AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030746


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030746.t1 MTR_8g091650 98.382 309 5 0 1 309 50 358 0.0 631
MS.gene030746.t1 MTR_8g091650 88.116 345 5 1 1 309 50 394 0.0 612
MS.gene030746.t1 MTR_8g091650 98.239 284 5 0 26 309 2 285 0.0 579
MS.gene030746.t1 MTR_3g087940 71.935 310 85 2 1 309 55 363 2.31e-165 464
MS.gene030746.t1 MTR_8g040120 52.234 291 125 4 26 307 181 466 2.52e-94 287
MS.gene030746.t1 MTR_3g073560 50.853 293 141 2 16 305 53 345 6.11e-94 290
MS.gene030746.t1 MTR_7g089800 51.546 291 127 4 26 307 138 423 7.86e-94 285
MS.gene030746.t1 MTR_5g060950 51.034 290 141 1 16 304 57 346 1.25e-93 282
MS.gene030746.t1 MTR_7g089800 51.546 291 127 4 26 307 167 452 1.72e-93 285
MS.gene030746.t1 MTR_2g086420 50.526 285 129 4 26 307 193 468 2.68e-90 278
MS.gene030746.t1 MTR_2g086420 50.526 285 129 4 26 307 194 469 2.78e-90 278
MS.gene030746.t1 MTR_7g092750 45.425 306 159 3 10 307 57 362 2.08e-89 271
MS.gene030746.t1 MTR_5g054900 48.797 291 137 3 25 307 67 353 2.59e-88 268
MS.gene030746.t1 MTR_7g092750 45.425 306 159 3 10 307 158 463 2.71e-88 271
MS.gene030746.t1 MTR_5g054900 48.621 290 135 3 25 307 67 349 1.45e-87 266
MS.gene030746.t1 MTR_5g054900 48.797 291 137 3 25 307 148 434 3.10e-87 268
MS.gene030746.t1 MTR_5g054900 48.621 290 135 3 25 307 178 460 3.83e-86 266
MS.gene030746.t1 MTR_4g053250 47.735 287 139 3 22 307 185 461 5.67e-85 264
MS.gene030746.t1 MTR_1g111310 44.828 290 151 4 25 307 420 707 9.58e-78 251
MS.gene030746.t1 MTR_1g111310 44.681 282 143 4 25 301 53 326 7.92e-69 227
MS.gene030746.t1 MTR_7g092750 41.503 306 145 4 10 307 158 437 4.33e-74 234
MS.gene030746.t1 MTR_0126s0080 43.462 260 138 4 10 260 200 459 1.10e-63 208
MS.gene030746.t1 MTR_3g044820 44.848 165 83 4 25 181 44 208 1.53e-40 140
MS.gene030746.t1 MTR_1g090370 33.040 227 126 6 80 300 22 228 2.22e-30 114
MS.gene030746.t1 MTR_8g094690 25.806 248 149 5 84 296 2 249 1.17e-13 70.1
MS.gene030746.t1 MTR_1g111320 53.333 60 27 1 25 83 145 204 4.86e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030746.t1 AT5G10030 65.595 311 103 3 1 308 54 363 3.38e-144 410
MS.gene030746.t1 AT5G10030 65.595 311 103 3 1 308 54 363 3.38e-144 410
MS.gene030746.t1 AT5G10030 65.595 311 103 3 1 308 54 363 3.38e-144 410
MS.gene030746.t1 AT5G10030 65.595 311 103 3 1 308 54 363 3.38e-144 410
MS.gene030746.t1 AT5G10030 65.595 311 103 3 1 308 54 363 3.38e-144 410
MS.gene030746.t1 AT5G65210 64.630 311 106 3 1 308 58 367 1.20e-142 407
MS.gene030746.t1 AT5G65210 64.630 311 106 3 1 308 58 367 1.20e-142 407
MS.gene030746.t1 AT5G65210 64.630 311 106 3 1 308 58 367 1.20e-142 407
MS.gene030746.t1 AT5G65210 64.630 311 106 3 1 308 58 367 1.20e-142 407
MS.gene030746.t1 AT5G65210 64.630 311 106 3 1 308 58 367 1.20e-142 407
MS.gene030746.t1 AT5G65210 64.630 311 106 3 1 308 58 367 1.20e-142 407
MS.gene030746.t1 AT5G65210 65.646 294 98 2 18 308 4 297 1.55e-139 396
MS.gene030746.t1 AT1G22070 58.305 295 120 3 16 307 88 382 5.03e-118 345
MS.gene030746.t1 AT1G77920 57.840 287 111 2 23 308 90 367 1.05e-117 343
MS.gene030746.t1 AT5G06950 52.759 290 124 4 26 307 46 330 1.95e-93 280
MS.gene030746.t1 AT5G06950 52.759 290 124 4 26 307 46 330 1.95e-93 280
MS.gene030746.t1 AT5G06950 52.759 290 124 4 26 307 46 330 1.95e-93 280
MS.gene030746.t1 AT5G06950 52.759 290 124 4 26 307 46 330 1.95e-93 280
MS.gene030746.t1 AT5G06950 52.759 290 124 4 26 307 46 330 1.95e-93 280
MS.gene030746.t1 AT1G08320 50.704 284 130 4 26 307 54 329 2.13e-93 281
MS.gene030746.t1 AT1G08320 50.704 284 130 4 26 307 54 329 2.13e-93 281
MS.gene030746.t1 AT1G08320 50.704 284 130 4 26 307 178 453 1.04e-91 281
MS.gene030746.t1 AT1G08320 50.704 284 130 4 26 307 178 453 1.04e-91 281
MS.gene030746.t1 AT1G08320 50.704 284 130 4 26 307 178 453 1.04e-91 281
MS.gene030746.t1 AT3G12250 51.186 295 131 4 21 307 14 303 1.53e-91 275
MS.gene030746.t1 AT3G12250 51.186 295 131 4 21 307 41 330 3.02e-91 275
MS.gene030746.t1 AT3G12250 51.186 295 131 4 21 307 41 330 3.02e-91 275
MS.gene030746.t1 AT3G12250 51.186 295 131 4 21 307 41 330 3.02e-91 275
MS.gene030746.t1 AT3G12250 51.186 295 131 4 21 307 41 330 3.02e-91 275
MS.gene030746.t1 AT3G12250 48.589 319 143 5 5 307 42 355 6.33e-91 275
MS.gene030746.t1 AT3G12250 51.186 295 131 4 21 307 35 324 6.64e-91 274
MS.gene030746.t1 AT5G06960 50.865 289 131 3 26 307 26 310 4.45e-90 271
MS.gene030746.t1 AT5G06960 50.865 289 131 3 26 307 46 330 5.81e-90 271
MS.gene030746.t1 AT5G06960 50.865 289 131 3 26 307 46 330 5.81e-90 271
MS.gene030746.t1 AT5G06839 45.779 308 151 4 16 307 108 415 1.19e-85 263
MS.gene030746.t1 AT5G06839 45.779 308 151 4 16 307 151 458 1.76e-85 264
MS.gene030746.t1 AT5G06839 45.631 309 151 5 16 307 108 416 8.54e-84 259
MS.gene030746.t1 AT1G68640 43.182 308 166 3 7 307 147 452 3.65e-75 238
MS.gene030746.t1 AT1G58330 26.906 223 146 6 90 297 3 223 1.38e-14 72.0

Find 61 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATCAGTGATATACAAAT+TGG 0.178312 4.3:-9769512 MS.gene030746:CDS
GGATTGGATTCTAATAATTT+AGG 0.214016 4.3:-9770496 MS.gene030746:CDS
TAAGAGTCGTTTGAAGAAAA+AGG 0.214551 4.3:-9770791 MS.gene030746:intron
TCTGTCAATGGTTCAATTAA+AGG 0.231131 4.3:+9769219 None:intergenic
TGCTCGATGGCTGCTTGCTT+TGG 0.257053 4.3:-9768697 MS.gene030746:CDS
TAGTAACTGTGTTAGCTTCT+TGG 0.278886 4.3:+9771403 None:intergenic
ATTCCAACATTTGTCTGTTT+AGG 0.286691 4.3:+9769555 None:intergenic
TAGTCAGAGGATGCTTCTTT+TGG 0.297753 4.3:-9771456 MS.gene030746:CDS
CAAATTGGGGAACTTGTAAA+TGG 0.313309 4.3:-9769497 MS.gene030746:CDS
TTTGCTGGCTCTGTAAATTC+AGG 0.350309 4.3:-9770472 MS.gene030746:intron
GCATGACTTCTCAAGATTAT+AGG 0.355362 4.3:+9769179 None:intergenic
AAATTGCAGGGATTGTATAT+TGG 0.363352 4.3:-9770523 MS.gene030746:intron
AGCTAACACAGTTACTAATA+AGG 0.363384 4.3:-9771397 MS.gene030746:intron
GTGTCGTTTAAAGCTGTTAC+AGG 0.364560 4.3:-9770670 MS.gene030746:CDS
GCTCGATGGCTGCTTGCTTT+GGG 0.374474 4.3:-9768696 MS.gene030746:CDS
ATTGTATATTGGTGGTGGAT+TGG 0.406379 4.3:-9770512 MS.gene030746:CDS
AATAGAGAGGCTGGAAGCTC+TGG 0.410741 4.3:-9769040 MS.gene030746:CDS
AGGTGTTACCTTTAGAAGTT+CGG 0.411150 4.3:+9769340 None:intergenic
ATATCAGTGATATACAAATT+GGG 0.413722 4.3:-9769511 MS.gene030746:CDS
CTGTCAATGGTTCAATTAAA+GGG 0.420015 4.3:+9769220 None:intergenic
TCGACCCTCCGAACTTCTAA+AGG 0.428847 4.3:-9769348 MS.gene030746:intron
AACCGTTGTTCCTCTGTCAA+TGG 0.441867 4.3:+9769207 None:intergenic
TAAGGGATTTGAGCAAACTT+TGG 0.444298 4.3:-9768656 MS.gene030746:CDS
GTGAATACTTTCAACGCCTA+AGG 0.464354 4.3:-9768674 MS.gene030746:CDS
AGATGCCCTTTCACAAGGTA+TGG 0.480625 4.3:-9769145 MS.gene030746:CDS
AGAGCTAGATCATACAAAAC+AGG 0.481991 4.3:-9770640 MS.gene030746:intron
GGATATTGCAATAGAGAGGC+TGG 0.484290 4.3:-9769049 MS.gene030746:CDS
AAAGGGCATCTTCTGCTTGT+CGG 0.484492 4.3:+9769157 None:intergenic
TAACTGTGTTAGCTTCTTGG+TGG 0.484546 4.3:+9771406 None:intergenic
TCTGGCTAGCTTTGTGAACC+AGG 0.487895 4.3:-9769022 MS.gene030746:intron
CAGGGATTGTATATTGGTGG+TGG 0.489623 4.3:-9770517 MS.gene030746:CDS
CTTGTTGACACAGTTGCAGC+AGG 0.514923 4.3:-9769105 MS.gene030746:CDS
AAAGTTTGCTCAAATCCCTT+AGG 0.521782 4.3:+9768658 None:intergenic
AGACCTAAACAGACAAATGT+TGG 0.522384 4.3:-9769558 MS.gene030746:CDS
TGCAGGTTCACGAGGACGAT+TGG 0.528063 4.3:+9768632 None:intergenic
TGAATACTTTCAACGCCTAA+GGG 0.549102 4.3:-9768673 MS.gene030746:CDS
ATGTGGAAAACAACAGCTGA+AGG 0.550259 4.3:-9769395 MS.gene030746:CDS
AGACAAATGTTGGAATTGAA+AGG 0.555362 4.3:-9769548 MS.gene030746:CDS
ACAGGCTGATCATCTTCGAC+AGG 0.558370 4.3:-9768763 MS.gene030746:intron
GCAGCAGGACAACTCGTTGA+AGG 0.566836 4.3:-9769090 MS.gene030746:CDS
CTCTTGCATGAAGACTATGC+AGG 0.569640 4.3:+9768615 None:intergenic
AGGAACTTACATTCCACAGA+TGG 0.575188 4.3:-9769070 MS.gene030746:CDS
CCGTACGTCAAACTGCTCGA+TGG 0.578154 4.3:-9768710 MS.gene030746:CDS
TATCAGTGATATACAAATTG+GGG 0.581840 4.3:-9769510 MS.gene030746:CDS
TTGCAGGGATTGTATATTGG+TGG 0.592067 4.3:-9770520 MS.gene030746:intron
TAAGATGGAGTATGAACACT+GGG 0.600728 4.3:-9769585 MS.gene030746:CDS
TGTTACCTTTAGAAGTTCGG+AGG 0.601165 4.3:+9769343 None:intergenic
TTAAGATGGAGTATGAACAC+TGG 0.603260 4.3:-9769586 MS.gene030746:CDS
AACCATTGACAGAGGAACAA+CGG 0.614266 4.3:-9769209 MS.gene030746:CDS
GCAGAAGATGCCCTTTCACA+AGG 0.620831 4.3:-9769150 MS.gene030746:CDS
TTTAATTGAACCATTGACAG+AGG 0.625048 4.3:-9769217 MS.gene030746:CDS
TCTATGTTATCACTGGCATG+TGG 0.630097 4.3:-9769412 MS.gene030746:CDS
CCATCGAGCAGTTTGACGTA+CGG 0.630335 4.3:+9768710 None:intergenic
TCTATTGCAATATCCATCTG+TGG 0.636700 4.3:+9769057 None:intergenic
GTTACCTTTAGAAGTTCGGA+GGG 0.640489 4.3:+9769344 None:intergenic
GAAGACTATGCAGGTTCACG+AGG 0.645466 4.3:+9768624 None:intergenic
AGATGGATATTGCAATAGAG+AGG 0.647680 4.3:-9769053 MS.gene030746:CDS
TGTGGAAAACAACAGCTGAA+GGG 0.647786 4.3:-9769394 MS.gene030746:CDS
GTTTGAAATAGTGATTCATG+AGG 0.660995 4.3:+9769474 None:intergenic
ACGTCTCGCACAAAATCGAG+AGG 0.680873 4.3:-9770821 MS.gene030746:CDS
GATGGAGTATGAACACTGGG+TGG 0.682481 4.3:-9769582 MS.gene030746:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAACAAAATTTATTAGA+GGG - chr4.3:9770146-9770165 MS.gene030746:intron 15.0%
!! TAAGTAACAAAATTTATTAG+AGG - chr4.3:9770145-9770164 MS.gene030746:intron 15.0%
!! TTGACAATAATAAACTTAAT+TGG + chr4.3:9771299-9771318 None:intergenic 15.0%
!!! TAAGTTTTTATAAAGCAAAA+AGG + chr4.3:9769857-9769876 None:intergenic 15.0%
!!! TGATATATAATATTAGCTTT+GGG - chr4.3:9770379-9770398 MS.gene030746:intron 15.0%
!!! TTGATATATAATATTAGCTT+TGG - chr4.3:9770378-9770397 MS.gene030746:intron 15.0%
!! AATATATAACATACATTACC+TGG + chr4.3:9771081-9771100 None:intergenic 20.0%
!! ACAAAAGCAACATTAATTAA+AGG + chr4.3:9770008-9770027 None:intergenic 20.0%
!! ATATCAGTGATATACAAATT+GGG - chr4.3:9770571-9770590 MS.gene030746:intron 20.0%
!! CAAATTAAAAAGGTTAAACT+AGG - chr4.3:9771257-9771276 MS.gene030746:intron 20.0%
!! CACAAATTACCAAATTAAAA+AGG - chr4.3:9771247-9771266 MS.gene030746:intron 20.0%
!! CCTTTAACAAAATTTCAAAA+TGG + chr4.3:9769013-9769032 None:intergenic 20.0%
!! TAAGTTTATTATTGTCAAAC+AGG - chr4.3:9771301-9771320 MS.gene030746:intron 20.0%
!!! AAACTTTGAGAAAATTCTTT+AGG - chr4.3:9769795-9769814 MS.gene030746:intron 20.0%
!!! AGAAATAACAACTTTTAAGA+TGG - chr4.3:9770482-9770501 MS.gene030746:CDS 20.0%
!!! AGTTGTTATTTCTGTAAATT+AGG + chr4.3:9770475-9770494 None:intergenic 20.0%
!!! CCATTTTGAAATTTTGTTAA+AGG - chr4.3:9769010-9769029 MS.gene030746:intron 20.0%
!!! CTAGTTTAACCTTTTTAATT+TGG + chr4.3:9771259-9771278 None:intergenic 20.0%
!!! GAAATTTTGGAAGAAATTAT+TGG + chr4.3:9770228-9770247 None:intergenic 20.0%
! AACATTAATTAAAGGAAAGG+AGG + chr4.3:9770000-9770019 None:intergenic 25.0%
! ACATTAATTAAAGGAAAGGA+GGG + chr4.3:9769999-9770018 None:intergenic 25.0%
! AGCAACATTAATTAAAGGAA+AGG + chr4.3:9770003-9770022 None:intergenic 25.0%
! CAAAAAAGTGATTTCATCAT+AGG + chr4.3:9769700-9769719 None:intergenic 25.0%
! CATATCAGTGATATACAAAT+TGG - chr4.3:9770570-9770589 MS.gene030746:intron 25.0%
! CGTATAATTTAGATTAGATG+AGG - chr4.3:9771105-9771124 MS.gene030746:intron 25.0%
! GATATTGAACAATATGAAGT+AGG + chr4.3:9769496-9769515 None:intergenic 25.0%
! GGATTGGATTCTAATAATTT+AGG - chr4.3:9769586-9769605 MS.gene030746:CDS 25.0%
! TATCAGTGATATACAAATTG+GGG - chr4.3:9770572-9770591 MS.gene030746:intron 25.0%
!! CTTACTGCAGATATATATTT+TGG - chr4.3:9769873-9769892 MS.gene030746:intron 25.0%
!! TCAATCACATTAATCCATTT+TGG - chr4.3:9768934-9768953 MS.gene030746:intron 25.0%
!! TTTGGTAATTTGTGTGTTAA+TGG + chr4.3:9771241-9771260 None:intergenic 25.0%
!!! GTTGGTTTGTTATTAAATTC+TGG - chr4.3:9769632-9769651 MS.gene030746:intron 25.0%
!!! TCTAATAATTTAGGTTTTGC+TGG - chr4.3:9769595-9769614 MS.gene030746:CDS 25.0%
!!! TCTATTCTCAAACTAGTTTT+TGG - chr4.3:9770437-9770456 MS.gene030746:intron 25.0%
!!! TGCGTTTTTTTATGCTTATA+AGG - chr4.3:9769215-9769234 MS.gene030746:CDS 25.0%
!!! TGTATGGACTATTTTTTACA+CGG - chr4.3:9768855-9768874 MS.gene030746:intron 25.0%
AAATTGCAGGGATTGTATAT+TGG - chr4.3:9769559-9769578 MS.gene030746:CDS 30.0%
AACCTACAAAATCAACTACA+AGG - chr4.3:9769764-9769783 MS.gene030746:intron 30.0%
ACCTACAAAATCAACTACAA+GGG - chr4.3:9769765-9769784 MS.gene030746:intron 30.0%
AGACAAATGTTGGAATTGAA+AGG - chr4.3:9770534-9770553 MS.gene030746:intron 30.0%
AGCTAACACAGTTACTAATA+AGG - chr4.3:9768685-9768704 MS.gene030746:CDS 30.0%
ATCGATATACTTGATCAACA+TGG - chr4.3:9770766-9770785 MS.gene030746:intron 30.0%
ATTCCAACATTTGTCTGTTT+AGG + chr4.3:9770530-9770549 None:intergenic 30.0%
ATTGCTCAATCAGTATTTCA+TGG - chr4.3:9769039-9769058 MS.gene030746:CDS 30.0%
CTAAGTTTCTACAAAGTTTG+AGG + chr4.3:9769100-9769119 None:intergenic 30.0%
CTGTCAATGGTTCAATTAAA+GGG + chr4.3:9770865-9770884 None:intergenic 30.0%
GAATAGAGTTCAATACAAGA+AGG + chr4.3:9770424-9770443 None:intergenic 30.0%
GAATCAAATGCTTGTTTGTT+TGG + chr4.3:9769352-9769371 None:intergenic 30.0%
TAAGAGTCGTTTGAAGAAAA+AGG - chr4.3:9769291-9769310 MS.gene030746:intron 30.0%
TCCATACATGTTTGATATGA+CGG + chr4.3:9768843-9768862 None:intergenic 30.0%
TCGATATACTTGATCAACAT+GGG - chr4.3:9770767-9770786 MS.gene030746:intron 30.0%
TCTGTCAATGGTTCAATTAA+AGG + chr4.3:9770866-9770885 None:intergenic 30.0%
TGGATTCAGAGTTTCAAAAT+TGG + chr4.3:9770208-9770227 None:intergenic 30.0%
TTAATGCAGAGAGAAATGTT+TGG - chr4.3:9770112-9770131 MS.gene030746:intron 30.0%
TTGAACTTAACATTGCACAT+GGG + chr4.3:9768884-9768903 None:intergenic 30.0%
TTTAATTGAACCATTGACAG+AGG - chr4.3:9770865-9770884 MS.gene030746:intron 30.0%
! AGAGAGAAATGTTTGGAATA+AGG - chr4.3:9770119-9770138 MS.gene030746:intron 30.0%
! GATGTTTTCTATGTTATCAC+TGG - chr4.3:9770663-9770682 MS.gene030746:CDS 30.0%
! GTTGATCAAGTATATCGATT+AGG + chr4.3:9770765-9770784 None:intergenic 30.0%
! GTTTGAAATAGTGATTCATG+AGG + chr4.3:9770611-9770630 None:intergenic 30.0%
! TGGGTTGAACAAAATTAATG+TGG + chr4.3:9768820-9768839 None:intergenic 30.0%
! TTCCAAAATTTCAAGTAAGC+TGG - chr4.3:9770236-9770255 MS.gene030746:intron 30.0%
! TTTTTCCATACCTTGTGAAA+GGG + chr4.3:9770945-9770964 None:intergenic 30.0%
!! ACTGCAGATATATATTTTGG+TGG - chr4.3:9769876-9769895 MS.gene030746:intron 30.0%
!! AGTTTTATCAGAAGTATGCA+TGG - chr4.3:9771203-9771222 MS.gene030746:intron 30.0%
!!! AGCATTTTAGAACCACATTT+TGG - chr4.3:9769133-9769152 MS.gene030746:CDS 30.0%
!!! GATGCTTCTTTTGGAATATT+GGG - chr4.3:9768635-9768654 MS.gene030746:CDS 30.0%
!!! GTATGGACTATTTTTTACAC+GGG - chr4.3:9768856-9768875 MS.gene030746:intron 30.0%
!!! TATGGACTATTTTTTACACG+GGG - chr4.3:9768857-9768876 MS.gene030746:intron 30.0%
AAAAGGACATGCATGCAAAA+AGG + chr4.3:9769840-9769859 None:intergenic 35.0%
AAAAGTCGACCAATCTGAAA+GGG - chr4.3:9768957-9768976 MS.gene030746:intron 35.0%
ACAAGGTATGGAAAAACTAC+AGG - chr4.3:9770949-9770968 MS.gene030746:intron 35.0%
ACATCCAAAATTTGGAAGCA+GGG + chr4.3:9769189-9769208 None:intergenic 35.0%
ACCGTCATATCAAACATGTA+TGG - chr4.3:9768839-9768858 MS.gene030746:intron 35.0%
AGACCTAAACAGACAAATGT+TGG - chr4.3:9770524-9770543 MS.gene030746:intron 35.0%
AGAGCTAGATCATACAAAAC+AGG - chr4.3:9769442-9769461 MS.gene030746:CDS 35.0%
AGATGGATATTGCAATAGAG+AGG - chr4.3:9771029-9771048 MS.gene030746:intron 35.0%
AGTGAGGTCATTGCTAAAAT+AGG + chr4.3:9769961-9769980 None:intergenic 35.0%
ATACATGTTTGATATGACGG+TGG + chr4.3:9768840-9768859 None:intergenic 35.0%
ATGTTTGTGATGAGATTTGC+AGG - chr4.3:9770832-9770851 MS.gene030746:CDS 35.0%
CAAATTGGGGAACTTGTAAA+TGG - chr4.3:9770585-9770604 MS.gene030746:intron 35.0%
CAAGAAGGAAAACATACTCA+AGG + chr4.3:9770409-9770428 None:intergenic 35.0%
CAAGGTATGGAAAAACTACA+GGG - chr4.3:9770950-9770969 MS.gene030746:intron 35.0%
CACAAACATACATTATGCCA+TGG + chr4.3:9770821-9770840 None:intergenic 35.0%
CATCAAGAGATTGACAAATG+AGG + chr4.3:9769534-9769553 None:intergenic 35.0%
CGATATACTTGATCAACATG+GGG - chr4.3:9770768-9770787 MS.gene030746:intron 35.0%
CTTGATGCAACAAAATTGCA+GGG - chr4.3:9769547-9769566 MS.gene030746:CDS 35.0%
GCATGACTTCTCAAGATTAT+AGG + chr4.3:9770906-9770925 None:intergenic 35.0%
GTCGTTTGAAGAAAAAGGTT+TGG - chr4.3:9769296-9769315 MS.gene030746:intron 35.0%
GTTGAACTTAACATTGCACA+TGG + chr4.3:9768885-9768904 None:intergenic 35.0%
TAAAACTTATACTCCTGCCA+TGG + chr4.3:9771190-9771209 None:intergenic 35.0%
TAAGATGGAGTATGAACACT+GGG - chr4.3:9770497-9770516 MS.gene030746:CDS 35.0%
TAAGGGATTTGAGCAAACTT+TGG - chr4.3:9771426-9771445 MS.gene030746:CDS 35.0%
TACATGTTTGATATGACGGT+GGG + chr4.3:9768839-9768858 None:intergenic 35.0%
TCACACCAAAAAATTTCCAC+AGG + chr4.3:9770179-9770198 None:intergenic 35.0%
TCTATTGCAATATCCATCTG+TGG + chr4.3:9771028-9771047 None:intergenic 35.0%
TCTTGATGCAACAAAATTGC+AGG - chr4.3:9769546-9769565 MS.gene030746:CDS 35.0%
TGAATACTTTCAACGCCTAA+GGG - chr4.3:9771409-9771428 MS.gene030746:CDS 35.0%
TGTCACTGCTCTTATAAATG+TGG - chr4.3:9769670-9769689 MS.gene030746:intron 35.0%
TTAAGATGGAGTATGAACAC+TGG - chr4.3:9770496-9770515 MS.gene030746:CDS 35.0%
TTAGACACTACATTCTGTTC+TGG - chr4.3:9770355-9770374 MS.gene030746:intron 35.0%
TTAGATGAGGTTATGAGTAG+TGG - chr4.3:9771118-9771137 MS.gene030746:intron 35.0%
TTGAGGCATAAGGAAAGAAT+GGG + chr4.3:9769083-9769102 None:intergenic 35.0%
! AAAGTTTGCTCAAATCCCTT+AGG + chr4.3:9771427-9771446 None:intergenic 35.0%
! AGCCAGCTTACTTGAAATTT+TGG + chr4.3:9770241-9770260 None:intergenic 35.0%
! AGGTGTTACCTTTAGAAGTT+CGG + chr4.3:9770745-9770764 None:intergenic 35.0%
! GTTTTTCCATACCTTGTGAA+AGG + chr4.3:9770946-9770965 None:intergenic 35.0%
! TAGTAACTGTGTTAGCTTCT+TGG + chr4.3:9768682-9768701 None:intergenic 35.0%
! TCTACAAAGTTTGAGGCATA+AGG + chr4.3:9769093-9769112 None:intergenic 35.0%
! TTGTCGCTTCAACATAATCA+AGG - chr4.3:9768792-9768811 MS.gene030746:intron 35.0%
! TTTGAGGCATAAGGAAAGAA+TGG + chr4.3:9769084-9769103 None:intergenic 35.0%
!! ATTGGTCGACTTTTCCAAAA+TGG + chr4.3:9768951-9768970 None:intergenic 35.0%
!! ATTGTATATTGGTGGTGGAT+TGG - chr4.3:9769570-9769589 MS.gene030746:CDS 35.0%
!! TCCCTTGTAGTTGATTTTGT+AGG + chr4.3:9769769-9769788 None:intergenic 35.0%
!!! CTACTCCTGTGGAAATTTTT+TGG - chr4.3:9770171-9770190 MS.gene030746:intron 35.0%
!!! GCAGATATATATTTTGGTGG+TGG - chr4.3:9769879-9769898 MS.gene030746:intron 35.0%
!!! GGATGCTTCTTTTGGAATAT+TGG - chr4.3:9768634-9768653 MS.gene030746:CDS 35.0%
AACCATTGACAGAGGAACAA+CGG - chr4.3:9770873-9770892 MS.gene030746:intron 40.0%
AATAGGATTTGAGTAGCTGC+TGG + chr4.3:9769944-9769963 None:intergenic 40.0%
AGGAACTTACATTCCACAGA+TGG - chr4.3:9771012-9771031 MS.gene030746:intron 40.0%
ATGTGGAAAACAACAGCTGA+AGG - chr4.3:9770687-9770706 MS.gene030746:CDS 40.0%
CAAGCCAGACATCCAAAATT+TGG + chr4.3:9769197-9769216 None:intergenic 40.0%
CATCCAAAATTTGGAAGCAG+GGG + chr4.3:9769188-9769207 None:intergenic 40.0%
GAAAAGTCGACCAATCTGAA+AGG - chr4.3:9768956-9768975 MS.gene030746:intron 40.0%
GACACAACAGTTATGAGTAG+TGG - chr4.3:9771150-9771169 MS.gene030746:intron 40.0%
GACATCCAAAATTTGGAAGC+AGG + chr4.3:9769190-9769209 None:intergenic 40.0%
GAGTATCTGAATGTACAGTG+AGG + chr4.3:9769977-9769996 None:intergenic 40.0%
GATTCCTGACGTTTCATAAC+AGG - chr4.3:9769367-9769386 MS.gene030746:CDS 40.0%
GTGAATACTTTCAACGCCTA+AGG - chr4.3:9771408-9771427 MS.gene030746:CDS 40.0%
TATGTTGAAGCGACAAAGTG+CGG + chr4.3:9768788-9768807 None:intergenic 40.0%
TCTATGTTATCACTGGCATG+TGG - chr4.3:9770670-9770689 MS.gene030746:CDS 40.0%
TGCAAAGTGAGTCCAAAATG+TGG + chr4.3:9769148-9769167 None:intergenic 40.0%
TGGAAAACAATGCTGATCCA+TGG - chr4.3:9771170-9771189 MS.gene030746:intron 40.0%
TGTGGAAAACAACAGCTGAA+GGG - chr4.3:9770688-9770707 MS.gene030746:CDS 40.0%
TTGCAGGGATTGTATATTGG+TGG - chr4.3:9769562-9769581 MS.gene030746:CDS 40.0%
! CTGCTGTCATATTTCTACCA+TGG - chr4.3:9770801-9770820 MS.gene030746:CDS 40.0%
! GAAGGGTTTTTCTTGTGGAT+TGG - chr4.3:9770705-9770724 MS.gene030746:intron 40.0%
! GCTTCCAAATTTTGGATGTC+TGG - chr4.3:9769190-9769209 MS.gene030746:CDS 40.0%
! GTTACCTTTAGAAGTTCGGA+GGG + chr4.3:9770741-9770760 None:intergenic 40.0%
! TAACTGTGTTAGCTTCTTGG+TGG + chr4.3:9768679-9768698 None:intergenic 40.0%
! TGTTACCTTTAGAAGTTCGG+AGG + chr4.3:9770742-9770761 None:intergenic 40.0%
! TTGCTACTTGCTTGATATCG+CGG - chr4.3:9768718-9768737 MS.gene030746:CDS 40.0%
!! GTGTCGTTTAAAGCTGTTAC+AGG - chr4.3:9769412-9769431 MS.gene030746:CDS 40.0%
!! TTTGCTGGCTCTGTAAATTC+AGG - chr4.3:9769610-9769629 MS.gene030746:intron 40.0%
AAACAATGCTGATCCATGGC+AGG - chr4.3:9771174-9771193 MS.gene030746:intron 45.0%
AACCGTTGTTCCTCTGTCAA+TGG + chr4.3:9770878-9770897 None:intergenic 45.0%
ACTTTGCACTGCAGATTAGG+AGG - chr4.3:9769160-9769179 MS.gene030746:CDS 45.0%
AGATGCCCTTTCACAAGGTA+TGG - chr4.3:9770937-9770956 MS.gene030746:intron 45.0%
AGGCCAATAAGCCCTAGTTT+AGG + chr4.3:9769906-9769925 None:intergenic 45.0%
CAGGGATTGTATATTGGTGG+TGG - chr4.3:9769565-9769584 MS.gene030746:CDS 45.0%
CTCACTTTGCACTGCAGATT+AGG - chr4.3:9769157-9769176 MS.gene030746:CDS 45.0%
CTTTGCACTGCAGATTAGGA+GGG - chr4.3:9769161-9769180 MS.gene030746:CDS 45.0%
GCTGGCTATTATGTACCTAG+TGG - chr4.3:9770254-9770273 MS.gene030746:intron 45.0%
GGACCTAAACTAGGGCTTAT+TGG - chr4.3:9769900-9769919 MS.gene030746:intron 45.0%
GGATATTGCAATAGAGAGGC+TGG - chr4.3:9771033-9771052 MS.gene030746:intron 45.0%
GTGATGAGATTTGCAGGTTC+TGG - chr4.3:9770838-9770857 MS.gene030746:intron 45.0%
TGAGCCTGTTATGAAACGTC+AGG + chr4.3:9769374-9769393 None:intergenic 45.0%
! CAGCTGAAGGGTTTTTCTTG+TGG - chr4.3:9770700-9770719 MS.gene030746:intron 45.0%
!! AAAGGGCATCTTCTGCTTGT+CGG + chr4.3:9770928-9770947 None:intergenic 45.0%
!! ATTAGAGGGTACTACTCCTG+TGG - chr4.3:9770160-9770179 MS.gene030746:intron 45.0%
!! CTGGCTCTGTAAATTCAGGT+TGG - chr4.3:9769614-9769633 MS.gene030746:intron 45.0%
!! TTGGTGGTGGACCTAAACTA+GGG - chr4.3:9769892-9769911 MS.gene030746:intron 45.0%
!! TTTGGTGGTGGACCTAAACT+AGG - chr4.3:9769891-9769910 MS.gene030746:intron 45.0%
!!! GGGTTTTTCTTGTGGATTGG+AGG - chr4.3:9770708-9770727 MS.gene030746:intron 45.0%
AATAGAGAGGCTGGAAGCTC+TGG - chr4.3:9771042-9771061 MS.gene030746:intron 50.0%
ACAGGCTGATCATCTTCGAC+AGG - chr4.3:9771319-9771338 MS.gene030746:intron 50.0%
ACGTCTCGCACAAAATCGAG+AGG - chr4.3:9769261-9769280 MS.gene030746:intron 50.0%
CCATCGAGCAGTTTGACGTA+CGG + chr4.3:9771375-9771394 None:intergenic 50.0%
CTTGTTGACACAGTTGCAGC+AGG - chr4.3:9770977-9770996 MS.gene030746:intron 50.0%
GATGGAGTATGAACACTGGG+TGG - chr4.3:9770500-9770519 MS.gene030746:CDS 50.0%
GATTTGAGTAGCTGCTGGTC+TGG + chr4.3:9769939-9769958 None:intergenic 50.0%
GCAGAAGATGCCCTTTCACA+AGG - chr4.3:9770932-9770951 MS.gene030746:intron 50.0%
TCGACCCTCCGAACTTCTAA+AGG - chr4.3:9770734-9770753 MS.gene030746:intron 50.0%
TCGCATCAGCCCTTTCAGAT+TGG + chr4.3:9768969-9768988 None:intergenic 50.0%
TTGTACACAGTGCTGCCACT+AGG + chr4.3:9770272-9770291 None:intergenic 50.0%
! GGCTTATTGGCCTCACCATT+GGG - chr4.3:9769913-9769932 MS.gene030746:intron 50.0%
! GGTCCCCTGCTTCCAAATTT+TGG - chr4.3:9769182-9769201 MS.gene030746:CDS 50.0%
!! TCTGGCTAGCTTTGTGAACC+AGG - chr4.3:9771060-9771079 MS.gene030746:intron 50.0%
CCGTACGTCAAACTGCTCGA+TGG - chr4.3:9771372-9771391 MS.gene030746:intron 55.0%
GCAGCAGGACAACTCGTTGA+AGG - chr4.3:9770992-9771011 MS.gene030746:intron 55.0%
GCTCGATGGCTGCTTGCTTT+GGG - chr4.3:9771386-9771405 MS.gene030746:intron 55.0%
TGCAGGTTCACGAGGACGAT+TGG + chr4.3:9771453-9771472 None:intergenic 55.0%
TGCTCGATGGCTGCTTGCTT+TGG - chr4.3:9771385-9771404 MS.gene030746:intron 55.0%
! GGGCTTATTGGCCTCACCAT+TGG - chr4.3:9769912-9769931 MS.gene030746:intron 55.0%
! TAGCTGCTGGTCTGGCCCAA+TGG + chr4.3:9769931-9769950 None:intergenic 60.0%
! GCTGGTCTGGCCCAATGGTG+AGG + chr4.3:9769926-9769945 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 9768629 9771475 9768629 ID=MS.gene030746
chr4.3 mRNA 9768629 9771475 9768629 ID=MS.gene030746.t1;Parent=MS.gene030746
chr4.3 exon 9771398 9771475 9771398 ID=MS.gene030746.t1.exon1;Parent=MS.gene030746.t1
chr4.3 CDS 9771398 9771475 9771398 ID=cds.MS.gene030746.t1;Parent=MS.gene030746.t1
chr4.3 exon 9770792 9770851 9770792 ID=MS.gene030746.t1.exon2;Parent=MS.gene030746.t1
chr4.3 CDS 9770792 9770851 9770792 ID=cds.MS.gene030746.t1;Parent=MS.gene030746.t1
chr4.3 exon 9770641 9770715 9770641 ID=MS.gene030746.t1.exon3;Parent=MS.gene030746.t1
chr4.3 CDS 9770641 9770715 9770641 ID=cds.MS.gene030746.t1;Parent=MS.gene030746.t1
chr4.3 exon 9770473 9770536 9770473 ID=MS.gene030746.t1.exon4;Parent=MS.gene030746.t1
chr4.3 CDS 9770473 9770536 9770473 ID=cds.MS.gene030746.t1;Parent=MS.gene030746.t1
chr4.3 exon 9769349 9769620 9769349 ID=MS.gene030746.t1.exon5;Parent=MS.gene030746.t1
chr4.3 CDS 9769349 9769620 9769349 ID=cds.MS.gene030746.t1;Parent=MS.gene030746.t1
chr4.3 exon 9769023 9769250 9769023 ID=MS.gene030746.t1.exon6;Parent=MS.gene030746.t1
chr4.3 CDS 9769023 9769250 9769023 ID=cds.MS.gene030746.t1;Parent=MS.gene030746.t1
chr4.3 exon 9768629 9768781 9768629 ID=MS.gene030746.t1.exon7;Parent=MS.gene030746.t1
chr4.3 CDS 9768629 9768781 9768629 ID=cds.MS.gene030746.t1;Parent=MS.gene030746.t1
Gene Sequence

>MS.gene030746

TCAGAGGATGCTTCTTTTGGAATATTGGGAACATCTATCAAGTATGACCACCAAGAAGCTAACACAGTTACTAATAAGGTAAGATTGTGTTGCTACTTGCTTGATATCGCGGTGAGTTTGTCAAAATCACAGTGAGCTATCGTGATTTTGCAAAAGCCGCACTTTGTCGCTTCAACATAATCAAGGTACCACATTAATTTTGTTCAACCCACCGTCATATCAAACATGTATGGACTATTTTTTACACGGGGACCCATGTGCAATGTTAAGTTCAACTTGATACTTTTAAAAGAACAAAAAAAACTTCAATCACATTAATCCATTTTGGAAAAGTCGACCAATCTGAAAGGGCTGATGCGATAAATTTTTTACTTTCAGAGACCATTTTGAAATTTTGTTAAAGGAACTGAATTGCTCAATCAGTATTTCATGGACTAAATTGATGATACATCCCATTCTTTCCTTATGCCTCAAACTTTGTAGAAACTTAGAGTGACATCGAAAAGCATTTTAGAACCACATTTTGGACTCACTTTGCACTGCAGATTAGGAGGGTCCCCTGCTTCCAAATTTTGGATGTCTGGCTTGCGTTTTTTTATGCTTATAAGGTGATGAAACATGCAGATGCAAAGACGTCTCGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTGAAGAAAAAGGTTTGGACTTTTATACTTCATACATTCAAAGATGTACCAAACAAACAAGCATTTGATTCCTGACGTTTCATAACAGGCTCATATACAACAGTTAGAATCGTGTCGTTTAAAGCTGTTACAGGTAGAGCAAGAGCTAGATCATACAAAACAGGTAATGTGAAGATGAGTTAATAATATACTCCTACTTCATATTGTTCAATATCTACTTGTTTTTCTCTCCTCATTTGTCAATCTCTTGATGCAACAAAATTGCAGGGATTGTATATTGGTGGTGGATTGGATTCTAATAATTTAGGTTTTGCTGGCTCTGTAAATTCAGGTTGGTTTGTTATTAAATTCTGGTTCTTGATATTGATTTGTCACTGCTCTTATAAATGTGGTTATCCTATGATGAAATCACTTTTTTGTTTATTTTTAAATCATTTACATACTCTTATAAAAAAAACTCAATAACCTACAAAATCAACTACAAGGGATAAAGCAAACTTTGAGAAAATTCTTTAGGTTATGTGCTTTAGTTTGAACCTTTTTGCATGCATGTCCTTTTTGCTTTATAAAAACTTACTGCAGATATATATTTTGGTGGTGGACCTAAACTAGGGCTTATTGGCCTCACCATTGGGCCAGACCAGCAGCTACTCAAATCCTATTTTAGCAATGACCTCACTGTACATTCAGATACTCCCTCCTTTCCTTTAATTAATGTTGCTTTTGTAGAATTTTTTTGTTTCTATTCATTCGTCGTTTTCAAAGTTCAAATGCAACATTAACTATTGTTTAGTTAAGTACACTTAACTATTTAATGCAGAGAGAAATGTTTGGAATAAGGTAATAAGTAACAAAATTTATTAGAGGGTACTACTCCTGTGGAAATTTTTTGGTGTGAATTCAACCAATTTTGAAACTCTGAATCCAATAATTTCTTCCAAAATTTCAAGTAAGCTGGCTATTATGTACCTAGTGGCAGCACTGTGTACAACTTTCATGAATCTAATTGAAACTATAATATTGTTCAGAGAGTTCTTAAGCTGTGCAGTAAAGTTTAGACACTACATTCTGTTCTGGTTGATATATAATATTAGCTTTGGGCTCTCCTTGAGTATGTTTTCCTTCTTGTATTGAACTCTATTCTCAAACTAGTTTTTGGACTCTAAATACACCTAATTTACAGAAATAACAACTTTTAAGATGGAGTATGAACACTGGGTGGAAGACCTAAACAGACAAATGTTGGAATTGAAAGGTGCTTTAAGTGCTCATATCAGTGATATACAAATTGGGGAACTTGTAAATGGCCTCATGAATCACTATTTCAAACTATTTTGCATGAAATCTGATGCTGCAAAAGTAGATGTTTTCTATGTTATCACTGGCATGTGGAAAACAACAGCTGAAGGGTTTTTCTTGTGGATTGGAGGTTTTCGACCCTCCGAACTTCTAAAGGTAACACCTAATCGATATACTTGATCAACATGGGGTTATTTATTTCTGCTGTCATATTTCTACCATGGCATAATGTATGTTTGTGATGAGATTTGCAGGTTCTGGTCCCTTTAATTGAACCATTGACAGAGGAACAACGGTTTGATGCCTATAATCTTGAGAAGTCATGCCGACAAGCAGAAGATGCCCTTTCACAAGGTATGGAAAAACTACAGGGAATGCTTGTTGACACAGTTGCAGCAGGACAACTCGTTGAAGGAACTTACATTCCACAGATGGATATTGCAATAGAGAGGCTGGAAGCTCTGGCTAGCTTTGTGAACCAGGTAATGTATGTTATATATTTCTTCGTATAATTTAGATTAGATGAGGTTATGAGTAGTGGAAAACGTGTGACACAACAGTTATGAGTAGTGGAAAACAATGCTGATCCATGGCAGGAGTATAAGTTTTATCAGAAGTATGCATGGCAAGAGTATATTCCATTAACACACAAATTACCAAATTAAAAAGGTTAAACTAGGCTACTAGAAAATTGAACCAATTAAGTTTATTATTGTCAAACAGGCTGATCATCTTCGACAGGAAACGTTGCAACAGATGTCTCGAATACTTACCGTACGTCAAACTGCTCGATGGCTGCTTGCTTTGGGTGAATACTTTCAACGCCTAAGGGATTTGAGCAAACTTTGGACCAATCGTCCTCGTGAACCTGCATAG

Protein sequence

>MS.gene030746.t1

SEDASFGILGTSIKYDHQEANTVTNKMQRRLAQNREAARKSRLKKKAHIQQLESCRLKLLQVEQELDHTKQGLYIGGGLDSNNLGFAGSVNSEITTFKMEYEHWVEDLNRQMLELKGALSAHISDIQIGELVNGLMNHYFKLFCMKSDAAKVDVFYVITGMWKTTAEGFFLWIGGFRPSELLKVLVPLIEPLTEEQRFDAYNLEKSCRQAEDALSQGMEKLQGMLVDTVAAGQLVEGTYIPQMDIAIERLEALASFVNQADHLRQETLQQMSRILTVRQTARWLLALGEYFQRLRDLSKLWTNRPREPA