS.gene030720:CDS |
| ATAAAGGTGGTAAAACCTCA+AGG | 0.609003 | 4.3:+9426743 | MS.gene030720:CDS |
| ATCTTTCAATGTGAATGGCG+CGG | 0.609959 | 4.3:+9426210 | MS.gene030720:CDS |
| ATGCCTCGGATTTCATGCCA+GGG | 0.613701 | 4.3:+9421306 | MS.gene030720:CDS |
| ACTGATGCCATGAATAATCG+TGG | 0.614136 | 4.3:+9428840 | MS.gene030720:CDS |
| GTGATGATGAGTTACAAAGA+TGG | 0.615643 | 4.3:+9422131 | MS.gene030720:CDS |
| GGCTGATGCTAATTATGAAG+AGG | 0.617871 | 4.3:+9428396 | MS.gene030720:CDS |
| CTCCATCAATAACATAAGGA+GGG | 0.625247 | 4.3:-9426843 | None:intergenic |
| TGCAAAAGGTCAGCCAATGT+GGG | 0.626313 | 4.3:-9426528 | None:intergenic |
| ATAAAGGTAGTAAAACCTCA+AGG | 0.627073 | 4.3:+9419338 | MS.gene030720:CDS |
| TTGGTGGAAGGTGTTTGCGA+AGG | 0.627136 | 4.3:-9427360 | None:intergenic |
| GTGGTTGAAGACCCGACACA+TGG | 0.629822 | 4.3:+9421332 | MS.gene030720:CDS |
| CAATGGGGCAGTCAGGATCA+GGG | 0.632141 | 4.3:-9426410 | None:intergenic |
| CAAAGAACTGCCTACAAATG+GGG | 0.632541 | 4.3:+9425138 | MS.gene030720:CDS |
| TTATGTTCAGGTCTTGTCTG+CGG | 0.632639 | 4.3:+9425393 | MS.gene030720:intron |
| TTACCAGTCTTTCATGGACA+AGG | 0.633575 | 4.3:+9428519 | MS.gene030720:CDS |
| TAGTTGAGATTCTTTGTGAG+TGG | 0.635988 | 4.3:-9424443 | None:intergenic |
| TTCTCCAGATAGTCCCACAT+TGG | 0.636578 | 4.3:+9426515 | MS.gene030720:CDS |
| GTATTGCTGACTCTAGGTCG+TGG | 0.639699 | 4.3:-9425574 | None:intergenic |
| GAACTGCCTACAAATGGGGA+AGG | 0.640951 | 4.3:+9425142 | MS.gene030720:CDS |
| TTCAGGAAGTCAGAATGGGA+AGG | 0.643999 | 4.3:-9425773 | None:intergenic |
| CTACTCGCTTAACCATAGGT+AGG | 0.644131 | 4.3:+9418020 | MS.gene030720:CDS |
| ATACGATGGCAAAAGTAGGT+CGG | 0.644577 | 4.3:+9426255 | MS.gene030720:CDS |
| TTTGTCCTTCCAGGATACGA+TGG | 0.645335 | 4.3:+9426241 | MS.gene030720:CDS |
| CTCCCCTGGCATGAAATCCG+AGG | 0.647352 | 4.3:-9421309 | None:intergenic |
| TCAGGGAGGACATCACTGAA+AGG | 0.647641 | 4.3:-9425430 | None:intergenic |
| CGTCTAATAATATCTCGAAG+AGG | 0.649690 | 4.3:-9419797 | None:intergenic |
| CATTCTCTACAGCATTAGCA+AGG | 0.652452 | 4.3:-9417970 | None:intergenic |
| AATATCTATATGCAGTGATG+GGG | 0.653102 | 4.3:+9428342 | MS.gene030720:intron |
| AGAACGTATGGAGCGATCGG+CGG | 0.656384 | 4.3:+9419823 | MS.gene030720:CDS |
| GAAATCCGAGGCATCTCTAG+CGG | 0.659596 | 4.3:-9421297 | None:intergenic |
| TCAGAGTCTGCAGTTCACGA+TGG | 0.663364 | 4.3:+9425806 | MS.gene030720:CDS |
| CATTCTCTACAGCATTAGCA+GGG | 0.663600 | 4.3:-9425066 | None:intergenic |
| TTTCAAGGACAAGACACCTA+GGG | 0.665399 | 4.3:+9420726 | MS.gene030720:CDS |
| AATCTGACGATAGTGACGAT+GGG | 0.666315 | 4.3:+9429924 | MS.gene030720:CDS |
| GCTTCAGGCGACATTTACAA+TGG | 0.666517 | 4.3:+9425244 | MS.gene030720:CDS |
| CATCATAGACATTGTCAATG+GGG | 0.666547 | 4.3:-9426425 | None:intergenic |
| TACTTGCAGAACATAAGGAG+CGG | 0.669846 | 4.3:+9427221 | MS.gene030720:CDS |
| TTATATGCATGCAGTGACAG+GGG | 0.675034 | 4.3:+9420595 | MS.gene030720:intron |
| AGCGGCAACATCCTTTACAG+TGG | 0.676327 | 4.3:+9421029 | MS.gene030720:CDS |
| CTAGAGATTAGCCTAAACGC+GGG | 0.676355 | 4.3:+9425211 | MS.gene030720:CDS |
| TTTCAATGTGAATGGCGCGG+AGG | 0.676830 | 4.3:+9426213 | MS.gene030720:CDS |
| TGCCTCGGATTTCATGCCAG+GGG | 0.682068 | 4.3:+9421307 | MS.gene030720:CDS |
| TTCTTCGTCGAGATGCATGG+GGG | 0.683443 | 4.3:-9427038 | None:intergenic |
| TGAAGTACAAGAAAGAAGAG+CGG | 0.690863 | 4.3:+9421011 | MS.gene030720:CDS |
| ACTAGAGATTAGCCTAAACG+CGG | 0.695442 | 4.3:+9425210 | MS.gene030720:CDS |
| AAGTTCAAAGAAGAAATCAG+TGG | 0.701783 | 4.3:+9419528 | MS.gene030720:CDS |
| AAGTTCAAAGAAGAAATCAG+TGG | 0.701783 | 4.3:+9426933 | MS.gene030720:CDS |
| TTCATGGACAAGGCACCTAG+GGG | 0.703716 | 4.3:+9428529 | MS.gene030720:CDS |
| ATTCTGCAGATAGTCCACAT+TGG | 0.705901 | 4.3:+9418200 | MS.gene030720:CDS |
| CTAGAAGTCAGCCTAAACGT+GGG | 0.712351 | 4.3:+9418118 | MS.gene030720:CDS |
| TTCCGGTTCCAGGATCAGGG+AGG | 0.714895 | 4.3:-9425444 | None:intergenic |
| GCTGGTGTGGAGGATAAAGG+TGG | 0.724198 | 4.3:+9426730 | MS.gene030720:CDS |
| AGAGAATGTATTGAATAATG+CGG | 0.729081 | 4.3:+9425081 | MS.gene030720:CDS |
| AAATGACGATGAGAACGACG+TGG | 0.754814 | 4.3:+9426879 | MS.gene030720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 9417956 | 9429994 | 9417956 | ID=MS.gene030720 |
| chr4.3 | mRNA | 9417956 | 9429994 | 9417956 | ID=MS.gene030720.t1;Parent=MS.gene030720 |
| chr4.3 | exon | 9417956 | 9418260 | 9417956 | ID=MS.gene030720.t1.exon1;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9417956 | 9418260 | 9417956 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9418491 | 9418536 | 9418491 | ID=MS.gene030720.t1.exon2;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9418491 | 9418536 | 9418491 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9419274 | 9419429 | 9419274 | ID=MS.gene030720.t1.exon3;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9419274 | 9419429 | 9419274 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9419511 | 9419664 | 9419511 | ID=MS.gene030720.t1.exon4;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9419511 | 9419664 | 9419511 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9419750 | 9419844 | 9419750 | ID=MS.gene030720.t1.exon5;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9419750 | 9419844 | 9419750 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9419948 | 9419991 | 9419948 | ID=MS.gene030720.t1.exon6;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9419948 | 9419991 | 9419948 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9420609 | 9420786 | 9420609 | ID=MS.gene030720.t1.exon7;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9420609 | 9420786 | 9420609 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9420938 | 9421082 | 9420938 | ID=MS.gene030720.t1.exon8;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9420938 | 9421082 | 9420938 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9421234 | 9421361 | 9421234 | ID=MS.gene030720.t1.exon9;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9421234 | 9421361 | 9421234 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9422040 | 9422166 | 9422040 | ID=MS.gene030720.t1.exon10;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9422040 | 9422166 | 9422040 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9424329 | 9424514 | 9424329 | ID=MS.gene030720.t1.exon11;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9424329 | 9424514 | 9424329 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9425047 | 9425318 | 9425047 | ID=MS.gene030720.t1.exon12;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9425047 | 9425318 | 9425047 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9425403 | 9425469 | 9425403 | ID=MS.gene030720.t1.exon13;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9425403 | 9425469 | 9425403 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9425548 | 9425628 | 9425548 | ID=MS.gene030720.t1.exon14;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9425548 | 9425628 | 9425548 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9425729 | 9425871 | 9425729 | ID=MS.gene030720.t1.exon15;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9425729 | 9425871 | 9425729 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9425950 | 9426016 | 9425950 | ID=MS.gene030720.t1.exon16;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9425950 | 9426016 | 9425950 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9426194 | 9426285 | 9426194 | ID=MS.gene030720.t1.exon17;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9426194 | 9426285 | 9426194 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9426393 | 9426575 | 9426393 | ID=MS.gene030720.t1.exon18;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9426393 | 9426575 | 9426393 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9426679 | 9427069 | 9426679 | ID=MS.gene030720.t1.exon19;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9426679 | 9427069 | 9426679 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9427155 | 9427249 | 9427155 | ID=MS.gene030720.t1.exon20;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9427155 | 9427249 | 9427155 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9427345 | 9427388 | 9427345 | ID=MS.gene030720.t1.exon21;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9427345 | 9427388 | 9427345 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9428357 | 9428588 | 9428357 | ID=MS.gene030720.t1.exon22;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9428357 | 9428588 | 9428357 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9428723 | 9428867 | 9428723 | ID=MS.gene030720.t1.exon23;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9428723 | 9428867 | 9428723 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9429011 | 9429135 | 9429011 | ID=MS.gene030720.t1.exon24;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9429011 | 9429135 | 9429011 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| chr4.3 | exon | 9429839 | 9429994 | 9429839 | ID=MS.gene030720.t1.exon25;Parent=MS.gene030720.t1 |
| chr4.3 | CDS | 9429839 | 9429994 | 9429839 | ID=cds.MS.gene030720.t1;Parent=MS.gene030720.t1 |
| Gene Sequence |
| Protein sequence |
