Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030776.t1 | XP_003630065.2 | 87.4 | 460 | 21 | 2 | 1 | 438 | 1 | 445 | 7.00E-220 | 773.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030776.t1 | Q9LX16 | 44.7 | 445 | 184 | 11 | 1 | 411 | 1 | 417 | 1.2e-82 | 308.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030776.t1 | G7LAE2 | 87.4 | 460 | 21 | 2 | 1 | 438 | 1 | 445 | 5.0e-220 | 773.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene030776.t1 | TF | EIL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030776.t1 | MTR_8g091370 | 87.391 | 460 | 21 | 2 | 1 | 438 | 1 | 445 | 0.0 | 739 |
| MS.gene030776.t1 | MTR_3g087530 | 49.775 | 444 | 148 | 10 | 19 | 437 | 29 | 422 | 7.02e-125 | 369 |
| MS.gene030776.t1 | MTR_5g087790 | 42.611 | 406 | 158 | 8 | 12 | 344 | 39 | 442 | 9.98e-100 | 310 |
| MS.gene030776.t1 | MTR_3g078770 | 43.603 | 383 | 143 | 8 | 23 | 334 | 53 | 433 | 4.60e-96 | 301 |
| MS.gene030776.t1 | MTR_2g098470 | 52.490 | 261 | 94 | 4 | 16 | 250 | 32 | 288 | 5.86e-82 | 264 |
| MS.gene030776.t1 | MTR_6g460640 | 43.359 | 256 | 120 | 3 | 15 | 249 | 36 | 287 | 1.09e-68 | 230 |
| MS.gene030776.t1 | MTR_6g060600 | 42.969 | 256 | 121 | 3 | 15 | 249 | 36 | 287 | 7.80e-68 | 228 |
| MS.gene030776.t1 | MTR_3g010790 | 41.634 | 257 | 110 | 7 | 73 | 305 | 1 | 241 | 3.56e-55 | 191 |
| MS.gene030776.t1 | MTR_1g024420 | 40.952 | 105 | 51 | 2 | 18 | 114 | 6 | 107 | 6.13e-21 | 88.2 |
| MS.gene030776.t1 | MTR_7g095580 | 42.188 | 64 | 37 | 0 | 62 | 125 | 1 | 64 | 3.92e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030776.t1 | AT5G10120 | 44.057 | 488 | 192 | 14 | 1 | 435 | 1 | 460 | 5.16e-115 | 345 |
| MS.gene030776.t1 | AT5G65100 | 40.381 | 525 | 195 | 13 | 17 | 435 | 33 | 545 | 6.54e-109 | 332 |
| MS.gene030776.t1 | AT3G20770 | 43.990 | 391 | 149 | 8 | 12 | 334 | 39 | 427 | 1.79e-97 | 305 |
| MS.gene030776.t1 | AT2G27050 | 42.157 | 408 | 154 | 10 | 16 | 343 | 43 | 448 | 4.50e-97 | 303 |
| MS.gene030776.t1 | AT1G73730 | 45.455 | 308 | 128 | 5 | 16 | 298 | 20 | 312 | 3.26e-83 | 266 |
| MS.gene030776.t1 | AT1G73730 | 45.455 | 308 | 128 | 5 | 16 | 298 | 32 | 324 | 3.47e-83 | 266 |
| MS.gene030776.t1 | AT5G21120 | 36.870 | 377 | 169 | 10 | 26 | 341 | 52 | 420 | 1.41e-66 | 221 |
| MS.gene030776.t1 | AT5G21120 | 36.870 | 377 | 169 | 10 | 26 | 341 | 52 | 420 | 1.41e-66 | 221 |
| MS.gene030776.t1 | AT5G21120 | 36.870 | 377 | 169 | 10 | 26 | 341 | 59 | 427 | 1.57e-66 | 221 |
Find 65 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATGAAGCAACCTCAATT+TGG | 0.212001 | 4.3:-9908361 | MS.gene030776:CDS |
| AGAAGATTCCCTCTTGAAAT+AGG | 0.244472 | 4.3:-9909184 | MS.gene030776:intron |
| AAAACCTCACGATTTGAAAA+AGG | 0.258892 | 4.3:-9909071 | MS.gene030776:CDS |
| GTCAGATGATTGGTTGAATA+TGG | 0.270079 | 4.3:-9908600 | MS.gene030776:CDS |
| AAATGCATATATGATGAAAT+TGG | 0.270352 | 4.3:+9909280 | None:intergenic |
| GATGAAGCAAAGCTTGTTCT+TGG | 0.284476 | 4.3:+9908906 | None:intergenic |
| CTTTCTGAAGAACCTGTTAC+TGG | 0.287865 | 4.3:+9909418 | None:intergenic |
| TACAAGATTATGGTAGCTTT+TGG | 0.305733 | 4.3:-9908481 | MS.gene030776:CDS |
| TTCCCTTGAGCTTCTGTAGC+AGG | 0.356757 | 4.3:+9909605 | None:intergenic |
| GACTTGCAAGATACTACTTT+AGG | 0.357446 | 4.3:-9909250 | MS.gene030776:CDS |
| GATATGACATTACAAGATTA+TGG | 0.370644 | 4.3:-9908491 | MS.gene030776:CDS |
| CTTCAGAAAGCTTGCGTGAA+TGG | 0.389051 | 4.3:-9909405 | MS.gene030776:CDS |
| TGAGCTTCTGTAGCAGGATT+CGG | 0.390190 | 4.3:+9909611 | None:intergenic |
| GAGGGATGATGGGAAGTGTT+TGG | 0.401632 | 4.3:+9909336 | None:intergenic |
| TCATGAAGCAACCTCAATTT+GGG | 0.408798 | 4.3:-9908360 | MS.gene030776:CDS |
| CTGATGTTGATAAAGTTAGA+AGG | 0.416794 | 4.3:-9909003 | MS.gene030776:CDS |
| ATTGCACATGGGAGTGGACT+TGG | 0.420096 | 4.3:-9908435 | MS.gene030776:CDS |
| TGTAAGAACAGAGTGATTCA+TGG | 0.427384 | 4.3:+9908660 | None:intergenic |
| GAGAAAGGAAAACCAGTAAC+AGG | 0.433253 | 4.3:-9909430 | MS.gene030776:CDS |
| CTTCTAACTTTATCAACATC+AGG | 0.442768 | 4.3:+9909004 | None:intergenic |
| TTGTTCTTGGTTCATTACTT+TGG | 0.448117 | 4.3:+9908919 | None:intergenic |
| CCCATGCACGAATCACTTTG+TGG | 0.451226 | 4.3:+9908710 | None:intergenic |
| CTTAATGCGGTCTCTTGCGC+TGG | 0.451346 | 4.3:+9908383 | None:intergenic |
| CACCTTCTTCTGATATCTTG+AGG | 0.458091 | 4.3:+9908870 | None:intergenic |
| GGATAATGATAAACAGAGTC+AGG | 0.464569 | 4.3:-9908567 | MS.gene030776:CDS |
| TACGGTATTGTGCCAGAGAA+AGG | 0.473904 | 4.3:-9909445 | MS.gene030776:CDS |
| CTACAGAAGCTCAAGGGAAA+AGG | 0.474169 | 4.3:-9909601 | MS.gene030776:CDS |
| CTTTGAAAATCAACAAGAGT+TGG | 0.476438 | 4.3:-9909314 | MS.gene030776:CDS |
| TCAAGAGGGAATCTTCTTTG+TGG | 0.478086 | 4.3:+9909190 | None:intergenic |
| TAATCTTCATCATGTATTTG+AGG | 0.479390 | 4.3:+9909497 | None:intergenic |
| TCTTAGCACTGAGAAGAGAA+AGG | 0.491476 | 4.3:-9908801 | MS.gene030776:CDS |
| TGGTTGAATATGGATATAGC+AGG | 0.497216 | 4.3:-9908590 | MS.gene030776:CDS |
| TGATAAACAGAGTCAGGATC+AGG | 0.497758 | 4.3:-9908561 | MS.gene030776:CDS |
| TCTTGAATTGCACATGGGAG+TGG | 0.500811 | 4.3:-9908441 | MS.gene030776:CDS |
| TAAACATGATTTGAATCACT+TGG | 0.514601 | 4.3:-9908831 | MS.gene030776:CDS |
| CTTAGCACTGAGAAGAGAAA+GGG | 0.517849 | 4.3:-9908800 | MS.gene030776:CDS |
| AATCATCTGACAGAAAATCA+TGG | 0.519514 | 4.3:+9908612 | None:intergenic |
| CCACAAAGTGATTCGTGCAT+GGG | 0.534919 | 4.3:-9908710 | MS.gene030776:CDS |
| GGCTTGGAAAGTTTCTGTGT+TGG | 0.536507 | 4.3:-9909050 | MS.gene030776:CDS |
| TCCACAAAGTGATTCGTGCA+TGG | 0.536930 | 4.3:-9908711 | MS.gene030776:CDS |
| CAGCTAAAGATAGTGCAACT+TGG | 0.538503 | 4.3:-9908943 | MS.gene030776:CDS |
| ATCTGACAGAAAATCATGGA+AGG | 0.555309 | 4.3:+9908616 | None:intergenic |
| ATATGTCAAGTCCCAAATTG+AGG | 0.558592 | 4.3:+9908349 | None:intergenic |
| GGTTGAATATGGATATAGCA+GGG | 0.564355 | 4.3:-9908589 | MS.gene030776:CDS |
| AGAGGGAATCTTCTTTGTGG+TGG | 0.566976 | 4.3:+9909193 | None:intergenic |
| ATCATGTTTAGTACTACTAG+AGG | 0.570876 | 4.3:+9908844 | None:intergenic |
| TGCCTCAAGATATCAGAAGA+AGG | 0.584848 | 4.3:-9908872 | MS.gene030776:CDS |
| CAAATTCAGTCAAAATGCAC+CGG | 0.585132 | 4.3:-9909368 | MS.gene030776:CDS |
| ATGACAATATGCAAAGCTCA+AGG | 0.586274 | 4.3:-9909475 | MS.gene030776:CDS |
| CAGAAAGCTTGCGTGAATGG+TGG | 0.590210 | 4.3:-9909402 | MS.gene030776:CDS |
| CAAAAGATGAGGCATCAAGA+AGG | 0.600880 | 4.3:-9909549 | MS.gene030776:CDS |
| AAGTGTTTGGAAACTGCATC+CGG | 0.603092 | 4.3:+9909349 | None:intergenic |
| GCAAGATCTTGAATTGCACA+TGG | 0.607490 | 4.3:-9908447 | MS.gene030776:CDS |
| AATCCTGCTACAGAAGCTCA+AGG | 0.613828 | 4.3:-9909608 | MS.gene030776:CDS |
| GGTTGCTTCATGACTTAATG+CGG | 0.616145 | 4.3:+9908370 | None:intergenic |
| TCTGACAGAAAATCATGGAA+GGG | 0.626048 | 4.3:+9908617 | None:intergenic |
| GGAGCCAAACCTATTTCAAG+AGG | 0.626663 | 4.3:+9909175 | None:intergenic |
| TGTTCTTACAGAACAGAACA+AGG | 0.627946 | 4.3:-9908647 | MS.gene030776:CDS |
| TAATGAGTCGAGAGAGATCG+TGG | 0.631459 | 4.3:-9908513 | MS.gene030776:CDS |
| ATCCTGCTACAGAAGCTCAA+GGG | 0.643091 | 4.3:-9909607 | MS.gene030776:CDS |
| GTTGAATATGGATATAGCAG+GGG | 0.650528 | 4.3:-9908588 | MS.gene030776:CDS |
| AAACCAACAAGCAAAAGATG+AGG | 0.678086 | 4.3:-9909560 | MS.gene030776:CDS |
| GAGCCAAACCTATTTCAAGA+GGG | 0.689251 | 4.3:+9909176 | None:intergenic |
| CAAGATCTTGAATTGCACAT+GGG | 0.698747 | 4.3:-9908446 | MS.gene030776:CDS |
| GGTGGTTTGTCAGAACAACA+TGG | 0.708986 | 4.3:-9909109 | MS.gene030776:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGCATATATGATGAAAT+TGG | + | chr4.3:9908769-9908788 | None:intergenic | 20.0% |
| ! | GATATGACATTACAAGATTA+TGG | - | chr4.3:9909555-9909574 | MS.gene030776:CDS | 25.0% |
| ! | TAAACATGATTTGAATCACT+TGG | - | chr4.3:9909215-9909234 | MS.gene030776:CDS | 25.0% |
| ! | TAATCTTCATCATGTATTTG+AGG | + | chr4.3:9908552-9908571 | None:intergenic | 25.0% |
| !! | ATTTTCAGACAAAAGTTCAA+GGG | - | chr4.3:9909359-9909378 | MS.gene030776:CDS | 25.0% |
| !! | TTCTTCTTTTTGTTGATCAA+AGG | + | chr4.3:9908374-9908393 | None:intergenic | 25.0% |
| !!! | AAATCGTGAGGTTTTTTATA+AGG | + | chr4.3:9908970-9908989 | None:intergenic | 25.0% |
| !!! | TGCTGATTTTGATTTTGATA+AGG | - | chr4.3:9909284-9909303 | MS.gene030776:CDS | 25.0% |
| AAAACCTCACGATTTGAAAA+AGG | - | chr4.3:9908975-9908994 | MS.gene030776:CDS | 30.0% | |
| AATCATCTGACAGAAAATCA+TGG | + | chr4.3:9909437-9909456 | None:intergenic | 30.0% | |
| ATCATGTTTAGTACTACTAG+AGG | + | chr4.3:9909205-9909224 | None:intergenic | 30.0% | |
| CTTCTAACTTTATCAACATC+AGG | + | chr4.3:9909045-9909064 | None:intergenic | 30.0% | |
| TTGTTCTTGGTTCATTACTT+TGG | + | chr4.3:9909130-9909149 | None:intergenic | 30.0% | |
| ! | ATGATTTTCTGTCAGATGAT+TGG | - | chr4.3:9909436-9909455 | MS.gene030776:CDS | 30.0% |
| ! | CTGATGTTGATAAAGTTAGA+AGG | - | chr4.3:9909043-9909062 | MS.gene030776:CDS | 30.0% |
| ! | CTTTGAAAATCAACAAGAGT+TGG | - | chr4.3:9908732-9908751 | MS.gene030776:CDS | 30.0% |
| ! | GATTTTCAGACAAAAGTTCA+AGG | - | chr4.3:9909358-9909377 | MS.gene030776:CDS | 30.0% |
| ! | TACAAGATTATGGTAGCTTT+TGG | - | chr4.3:9909565-9909584 | MS.gene030776:CDS | 30.0% |
| !!! | ACTCTTGTTGATTTTCAAAG+AGG | + | chr4.3:9908732-9908751 | None:intergenic | 30.0% |
| !!! | CTCTTGTTGATTTTCAAAGA+GGG | + | chr4.3:9908731-9908750 | None:intergenic | 30.0% |
| AAACCAACAAGCAAAAGATG+AGG | - | chr4.3:9908486-9908505 | MS.gene030776:CDS | 35.0% | |
| AGAAGATTCCCTCTTGAAAT+AGG | - | chr4.3:9908862-9908881 | MS.gene030776:CDS | 35.0% | |
| ATATGTCAAGTCCCAAATTG+AGG | + | chr4.3:9909700-9909719 | None:intergenic | 35.0% | |
| ATCTGACAGAAAATCATGGA+AGG | + | chr4.3:9909433-9909452 | None:intergenic | 35.0% | |
| ATGACAATATGCAAAGCTCA+AGG | - | chr4.3:9908571-9908590 | MS.gene030776:CDS | 35.0% | |
| ATTCCCTCTTGAAATAGGTT+TGG | - | chr4.3:9908867-9908886 | MS.gene030776:CDS | 35.0% | |
| CAAATTCAGTCAAAATGCAC+CGG | - | chr4.3:9908678-9908697 | MS.gene030776:CDS | 35.0% | |
| CAAGATCTTGAATTGCACAT+GGG | - | chr4.3:9909600-9909619 | MS.gene030776:CDS | 35.0% | |
| GACTTGCAAGATACTACTTT+AGG | - | chr4.3:9908796-9908815 | MS.gene030776:CDS | 35.0% | |
| GGATAATGATAAACAGAGTC+AGG | - | chr4.3:9909479-9909498 | MS.gene030776:CDS | 35.0% | |
| GGTTGAATATGGATATAGCA+GGG | - | chr4.3:9909457-9909476 | MS.gene030776:CDS | 35.0% | |
| GTTGAATATGGATATAGCAG+GGG | - | chr4.3:9909458-9909477 | MS.gene030776:CDS | 35.0% | |
| TAATGGAACAGAACAGTAGT+GGG | - | chr4.3:9908906-9908925 | MS.gene030776:CDS | 35.0% | |
| TCATGAAGCAACCTCAATTT+GGG | - | chr4.3:9909686-9909705 | MS.gene030776:CDS | 35.0% | |
| TCTGACAGAAAATCATGGAA+GGG | + | chr4.3:9909432-9909451 | None:intergenic | 35.0% | |
| TGGTTGAATATGGATATAGC+AGG | - | chr4.3:9909456-9909475 | MS.gene030776:CDS | 35.0% | |
| TGTAAGAACAGAGTGATTCA+TGG | + | chr4.3:9909389-9909408 | None:intergenic | 35.0% | |
| TGTTCTTACAGAACAGAACA+AGG | - | chr4.3:9909399-9909418 | MS.gene030776:CDS | 35.0% | |
| ! | GATTTTCAAAGAGGGATGAT+GGG | + | chr4.3:9908723-9908742 | None:intergenic | 35.0% |
| ! | GTCAGATGATTGGTTGAATA+TGG | - | chr4.3:9909446-9909465 | MS.gene030776:CDS | 35.0% |
| ! | TGATTTTCAAAGAGGGATGA+TGG | + | chr4.3:9908724-9908743 | None:intergenic | 35.0% |
| !! | AAAGCTCAAGGTTTTGTCTA+CGG | - | chr4.3:9908583-9908602 | MS.gene030776:CDS | 35.0% |
| !!! | GAGGTTTTTTATAAGGTGGT+GGG | + | chr4.3:9908963-9908982 | None:intergenic | 35.0% |
| !!! | TCGTGAGGTTTTTTATAAGG+TGG | + | chr4.3:9908967-9908986 | None:intergenic | 35.0% |
| !!! | TGAGGTTTTTTATAAGGTGG+TGG | + | chr4.3:9908964-9908983 | None:intergenic | 35.0% |
| AAGTGTTTGGAAACTGCATC+CGG | + | chr4.3:9908700-9908719 | None:intergenic | 40.0% | |
| AATGGAACAGAACAGTAGTG+GGG | - | chr4.3:9908907-9908926 | MS.gene030776:CDS | 40.0% | |
| CACCTTCTTCTGATATCTTG+AGG | + | chr4.3:9909179-9909198 | None:intergenic | 40.0% | |
| CACTACTGTTCTGTTCCATT+AGG | + | chr4.3:9908907-9908926 | None:intergenic | 40.0% | |
| CAGCTAAAGATAGTGCAACT+TGG | - | chr4.3:9909103-9909122 | MS.gene030776:intron | 40.0% | |
| CTAATGGAACAGAACAGTAG+TGG | - | chr4.3:9908905-9908924 | MS.gene030776:CDS | 40.0% | |
| CTCACGATTTGAAAAAGGCT+TGG | - | chr4.3:9908980-9908999 | MS.gene030776:CDS | 40.0% | |
| GAGAAAGGAAAACCAGTAAC+AGG | - | chr4.3:9908616-9908635 | MS.gene030776:CDS | 40.0% | |
| GAGCCAAACCTATTTCAAGA+GGG | + | chr4.3:9908873-9908892 | None:intergenic | 40.0% | |
| GCAAGATCTTGAATTGCACA+TGG | - | chr4.3:9909599-9909618 | MS.gene030776:CDS | 40.0% | |
| GGACTTGGAAAAAGATAACG+TGG | - | chr4.3:9909626-9909645 | MS.gene030776:CDS | 40.0% | |
| GGTTGCTTCATGACTTAATG+CGG | + | chr4.3:9909679-9909698 | None:intergenic | 40.0% | |
| GTCATGAAGCAACCTCAATT+TGG | - | chr4.3:9909685-9909704 | MS.gene030776:CDS | 40.0% | |
| TCAAGAGGGAATCTTCTTTG+TGG | + | chr4.3:9908859-9908878 | None:intergenic | 40.0% | |
| TGATAAACAGAGTCAGGATC+AGG | - | chr4.3:9909485-9909504 | MS.gene030776:CDS | 40.0% | |
| TGCCTCAAGATATCAGAAGA+AGG | - | chr4.3:9909174-9909193 | MS.gene030776:intron | 40.0% | |
| ! | ATGCCTCATCTTTTGCTTGT+TGG | + | chr4.3:9908492-9908511 | None:intergenic | 40.0% |
| ! | CAAAAGATGAGGCATCAAGA+AGG | - | chr4.3:9908497-9908516 | MS.gene030776:CDS | 40.0% |
| ! | CTTAGCACTGAGAAGAGAAA+GGG | - | chr4.3:9909246-9909265 | MS.gene030776:CDS | 40.0% |
| ! | CTTTCTGAAGAACCTGTTAC+TGG | + | chr4.3:9908631-9908650 | None:intergenic | 40.0% |
| ! | GATGAAGCAAAGCTTGTTCT+TGG | + | chr4.3:9909143-9909162 | None:intergenic | 40.0% |
| ! | TCTTAGCACTGAGAAGAGAA+AGG | - | chr4.3:9909245-9909264 | MS.gene030776:CDS | 40.0% |
| !!! | CAAGCCTTTTTCAAATCGTG+AGG | + | chr4.3:9908982-9909001 | None:intergenic | 40.0% |
| !!! | GTTACTGGTTTTCCTTTCTC+TGG | + | chr4.3:9908616-9908635 | None:intergenic | 40.0% |
| AATCCTGCTACAGAAGCTCA+AGG | - | chr4.3:9908438-9908457 | MS.gene030776:CDS | 45.0% | |
| AGAGGGAATCTTCTTTGTGG+TGG | + | chr4.3:9908856-9908875 | None:intergenic | 45.0% | |
| ATCCTGCTACAGAAGCTCAA+GGG | - | chr4.3:9908439-9908458 | MS.gene030776:CDS | 45.0% | |
| CCACAAAGTGATTCGTGCAT+GGG | - | chr4.3:9909336-9909355 | MS.gene030776:CDS | 45.0% | |
| CTACAGAAGCTCAAGGGAAA+AGG | - | chr4.3:9908445-9908464 | MS.gene030776:CDS | 45.0% | |
| CTTCAGAAAGCTTGCGTGAA+TGG | - | chr4.3:9908641-9908660 | MS.gene030776:CDS | 45.0% | |
| GGAGCCAAACCTATTTCAAG+AGG | + | chr4.3:9908874-9908893 | None:intergenic | 45.0% | |
| GGCTTGGAAAGTTTCTGTGT+TGG | - | chr4.3:9908996-9909015 | MS.gene030776:CDS | 45.0% | |
| TAATGAGTCGAGAGAGATCG+TGG | - | chr4.3:9909533-9909552 | MS.gene030776:CDS | 45.0% | |
| TACGGTATTGTGCCAGAGAA+AGG | - | chr4.3:9908601-9908620 | MS.gene030776:CDS | 45.0% | |
| TCCACAAAGTGATTCGTGCA+TGG | - | chr4.3:9909335-9909354 | MS.gene030776:CDS | 45.0% | |
| TCTTGAATTGCACATGGGAG+TGG | - | chr4.3:9909605-9909624 | MS.gene030776:CDS | 45.0% | |
| TGAGCTTCTGTAGCAGGATT+CGG | + | chr4.3:9908438-9908457 | None:intergenic | 45.0% | |
| ! | AAATAGGTTTGGCTCCTCCA+TGG | - | chr4.3:9908878-9908897 | MS.gene030776:CDS | 45.0% |
| ! | GGTGGTTTGTCAGAACAACA+TGG | - | chr4.3:9908937-9908956 | MS.gene030776:CDS | 45.0% |
| CAGAAAGCTTGCGTGAATGG+TGG | - | chr4.3:9908644-9908663 | MS.gene030776:CDS | 50.0% | |
| CCCATGCACGAATCACTTTG+TGG | + | chr4.3:9909339-9909358 | None:intergenic | 50.0% | |
| TCTGTTCCATTAGGCCACCA+TGG | + | chr4.3:9908898-9908917 | None:intergenic | 50.0% | |
| TTCCCTTGAGCTTCTGTAGC+AGG | + | chr4.3:9908444-9908463 | None:intergenic | 50.0% | |
| ! | ACGAGCTGAAAAAGCGCATG+TGG | - | chr4.3:9908407-9908426 | MS.gene030776:CDS | 50.0% |
| ! | ATTGCACATGGGAGTGGACT+TGG | - | chr4.3:9909611-9909630 | MS.gene030776:CDS | 50.0% |
| ! | GAACAGTAGTGGGGTCAACA+AGG | - | chr4.3:9908916-9908935 | MS.gene030776:CDS | 50.0% |
| ! | GCTGAAAAAGCGCATGTGGA+AGG | - | chr4.3:9908411-9908430 | MS.gene030776:CDS | 50.0% |
| !! | GAGGGATGATGGGAAGTGTT+TGG | + | chr4.3:9908713-9908732 | None:intergenic | 50.0% |
| CTTAATGCGGTCTCTTGCGC+TGG | + | chr4.3:9909666-9909685 | None:intergenic | 55.0% | |
| GTTCCATTAGGCCACCATGG+AGG | + | chr4.3:9908895-9908914 | None:intergenic | 55.0% | |
| ! | CAGTAGTGGGGTCAACAAGG+TGG | - | chr4.3:9908919-9908938 | MS.gene030776:CDS | 55.0% |
| ! | TAGGTTTGGCTCCTCCATGG+TGG | - | chr4.3:9908881-9908900 | MS.gene030776:CDS | 55.0% |
| GCTCCTCCATGGTGGCCTAA+TGG | - | chr4.3:9908889-9908908 | MS.gene030776:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 9908343 | 9909725 | 9908343 | ID=MS.gene030776 |
| chr4.3 | mRNA | 9908343 | 9909725 | 9908343 | ID=MS.gene030776.t1;Parent=MS.gene030776 |
| chr4.3 | exon | 9909185 | 9909725 | 9909185 | ID=MS.gene030776.t1.exon1;Parent=MS.gene030776.t1 |
| chr4.3 | CDS | 9909185 | 9909725 | 9909185 | ID=cds.MS.gene030776.t1;Parent=MS.gene030776.t1 |
| chr4.3 | exon | 9908343 | 9909118 | 9908343 | ID=MS.gene030776.t1.exon2;Parent=MS.gene030776.t1 |
| chr4.3 | CDS | 9908343 | 9909118 | 9908343 | ID=cds.MS.gene030776.t1;Parent=MS.gene030776.t1 |
| Gene Sequence |
| Protein sequence |
