Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030746.t1 | XP_003630093.1 | 98.4 | 309 | 5 | 0 | 1 | 309 | 50 | 358 | 4.80E-167 | 597 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030746.t1 | Q39162 | 65.6 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 5.3e-106 | 385.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030746.t1 | G7LB89 | 98.4 | 309 | 5 | 0 | 1 | 309 | 50 | 358 | 3.5e-167 | 597.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene030746.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030746.t1 | MTR_8g091650 | 98.382 | 309 | 5 | 0 | 1 | 309 | 50 | 358 | 0.0 | 631 |
MS.gene030746.t1 | MTR_8g091650 | 88.116 | 345 | 5 | 1 | 1 | 309 | 50 | 394 | 0.0 | 612 |
MS.gene030746.t1 | MTR_8g091650 | 98.239 | 284 | 5 | 0 | 26 | 309 | 2 | 285 | 0.0 | 579 |
MS.gene030746.t1 | MTR_3g087940 | 71.935 | 310 | 85 | 2 | 1 | 309 | 55 | 363 | 2.31e-165 | 464 |
MS.gene030746.t1 | MTR_8g040120 | 52.234 | 291 | 125 | 4 | 26 | 307 | 181 | 466 | 2.52e-94 | 287 |
MS.gene030746.t1 | MTR_3g073560 | 50.853 | 293 | 141 | 2 | 16 | 305 | 53 | 345 | 6.11e-94 | 290 |
MS.gene030746.t1 | MTR_7g089800 | 51.546 | 291 | 127 | 4 | 26 | 307 | 138 | 423 | 7.86e-94 | 285 |
MS.gene030746.t1 | MTR_5g060950 | 51.034 | 290 | 141 | 1 | 16 | 304 | 57 | 346 | 1.25e-93 | 282 |
MS.gene030746.t1 | MTR_7g089800 | 51.546 | 291 | 127 | 4 | 26 | 307 | 167 | 452 | 1.72e-93 | 285 |
MS.gene030746.t1 | MTR_2g086420 | 50.526 | 285 | 129 | 4 | 26 | 307 | 193 | 468 | 2.68e-90 | 278 |
MS.gene030746.t1 | MTR_2g086420 | 50.526 | 285 | 129 | 4 | 26 | 307 | 194 | 469 | 2.78e-90 | 278 |
MS.gene030746.t1 | MTR_7g092750 | 45.425 | 306 | 159 | 3 | 10 | 307 | 57 | 362 | 2.08e-89 | 271 |
MS.gene030746.t1 | MTR_5g054900 | 48.797 | 291 | 137 | 3 | 25 | 307 | 67 | 353 | 2.59e-88 | 268 |
MS.gene030746.t1 | MTR_7g092750 | 45.425 | 306 | 159 | 3 | 10 | 307 | 158 | 463 | 2.71e-88 | 271 |
MS.gene030746.t1 | MTR_5g054900 | 48.621 | 290 | 135 | 3 | 25 | 307 | 67 | 349 | 1.45e-87 | 266 |
MS.gene030746.t1 | MTR_5g054900 | 48.797 | 291 | 137 | 3 | 25 | 307 | 148 | 434 | 3.10e-87 | 268 |
MS.gene030746.t1 | MTR_5g054900 | 48.621 | 290 | 135 | 3 | 25 | 307 | 178 | 460 | 3.83e-86 | 266 |
MS.gene030746.t1 | MTR_4g053250 | 47.735 | 287 | 139 | 3 | 22 | 307 | 185 | 461 | 5.67e-85 | 264 |
MS.gene030746.t1 | MTR_1g111310 | 44.828 | 290 | 151 | 4 | 25 | 307 | 420 | 707 | 9.58e-78 | 251 |
MS.gene030746.t1 | MTR_1g111310 | 44.681 | 282 | 143 | 4 | 25 | 301 | 53 | 326 | 7.92e-69 | 227 |
MS.gene030746.t1 | MTR_7g092750 | 41.503 | 306 | 145 | 4 | 10 | 307 | 158 | 437 | 4.33e-74 | 234 |
MS.gene030746.t1 | MTR_0126s0080 | 43.462 | 260 | 138 | 4 | 10 | 260 | 200 | 459 | 1.10e-63 | 208 |
MS.gene030746.t1 | MTR_3g044820 | 44.848 | 165 | 83 | 4 | 25 | 181 | 44 | 208 | 1.53e-40 | 140 |
MS.gene030746.t1 | MTR_1g090370 | 33.040 | 227 | 126 | 6 | 80 | 300 | 22 | 228 | 2.22e-30 | 114 |
MS.gene030746.t1 | MTR_8g094690 | 25.806 | 248 | 149 | 5 | 84 | 296 | 2 | 249 | 1.17e-13 | 70.1 |
MS.gene030746.t1 | MTR_1g111320 | 53.333 | 60 | 27 | 1 | 25 | 83 | 145 | 204 | 4.86e-12 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030746.t1 | AT5G10030 | 65.595 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 3.38e-144 | 410 |
MS.gene030746.t1 | AT5G10030 | 65.595 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 3.38e-144 | 410 |
MS.gene030746.t1 | AT5G10030 | 65.595 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 3.38e-144 | 410 |
MS.gene030746.t1 | AT5G10030 | 65.595 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 3.38e-144 | 410 |
MS.gene030746.t1 | AT5G10030 | 65.595 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 3.38e-144 | 410 |
MS.gene030746.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
MS.gene030746.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
MS.gene030746.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
MS.gene030746.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
MS.gene030746.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
MS.gene030746.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
MS.gene030746.t1 | AT5G65210 | 65.646 | 294 | 98 | 2 | 18 | 308 | 4 | 297 | 1.55e-139 | 396 |
MS.gene030746.t1 | AT1G22070 | 58.305 | 295 | 120 | 3 | 16 | 307 | 88 | 382 | 5.03e-118 | 345 |
MS.gene030746.t1 | AT1G77920 | 57.840 | 287 | 111 | 2 | 23 | 308 | 90 | 367 | 1.05e-117 | 343 |
MS.gene030746.t1 | AT5G06950 | 52.759 | 290 | 124 | 4 | 26 | 307 | 46 | 330 | 1.95e-93 | 280 |
MS.gene030746.t1 | AT5G06950 | 52.759 | 290 | 124 | 4 | 26 | 307 | 46 | 330 | 1.95e-93 | 280 |
MS.gene030746.t1 | AT5G06950 | 52.759 | 290 | 124 | 4 | 26 | 307 | 46 | 330 | 1.95e-93 | 280 |
MS.gene030746.t1 | AT5G06950 | 52.759 | 290 | 124 | 4 | 26 | 307 | 46 | 330 | 1.95e-93 | 280 |
MS.gene030746.t1 | AT5G06950 | 52.759 | 290 | 124 | 4 | 26 | 307 | 46 | 330 | 1.95e-93 | 280 |
MS.gene030746.t1 | AT1G08320 | 50.704 | 284 | 130 | 4 | 26 | 307 | 54 | 329 | 2.13e-93 | 281 |
MS.gene030746.t1 | AT1G08320 | 50.704 | 284 | 130 | 4 | 26 | 307 | 54 | 329 | 2.13e-93 | 281 |
MS.gene030746.t1 | AT1G08320 | 50.704 | 284 | 130 | 4 | 26 | 307 | 178 | 453 | 1.04e-91 | 281 |
MS.gene030746.t1 | AT1G08320 | 50.704 | 284 | 130 | 4 | 26 | 307 | 178 | 453 | 1.04e-91 | 281 |
MS.gene030746.t1 | AT1G08320 | 50.704 | 284 | 130 | 4 | 26 | 307 | 178 | 453 | 1.04e-91 | 281 |
MS.gene030746.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 14 | 303 | 1.53e-91 | 275 |
MS.gene030746.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 41 | 330 | 3.02e-91 | 275 |
MS.gene030746.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 41 | 330 | 3.02e-91 | 275 |
MS.gene030746.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 41 | 330 | 3.02e-91 | 275 |
MS.gene030746.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 41 | 330 | 3.02e-91 | 275 |
MS.gene030746.t1 | AT3G12250 | 48.589 | 319 | 143 | 5 | 5 | 307 | 42 | 355 | 6.33e-91 | 275 |
MS.gene030746.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 35 | 324 | 6.64e-91 | 274 |
MS.gene030746.t1 | AT5G06960 | 50.865 | 289 | 131 | 3 | 26 | 307 | 26 | 310 | 4.45e-90 | 271 |
MS.gene030746.t1 | AT5G06960 | 50.865 | 289 | 131 | 3 | 26 | 307 | 46 | 330 | 5.81e-90 | 271 |
MS.gene030746.t1 | AT5G06960 | 50.865 | 289 | 131 | 3 | 26 | 307 | 46 | 330 | 5.81e-90 | 271 |
MS.gene030746.t1 | AT5G06839 | 45.779 | 308 | 151 | 4 | 16 | 307 | 108 | 415 | 1.19e-85 | 263 |
MS.gene030746.t1 | AT5G06839 | 45.779 | 308 | 151 | 4 | 16 | 307 | 151 | 458 | 1.76e-85 | 264 |
MS.gene030746.t1 | AT5G06839 | 45.631 | 309 | 151 | 5 | 16 | 307 | 108 | 416 | 8.54e-84 | 259 |
MS.gene030746.t1 | AT1G68640 | 43.182 | 308 | 166 | 3 | 7 | 307 | 147 | 452 | 3.65e-75 | 238 |
MS.gene030746.t1 | AT1G58330 | 26.906 | 223 | 146 | 6 | 90 | 297 | 3 | 223 | 1.38e-14 | 72.0 |
Find 61 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATATCAGTGATATACAAAT+TGG | 0.178312 | 4.3:-9769512 | MS.gene030746:CDS |
GGATTGGATTCTAATAATTT+AGG | 0.214016 | 4.3:-9770496 | MS.gene030746:CDS |
TAAGAGTCGTTTGAAGAAAA+AGG | 0.214551 | 4.3:-9770791 | MS.gene030746:intron |
TCTGTCAATGGTTCAATTAA+AGG | 0.231131 | 4.3:+9769219 | None:intergenic |
TGCTCGATGGCTGCTTGCTT+TGG | 0.257053 | 4.3:-9768697 | MS.gene030746:CDS |
TAGTAACTGTGTTAGCTTCT+TGG | 0.278886 | 4.3:+9771403 | None:intergenic |
ATTCCAACATTTGTCTGTTT+AGG | 0.286691 | 4.3:+9769555 | None:intergenic |
TAGTCAGAGGATGCTTCTTT+TGG | 0.297753 | 4.3:-9771456 | MS.gene030746:CDS |
CAAATTGGGGAACTTGTAAA+TGG | 0.313309 | 4.3:-9769497 | MS.gene030746:CDS |
TTTGCTGGCTCTGTAAATTC+AGG | 0.350309 | 4.3:-9770472 | MS.gene030746:intron |
GCATGACTTCTCAAGATTAT+AGG | 0.355362 | 4.3:+9769179 | None:intergenic |
AAATTGCAGGGATTGTATAT+TGG | 0.363352 | 4.3:-9770523 | MS.gene030746:intron |
AGCTAACACAGTTACTAATA+AGG | 0.363384 | 4.3:-9771397 | MS.gene030746:intron |
GTGTCGTTTAAAGCTGTTAC+AGG | 0.364560 | 4.3:-9770670 | MS.gene030746:CDS |
GCTCGATGGCTGCTTGCTTT+GGG | 0.374474 | 4.3:-9768696 | MS.gene030746:CDS |
ATTGTATATTGGTGGTGGAT+TGG | 0.406379 | 4.3:-9770512 | MS.gene030746:CDS |
AATAGAGAGGCTGGAAGCTC+TGG | 0.410741 | 4.3:-9769040 | MS.gene030746:CDS |
AGGTGTTACCTTTAGAAGTT+CGG | 0.411150 | 4.3:+9769340 | None:intergenic |
ATATCAGTGATATACAAATT+GGG | 0.413722 | 4.3:-9769511 | MS.gene030746:CDS |
CTGTCAATGGTTCAATTAAA+GGG | 0.420015 | 4.3:+9769220 | None:intergenic |
TCGACCCTCCGAACTTCTAA+AGG | 0.428847 | 4.3:-9769348 | MS.gene030746:intron |
AACCGTTGTTCCTCTGTCAA+TGG | 0.441867 | 4.3:+9769207 | None:intergenic |
TAAGGGATTTGAGCAAACTT+TGG | 0.444298 | 4.3:-9768656 | MS.gene030746:CDS |
GTGAATACTTTCAACGCCTA+AGG | 0.464354 | 4.3:-9768674 | MS.gene030746:CDS |
AGATGCCCTTTCACAAGGTA+TGG | 0.480625 | 4.3:-9769145 | MS.gene030746:CDS |
AGAGCTAGATCATACAAAAC+AGG | 0.481991 | 4.3:-9770640 | MS.gene030746:intron |
GGATATTGCAATAGAGAGGC+TGG | 0.484290 | 4.3:-9769049 | MS.gene030746:CDS |
AAAGGGCATCTTCTGCTTGT+CGG | 0.484492 | 4.3:+9769157 | None:intergenic |
TAACTGTGTTAGCTTCTTGG+TGG | 0.484546 | 4.3:+9771406 | None:intergenic |
TCTGGCTAGCTTTGTGAACC+AGG | 0.487895 | 4.3:-9769022 | MS.gene030746:intron |
CAGGGATTGTATATTGGTGG+TGG | 0.489623 | 4.3:-9770517 | MS.gene030746:CDS |
CTTGTTGACACAGTTGCAGC+AGG | 0.514923 | 4.3:-9769105 | MS.gene030746:CDS |
AAAGTTTGCTCAAATCCCTT+AGG | 0.521782 | 4.3:+9768658 | None:intergenic |
AGACCTAAACAGACAAATGT+TGG | 0.522384 | 4.3:-9769558 | MS.gene030746:CDS |
TGCAGGTTCACGAGGACGAT+TGG | 0.528063 | 4.3:+9768632 | None:intergenic |
TGAATACTTTCAACGCCTAA+GGG | 0.549102 | 4.3:-9768673 | MS.gene030746:CDS |
ATGTGGAAAACAACAGCTGA+AGG | 0.550259 | 4.3:-9769395 | MS.gene030746:CDS |
AGACAAATGTTGGAATTGAA+AGG | 0.555362 | 4.3:-9769548 | MS.gene030746:CDS |
ACAGGCTGATCATCTTCGAC+AGG | 0.558370 | 4.3:-9768763 | MS.gene030746:intron |
GCAGCAGGACAACTCGTTGA+AGG | 0.566836 | 4.3:-9769090 | MS.gene030746:CDS |
CTCTTGCATGAAGACTATGC+AGG | 0.569640 | 4.3:+9768615 | None:intergenic |
AGGAACTTACATTCCACAGA+TGG | 0.575188 | 4.3:-9769070 | MS.gene030746:CDS |
CCGTACGTCAAACTGCTCGA+TGG | 0.578154 | 4.3:-9768710 | MS.gene030746:CDS |
TATCAGTGATATACAAATTG+GGG | 0.581840 | 4.3:-9769510 | MS.gene030746:CDS |
TTGCAGGGATTGTATATTGG+TGG | 0.592067 | 4.3:-9770520 | MS.gene030746:intron |
TAAGATGGAGTATGAACACT+GGG | 0.600728 | 4.3:-9769585 | MS.gene030746:CDS |
TGTTACCTTTAGAAGTTCGG+AGG | 0.601165 | 4.3:+9769343 | None:intergenic |
TTAAGATGGAGTATGAACAC+TGG | 0.603260 | 4.3:-9769586 | MS.gene030746:CDS |
AACCATTGACAGAGGAACAA+CGG | 0.614266 | 4.3:-9769209 | MS.gene030746:CDS |
GCAGAAGATGCCCTTTCACA+AGG | 0.620831 | 4.3:-9769150 | MS.gene030746:CDS |
TTTAATTGAACCATTGACAG+AGG | 0.625048 | 4.3:-9769217 | MS.gene030746:CDS |
TCTATGTTATCACTGGCATG+TGG | 0.630097 | 4.3:-9769412 | MS.gene030746:CDS |
CCATCGAGCAGTTTGACGTA+CGG | 0.630335 | 4.3:+9768710 | None:intergenic |
TCTATTGCAATATCCATCTG+TGG | 0.636700 | 4.3:+9769057 | None:intergenic |
GTTACCTTTAGAAGTTCGGA+GGG | 0.640489 | 4.3:+9769344 | None:intergenic |
GAAGACTATGCAGGTTCACG+AGG | 0.645466 | 4.3:+9768624 | None:intergenic |
AGATGGATATTGCAATAGAG+AGG | 0.647680 | 4.3:-9769053 | MS.gene030746:CDS |
TGTGGAAAACAACAGCTGAA+GGG | 0.647786 | 4.3:-9769394 | MS.gene030746:CDS |
GTTTGAAATAGTGATTCATG+AGG | 0.660995 | 4.3:+9769474 | None:intergenic |
ACGTCTCGCACAAAATCGAG+AGG | 0.680873 | 4.3:-9770821 | MS.gene030746:CDS |
GATGGAGTATGAACACTGGG+TGG | 0.682481 | 4.3:-9769582 | MS.gene030746:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGTAACAAAATTTATTAGA+GGG | - | chr4.3:9770146-9770165 | MS.gene030746:intron | 15.0% |
!! | TAAGTAACAAAATTTATTAG+AGG | - | chr4.3:9770145-9770164 | MS.gene030746:intron | 15.0% |
!! | TTGACAATAATAAACTTAAT+TGG | + | chr4.3:9771299-9771318 | None:intergenic | 15.0% |
!!! | TAAGTTTTTATAAAGCAAAA+AGG | + | chr4.3:9769857-9769876 | None:intergenic | 15.0% |
!!! | TGATATATAATATTAGCTTT+GGG | - | chr4.3:9770379-9770398 | MS.gene030746:intron | 15.0% |
!!! | TTGATATATAATATTAGCTT+TGG | - | chr4.3:9770378-9770397 | MS.gene030746:intron | 15.0% |
!! | AATATATAACATACATTACC+TGG | + | chr4.3:9771081-9771100 | None:intergenic | 20.0% |
!! | ACAAAAGCAACATTAATTAA+AGG | + | chr4.3:9770008-9770027 | None:intergenic | 20.0% |
!! | ATATCAGTGATATACAAATT+GGG | - | chr4.3:9770571-9770590 | MS.gene030746:intron | 20.0% |
!! | CAAATTAAAAAGGTTAAACT+AGG | - | chr4.3:9771257-9771276 | MS.gene030746:intron | 20.0% |
!! | CACAAATTACCAAATTAAAA+AGG | - | chr4.3:9771247-9771266 | MS.gene030746:intron | 20.0% |
!! | CCTTTAACAAAATTTCAAAA+TGG | + | chr4.3:9769013-9769032 | None:intergenic | 20.0% |
!! | TAAGTTTATTATTGTCAAAC+AGG | - | chr4.3:9771301-9771320 | MS.gene030746:intron | 20.0% |
!!! | AAACTTTGAGAAAATTCTTT+AGG | - | chr4.3:9769795-9769814 | MS.gene030746:intron | 20.0% |
!!! | AGAAATAACAACTTTTAAGA+TGG | - | chr4.3:9770482-9770501 | MS.gene030746:CDS | 20.0% |
!!! | AGTTGTTATTTCTGTAAATT+AGG | + | chr4.3:9770475-9770494 | None:intergenic | 20.0% |
!!! | CCATTTTGAAATTTTGTTAA+AGG | - | chr4.3:9769010-9769029 | MS.gene030746:intron | 20.0% |
!!! | CTAGTTTAACCTTTTTAATT+TGG | + | chr4.3:9771259-9771278 | None:intergenic | 20.0% |
!!! | GAAATTTTGGAAGAAATTAT+TGG | + | chr4.3:9770228-9770247 | None:intergenic | 20.0% |
! | AACATTAATTAAAGGAAAGG+AGG | + | chr4.3:9770000-9770019 | None:intergenic | 25.0% |
! | ACATTAATTAAAGGAAAGGA+GGG | + | chr4.3:9769999-9770018 | None:intergenic | 25.0% |
! | AGCAACATTAATTAAAGGAA+AGG | + | chr4.3:9770003-9770022 | None:intergenic | 25.0% |
! | CAAAAAAGTGATTTCATCAT+AGG | + | chr4.3:9769700-9769719 | None:intergenic | 25.0% |
! | CATATCAGTGATATACAAAT+TGG | - | chr4.3:9770570-9770589 | MS.gene030746:intron | 25.0% |
! | CGTATAATTTAGATTAGATG+AGG | - | chr4.3:9771105-9771124 | MS.gene030746:intron | 25.0% |
! | GATATTGAACAATATGAAGT+AGG | + | chr4.3:9769496-9769515 | None:intergenic | 25.0% |
! | GGATTGGATTCTAATAATTT+AGG | - | chr4.3:9769586-9769605 | MS.gene030746:CDS | 25.0% |
! | TATCAGTGATATACAAATTG+GGG | - | chr4.3:9770572-9770591 | MS.gene030746:intron | 25.0% |
!! | CTTACTGCAGATATATATTT+TGG | - | chr4.3:9769873-9769892 | MS.gene030746:intron | 25.0% |
!! | TCAATCACATTAATCCATTT+TGG | - | chr4.3:9768934-9768953 | MS.gene030746:intron | 25.0% |
!! | TTTGGTAATTTGTGTGTTAA+TGG | + | chr4.3:9771241-9771260 | None:intergenic | 25.0% |
!!! | GTTGGTTTGTTATTAAATTC+TGG | - | chr4.3:9769632-9769651 | MS.gene030746:intron | 25.0% |
!!! | TCTAATAATTTAGGTTTTGC+TGG | - | chr4.3:9769595-9769614 | MS.gene030746:CDS | 25.0% |
!!! | TCTATTCTCAAACTAGTTTT+TGG | - | chr4.3:9770437-9770456 | MS.gene030746:intron | 25.0% |
!!! | TGCGTTTTTTTATGCTTATA+AGG | - | chr4.3:9769215-9769234 | MS.gene030746:CDS | 25.0% |
!!! | TGTATGGACTATTTTTTACA+CGG | - | chr4.3:9768855-9768874 | MS.gene030746:intron | 25.0% |
AAATTGCAGGGATTGTATAT+TGG | - | chr4.3:9769559-9769578 | MS.gene030746:CDS | 30.0% | |
AACCTACAAAATCAACTACA+AGG | - | chr4.3:9769764-9769783 | MS.gene030746:intron | 30.0% | |
ACCTACAAAATCAACTACAA+GGG | - | chr4.3:9769765-9769784 | MS.gene030746:intron | 30.0% | |
AGACAAATGTTGGAATTGAA+AGG | - | chr4.3:9770534-9770553 | MS.gene030746:intron | 30.0% | |
AGCTAACACAGTTACTAATA+AGG | - | chr4.3:9768685-9768704 | MS.gene030746:CDS | 30.0% | |
ATCGATATACTTGATCAACA+TGG | - | chr4.3:9770766-9770785 | MS.gene030746:intron | 30.0% | |
ATTCCAACATTTGTCTGTTT+AGG | + | chr4.3:9770530-9770549 | None:intergenic | 30.0% | |
ATTGCTCAATCAGTATTTCA+TGG | - | chr4.3:9769039-9769058 | MS.gene030746:CDS | 30.0% | |
CTAAGTTTCTACAAAGTTTG+AGG | + | chr4.3:9769100-9769119 | None:intergenic | 30.0% | |
CTGTCAATGGTTCAATTAAA+GGG | + | chr4.3:9770865-9770884 | None:intergenic | 30.0% | |
GAATAGAGTTCAATACAAGA+AGG | + | chr4.3:9770424-9770443 | None:intergenic | 30.0% | |
GAATCAAATGCTTGTTTGTT+TGG | + | chr4.3:9769352-9769371 | None:intergenic | 30.0% | |
TAAGAGTCGTTTGAAGAAAA+AGG | - | chr4.3:9769291-9769310 | MS.gene030746:intron | 30.0% | |
TCCATACATGTTTGATATGA+CGG | + | chr4.3:9768843-9768862 | None:intergenic | 30.0% | |
TCGATATACTTGATCAACAT+GGG | - | chr4.3:9770767-9770786 | MS.gene030746:intron | 30.0% | |
TCTGTCAATGGTTCAATTAA+AGG | + | chr4.3:9770866-9770885 | None:intergenic | 30.0% | |
TGGATTCAGAGTTTCAAAAT+TGG | + | chr4.3:9770208-9770227 | None:intergenic | 30.0% | |
TTAATGCAGAGAGAAATGTT+TGG | - | chr4.3:9770112-9770131 | MS.gene030746:intron | 30.0% | |
TTGAACTTAACATTGCACAT+GGG | + | chr4.3:9768884-9768903 | None:intergenic | 30.0% | |
TTTAATTGAACCATTGACAG+AGG | - | chr4.3:9770865-9770884 | MS.gene030746:intron | 30.0% | |
! | AGAGAGAAATGTTTGGAATA+AGG | - | chr4.3:9770119-9770138 | MS.gene030746:intron | 30.0% |
! | GATGTTTTCTATGTTATCAC+TGG | - | chr4.3:9770663-9770682 | MS.gene030746:CDS | 30.0% |
! | GTTGATCAAGTATATCGATT+AGG | + | chr4.3:9770765-9770784 | None:intergenic | 30.0% |
! | GTTTGAAATAGTGATTCATG+AGG | + | chr4.3:9770611-9770630 | None:intergenic | 30.0% |
! | TGGGTTGAACAAAATTAATG+TGG | + | chr4.3:9768820-9768839 | None:intergenic | 30.0% |
! | TTCCAAAATTTCAAGTAAGC+TGG | - | chr4.3:9770236-9770255 | MS.gene030746:intron | 30.0% |
! | TTTTTCCATACCTTGTGAAA+GGG | + | chr4.3:9770945-9770964 | None:intergenic | 30.0% |
!! | ACTGCAGATATATATTTTGG+TGG | - | chr4.3:9769876-9769895 | MS.gene030746:intron | 30.0% |
!! | AGTTTTATCAGAAGTATGCA+TGG | - | chr4.3:9771203-9771222 | MS.gene030746:intron | 30.0% |
!!! | AGCATTTTAGAACCACATTT+TGG | - | chr4.3:9769133-9769152 | MS.gene030746:CDS | 30.0% |
!!! | GATGCTTCTTTTGGAATATT+GGG | - | chr4.3:9768635-9768654 | MS.gene030746:CDS | 30.0% |
!!! | GTATGGACTATTTTTTACAC+GGG | - | chr4.3:9768856-9768875 | MS.gene030746:intron | 30.0% |
!!! | TATGGACTATTTTTTACACG+GGG | - | chr4.3:9768857-9768876 | MS.gene030746:intron | 30.0% |
AAAAGGACATGCATGCAAAA+AGG | + | chr4.3:9769840-9769859 | None:intergenic | 35.0% | |
AAAAGTCGACCAATCTGAAA+GGG | - | chr4.3:9768957-9768976 | MS.gene030746:intron | 35.0% | |
ACAAGGTATGGAAAAACTAC+AGG | - | chr4.3:9770949-9770968 | MS.gene030746:intron | 35.0% | |
ACATCCAAAATTTGGAAGCA+GGG | + | chr4.3:9769189-9769208 | None:intergenic | 35.0% | |
ACCGTCATATCAAACATGTA+TGG | - | chr4.3:9768839-9768858 | MS.gene030746:intron | 35.0% | |
AGACCTAAACAGACAAATGT+TGG | - | chr4.3:9770524-9770543 | MS.gene030746:intron | 35.0% | |
AGAGCTAGATCATACAAAAC+AGG | - | chr4.3:9769442-9769461 | MS.gene030746:CDS | 35.0% | |
AGATGGATATTGCAATAGAG+AGG | - | chr4.3:9771029-9771048 | MS.gene030746:intron | 35.0% | |
AGTGAGGTCATTGCTAAAAT+AGG | + | chr4.3:9769961-9769980 | None:intergenic | 35.0% | |
ATACATGTTTGATATGACGG+TGG | + | chr4.3:9768840-9768859 | None:intergenic | 35.0% | |
ATGTTTGTGATGAGATTTGC+AGG | - | chr4.3:9770832-9770851 | MS.gene030746:CDS | 35.0% | |
CAAATTGGGGAACTTGTAAA+TGG | - | chr4.3:9770585-9770604 | MS.gene030746:intron | 35.0% | |
CAAGAAGGAAAACATACTCA+AGG | + | chr4.3:9770409-9770428 | None:intergenic | 35.0% | |
CAAGGTATGGAAAAACTACA+GGG | - | chr4.3:9770950-9770969 | MS.gene030746:intron | 35.0% | |
CACAAACATACATTATGCCA+TGG | + | chr4.3:9770821-9770840 | None:intergenic | 35.0% | |
CATCAAGAGATTGACAAATG+AGG | + | chr4.3:9769534-9769553 | None:intergenic | 35.0% | |
CGATATACTTGATCAACATG+GGG | - | chr4.3:9770768-9770787 | MS.gene030746:intron | 35.0% | |
CTTGATGCAACAAAATTGCA+GGG | - | chr4.3:9769547-9769566 | MS.gene030746:CDS | 35.0% | |
GCATGACTTCTCAAGATTAT+AGG | + | chr4.3:9770906-9770925 | None:intergenic | 35.0% | |
GTCGTTTGAAGAAAAAGGTT+TGG | - | chr4.3:9769296-9769315 | MS.gene030746:intron | 35.0% | |
GTTGAACTTAACATTGCACA+TGG | + | chr4.3:9768885-9768904 | None:intergenic | 35.0% | |
TAAAACTTATACTCCTGCCA+TGG | + | chr4.3:9771190-9771209 | None:intergenic | 35.0% | |
TAAGATGGAGTATGAACACT+GGG | - | chr4.3:9770497-9770516 | MS.gene030746:CDS | 35.0% | |
TAAGGGATTTGAGCAAACTT+TGG | - | chr4.3:9771426-9771445 | MS.gene030746:CDS | 35.0% | |
TACATGTTTGATATGACGGT+GGG | + | chr4.3:9768839-9768858 | None:intergenic | 35.0% | |
TCACACCAAAAAATTTCCAC+AGG | + | chr4.3:9770179-9770198 | None:intergenic | 35.0% | |
TCTATTGCAATATCCATCTG+TGG | + | chr4.3:9771028-9771047 | None:intergenic | 35.0% | |
TCTTGATGCAACAAAATTGC+AGG | - | chr4.3:9769546-9769565 | MS.gene030746:CDS | 35.0% | |
TGAATACTTTCAACGCCTAA+GGG | - | chr4.3:9771409-9771428 | MS.gene030746:CDS | 35.0% | |
TGTCACTGCTCTTATAAATG+TGG | - | chr4.3:9769670-9769689 | MS.gene030746:intron | 35.0% | |
TTAAGATGGAGTATGAACAC+TGG | - | chr4.3:9770496-9770515 | MS.gene030746:CDS | 35.0% | |
TTAGACACTACATTCTGTTC+TGG | - | chr4.3:9770355-9770374 | MS.gene030746:intron | 35.0% | |
TTAGATGAGGTTATGAGTAG+TGG | - | chr4.3:9771118-9771137 | MS.gene030746:intron | 35.0% | |
TTGAGGCATAAGGAAAGAAT+GGG | + | chr4.3:9769083-9769102 | None:intergenic | 35.0% | |
! | AAAGTTTGCTCAAATCCCTT+AGG | + | chr4.3:9771427-9771446 | None:intergenic | 35.0% |
! | AGCCAGCTTACTTGAAATTT+TGG | + | chr4.3:9770241-9770260 | None:intergenic | 35.0% |
! | AGGTGTTACCTTTAGAAGTT+CGG | + | chr4.3:9770745-9770764 | None:intergenic | 35.0% |
! | GTTTTTCCATACCTTGTGAA+AGG | + | chr4.3:9770946-9770965 | None:intergenic | 35.0% |
! | TAGTAACTGTGTTAGCTTCT+TGG | + | chr4.3:9768682-9768701 | None:intergenic | 35.0% |
! | TCTACAAAGTTTGAGGCATA+AGG | + | chr4.3:9769093-9769112 | None:intergenic | 35.0% |
! | TTGTCGCTTCAACATAATCA+AGG | - | chr4.3:9768792-9768811 | MS.gene030746:intron | 35.0% |
! | TTTGAGGCATAAGGAAAGAA+TGG | + | chr4.3:9769084-9769103 | None:intergenic | 35.0% |
!! | ATTGGTCGACTTTTCCAAAA+TGG | + | chr4.3:9768951-9768970 | None:intergenic | 35.0% |
!! | ATTGTATATTGGTGGTGGAT+TGG | - | chr4.3:9769570-9769589 | MS.gene030746:CDS | 35.0% |
!! | TCCCTTGTAGTTGATTTTGT+AGG | + | chr4.3:9769769-9769788 | None:intergenic | 35.0% |
!!! | CTACTCCTGTGGAAATTTTT+TGG | - | chr4.3:9770171-9770190 | MS.gene030746:intron | 35.0% |
!!! | GCAGATATATATTTTGGTGG+TGG | - | chr4.3:9769879-9769898 | MS.gene030746:intron | 35.0% |
!!! | GGATGCTTCTTTTGGAATAT+TGG | - | chr4.3:9768634-9768653 | MS.gene030746:CDS | 35.0% |
AACCATTGACAGAGGAACAA+CGG | - | chr4.3:9770873-9770892 | MS.gene030746:intron | 40.0% | |
AATAGGATTTGAGTAGCTGC+TGG | + | chr4.3:9769944-9769963 | None:intergenic | 40.0% | |
AGGAACTTACATTCCACAGA+TGG | - | chr4.3:9771012-9771031 | MS.gene030746:intron | 40.0% | |
ATGTGGAAAACAACAGCTGA+AGG | - | chr4.3:9770687-9770706 | MS.gene030746:CDS | 40.0% | |
CAAGCCAGACATCCAAAATT+TGG | + | chr4.3:9769197-9769216 | None:intergenic | 40.0% | |
CATCCAAAATTTGGAAGCAG+GGG | + | chr4.3:9769188-9769207 | None:intergenic | 40.0% | |
GAAAAGTCGACCAATCTGAA+AGG | - | chr4.3:9768956-9768975 | MS.gene030746:intron | 40.0% | |
GACACAACAGTTATGAGTAG+TGG | - | chr4.3:9771150-9771169 | MS.gene030746:intron | 40.0% | |
GACATCCAAAATTTGGAAGC+AGG | + | chr4.3:9769190-9769209 | None:intergenic | 40.0% | |
GAGTATCTGAATGTACAGTG+AGG | + | chr4.3:9769977-9769996 | None:intergenic | 40.0% | |
GATTCCTGACGTTTCATAAC+AGG | - | chr4.3:9769367-9769386 | MS.gene030746:CDS | 40.0% | |
GTGAATACTTTCAACGCCTA+AGG | - | chr4.3:9771408-9771427 | MS.gene030746:CDS | 40.0% | |
TATGTTGAAGCGACAAAGTG+CGG | + | chr4.3:9768788-9768807 | None:intergenic | 40.0% | |
TCTATGTTATCACTGGCATG+TGG | - | chr4.3:9770670-9770689 | MS.gene030746:CDS | 40.0% | |
TGCAAAGTGAGTCCAAAATG+TGG | + | chr4.3:9769148-9769167 | None:intergenic | 40.0% | |
TGGAAAACAATGCTGATCCA+TGG | - | chr4.3:9771170-9771189 | MS.gene030746:intron | 40.0% | |
TGTGGAAAACAACAGCTGAA+GGG | - | chr4.3:9770688-9770707 | MS.gene030746:CDS | 40.0% | |
TTGCAGGGATTGTATATTGG+TGG | - | chr4.3:9769562-9769581 | MS.gene030746:CDS | 40.0% | |
! | CTGCTGTCATATTTCTACCA+TGG | - | chr4.3:9770801-9770820 | MS.gene030746:CDS | 40.0% |
! | GAAGGGTTTTTCTTGTGGAT+TGG | - | chr4.3:9770705-9770724 | MS.gene030746:intron | 40.0% |
! | GCTTCCAAATTTTGGATGTC+TGG | - | chr4.3:9769190-9769209 | MS.gene030746:CDS | 40.0% |
! | GTTACCTTTAGAAGTTCGGA+GGG | + | chr4.3:9770741-9770760 | None:intergenic | 40.0% |
! | TAACTGTGTTAGCTTCTTGG+TGG | + | chr4.3:9768679-9768698 | None:intergenic | 40.0% |
! | TGTTACCTTTAGAAGTTCGG+AGG | + | chr4.3:9770742-9770761 | None:intergenic | 40.0% |
! | TTGCTACTTGCTTGATATCG+CGG | - | chr4.3:9768718-9768737 | MS.gene030746:CDS | 40.0% |
!! | GTGTCGTTTAAAGCTGTTAC+AGG | - | chr4.3:9769412-9769431 | MS.gene030746:CDS | 40.0% |
!! | TTTGCTGGCTCTGTAAATTC+AGG | - | chr4.3:9769610-9769629 | MS.gene030746:intron | 40.0% |
AAACAATGCTGATCCATGGC+AGG | - | chr4.3:9771174-9771193 | MS.gene030746:intron | 45.0% | |
AACCGTTGTTCCTCTGTCAA+TGG | + | chr4.3:9770878-9770897 | None:intergenic | 45.0% | |
ACTTTGCACTGCAGATTAGG+AGG | - | chr4.3:9769160-9769179 | MS.gene030746:CDS | 45.0% | |
AGATGCCCTTTCACAAGGTA+TGG | - | chr4.3:9770937-9770956 | MS.gene030746:intron | 45.0% | |
AGGCCAATAAGCCCTAGTTT+AGG | + | chr4.3:9769906-9769925 | None:intergenic | 45.0% | |
CAGGGATTGTATATTGGTGG+TGG | - | chr4.3:9769565-9769584 | MS.gene030746:CDS | 45.0% | |
CTCACTTTGCACTGCAGATT+AGG | - | chr4.3:9769157-9769176 | MS.gene030746:CDS | 45.0% | |
CTTTGCACTGCAGATTAGGA+GGG | - | chr4.3:9769161-9769180 | MS.gene030746:CDS | 45.0% | |
GCTGGCTATTATGTACCTAG+TGG | - | chr4.3:9770254-9770273 | MS.gene030746:intron | 45.0% | |
GGACCTAAACTAGGGCTTAT+TGG | - | chr4.3:9769900-9769919 | MS.gene030746:intron | 45.0% | |
GGATATTGCAATAGAGAGGC+TGG | - | chr4.3:9771033-9771052 | MS.gene030746:intron | 45.0% | |
GTGATGAGATTTGCAGGTTC+TGG | - | chr4.3:9770838-9770857 | MS.gene030746:intron | 45.0% | |
TGAGCCTGTTATGAAACGTC+AGG | + | chr4.3:9769374-9769393 | None:intergenic | 45.0% | |
! | CAGCTGAAGGGTTTTTCTTG+TGG | - | chr4.3:9770700-9770719 | MS.gene030746:intron | 45.0% |
!! | AAAGGGCATCTTCTGCTTGT+CGG | + | chr4.3:9770928-9770947 | None:intergenic | 45.0% |
!! | ATTAGAGGGTACTACTCCTG+TGG | - | chr4.3:9770160-9770179 | MS.gene030746:intron | 45.0% |
!! | CTGGCTCTGTAAATTCAGGT+TGG | - | chr4.3:9769614-9769633 | MS.gene030746:intron | 45.0% |
!! | TTGGTGGTGGACCTAAACTA+GGG | - | chr4.3:9769892-9769911 | MS.gene030746:intron | 45.0% |
!! | TTTGGTGGTGGACCTAAACT+AGG | - | chr4.3:9769891-9769910 | MS.gene030746:intron | 45.0% |
!!! | GGGTTTTTCTTGTGGATTGG+AGG | - | chr4.3:9770708-9770727 | MS.gene030746:intron | 45.0% |
AATAGAGAGGCTGGAAGCTC+TGG | - | chr4.3:9771042-9771061 | MS.gene030746:intron | 50.0% | |
ACAGGCTGATCATCTTCGAC+AGG | - | chr4.3:9771319-9771338 | MS.gene030746:intron | 50.0% | |
ACGTCTCGCACAAAATCGAG+AGG | - | chr4.3:9769261-9769280 | MS.gene030746:intron | 50.0% | |
CCATCGAGCAGTTTGACGTA+CGG | + | chr4.3:9771375-9771394 | None:intergenic | 50.0% | |
CTTGTTGACACAGTTGCAGC+AGG | - | chr4.3:9770977-9770996 | MS.gene030746:intron | 50.0% | |
GATGGAGTATGAACACTGGG+TGG | - | chr4.3:9770500-9770519 | MS.gene030746:CDS | 50.0% | |
GATTTGAGTAGCTGCTGGTC+TGG | + | chr4.3:9769939-9769958 | None:intergenic | 50.0% | |
GCAGAAGATGCCCTTTCACA+AGG | - | chr4.3:9770932-9770951 | MS.gene030746:intron | 50.0% | |
TCGACCCTCCGAACTTCTAA+AGG | - | chr4.3:9770734-9770753 | MS.gene030746:intron | 50.0% | |
TCGCATCAGCCCTTTCAGAT+TGG | + | chr4.3:9768969-9768988 | None:intergenic | 50.0% | |
TTGTACACAGTGCTGCCACT+AGG | + | chr4.3:9770272-9770291 | None:intergenic | 50.0% | |
! | GGCTTATTGGCCTCACCATT+GGG | - | chr4.3:9769913-9769932 | MS.gene030746:intron | 50.0% |
! | GGTCCCCTGCTTCCAAATTT+TGG | - | chr4.3:9769182-9769201 | MS.gene030746:CDS | 50.0% |
!! | TCTGGCTAGCTTTGTGAACC+AGG | - | chr4.3:9771060-9771079 | MS.gene030746:intron | 50.0% |
CCGTACGTCAAACTGCTCGA+TGG | - | chr4.3:9771372-9771391 | MS.gene030746:intron | 55.0% | |
GCAGCAGGACAACTCGTTGA+AGG | - | chr4.3:9770992-9771011 | MS.gene030746:intron | 55.0% | |
GCTCGATGGCTGCTTGCTTT+GGG | - | chr4.3:9771386-9771405 | MS.gene030746:intron | 55.0% | |
TGCAGGTTCACGAGGACGAT+TGG | + | chr4.3:9771453-9771472 | None:intergenic | 55.0% | |
TGCTCGATGGCTGCTTGCTT+TGG | - | chr4.3:9771385-9771404 | MS.gene030746:intron | 55.0% | |
! | GGGCTTATTGGCCTCACCAT+TGG | - | chr4.3:9769912-9769931 | MS.gene030746:intron | 55.0% |
! | TAGCTGCTGGTCTGGCCCAA+TGG | + | chr4.3:9769931-9769950 | None:intergenic | 60.0% |
! | GCTGGTCTGGCCCAATGGTG+AGG | + | chr4.3:9769926-9769945 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 9768629 | 9771475 | 9768629 | ID=MS.gene030746 |
chr4.3 | mRNA | 9768629 | 9771475 | 9768629 | ID=MS.gene030746.t1;Parent=MS.gene030746 |
chr4.3 | exon | 9771398 | 9771475 | 9771398 | ID=MS.gene030746.t1.exon1;Parent=MS.gene030746.t1 |
chr4.3 | CDS | 9771398 | 9771475 | 9771398 | ID=cds.MS.gene030746.t1;Parent=MS.gene030746.t1 |
chr4.3 | exon | 9770792 | 9770851 | 9770792 | ID=MS.gene030746.t1.exon2;Parent=MS.gene030746.t1 |
chr4.3 | CDS | 9770792 | 9770851 | 9770792 | ID=cds.MS.gene030746.t1;Parent=MS.gene030746.t1 |
chr4.3 | exon | 9770641 | 9770715 | 9770641 | ID=MS.gene030746.t1.exon3;Parent=MS.gene030746.t1 |
chr4.3 | CDS | 9770641 | 9770715 | 9770641 | ID=cds.MS.gene030746.t1;Parent=MS.gene030746.t1 |
chr4.3 | exon | 9770473 | 9770536 | 9770473 | ID=MS.gene030746.t1.exon4;Parent=MS.gene030746.t1 |
chr4.3 | CDS | 9770473 | 9770536 | 9770473 | ID=cds.MS.gene030746.t1;Parent=MS.gene030746.t1 |
chr4.3 | exon | 9769349 | 9769620 | 9769349 | ID=MS.gene030746.t1.exon5;Parent=MS.gene030746.t1 |
chr4.3 | CDS | 9769349 | 9769620 | 9769349 | ID=cds.MS.gene030746.t1;Parent=MS.gene030746.t1 |
chr4.3 | exon | 9769023 | 9769250 | 9769023 | ID=MS.gene030746.t1.exon6;Parent=MS.gene030746.t1 |
chr4.3 | CDS | 9769023 | 9769250 | 9769023 | ID=cds.MS.gene030746.t1;Parent=MS.gene030746.t1 |
chr4.3 | exon | 9768629 | 9768781 | 9768629 | ID=MS.gene030746.t1.exon7;Parent=MS.gene030746.t1 |
chr4.3 | CDS | 9768629 | 9768781 | 9768629 | ID=cds.MS.gene030746.t1;Parent=MS.gene030746.t1 |
Gene Sequence |
Protein sequence |