Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030748.t1 | XP_003630093.1 | 98.4 | 309 | 5 | 0 | 1 | 309 | 50 | 358 | 4.80E-167 | 597 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030748.t1 | Q39162 | 65.6 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 5.3e-106 | 385.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030748.t1 | G7LB89 | 98.4 | 309 | 5 | 0 | 1 | 309 | 50 | 358 | 3.5e-167 | 597.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene030748.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030748.t1 | MTR_8g091650 | 98.382 | 309 | 5 | 0 | 1 | 309 | 50 | 358 | 0.0 | 631 |
| MS.gene030748.t1 | MTR_8g091650 | 88.116 | 345 | 5 | 1 | 1 | 309 | 50 | 394 | 0.0 | 612 |
| MS.gene030748.t1 | MTR_8g091650 | 98.239 | 284 | 5 | 0 | 26 | 309 | 2 | 285 | 0.0 | 579 |
| MS.gene030748.t1 | MTR_3g087940 | 71.935 | 310 | 85 | 2 | 1 | 309 | 55 | 363 | 2.31e-165 | 464 |
| MS.gene030748.t1 | MTR_8g040120 | 52.234 | 291 | 125 | 4 | 26 | 307 | 181 | 466 | 2.52e-94 | 287 |
| MS.gene030748.t1 | MTR_3g073560 | 50.853 | 293 | 141 | 2 | 16 | 305 | 53 | 345 | 6.11e-94 | 290 |
| MS.gene030748.t1 | MTR_7g089800 | 51.546 | 291 | 127 | 4 | 26 | 307 | 138 | 423 | 7.86e-94 | 285 |
| MS.gene030748.t1 | MTR_5g060950 | 51.034 | 290 | 141 | 1 | 16 | 304 | 57 | 346 | 1.25e-93 | 282 |
| MS.gene030748.t1 | MTR_7g089800 | 51.546 | 291 | 127 | 4 | 26 | 307 | 167 | 452 | 1.72e-93 | 285 |
| MS.gene030748.t1 | MTR_2g086420 | 50.526 | 285 | 129 | 4 | 26 | 307 | 193 | 468 | 2.68e-90 | 278 |
| MS.gene030748.t1 | MTR_2g086420 | 50.526 | 285 | 129 | 4 | 26 | 307 | 194 | 469 | 2.78e-90 | 278 |
| MS.gene030748.t1 | MTR_7g092750 | 45.425 | 306 | 159 | 3 | 10 | 307 | 57 | 362 | 2.08e-89 | 271 |
| MS.gene030748.t1 | MTR_5g054900 | 48.797 | 291 | 137 | 3 | 25 | 307 | 67 | 353 | 2.59e-88 | 268 |
| MS.gene030748.t1 | MTR_7g092750 | 45.425 | 306 | 159 | 3 | 10 | 307 | 158 | 463 | 2.71e-88 | 271 |
| MS.gene030748.t1 | MTR_5g054900 | 48.621 | 290 | 135 | 3 | 25 | 307 | 67 | 349 | 1.45e-87 | 266 |
| MS.gene030748.t1 | MTR_5g054900 | 48.797 | 291 | 137 | 3 | 25 | 307 | 148 | 434 | 3.10e-87 | 268 |
| MS.gene030748.t1 | MTR_5g054900 | 48.621 | 290 | 135 | 3 | 25 | 307 | 178 | 460 | 3.83e-86 | 266 |
| MS.gene030748.t1 | MTR_4g053250 | 47.735 | 287 | 139 | 3 | 22 | 307 | 185 | 461 | 5.67e-85 | 264 |
| MS.gene030748.t1 | MTR_1g111310 | 44.828 | 290 | 151 | 4 | 25 | 307 | 420 | 707 | 9.58e-78 | 251 |
| MS.gene030748.t1 | MTR_1g111310 | 44.681 | 282 | 143 | 4 | 25 | 301 | 53 | 326 | 7.92e-69 | 227 |
| MS.gene030748.t1 | MTR_7g092750 | 41.503 | 306 | 145 | 4 | 10 | 307 | 158 | 437 | 4.33e-74 | 234 |
| MS.gene030748.t1 | MTR_0126s0080 | 43.462 | 260 | 138 | 4 | 10 | 260 | 200 | 459 | 1.10e-63 | 208 |
| MS.gene030748.t1 | MTR_3g044820 | 44.848 | 165 | 83 | 4 | 25 | 181 | 44 | 208 | 1.53e-40 | 140 |
| MS.gene030748.t1 | MTR_1g090370 | 33.040 | 227 | 126 | 6 | 80 | 300 | 22 | 228 | 2.22e-30 | 114 |
| MS.gene030748.t1 | MTR_8g094690 | 25.806 | 248 | 149 | 5 | 84 | 296 | 2 | 249 | 1.17e-13 | 70.1 |
| MS.gene030748.t1 | MTR_1g111320 | 53.333 | 60 | 27 | 1 | 25 | 83 | 145 | 204 | 4.86e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030748.t1 | AT5G10030 | 65.595 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 3.38e-144 | 410 |
| MS.gene030748.t1 | AT5G10030 | 65.595 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 3.38e-144 | 410 |
| MS.gene030748.t1 | AT5G10030 | 65.595 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 3.38e-144 | 410 |
| MS.gene030748.t1 | AT5G10030 | 65.595 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 3.38e-144 | 410 |
| MS.gene030748.t1 | AT5G10030 | 65.595 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 3.38e-144 | 410 |
| MS.gene030748.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
| MS.gene030748.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
| MS.gene030748.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
| MS.gene030748.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
| MS.gene030748.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
| MS.gene030748.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
| MS.gene030748.t1 | AT5G65210 | 65.646 | 294 | 98 | 2 | 18 | 308 | 4 | 297 | 1.55e-139 | 396 |
| MS.gene030748.t1 | AT1G22070 | 58.305 | 295 | 120 | 3 | 16 | 307 | 88 | 382 | 5.03e-118 | 345 |
| MS.gene030748.t1 | AT1G77920 | 57.840 | 287 | 111 | 2 | 23 | 308 | 90 | 367 | 1.05e-117 | 343 |
| MS.gene030748.t1 | AT5G06950 | 52.759 | 290 | 124 | 4 | 26 | 307 | 46 | 330 | 1.95e-93 | 280 |
| MS.gene030748.t1 | AT5G06950 | 52.759 | 290 | 124 | 4 | 26 | 307 | 46 | 330 | 1.95e-93 | 280 |
| MS.gene030748.t1 | AT5G06950 | 52.759 | 290 | 124 | 4 | 26 | 307 | 46 | 330 | 1.95e-93 | 280 |
| MS.gene030748.t1 | AT5G06950 | 52.759 | 290 | 124 | 4 | 26 | 307 | 46 | 330 | 1.95e-93 | 280 |
| MS.gene030748.t1 | AT5G06950 | 52.759 | 290 | 124 | 4 | 26 | 307 | 46 | 330 | 1.95e-93 | 280 |
| MS.gene030748.t1 | AT1G08320 | 50.704 | 284 | 130 | 4 | 26 | 307 | 54 | 329 | 2.13e-93 | 281 |
| MS.gene030748.t1 | AT1G08320 | 50.704 | 284 | 130 | 4 | 26 | 307 | 54 | 329 | 2.13e-93 | 281 |
| MS.gene030748.t1 | AT1G08320 | 50.704 | 284 | 130 | 4 | 26 | 307 | 178 | 453 | 1.04e-91 | 281 |
| MS.gene030748.t1 | AT1G08320 | 50.704 | 284 | 130 | 4 | 26 | 307 | 178 | 453 | 1.04e-91 | 281 |
| MS.gene030748.t1 | AT1G08320 | 50.704 | 284 | 130 | 4 | 26 | 307 | 178 | 453 | 1.04e-91 | 281 |
| MS.gene030748.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 14 | 303 | 1.53e-91 | 275 |
| MS.gene030748.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 41 | 330 | 3.02e-91 | 275 |
| MS.gene030748.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 41 | 330 | 3.02e-91 | 275 |
| MS.gene030748.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 41 | 330 | 3.02e-91 | 275 |
| MS.gene030748.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 41 | 330 | 3.02e-91 | 275 |
| MS.gene030748.t1 | AT3G12250 | 48.589 | 319 | 143 | 5 | 5 | 307 | 42 | 355 | 6.33e-91 | 275 |
| MS.gene030748.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 35 | 324 | 6.64e-91 | 274 |
| MS.gene030748.t1 | AT5G06960 | 50.865 | 289 | 131 | 3 | 26 | 307 | 26 | 310 | 4.45e-90 | 271 |
| MS.gene030748.t1 | AT5G06960 | 50.865 | 289 | 131 | 3 | 26 | 307 | 46 | 330 | 5.81e-90 | 271 |
| MS.gene030748.t1 | AT5G06960 | 50.865 | 289 | 131 | 3 | 26 | 307 | 46 | 330 | 5.81e-90 | 271 |
| MS.gene030748.t1 | AT5G06839 | 45.779 | 308 | 151 | 4 | 16 | 307 | 108 | 415 | 1.19e-85 | 263 |
| MS.gene030748.t1 | AT5G06839 | 45.779 | 308 | 151 | 4 | 16 | 307 | 151 | 458 | 1.76e-85 | 264 |
| MS.gene030748.t1 | AT5G06839 | 45.631 | 309 | 151 | 5 | 16 | 307 | 108 | 416 | 8.54e-84 | 259 |
| MS.gene030748.t1 | AT1G68640 | 43.182 | 308 | 166 | 3 | 7 | 307 | 147 | 452 | 3.65e-75 | 238 |
| MS.gene030748.t1 | AT1G58330 | 26.906 | 223 | 146 | 6 | 90 | 297 | 3 | 223 | 1.38e-14 | 72.0 |
Find 0 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAACAAAATTTATTAGA+GGG | - | 57602:5867-5886 | MS.gene030748:intron | 15.0% |
| !! | TAAGTAACAAAATTTATTAG+AGG | - | 57602:5866-5885 | MS.gene030748:intron | 15.0% |
| !! | TTGACAATAATAAACTTAAT+TGG | + | 57602:7020-7039 | None:intergenic | 15.0% |
| !!! | TAAGTTTTTATAAAGCAAAA+AGG | + | 57602:5578-5597 | None:intergenic | 15.0% |
| !!! | TGATATATAATATTAGCTTT+GGG | - | 57602:6100-6119 | MS.gene030748:intron | 15.0% |
| !!! | TTGATATATAATATTAGCTT+TGG | - | 57602:6099-6118 | MS.gene030748:intron | 15.0% |
| !! | AATATATAACATACATTACC+TGG | + | 57602:6802-6821 | None:intergenic | 20.0% |
| !! | ACAAAAGCAACATTAATTAA+AGG | + | 57602:5729-5748 | None:intergenic | 20.0% |
| !! | ATATCAGTGATATACAAATT+GGG | - | 57602:6292-6311 | MS.gene030748:intron | 20.0% |
| !! | CAAATTAAAAAGGTTAAACT+AGG | - | 57602:6978-6997 | MS.gene030748:intron | 20.0% |
| !! | CACAAATTACCAAATTAAAA+AGG | - | 57602:6968-6987 | MS.gene030748:intron | 20.0% |
| !! | CCTTTAACAAAATTTCAAAA+TGG | + | 57602:4734-4753 | None:intergenic | 20.0% |
| !! | TAAGTTTATTATTGTCAAAC+AGG | - | 57602:7022-7041 | MS.gene030748:intron | 20.0% |
| !!! | AAACTTTGAGAAAATTCTTT+AGG | - | 57602:5516-5535 | MS.gene030748:intron | 20.0% |
| !!! | AGAAATAACAACTTTTAAGA+TGG | - | 57602:6203-6222 | MS.gene030748:CDS | 20.0% |
| !!! | AGTTGTTATTTCTGTAAATT+AGG | + | 57602:6196-6215 | None:intergenic | 20.0% |
| !!! | CCATTTTGAAATTTTGTTAA+AGG | - | 57602:4731-4750 | MS.gene030748:intron | 20.0% |
| !!! | CTAGTTTAACCTTTTTAATT+TGG | + | 57602:6980-6999 | None:intergenic | 20.0% |
| !!! | GAAATTTTGGAAGAAATTAT+TGG | + | 57602:5949-5968 | None:intergenic | 20.0% |
| ! | AACATTAATTAAAGGAAAGG+AGG | + | 57602:5721-5740 | None:intergenic | 25.0% |
| ! | ACATTAATTAAAGGAAAGGA+GGG | + | 57602:5720-5739 | None:intergenic | 25.0% |
| ! | AGCAACATTAATTAAAGGAA+AGG | + | 57602:5724-5743 | None:intergenic | 25.0% |
| ! | CAAAAAAGTGATTTCATCAT+AGG | + | 57602:5421-5440 | None:intergenic | 25.0% |
| ! | CATATCAGTGATATACAAAT+TGG | - | 57602:6291-6310 | MS.gene030748:intron | 25.0% |
| ! | CGTATAATTTAGATTAGATG+AGG | - | 57602:6826-6845 | MS.gene030748:intron | 25.0% |
| ! | GATATTGAACAATATGAAGT+AGG | + | 57602:5217-5236 | None:intergenic | 25.0% |
| ! | GGATTGGATTCTAATAATTT+AGG | - | 57602:5307-5326 | MS.gene030748:CDS | 25.0% |
| ! | TATCAGTGATATACAAATTG+GGG | - | 57602:6293-6312 | MS.gene030748:intron | 25.0% |
| !! | CTTACTGCAGATATATATTT+TGG | - | 57602:5594-5613 | MS.gene030748:intron | 25.0% |
| !! | TCAATCACATTAATCCATTT+TGG | - | 57602:4655-4674 | MS.gene030748:intron | 25.0% |
| !! | TTTGGTAATTTGTGTGTTAA+TGG | + | 57602:6962-6981 | None:intergenic | 25.0% |
| !!! | GTTGGTTTGTTATTAAATTC+TGG | - | 57602:5353-5372 | MS.gene030748:intron | 25.0% |
| !!! | TCTAATAATTTAGGTTTTGC+TGG | - | 57602:5316-5335 | MS.gene030748:CDS | 25.0% |
| !!! | TCTATTCTCAAACTAGTTTT+TGG | - | 57602:6158-6177 | MS.gene030748:intron | 25.0% |
| !!! | TGCGTTTTTTTATGCTTATA+AGG | - | 57602:4936-4955 | MS.gene030748:CDS | 25.0% |
| !!! | TGTATGGACTATTTTTTACA+CGG | - | 57602:4576-4595 | MS.gene030748:intron | 25.0% |
| AAATTGCAGGGATTGTATAT+TGG | - | 57602:5280-5299 | MS.gene030748:CDS | 30.0% | |
| AACCTACAAAATCAACTACA+AGG | - | 57602:5485-5504 | MS.gene030748:intron | 30.0% | |
| ACCTACAAAATCAACTACAA+GGG | - | 57602:5486-5505 | MS.gene030748:intron | 30.0% | |
| AGACAAATGTTGGAATTGAA+AGG | - | 57602:6255-6274 | MS.gene030748:intron | 30.0% | |
| AGCTAACACAGTTACTAATA+AGG | - | 57602:4406-4425 | MS.gene030748:CDS | 30.0% | |
| ATCGATATACTTGATCAACA+TGG | - | 57602:6487-6506 | MS.gene030748:intron | 30.0% | |
| ATTCCAACATTTGTCTGTTT+AGG | + | 57602:6251-6270 | None:intergenic | 30.0% | |
| ATTGCTCAATCAGTATTTCA+TGG | - | 57602:4760-4779 | MS.gene030748:CDS | 30.0% | |
| CTAAGTTTCTACAAAGTTTG+AGG | + | 57602:4821-4840 | None:intergenic | 30.0% | |
| CTGTCAATGGTTCAATTAAA+GGG | + | 57602:6586-6605 | None:intergenic | 30.0% | |
| GAATAGAGTTCAATACAAGA+AGG | + | 57602:6145-6164 | None:intergenic | 30.0% | |
| GAATCAAATGCTTGTTTGTT+TGG | + | 57602:5073-5092 | None:intergenic | 30.0% | |
| TAAGAGTCGTTTGAAGAAAA+AGG | - | 57602:5012-5031 | MS.gene030748:intron | 30.0% | |
| TCCATACATGTTTGATATGA+CGG | + | 57602:4564-4583 | None:intergenic | 30.0% | |
| TCGATATACTTGATCAACAT+GGG | - | 57602:6488-6507 | MS.gene030748:intron | 30.0% | |
| TCTGTCAATGGTTCAATTAA+AGG | + | 57602:6587-6606 | None:intergenic | 30.0% | |
| TGGATTCAGAGTTTCAAAAT+TGG | + | 57602:5929-5948 | None:intergenic | 30.0% | |
| TTAATGCAGAGAGAAATGTT+TGG | - | 57602:5833-5852 | MS.gene030748:intron | 30.0% | |
| TTGAACTTAACATTGCACAT+GGG | + | 57602:4605-4624 | None:intergenic | 30.0% | |
| TTTAATTGAACCATTGACAG+AGG | - | 57602:6586-6605 | MS.gene030748:intron | 30.0% | |
| ! | AGAGAGAAATGTTTGGAATA+AGG | - | 57602:5840-5859 | MS.gene030748:intron | 30.0% |
| ! | GATGTTTTCTATGTTATCAC+TGG | - | 57602:6384-6403 | MS.gene030748:CDS | 30.0% |
| ! | GTTGATCAAGTATATCGATT+AGG | + | 57602:6486-6505 | None:intergenic | 30.0% |
| ! | GTTTGAAATAGTGATTCATG+AGG | + | 57602:6332-6351 | None:intergenic | 30.0% |
| ! | TGGGTTGAACAAAATTAATG+TGG | + | 57602:4541-4560 | None:intergenic | 30.0% |
| ! | TTCCAAAATTTCAAGTAAGC+TGG | - | 57602:5957-5976 | MS.gene030748:intron | 30.0% |
| ! | TTTTTCCATACCTTGTGAAA+GGG | + | 57602:6666-6685 | None:intergenic | 30.0% |
| !! | ACTGCAGATATATATTTTGG+TGG | - | 57602:5597-5616 | MS.gene030748:intron | 30.0% |
| !! | AGTTTTATCAGAAGTATGCA+TGG | - | 57602:6924-6943 | MS.gene030748:intron | 30.0% |
| !!! | AGCATTTTAGAACCACATTT+TGG | - | 57602:4854-4873 | MS.gene030748:CDS | 30.0% |
| !!! | GATGCTTCTTTTGGAATATT+GGG | - | 57602:4356-4375 | MS.gene030748:CDS | 30.0% |
| !!! | GTATGGACTATTTTTTACAC+GGG | - | 57602:4577-4596 | MS.gene030748:intron | 30.0% |
| !!! | TATGGACTATTTTTTACACG+GGG | - | 57602:4578-4597 | MS.gene030748:intron | 30.0% |
| AAAAGGACATGCATGCAAAA+AGG | + | 57602:5561-5580 | None:intergenic | 35.0% | |
| AAAAGTCGACCAATCTGAAA+GGG | - | 57602:4678-4697 | MS.gene030748:intron | 35.0% | |
| ACAAGGTATGGAAAAACTAC+AGG | - | 57602:6670-6689 | MS.gene030748:intron | 35.0% | |
| ACATCCAAAATTTGGAAGCA+GGG | + | 57602:4910-4929 | None:intergenic | 35.0% | |
| ACCGTCATATCAAACATGTA+TGG | - | 57602:4560-4579 | MS.gene030748:intron | 35.0% | |
| AGACCTAAACAGACAAATGT+TGG | - | 57602:6245-6264 | MS.gene030748:intron | 35.0% | |
| AGAGCTAGATCATACAAAAC+AGG | - | 57602:5163-5182 | MS.gene030748:CDS | 35.0% | |
| AGATGGATATTGCAATAGAG+AGG | - | 57602:6750-6769 | MS.gene030748:intron | 35.0% | |
| AGTGAGGTCATTGCTAAAAT+AGG | + | 57602:5682-5701 | None:intergenic | 35.0% | |
| ATACATGTTTGATATGACGG+TGG | + | 57602:4561-4580 | None:intergenic | 35.0% | |
| ATGTTTGTGATGAGATTTGC+AGG | - | 57602:6553-6572 | MS.gene030748:CDS | 35.0% | |
| CAAATTGGGGAACTTGTAAA+TGG | - | 57602:6306-6325 | MS.gene030748:intron | 35.0% | |
| CAAGAAGGAAAACATACTCA+AGG | + | 57602:6130-6149 | None:intergenic | 35.0% | |
| CAAGGTATGGAAAAACTACA+GGG | - | 57602:6671-6690 | MS.gene030748:intron | 35.0% | |
| CACAAACATACATTATGCCA+TGG | + | 57602:6542-6561 | None:intergenic | 35.0% | |
| CATCAAGAGATTGACAAATG+AGG | + | 57602:5255-5274 | None:intergenic | 35.0% | |
| CGATATACTTGATCAACATG+GGG | - | 57602:6489-6508 | MS.gene030748:intron | 35.0% | |
| CTTGATGCAACAAAATTGCA+GGG | - | 57602:5268-5287 | MS.gene030748:CDS | 35.0% | |
| GCATGACTTCTCAAGATTAT+AGG | + | 57602:6627-6646 | None:intergenic | 35.0% | |
| GTCGTTTGAAGAAAAAGGTT+TGG | - | 57602:5017-5036 | MS.gene030748:intron | 35.0% | |
| GTTGAACTTAACATTGCACA+TGG | + | 57602:4606-4625 | None:intergenic | 35.0% | |
| TAAAACTTATACTCCTGCCA+TGG | + | 57602:6911-6930 | None:intergenic | 35.0% | |
| TAAGATGGAGTATGAACACT+GGG | - | 57602:6218-6237 | MS.gene030748:CDS | 35.0% | |
| TAAGGGATTTGAGCAAACTT+TGG | - | 57602:7147-7166 | MS.gene030748:CDS | 35.0% | |
| TACATGTTTGATATGACGGT+GGG | + | 57602:4560-4579 | None:intergenic | 35.0% | |
| TCACACCAAAAAATTTCCAC+AGG | + | 57602:5900-5919 | None:intergenic | 35.0% | |
| TCTATTGCAATATCCATCTG+TGG | + | 57602:6749-6768 | None:intergenic | 35.0% | |
| TCTTGATGCAACAAAATTGC+AGG | - | 57602:5267-5286 | MS.gene030748:CDS | 35.0% | |
| TGAATACTTTCAACGCCTAA+GGG | - | 57602:7130-7149 | MS.gene030748:CDS | 35.0% | |
| TGTCACTGCTCTTATAAATG+TGG | - | 57602:5391-5410 | MS.gene030748:intron | 35.0% | |
| TTAAGATGGAGTATGAACAC+TGG | - | 57602:6217-6236 | MS.gene030748:CDS | 35.0% | |
| TTAGACACTACATTCTGTTC+TGG | - | 57602:6076-6095 | MS.gene030748:intron | 35.0% | |
| TTAGATGAGGTTATGAGTAG+TGG | - | 57602:6839-6858 | MS.gene030748:intron | 35.0% | |
| TTGAGGCATAAGGAAAGAAT+GGG | + | 57602:4804-4823 | None:intergenic | 35.0% | |
| ! | AAAGTTTGCTCAAATCCCTT+AGG | + | 57602:7148-7167 | None:intergenic | 35.0% |
| ! | AGCCAGCTTACTTGAAATTT+TGG | + | 57602:5962-5981 | None:intergenic | 35.0% |
| ! | AGGTGTTACCTTTAGAAGTT+CGG | + | 57602:6466-6485 | None:intergenic | 35.0% |
| ! | GTTTTTCCATACCTTGTGAA+AGG | + | 57602:6667-6686 | None:intergenic | 35.0% |
| ! | TAGTAACTGTGTTAGCTTCT+TGG | + | 57602:4403-4422 | None:intergenic | 35.0% |
| ! | TCTACAAAGTTTGAGGCATA+AGG | + | 57602:4814-4833 | None:intergenic | 35.0% |
| ! | TTGTCGCTTCAACATAATCA+AGG | - | 57602:4513-4532 | MS.gene030748:intron | 35.0% |
| ! | TTTGAGGCATAAGGAAAGAA+TGG | + | 57602:4805-4824 | None:intergenic | 35.0% |
| !! | ATTGGTCGACTTTTCCAAAA+TGG | + | 57602:4672-4691 | None:intergenic | 35.0% |
| !! | ATTGTATATTGGTGGTGGAT+TGG | - | 57602:5291-5310 | MS.gene030748:CDS | 35.0% |
| !! | TCCCTTGTAGTTGATTTTGT+AGG | + | 57602:5490-5509 | None:intergenic | 35.0% |
| !!! | CTACTCCTGTGGAAATTTTT+TGG | - | 57602:5892-5911 | MS.gene030748:intron | 35.0% |
| !!! | GCAGATATATATTTTGGTGG+TGG | - | 57602:5600-5619 | MS.gene030748:intron | 35.0% |
| !!! | GGATGCTTCTTTTGGAATAT+TGG | - | 57602:4355-4374 | MS.gene030748:CDS | 35.0% |
| AACCATTGACAGAGGAACAA+CGG | - | 57602:6594-6613 | MS.gene030748:intron | 40.0% | |
| AATAGGATTTGAGTAGCTGC+TGG | + | 57602:5665-5684 | None:intergenic | 40.0% | |
| AGGAACTTACATTCCACAGA+TGG | - | 57602:6733-6752 | MS.gene030748:intron | 40.0% | |
| ATGTGGAAAACAACAGCTGA+AGG | - | 57602:6408-6427 | MS.gene030748:CDS | 40.0% | |
| CAAGCCAGACATCCAAAATT+TGG | + | 57602:4918-4937 | None:intergenic | 40.0% | |
| CATCCAAAATTTGGAAGCAG+GGG | + | 57602:4909-4928 | None:intergenic | 40.0% | |
| GAAAAGTCGACCAATCTGAA+AGG | - | 57602:4677-4696 | MS.gene030748:intron | 40.0% | |
| GACACAACAGTTATGAGTAG+TGG | - | 57602:6871-6890 | MS.gene030748:intron | 40.0% | |
| GACATCCAAAATTTGGAAGC+AGG | + | 57602:4911-4930 | None:intergenic | 40.0% | |
| GAGTATCTGAATGTACAGTG+AGG | + | 57602:5698-5717 | None:intergenic | 40.0% | |
| GATTCCTGACGTTTCATAAC+AGG | - | 57602:5088-5107 | MS.gene030748:CDS | 40.0% | |
| GTGAATACTTTCAACGCCTA+AGG | - | 57602:7129-7148 | MS.gene030748:CDS | 40.0% | |
| TATGTTGAAGCGACAAAGTG+CGG | + | 57602:4509-4528 | None:intergenic | 40.0% | |
| TCTATGTTATCACTGGCATG+TGG | - | 57602:6391-6410 | MS.gene030748:CDS | 40.0% | |
| TGCAAAGTGAGTCCAAAATG+TGG | + | 57602:4869-4888 | None:intergenic | 40.0% | |
| TGGAAAACAATGCTGATCCA+TGG | - | 57602:6891-6910 | MS.gene030748:intron | 40.0% | |
| TGTGGAAAACAACAGCTGAA+GGG | - | 57602:6409-6428 | MS.gene030748:CDS | 40.0% | |
| TTGCAGGGATTGTATATTGG+TGG | - | 57602:5283-5302 | MS.gene030748:CDS | 40.0% | |
| ! | CTGCTGTCATATTTCTACCA+TGG | - | 57602:6522-6541 | MS.gene030748:CDS | 40.0% |
| ! | GAAGGGTTTTTCTTGTGGAT+TGG | - | 57602:6426-6445 | MS.gene030748:intron | 40.0% |
| ! | GCTTCCAAATTTTGGATGTC+TGG | - | 57602:4911-4930 | MS.gene030748:CDS | 40.0% |
| ! | GTTACCTTTAGAAGTTCGGA+GGG | + | 57602:6462-6481 | None:intergenic | 40.0% |
| ! | TAACTGTGTTAGCTTCTTGG+TGG | + | 57602:4400-4419 | None:intergenic | 40.0% |
| ! | TGTTACCTTTAGAAGTTCGG+AGG | + | 57602:6463-6482 | None:intergenic | 40.0% |
| ! | TTGCTACTTGCTTGATATCG+CGG | - | 57602:4439-4458 | MS.gene030748:CDS | 40.0% |
| !! | GTGTCGTTTAAAGCTGTTAC+AGG | - | 57602:5133-5152 | MS.gene030748:CDS | 40.0% |
| !! | TTTGCTGGCTCTGTAAATTC+AGG | - | 57602:5331-5350 | MS.gene030748:intron | 40.0% |
| AAACAATGCTGATCCATGGC+AGG | - | 57602:6895-6914 | MS.gene030748:intron | 45.0% | |
| AACCGTTGTTCCTCTGTCAA+TGG | + | 57602:6599-6618 | None:intergenic | 45.0% | |
| ACTTTGCACTGCAGATTAGG+AGG | - | 57602:4881-4900 | MS.gene030748:CDS | 45.0% | |
| AGATGCCCTTTCACAAGGTA+TGG | - | 57602:6658-6677 | MS.gene030748:intron | 45.0% | |
| AGGCCAATAAGCCCTAGTTT+AGG | + | 57602:5627-5646 | None:intergenic | 45.0% | |
| CAGGGATTGTATATTGGTGG+TGG | - | 57602:5286-5305 | MS.gene030748:CDS | 45.0% | |
| CTCACTTTGCACTGCAGATT+AGG | - | 57602:4878-4897 | MS.gene030748:CDS | 45.0% | |
| CTTTGCACTGCAGATTAGGA+GGG | - | 57602:4882-4901 | MS.gene030748:CDS | 45.0% | |
| GCTGGCTATTATGTACCTAG+TGG | - | 57602:5975-5994 | MS.gene030748:intron | 45.0% | |
| GGACCTAAACTAGGGCTTAT+TGG | - | 57602:5621-5640 | MS.gene030748:intron | 45.0% | |
| GGATATTGCAATAGAGAGGC+TGG | - | 57602:6754-6773 | MS.gene030748:intron | 45.0% | |
| GTGATGAGATTTGCAGGTTC+TGG | - | 57602:6559-6578 | MS.gene030748:intron | 45.0% | |
| TGAGCCTGTTATGAAACGTC+AGG | + | 57602:5095-5114 | None:intergenic | 45.0% | |
| ! | CAGCTGAAGGGTTTTTCTTG+TGG | - | 57602:6421-6440 | MS.gene030748:intron | 45.0% |
| !! | AAAGGGCATCTTCTGCTTGT+CGG | + | 57602:6649-6668 | None:intergenic | 45.0% |
| !! | ATTAGAGGGTACTACTCCTG+TGG | - | 57602:5881-5900 | MS.gene030748:intron | 45.0% |
| !! | CTGGCTCTGTAAATTCAGGT+TGG | - | 57602:5335-5354 | MS.gene030748:intron | 45.0% |
| !! | TTGGTGGTGGACCTAAACTA+GGG | - | 57602:5613-5632 | MS.gene030748:intron | 45.0% |
| !! | TTTGGTGGTGGACCTAAACT+AGG | - | 57602:5612-5631 | MS.gene030748:intron | 45.0% |
| !!! | GGGTTTTTCTTGTGGATTGG+AGG | - | 57602:6429-6448 | MS.gene030748:intron | 45.0% |
| AATAGAGAGGCTGGAAGCTC+TGG | - | 57602:6763-6782 | MS.gene030748:intron | 50.0% | |
| ACAGGCTGATCATCTTCGAC+AGG | - | 57602:7040-7059 | MS.gene030748:intron | 50.0% | |
| ACGTCTCGCACAAAATCGAG+AGG | - | 57602:4982-5001 | MS.gene030748:intron | 50.0% | |
| CCATCGAGCAGTTTGACGTA+CGG | + | 57602:7096-7115 | None:intergenic | 50.0% | |
| CTTGTTGACACAGTTGCAGC+AGG | - | 57602:6698-6717 | MS.gene030748:intron | 50.0% | |
| GATGGAGTATGAACACTGGG+TGG | - | 57602:6221-6240 | MS.gene030748:CDS | 50.0% | |
| GATTTGAGTAGCTGCTGGTC+TGG | + | 57602:5660-5679 | None:intergenic | 50.0% | |
| GCAGAAGATGCCCTTTCACA+AGG | - | 57602:6653-6672 | MS.gene030748:intron | 50.0% | |
| TCGACCCTCCGAACTTCTAA+AGG | - | 57602:6455-6474 | MS.gene030748:intron | 50.0% | |
| TCGCATCAGCCCTTTCAGAT+TGG | + | 57602:4690-4709 | None:intergenic | 50.0% | |
| TTGTACACAGTGCTGCCACT+AGG | + | 57602:5993-6012 | None:intergenic | 50.0% | |
| ! | GGCTTATTGGCCTCACCATT+GGG | - | 57602:5634-5653 | MS.gene030748:intron | 50.0% |
| ! | GGTCCCCTGCTTCCAAATTT+TGG | - | 57602:4903-4922 | MS.gene030748:CDS | 50.0% |
| !! | TCTGGCTAGCTTTGTGAACC+AGG | - | 57602:6781-6800 | MS.gene030748:intron | 50.0% |
| CCGTACGTCAAACTGCTCGA+TGG | - | 57602:7093-7112 | MS.gene030748:intron | 55.0% | |
| GCAGCAGGACAACTCGTTGA+AGG | - | 57602:6713-6732 | MS.gene030748:intron | 55.0% | |
| GCTCGATGGCTGCTTGCTTT+GGG | - | 57602:7107-7126 | MS.gene030748:intron | 55.0% | |
| TGCAGGTTCACGAGGACGAT+TGG | + | 57602:7174-7193 | None:intergenic | 55.0% | |
| TGCTCGATGGCTGCTTGCTT+TGG | - | 57602:7106-7125 | MS.gene030748:intron | 55.0% | |
| ! | GGGCTTATTGGCCTCACCAT+TGG | - | 57602:5633-5652 | MS.gene030748:intron | 55.0% |
| ! | TAGCTGCTGGTCTGGCCCAA+TGG | + | 57602:5652-5671 | None:intergenic | 60.0% |
| ! | GCTGGTCTGGCCCAATGGTG+AGG | + | 57602:5647-5666 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57602 | gene | 4350 | 7196 | 4350 | ID=MS.gene030748 |
| 57602 | mRNA | 4350 | 7196 | 4350 | ID=MS.gene030748.t1;Parent=MS.gene030748 |
| 57602 | exon | 7119 | 7196 | 7119 | ID=MS.gene030748.t1.exon1;Parent=MS.gene030748.t1 |
| 57602 | CDS | 7119 | 7196 | 7119 | ID=cds.MS.gene030748.t1;Parent=MS.gene030748.t1 |
| 57602 | exon | 6513 | 6572 | 6513 | ID=MS.gene030748.t1.exon2;Parent=MS.gene030748.t1 |
| 57602 | CDS | 6513 | 6572 | 6513 | ID=cds.MS.gene030748.t1;Parent=MS.gene030748.t1 |
| 57602 | exon | 6362 | 6436 | 6362 | ID=MS.gene030748.t1.exon3;Parent=MS.gene030748.t1 |
| 57602 | CDS | 6362 | 6436 | 6362 | ID=cds.MS.gene030748.t1;Parent=MS.gene030748.t1 |
| 57602 | exon | 6194 | 6257 | 6194 | ID=MS.gene030748.t1.exon4;Parent=MS.gene030748.t1 |
| 57602 | CDS | 6194 | 6257 | 6194 | ID=cds.MS.gene030748.t1;Parent=MS.gene030748.t1 |
| 57602 | exon | 5070 | 5341 | 5070 | ID=MS.gene030748.t1.exon5;Parent=MS.gene030748.t1 |
| 57602 | CDS | 5070 | 5341 | 5070 | ID=cds.MS.gene030748.t1;Parent=MS.gene030748.t1 |
| 57602 | exon | 4744 | 4971 | 4744 | ID=MS.gene030748.t1.exon6;Parent=MS.gene030748.t1 |
| 57602 | CDS | 4744 | 4971 | 4744 | ID=cds.MS.gene030748.t1;Parent=MS.gene030748.t1 |
| 57602 | exon | 4350 | 4502 | 4350 | ID=MS.gene030748.t1.exon7;Parent=MS.gene030748.t1 |
| 57602 | CDS | 4350 | 4502 | 4350 | ID=cds.MS.gene030748.t1;Parent=MS.gene030748.t1 |
| Gene Sequence |
| Protein sequence |
