Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030750.t1 | XP_003630093.1 | 98.4 | 309 | 5 | 0 | 1 | 309 | 50 | 358 | 4.80E-167 | 597 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030750.t1 | Q39162 | 65.6 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 5.3e-106 | 385.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030750.t1 | G7LB89 | 98.4 | 309 | 5 | 0 | 1 | 309 | 50 | 358 | 3.5e-167 | 597.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene030750.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030750.t1 | MTR_8g091650 | 98.382 | 309 | 5 | 0 | 1 | 309 | 50 | 358 | 0.0 | 631 |
| MS.gene030750.t1 | MTR_8g091650 | 88.116 | 345 | 5 | 1 | 1 | 309 | 50 | 394 | 0.0 | 612 |
| MS.gene030750.t1 | MTR_8g091650 | 98.239 | 284 | 5 | 0 | 26 | 309 | 2 | 285 | 0.0 | 579 |
| MS.gene030750.t1 | MTR_3g087940 | 71.935 | 310 | 85 | 2 | 1 | 309 | 55 | 363 | 2.31e-165 | 464 |
| MS.gene030750.t1 | MTR_8g040120 | 52.234 | 291 | 125 | 4 | 26 | 307 | 181 | 466 | 2.52e-94 | 287 |
| MS.gene030750.t1 | MTR_3g073560 | 50.853 | 293 | 141 | 2 | 16 | 305 | 53 | 345 | 6.11e-94 | 290 |
| MS.gene030750.t1 | MTR_7g089800 | 51.546 | 291 | 127 | 4 | 26 | 307 | 138 | 423 | 7.86e-94 | 285 |
| MS.gene030750.t1 | MTR_5g060950 | 51.034 | 290 | 141 | 1 | 16 | 304 | 57 | 346 | 1.25e-93 | 282 |
| MS.gene030750.t1 | MTR_7g089800 | 51.546 | 291 | 127 | 4 | 26 | 307 | 167 | 452 | 1.72e-93 | 285 |
| MS.gene030750.t1 | MTR_2g086420 | 50.526 | 285 | 129 | 4 | 26 | 307 | 193 | 468 | 2.68e-90 | 278 |
| MS.gene030750.t1 | MTR_2g086420 | 50.526 | 285 | 129 | 4 | 26 | 307 | 194 | 469 | 2.78e-90 | 278 |
| MS.gene030750.t1 | MTR_7g092750 | 45.425 | 306 | 159 | 3 | 10 | 307 | 57 | 362 | 2.08e-89 | 271 |
| MS.gene030750.t1 | MTR_5g054900 | 48.797 | 291 | 137 | 3 | 25 | 307 | 67 | 353 | 2.59e-88 | 268 |
| MS.gene030750.t1 | MTR_7g092750 | 45.425 | 306 | 159 | 3 | 10 | 307 | 158 | 463 | 2.71e-88 | 271 |
| MS.gene030750.t1 | MTR_5g054900 | 48.621 | 290 | 135 | 3 | 25 | 307 | 67 | 349 | 1.45e-87 | 266 |
| MS.gene030750.t1 | MTR_5g054900 | 48.797 | 291 | 137 | 3 | 25 | 307 | 148 | 434 | 3.10e-87 | 268 |
| MS.gene030750.t1 | MTR_5g054900 | 48.621 | 290 | 135 | 3 | 25 | 307 | 178 | 460 | 3.83e-86 | 266 |
| MS.gene030750.t1 | MTR_4g053250 | 47.735 | 287 | 139 | 3 | 22 | 307 | 185 | 461 | 5.67e-85 | 264 |
| MS.gene030750.t1 | MTR_1g111310 | 44.828 | 290 | 151 | 4 | 25 | 307 | 420 | 707 | 9.58e-78 | 251 |
| MS.gene030750.t1 | MTR_1g111310 | 44.681 | 282 | 143 | 4 | 25 | 301 | 53 | 326 | 7.92e-69 | 227 |
| MS.gene030750.t1 | MTR_7g092750 | 41.503 | 306 | 145 | 4 | 10 | 307 | 158 | 437 | 4.33e-74 | 234 |
| MS.gene030750.t1 | MTR_0126s0080 | 43.462 | 260 | 138 | 4 | 10 | 260 | 200 | 459 | 1.10e-63 | 208 |
| MS.gene030750.t1 | MTR_3g044820 | 44.848 | 165 | 83 | 4 | 25 | 181 | 44 | 208 | 1.53e-40 | 140 |
| MS.gene030750.t1 | MTR_1g090370 | 33.040 | 227 | 126 | 6 | 80 | 300 | 22 | 228 | 2.22e-30 | 114 |
| MS.gene030750.t1 | MTR_8g094690 | 25.806 | 248 | 149 | 5 | 84 | 296 | 2 | 249 | 1.17e-13 | 70.1 |
| MS.gene030750.t1 | MTR_1g111320 | 53.333 | 60 | 27 | 1 | 25 | 83 | 145 | 204 | 4.86e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030750.t1 | AT5G10030 | 65.595 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 3.38e-144 | 410 |
| MS.gene030750.t1 | AT5G10030 | 65.595 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 3.38e-144 | 410 |
| MS.gene030750.t1 | AT5G10030 | 65.595 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 3.38e-144 | 410 |
| MS.gene030750.t1 | AT5G10030 | 65.595 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 3.38e-144 | 410 |
| MS.gene030750.t1 | AT5G10030 | 65.595 | 311 | 103 | 3 | 1 | 308 | 54 | 363 | 3.38e-144 | 410 |
| MS.gene030750.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
| MS.gene030750.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
| MS.gene030750.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
| MS.gene030750.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
| MS.gene030750.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
| MS.gene030750.t1 | AT5G65210 | 64.630 | 311 | 106 | 3 | 1 | 308 | 58 | 367 | 1.20e-142 | 407 |
| MS.gene030750.t1 | AT5G65210 | 65.646 | 294 | 98 | 2 | 18 | 308 | 4 | 297 | 1.55e-139 | 396 |
| MS.gene030750.t1 | AT1G22070 | 58.305 | 295 | 120 | 3 | 16 | 307 | 88 | 382 | 5.03e-118 | 345 |
| MS.gene030750.t1 | AT1G77920 | 57.840 | 287 | 111 | 2 | 23 | 308 | 90 | 367 | 1.05e-117 | 343 |
| MS.gene030750.t1 | AT5G06950 | 52.759 | 290 | 124 | 4 | 26 | 307 | 46 | 330 | 1.95e-93 | 280 |
| MS.gene030750.t1 | AT5G06950 | 52.759 | 290 | 124 | 4 | 26 | 307 | 46 | 330 | 1.95e-93 | 280 |
| MS.gene030750.t1 | AT5G06950 | 52.759 | 290 | 124 | 4 | 26 | 307 | 46 | 330 | 1.95e-93 | 280 |
| MS.gene030750.t1 | AT5G06950 | 52.759 | 290 | 124 | 4 | 26 | 307 | 46 | 330 | 1.95e-93 | 280 |
| MS.gene030750.t1 | AT5G06950 | 52.759 | 290 | 124 | 4 | 26 | 307 | 46 | 330 | 1.95e-93 | 280 |
| MS.gene030750.t1 | AT1G08320 | 50.704 | 284 | 130 | 4 | 26 | 307 | 54 | 329 | 2.13e-93 | 281 |
| MS.gene030750.t1 | AT1G08320 | 50.704 | 284 | 130 | 4 | 26 | 307 | 54 | 329 | 2.13e-93 | 281 |
| MS.gene030750.t1 | AT1G08320 | 50.704 | 284 | 130 | 4 | 26 | 307 | 178 | 453 | 1.04e-91 | 281 |
| MS.gene030750.t1 | AT1G08320 | 50.704 | 284 | 130 | 4 | 26 | 307 | 178 | 453 | 1.04e-91 | 281 |
| MS.gene030750.t1 | AT1G08320 | 50.704 | 284 | 130 | 4 | 26 | 307 | 178 | 453 | 1.04e-91 | 281 |
| MS.gene030750.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 14 | 303 | 1.53e-91 | 275 |
| MS.gene030750.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 41 | 330 | 3.02e-91 | 275 |
| MS.gene030750.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 41 | 330 | 3.02e-91 | 275 |
| MS.gene030750.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 41 | 330 | 3.02e-91 | 275 |
| MS.gene030750.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 41 | 330 | 3.02e-91 | 275 |
| MS.gene030750.t1 | AT3G12250 | 48.589 | 319 | 143 | 5 | 5 | 307 | 42 | 355 | 6.33e-91 | 275 |
| MS.gene030750.t1 | AT3G12250 | 51.186 | 295 | 131 | 4 | 21 | 307 | 35 | 324 | 6.64e-91 | 274 |
| MS.gene030750.t1 | AT5G06960 | 50.865 | 289 | 131 | 3 | 26 | 307 | 26 | 310 | 4.45e-90 | 271 |
| MS.gene030750.t1 | AT5G06960 | 50.865 | 289 | 131 | 3 | 26 | 307 | 46 | 330 | 5.81e-90 | 271 |
| MS.gene030750.t1 | AT5G06960 | 50.865 | 289 | 131 | 3 | 26 | 307 | 46 | 330 | 5.81e-90 | 271 |
| MS.gene030750.t1 | AT5G06839 | 45.779 | 308 | 151 | 4 | 16 | 307 | 108 | 415 | 1.19e-85 | 263 |
| MS.gene030750.t1 | AT5G06839 | 45.779 | 308 | 151 | 4 | 16 | 307 | 151 | 458 | 1.76e-85 | 264 |
| MS.gene030750.t1 | AT5G06839 | 45.631 | 309 | 151 | 5 | 16 | 307 | 108 | 416 | 8.54e-84 | 259 |
| MS.gene030750.t1 | AT1G68640 | 43.182 | 308 | 166 | 3 | 7 | 307 | 147 | 452 | 3.65e-75 | 238 |
| MS.gene030750.t1 | AT1G58330 | 26.906 | 223 | 146 | 6 | 90 | 297 | 3 | 223 | 1.38e-14 | 72.0 |
Find 0 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAACAAAATTTATTAGA+GGG | - | 57601:4344-4363 | MS.gene030750:intron | 15.0% |
| !! | TAAGTAACAAAATTTATTAG+AGG | - | 57601:4343-4362 | MS.gene030750:intron | 15.0% |
| !! | TTGACAATAATAAACTTAAT+TGG | + | 57601:5497-5516 | None:intergenic | 15.0% |
| !!! | TAAGTTTTTATAAAGCAAAA+AGG | + | 57601:4055-4074 | None:intergenic | 15.0% |
| !!! | TGATATATAATATTAGCTTT+GGG | - | 57601:4577-4596 | MS.gene030750:intron | 15.0% |
| !!! | TTGATATATAATATTAGCTT+TGG | - | 57601:4576-4595 | MS.gene030750:intron | 15.0% |
| !! | AATATATAACATACATTACC+TGG | + | 57601:5279-5298 | None:intergenic | 20.0% |
| !! | ACAAAAGCAACATTAATTAA+AGG | + | 57601:4206-4225 | None:intergenic | 20.0% |
| !! | ATATCAGTGATATACAAATT+GGG | - | 57601:4769-4788 | MS.gene030750:intron | 20.0% |
| !! | CAAATTAAAAAGGTTAAACT+AGG | - | 57601:5455-5474 | MS.gene030750:intron | 20.0% |
| !! | CACAAATTACCAAATTAAAA+AGG | - | 57601:5445-5464 | MS.gene030750:intron | 20.0% |
| !! | CCTTTAACAAAATTTCAAAA+TGG | + | 57601:3211-3230 | None:intergenic | 20.0% |
| !! | TAAGTTTATTATTGTCAAAC+AGG | - | 57601:5499-5518 | MS.gene030750:intron | 20.0% |
| !!! | AAACTTTGAGAAAATTCTTT+AGG | - | 57601:3993-4012 | MS.gene030750:intron | 20.0% |
| !!! | AGAAATAACAACTTTTAAGA+TGG | - | 57601:4680-4699 | MS.gene030750:CDS | 20.0% |
| !!! | AGTTGTTATTTCTGTAAATT+AGG | + | 57601:4673-4692 | None:intergenic | 20.0% |
| !!! | CCATTTTGAAATTTTGTTAA+AGG | - | 57601:3208-3227 | MS.gene030750:intron | 20.0% |
| !!! | CTAGTTTAACCTTTTTAATT+TGG | + | 57601:5457-5476 | None:intergenic | 20.0% |
| !!! | GAAATTTTGGAAGAAATTAT+TGG | + | 57601:4426-4445 | None:intergenic | 20.0% |
| ! | AACATTAATTAAAGGAAAGG+AGG | + | 57601:4198-4217 | None:intergenic | 25.0% |
| ! | ACATTAATTAAAGGAAAGGA+GGG | + | 57601:4197-4216 | None:intergenic | 25.0% |
| ! | AGCAACATTAATTAAAGGAA+AGG | + | 57601:4201-4220 | None:intergenic | 25.0% |
| ! | CAAAAAAGTGATTTCATCAT+AGG | + | 57601:3898-3917 | None:intergenic | 25.0% |
| ! | CATATCAGTGATATACAAAT+TGG | - | 57601:4768-4787 | MS.gene030750:intron | 25.0% |
| ! | CGTATAATTTAGATTAGATG+AGG | - | 57601:5303-5322 | MS.gene030750:intron | 25.0% |
| ! | GATATTGAACAATATGAAGT+AGG | + | 57601:3694-3713 | None:intergenic | 25.0% |
| ! | GGATTGGATTCTAATAATTT+AGG | - | 57601:3784-3803 | MS.gene030750:CDS | 25.0% |
| ! | TATCAGTGATATACAAATTG+GGG | - | 57601:4770-4789 | MS.gene030750:intron | 25.0% |
| !! | CTTACTGCAGATATATATTT+TGG | - | 57601:4071-4090 | MS.gene030750:intron | 25.0% |
| !! | TCAATCACATTAATCCATTT+TGG | - | 57601:3132-3151 | MS.gene030750:intron | 25.0% |
| !! | TTTGGTAATTTGTGTGTTAA+TGG | + | 57601:5439-5458 | None:intergenic | 25.0% |
| !!! | GTTGGTTTGTTATTAAATTC+TGG | - | 57601:3830-3849 | MS.gene030750:intron | 25.0% |
| !!! | TCTAATAATTTAGGTTTTGC+TGG | - | 57601:3793-3812 | MS.gene030750:CDS | 25.0% |
| !!! | TCTATTCTCAAACTAGTTTT+TGG | - | 57601:4635-4654 | MS.gene030750:intron | 25.0% |
| !!! | TGCGTTTTTTTATGCTTATA+AGG | - | 57601:3413-3432 | MS.gene030750:CDS | 25.0% |
| !!! | TGTATGGACTATTTTTTACA+CGG | - | 57601:3053-3072 | MS.gene030750:intron | 25.0% |
| AAATTGCAGGGATTGTATAT+TGG | - | 57601:3757-3776 | MS.gene030750:CDS | 30.0% | |
| AACCTACAAAATCAACTACA+AGG | - | 57601:3962-3981 | MS.gene030750:intron | 30.0% | |
| ACCTACAAAATCAACTACAA+GGG | - | 57601:3963-3982 | MS.gene030750:intron | 30.0% | |
| AGACAAATGTTGGAATTGAA+AGG | - | 57601:4732-4751 | MS.gene030750:intron | 30.0% | |
| AGCTAACACAGTTACTAATA+AGG | - | 57601:2883-2902 | MS.gene030750:CDS | 30.0% | |
| ATCGATATACTTGATCAACA+TGG | - | 57601:4964-4983 | MS.gene030750:intron | 30.0% | |
| ATTCCAACATTTGTCTGTTT+AGG | + | 57601:4728-4747 | None:intergenic | 30.0% | |
| ATTGCTCAATCAGTATTTCA+TGG | - | 57601:3237-3256 | MS.gene030750:CDS | 30.0% | |
| CTAAGTTTCTACAAAGTTTG+AGG | + | 57601:3298-3317 | None:intergenic | 30.0% | |
| CTGTCAATGGTTCAATTAAA+GGG | + | 57601:5063-5082 | None:intergenic | 30.0% | |
| GAATAGAGTTCAATACAAGA+AGG | + | 57601:4622-4641 | None:intergenic | 30.0% | |
| GAATCAAATGCTTGTTTGTT+TGG | + | 57601:3550-3569 | None:intergenic | 30.0% | |
| TAAGAGTCGTTTGAAGAAAA+AGG | - | 57601:3489-3508 | MS.gene030750:intron | 30.0% | |
| TCCATACATGTTTGATATGA+CGG | + | 57601:3041-3060 | None:intergenic | 30.0% | |
| TCGATATACTTGATCAACAT+GGG | - | 57601:4965-4984 | MS.gene030750:intron | 30.0% | |
| TCTGTCAATGGTTCAATTAA+AGG | + | 57601:5064-5083 | None:intergenic | 30.0% | |
| TGGATTCAGAGTTTCAAAAT+TGG | + | 57601:4406-4425 | None:intergenic | 30.0% | |
| TTAATGCAGAGAGAAATGTT+TGG | - | 57601:4310-4329 | MS.gene030750:intron | 30.0% | |
| TTGAACTTAACATTGCACAT+GGG | + | 57601:3082-3101 | None:intergenic | 30.0% | |
| TTTAATTGAACCATTGACAG+AGG | - | 57601:5063-5082 | MS.gene030750:intron | 30.0% | |
| ! | AGAGAGAAATGTTTGGAATA+AGG | - | 57601:4317-4336 | MS.gene030750:intron | 30.0% |
| ! | GATGTTTTCTATGTTATCAC+TGG | - | 57601:4861-4880 | MS.gene030750:CDS | 30.0% |
| ! | GTTGATCAAGTATATCGATT+AGG | + | 57601:4963-4982 | None:intergenic | 30.0% |
| ! | GTTTGAAATAGTGATTCATG+AGG | + | 57601:4809-4828 | None:intergenic | 30.0% |
| ! | TGGGTTGAACAAAATTAATG+TGG | + | 57601:3018-3037 | None:intergenic | 30.0% |
| ! | TTCCAAAATTTCAAGTAAGC+TGG | - | 57601:4434-4453 | MS.gene030750:intron | 30.0% |
| ! | TTTTTCCATACCTTGTGAAA+GGG | + | 57601:5143-5162 | None:intergenic | 30.0% |
| !! | ACTGCAGATATATATTTTGG+TGG | - | 57601:4074-4093 | MS.gene030750:intron | 30.0% |
| !! | AGTTTTATCAGAAGTATGCA+TGG | - | 57601:5401-5420 | MS.gene030750:intron | 30.0% |
| !!! | AGCATTTTAGAACCACATTT+TGG | - | 57601:3331-3350 | MS.gene030750:CDS | 30.0% |
| !!! | GATGCTTCTTTTGGAATATT+GGG | - | 57601:2833-2852 | MS.gene030750:CDS | 30.0% |
| !!! | GTATGGACTATTTTTTACAC+GGG | - | 57601:3054-3073 | MS.gene030750:intron | 30.0% |
| !!! | TATGGACTATTTTTTACACG+GGG | - | 57601:3055-3074 | MS.gene030750:intron | 30.0% |
| AAAAGGACATGCATGCAAAA+AGG | + | 57601:4038-4057 | None:intergenic | 35.0% | |
| AAAAGTCGACCAATCTGAAA+GGG | - | 57601:3155-3174 | MS.gene030750:intron | 35.0% | |
| ACAAGGTATGGAAAAACTAC+AGG | - | 57601:5147-5166 | MS.gene030750:intron | 35.0% | |
| ACATCCAAAATTTGGAAGCA+GGG | + | 57601:3387-3406 | None:intergenic | 35.0% | |
| ACCGTCATATCAAACATGTA+TGG | - | 57601:3037-3056 | MS.gene030750:intron | 35.0% | |
| AGACCTAAACAGACAAATGT+TGG | - | 57601:4722-4741 | MS.gene030750:intron | 35.0% | |
| AGAGCTAGATCATACAAAAC+AGG | - | 57601:3640-3659 | MS.gene030750:CDS | 35.0% | |
| AGATGGATATTGCAATAGAG+AGG | - | 57601:5227-5246 | MS.gene030750:intron | 35.0% | |
| AGTGAGGTCATTGCTAAAAT+AGG | + | 57601:4159-4178 | None:intergenic | 35.0% | |
| ATACATGTTTGATATGACGG+TGG | + | 57601:3038-3057 | None:intergenic | 35.0% | |
| ATGTTTGTGATGAGATTTGC+AGG | - | 57601:5030-5049 | MS.gene030750:CDS | 35.0% | |
| CAAATTGGGGAACTTGTAAA+TGG | - | 57601:4783-4802 | MS.gene030750:intron | 35.0% | |
| CAAGAAGGAAAACATACTCA+AGG | + | 57601:4607-4626 | None:intergenic | 35.0% | |
| CAAGGTATGGAAAAACTACA+GGG | - | 57601:5148-5167 | MS.gene030750:intron | 35.0% | |
| CACAAACATACATTATGCCA+TGG | + | 57601:5019-5038 | None:intergenic | 35.0% | |
| CATCAAGAGATTGACAAATG+AGG | + | 57601:3732-3751 | None:intergenic | 35.0% | |
| CGATATACTTGATCAACATG+GGG | - | 57601:4966-4985 | MS.gene030750:intron | 35.0% | |
| CTTGATGCAACAAAATTGCA+GGG | - | 57601:3745-3764 | MS.gene030750:CDS | 35.0% | |
| GCATGACTTCTCAAGATTAT+AGG | + | 57601:5104-5123 | None:intergenic | 35.0% | |
| GTCGTTTGAAGAAAAAGGTT+TGG | - | 57601:3494-3513 | MS.gene030750:intron | 35.0% | |
| GTTGAACTTAACATTGCACA+TGG | + | 57601:3083-3102 | None:intergenic | 35.0% | |
| TAAAACTTATACTCCTGCCA+TGG | + | 57601:5388-5407 | None:intergenic | 35.0% | |
| TAAGATGGAGTATGAACACT+GGG | - | 57601:4695-4714 | MS.gene030750:CDS | 35.0% | |
| TAAGGGATTTGAGCAAACTT+TGG | - | 57601:5624-5643 | MS.gene030750:CDS | 35.0% | |
| TACATGTTTGATATGACGGT+GGG | + | 57601:3037-3056 | None:intergenic | 35.0% | |
| TCACACCAAAAAATTTCCAC+AGG | + | 57601:4377-4396 | None:intergenic | 35.0% | |
| TCTATTGCAATATCCATCTG+TGG | + | 57601:5226-5245 | None:intergenic | 35.0% | |
| TCTTGATGCAACAAAATTGC+AGG | - | 57601:3744-3763 | MS.gene030750:CDS | 35.0% | |
| TGAATACTTTCAACGCCTAA+GGG | - | 57601:5607-5626 | MS.gene030750:CDS | 35.0% | |
| TGTCACTGCTCTTATAAATG+TGG | - | 57601:3868-3887 | MS.gene030750:intron | 35.0% | |
| TTAAGATGGAGTATGAACAC+TGG | - | 57601:4694-4713 | MS.gene030750:CDS | 35.0% | |
| TTAGACACTACATTCTGTTC+TGG | - | 57601:4553-4572 | MS.gene030750:intron | 35.0% | |
| TTAGATGAGGTTATGAGTAG+TGG | - | 57601:5316-5335 | MS.gene030750:intron | 35.0% | |
| TTGAGGCATAAGGAAAGAAT+GGG | + | 57601:3281-3300 | None:intergenic | 35.0% | |
| ! | AAAGTTTGCTCAAATCCCTT+AGG | + | 57601:5625-5644 | None:intergenic | 35.0% |
| ! | AGCCAGCTTACTTGAAATTT+TGG | + | 57601:4439-4458 | None:intergenic | 35.0% |
| ! | AGGTGTTACCTTTAGAAGTT+CGG | + | 57601:4943-4962 | None:intergenic | 35.0% |
| ! | GTTTTTCCATACCTTGTGAA+AGG | + | 57601:5144-5163 | None:intergenic | 35.0% |
| ! | TAGTAACTGTGTTAGCTTCT+TGG | + | 57601:2880-2899 | None:intergenic | 35.0% |
| ! | TCTACAAAGTTTGAGGCATA+AGG | + | 57601:3291-3310 | None:intergenic | 35.0% |
| ! | TTGTCGCTTCAACATAATCA+AGG | - | 57601:2990-3009 | MS.gene030750:intron | 35.0% |
| ! | TTTGAGGCATAAGGAAAGAA+TGG | + | 57601:3282-3301 | None:intergenic | 35.0% |
| !! | ATTGGTCGACTTTTCCAAAA+TGG | + | 57601:3149-3168 | None:intergenic | 35.0% |
| !! | ATTGTATATTGGTGGTGGAT+TGG | - | 57601:3768-3787 | MS.gene030750:CDS | 35.0% |
| !! | TCCCTTGTAGTTGATTTTGT+AGG | + | 57601:3967-3986 | None:intergenic | 35.0% |
| !!! | CTACTCCTGTGGAAATTTTT+TGG | - | 57601:4369-4388 | MS.gene030750:intron | 35.0% |
| !!! | GCAGATATATATTTTGGTGG+TGG | - | 57601:4077-4096 | MS.gene030750:intron | 35.0% |
| !!! | GGATGCTTCTTTTGGAATAT+TGG | - | 57601:2832-2851 | MS.gene030750:CDS | 35.0% |
| AACCATTGACAGAGGAACAA+CGG | - | 57601:5071-5090 | MS.gene030750:intron | 40.0% | |
| AATAGGATTTGAGTAGCTGC+TGG | + | 57601:4142-4161 | None:intergenic | 40.0% | |
| AGGAACTTACATTCCACAGA+TGG | - | 57601:5210-5229 | MS.gene030750:intron | 40.0% | |
| ATGTGGAAAACAACAGCTGA+AGG | - | 57601:4885-4904 | MS.gene030750:CDS | 40.0% | |
| CAAGCCAGACATCCAAAATT+TGG | + | 57601:3395-3414 | None:intergenic | 40.0% | |
| CATCCAAAATTTGGAAGCAG+GGG | + | 57601:3386-3405 | None:intergenic | 40.0% | |
| GAAAAGTCGACCAATCTGAA+AGG | - | 57601:3154-3173 | MS.gene030750:intron | 40.0% | |
| GACACAACAGTTATGAGTAG+TGG | - | 57601:5348-5367 | MS.gene030750:intron | 40.0% | |
| GACATCCAAAATTTGGAAGC+AGG | + | 57601:3388-3407 | None:intergenic | 40.0% | |
| GAGTATCTGAATGTACAGTG+AGG | + | 57601:4175-4194 | None:intergenic | 40.0% | |
| GATTCCTGACGTTTCATAAC+AGG | - | 57601:3565-3584 | MS.gene030750:CDS | 40.0% | |
| GTGAATACTTTCAACGCCTA+AGG | - | 57601:5606-5625 | MS.gene030750:CDS | 40.0% | |
| TATGTTGAAGCGACAAAGTG+CGG | + | 57601:2986-3005 | None:intergenic | 40.0% | |
| TCTATGTTATCACTGGCATG+TGG | - | 57601:4868-4887 | MS.gene030750:CDS | 40.0% | |
| TGCAAAGTGAGTCCAAAATG+TGG | + | 57601:3346-3365 | None:intergenic | 40.0% | |
| TGGAAAACAATGCTGATCCA+TGG | - | 57601:5368-5387 | MS.gene030750:intron | 40.0% | |
| TGTGGAAAACAACAGCTGAA+GGG | - | 57601:4886-4905 | MS.gene030750:CDS | 40.0% | |
| TTGCAGGGATTGTATATTGG+TGG | - | 57601:3760-3779 | MS.gene030750:CDS | 40.0% | |
| ! | CTGCTGTCATATTTCTACCA+TGG | - | 57601:4999-5018 | MS.gene030750:CDS | 40.0% |
| ! | GAAGGGTTTTTCTTGTGGAT+TGG | - | 57601:4903-4922 | MS.gene030750:intron | 40.0% |
| ! | GCTTCCAAATTTTGGATGTC+TGG | - | 57601:3388-3407 | MS.gene030750:CDS | 40.0% |
| ! | GTTACCTTTAGAAGTTCGGA+GGG | + | 57601:4939-4958 | None:intergenic | 40.0% |
| ! | TAACTGTGTTAGCTTCTTGG+TGG | + | 57601:2877-2896 | None:intergenic | 40.0% |
| ! | TGTTACCTTTAGAAGTTCGG+AGG | + | 57601:4940-4959 | None:intergenic | 40.0% |
| ! | TTGCTACTTGCTTGATATCG+CGG | - | 57601:2916-2935 | MS.gene030750:CDS | 40.0% |
| !! | GTGTCGTTTAAAGCTGTTAC+AGG | - | 57601:3610-3629 | MS.gene030750:CDS | 40.0% |
| !! | TTTGCTGGCTCTGTAAATTC+AGG | - | 57601:3808-3827 | MS.gene030750:intron | 40.0% |
| AAACAATGCTGATCCATGGC+AGG | - | 57601:5372-5391 | MS.gene030750:intron | 45.0% | |
| AACCGTTGTTCCTCTGTCAA+TGG | + | 57601:5076-5095 | None:intergenic | 45.0% | |
| ACTTTGCACTGCAGATTAGG+AGG | - | 57601:3358-3377 | MS.gene030750:CDS | 45.0% | |
| AGATGCCCTTTCACAAGGTA+TGG | - | 57601:5135-5154 | MS.gene030750:intron | 45.0% | |
| AGGCCAATAAGCCCTAGTTT+AGG | + | 57601:4104-4123 | None:intergenic | 45.0% | |
| CAGGGATTGTATATTGGTGG+TGG | - | 57601:3763-3782 | MS.gene030750:CDS | 45.0% | |
| CTCACTTTGCACTGCAGATT+AGG | - | 57601:3355-3374 | MS.gene030750:CDS | 45.0% | |
| CTTTGCACTGCAGATTAGGA+GGG | - | 57601:3359-3378 | MS.gene030750:CDS | 45.0% | |
| GCTGGCTATTATGTACCTAG+TGG | - | 57601:4452-4471 | MS.gene030750:intron | 45.0% | |
| GGACCTAAACTAGGGCTTAT+TGG | - | 57601:4098-4117 | MS.gene030750:intron | 45.0% | |
| GGATATTGCAATAGAGAGGC+TGG | - | 57601:5231-5250 | MS.gene030750:intron | 45.0% | |
| GTGATGAGATTTGCAGGTTC+TGG | - | 57601:5036-5055 | MS.gene030750:intron | 45.0% | |
| TGAGCCTGTTATGAAACGTC+AGG | + | 57601:3572-3591 | None:intergenic | 45.0% | |
| ! | CAGCTGAAGGGTTTTTCTTG+TGG | - | 57601:4898-4917 | MS.gene030750:intron | 45.0% |
| !! | AAAGGGCATCTTCTGCTTGT+CGG | + | 57601:5126-5145 | None:intergenic | 45.0% |
| !! | ATTAGAGGGTACTACTCCTG+TGG | - | 57601:4358-4377 | MS.gene030750:intron | 45.0% |
| !! | CTGGCTCTGTAAATTCAGGT+TGG | - | 57601:3812-3831 | MS.gene030750:intron | 45.0% |
| !! | TTGGTGGTGGACCTAAACTA+GGG | - | 57601:4090-4109 | MS.gene030750:intron | 45.0% |
| !! | TTTGGTGGTGGACCTAAACT+AGG | - | 57601:4089-4108 | MS.gene030750:intron | 45.0% |
| !!! | GGGTTTTTCTTGTGGATTGG+AGG | - | 57601:4906-4925 | MS.gene030750:intron | 45.0% |
| AATAGAGAGGCTGGAAGCTC+TGG | - | 57601:5240-5259 | MS.gene030750:intron | 50.0% | |
| ACAGGCTGATCATCTTCGAC+AGG | - | 57601:5517-5536 | MS.gene030750:intron | 50.0% | |
| ACGTCTCGCACAAAATCGAG+AGG | - | 57601:3459-3478 | MS.gene030750:intron | 50.0% | |
| CCATCGAGCAGTTTGACGTA+CGG | + | 57601:5573-5592 | None:intergenic | 50.0% | |
| CTTGTTGACACAGTTGCAGC+AGG | - | 57601:5175-5194 | MS.gene030750:intron | 50.0% | |
| GATGGAGTATGAACACTGGG+TGG | - | 57601:4698-4717 | MS.gene030750:CDS | 50.0% | |
| GATTTGAGTAGCTGCTGGTC+TGG | + | 57601:4137-4156 | None:intergenic | 50.0% | |
| GCAGAAGATGCCCTTTCACA+AGG | - | 57601:5130-5149 | MS.gene030750:intron | 50.0% | |
| TCGACCCTCCGAACTTCTAA+AGG | - | 57601:4932-4951 | MS.gene030750:intron | 50.0% | |
| TCGCATCAGCCCTTTCAGAT+TGG | + | 57601:3167-3186 | None:intergenic | 50.0% | |
| TTGTACACAGTGCTGCCACT+AGG | + | 57601:4470-4489 | None:intergenic | 50.0% | |
| ! | GGCTTATTGGCCTCACCATT+GGG | - | 57601:4111-4130 | MS.gene030750:intron | 50.0% |
| ! | GGTCCCCTGCTTCCAAATTT+TGG | - | 57601:3380-3399 | MS.gene030750:CDS | 50.0% |
| !! | TCTGGCTAGCTTTGTGAACC+AGG | - | 57601:5258-5277 | MS.gene030750:intron | 50.0% |
| CCGTACGTCAAACTGCTCGA+TGG | - | 57601:5570-5589 | MS.gene030750:intron | 55.0% | |
| GCAGCAGGACAACTCGTTGA+AGG | - | 57601:5190-5209 | MS.gene030750:intron | 55.0% | |
| GCTCGATGGCTGCTTGCTTT+GGG | - | 57601:5584-5603 | MS.gene030750:intron | 55.0% | |
| TGCAGGTTCACGAGGACGAT+TGG | + | 57601:5651-5670 | None:intergenic | 55.0% | |
| TGCTCGATGGCTGCTTGCTT+TGG | - | 57601:5583-5602 | MS.gene030750:intron | 55.0% | |
| ! | GGGCTTATTGGCCTCACCAT+TGG | - | 57601:4110-4129 | MS.gene030750:intron | 55.0% |
| ! | TAGCTGCTGGTCTGGCCCAA+TGG | + | 57601:4129-4148 | None:intergenic | 60.0% |
| ! | GCTGGTCTGGCCCAATGGTG+AGG | + | 57601:4124-4143 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57601 | gene | 2827 | 5673 | 2827 | ID=MS.gene030750 |
| 57601 | mRNA | 2827 | 5673 | 2827 | ID=MS.gene030750.t1;Parent=MS.gene030750 |
| 57601 | exon | 5596 | 5673 | 5596 | ID=MS.gene030750.t1.exon1;Parent=MS.gene030750.t1 |
| 57601 | CDS | 5596 | 5673 | 5596 | ID=cds.MS.gene030750.t1;Parent=MS.gene030750.t1 |
| 57601 | exon | 4990 | 5049 | 4990 | ID=MS.gene030750.t1.exon2;Parent=MS.gene030750.t1 |
| 57601 | CDS | 4990 | 5049 | 4990 | ID=cds.MS.gene030750.t1;Parent=MS.gene030750.t1 |
| 57601 | exon | 4839 | 4913 | 4839 | ID=MS.gene030750.t1.exon3;Parent=MS.gene030750.t1 |
| 57601 | CDS | 4839 | 4913 | 4839 | ID=cds.MS.gene030750.t1;Parent=MS.gene030750.t1 |
| 57601 | exon | 4671 | 4734 | 4671 | ID=MS.gene030750.t1.exon4;Parent=MS.gene030750.t1 |
| 57601 | CDS | 4671 | 4734 | 4671 | ID=cds.MS.gene030750.t1;Parent=MS.gene030750.t1 |
| 57601 | exon | 3547 | 3818 | 3547 | ID=MS.gene030750.t1.exon5;Parent=MS.gene030750.t1 |
| 57601 | CDS | 3547 | 3818 | 3547 | ID=cds.MS.gene030750.t1;Parent=MS.gene030750.t1 |
| 57601 | exon | 3221 | 3448 | 3221 | ID=MS.gene030750.t1.exon6;Parent=MS.gene030750.t1 |
| 57601 | CDS | 3221 | 3448 | 3221 | ID=cds.MS.gene030750.t1;Parent=MS.gene030750.t1 |
| 57601 | exon | 2827 | 2979 | 2827 | ID=MS.gene030750.t1.exon7;Parent=MS.gene030750.t1 |
| 57601 | CDS | 2827 | 2979 | 2827 | ID=cds.MS.gene030750.t1;Parent=MS.gene030750.t1 |
| Gene Sequence |
| Protein sequence |
