AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030821

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030821.t1 MTR_2g093960 31.633 196 119 6 83 278 45 225 5.46e-22 95.1
MS.gene030821.t1 MTR_8g017210 33.929 168 96 6 83 250 75 227 5.87e-22 95.5
MS.gene030821.t1 MTR_4g059870 33.721 172 99 6 83 254 51 207 1.97e-21 94.0
MS.gene030821.t1 MTR_1g093095 36.986 146 86 5 101 243 117 259 4.21e-21 90.9
MS.gene030821.t1 MTR_2g099990 32.370 173 102 6 83 255 59 216 1.95e-20 90.9
MS.gene030821.t1 MTR_2g090745 33.333 162 93 6 69 230 10 156 2.48e-19 87.8
MS.gene030821.t1 MTR_1g112270 32.450 151 91 5 80 230 54 193 3.34e-19 87.8
MS.gene030821.t1 MTR_1g112270 32.432 148 89 5 83 230 68 204 5.36e-19 87.0
MS.gene030821.t1 MTR_2g099990 33.333 162 93 6 94 255 1 147 8.16e-19 85.9
MS.gene030821.t1 MTR_1g016010 35.811 148 85 5 83 230 54 191 9.06e-19 86.3
MS.gene030821.t1 MTR_1g094115 33.775 151 89 5 80 230 57 196 1.58e-18 85.5
MS.gene030821.t1 MTR_1g094115 35.878 131 73 5 100 230 60 179 1.17e-16 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030821.t1 AT1G34370 55.357 168 70 2 84 247 19 185 1.18e-64 204
MS.gene030821.t1 AT1G34370 56.805 169 66 3 84 247 229 395 1.47e-63 208
MS.gene030821.t1 AT1G34370 56.805 169 66 3 84 247 229 395 1.47e-63 208
MS.gene030821.t1 AT5G22890 55.882 170 70 2 85 250 203 371 5.74e-62 200
MS.gene030821.t1 AT1G08290 39.007 141 80 5 101 239 182 318 5.32e-22 94.4
MS.gene030821.t1 AT5G66730 36.486 148 83 5 83 230 45 181 6.22e-22 95.5
MS.gene030821.t1 AT1G13290 37.415 147 87 4 101 245 103 246 8.40e-22 93.2
MS.gene030821.t1 AT5G44160 35.135 148 85 5 83 230 50 186 8.57e-22 95.1
MS.gene030821.t1 AT5G44160 35.135 148 85 5 83 230 11 147 9.45e-22 94.7
MS.gene030821.t1 AT5G60470 34.615 156 90 5 75 230 51 194 1.04e-21 94.7
MS.gene030821.t1 AT5G60470 34.228 149 88 4 82 230 47 185 1.09e-21 94.7
MS.gene030821.t1 AT5G60470 34.615 156 90 5 75 230 47 190 1.11e-21 94.7
MS.gene030821.t1 AT3G45260 31.977 172 103 5 83 254 52 209 1.24e-21 94.4
MS.gene030821.t1 AT3G45260 31.977 172 103 5 83 254 52 209 1.24e-21 94.4
MS.gene030821.t1 AT5G03150 36.301 146 83 4 85 230 68 203 1.31e-21 94.7
MS.gene030821.t1 AT1G51220 39.189 148 83 6 101 246 180 322 2.01e-21 92.8
MS.gene030821.t1 AT3G50700 36.471 170 91 7 61 230 31 183 2.38e-21 93.6
MS.gene030821.t1 AT1G03840 35.099 151 87 5 80 230 49 188 3.27e-21 93.6
MS.gene030821.t1 AT1G03840 35.135 148 85 5 83 230 54 190 5.50e-21 92.8
MS.gene030821.t1 AT3G20880 37.107 159 93 6 101 257 258 411 8.35e-21 91.7
MS.gene030821.t1 AT1G55110 32.934 167 98 5 83 249 76 228 2.39e-20 90.9
MS.gene030821.t1 AT1G55110 32.934 167 98 5 83 249 76 228 2.39e-20 90.9
MS.gene030821.t1 AT1G55110 32.934 167 98 5 83 249 76 228 2.39e-20 90.9
MS.gene030821.t1 AT3G13810 35.135 148 86 4 83 230 83 220 8.40e-20 89.4
MS.gene030821.t1 AT3G13810 35.135 148 86 4 83 230 83 220 8.40e-20 89.4
MS.gene030821.t1 AT3G13810 35.135 148 86 4 83 230 78 215 9.22e-20 89.4
MS.gene030821.t1 AT3G13810 35.135 148 86 4 83 230 64 201 9.69e-20 89.4
MS.gene030821.t1 AT3G13810 35.135 148 86 4 83 230 84 221 1.21e-19 89.0
MS.gene030821.t1 AT3G13810 35.135 148 86 4 83 230 70 207 1.35e-19 89.0
MS.gene030821.t1 AT2G02080 30.526 190 111 8 75 260 61 233 2.68e-19 87.8
MS.gene030821.t1 AT2G02080 30.526 190 111 8 75 260 61 233 2.68e-19 87.8
MS.gene030821.t1 AT2G02080 30.526 190 111 8 75 260 61 233 2.68e-19 87.8
MS.gene030821.t1 AT2G02080 30.526 190 111 8 75 260 61 233 2.68e-19 87.8
MS.gene030821.t1 AT4G02670 35.811 148 85 5 83 230 66 203 3.25e-19 87.0
MS.gene030821.t1 AT4G02670 35.811 148 85 5 83 230 68 205 3.39e-19 87.0
MS.gene030821.t1 AT1G34790 35.329 167 97 8 92 252 137 298 3.85e-19 85.9
MS.gene030821.t1 AT2G02070 32.450 151 91 5 80 230 62 201 4.16e-19 87.4
MS.gene030821.t1 AT2G02070 32.450 151 91 5 80 230 62 201 4.16e-19 87.4
MS.gene030821.t1 AT1G14580 32.692 156 92 6 75 230 60 202 7.44e-19 86.7
MS.gene030821.t1 AT1G14580 32.692 156 92 6 75 230 60 202 7.44e-19 86.7
MS.gene030821.t1 AT1G14580 32.692 156 92 6 75 230 74 216 7.99e-19 86.3
MS.gene030821.t1 AT3G57670 35.862 145 86 6 101 243 219 358 4.14e-18 84.0
MS.gene030821.t1 AT1G25250 33.750 160 96 5 72 230 12 162 2.89e-17 81.3
MS.gene030821.t1 AT2G02080 30.409 171 100 7 94 260 1 156 3.58e-17 81.6
MS.gene030821.t1 AT2G02080 30.409 171 100 7 94 260 1 156 3.58e-17 81.6
MS.gene030821.t1 AT1G25250 35.570 149 86 5 83 230 46 185 3.77e-17 81.3
MS.gene030821.t1 AT2G01940 35.762 151 82 6 83 230 57 195 3.94e-17 81.3
MS.gene030821.t1 AT1G68130 35.570 149 85 5 83 230 54 192 9.91e-17 80.1
MS.gene030821.t1 AT2G01940 35.252 139 75 6 83 218 57 183 3.41e-14 72.8

Find 67 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGATTTGGATAAATTT+TGG 0.104736 4.2:+11323630 MS.gene030821:CDS
GGAGGAATTGTTATTGTTTC+TGG 0.118268 4.2:-11322942 None:intergenic
GGAAGGTTTCTTTGATGATT+TGG 0.263746 4.2:+11323619 MS.gene030821:CDS
CATGTCATCGTCAATGTAAT+TGG 0.286361 4.2:-11322997 None:intergenic
TCCACTTCTGCGAGATTTGC+GGG 0.292814 4.2:+11323090 MS.gene030821:CDS
TGCGTCGAGTTCCACAATTT+TGG 0.303992 4.2:-11323045 None:intergenic
ATGAAGGTTGCAAACGTAAC+AGG 0.321705 4.2:+11323246 MS.gene030821:CDS
GACAATGACTTCTCTTGAAA+TGG 0.326614 4.2:-11323316 None:intergenic
TCTAGGAAGGAGAAATTGTT+TGG 0.374626 4.2:+11323461 MS.gene030821:CDS
GACGAATTGTGGAGGAGATT+TGG 0.390719 4.2:-11322881 None:intergenic
GAGGACTGTGTTTGTTTGAA+TGG 0.398093 4.2:-11322829 None:intergenic
TGTGTTTGTTTGAATGGATT+GGG 0.410517 4.2:-11322823 None:intergenic
CTGTGTTTGTTTGAATGGAT+TGG 0.411205 4.2:-11322824 None:intergenic
TGATTGCATGGATACGTTAC+CGG 0.422874 4.2:+11323598 MS.gene030821:CDS
TTTGGAATGGTAGTTATGAA+TGG 0.430613 4.2:-11323027 None:intergenic
GACGGCGGCGCCGGCAGAAG+AGG 0.442327 4.2:+11323544 MS.gene030821:CDS
TTACGTTTGCAACCTTCATA+AGG 0.442930 4.2:-11323242 None:intergenic
TTGGAATGGTAGTTATGAAT+GGG 0.447738 4.2:-11323026 None:intergenic
GAAGTTCAATCCGTTGAAAT+CGG 0.453409 4.2:+11323277 MS.gene030821:CDS
GGACACGTGGAGCGGTTTGA+AGG 0.462859 4.2:+11323482 MS.gene030821:CDS
TTCTGCGAGATTTGCGGGAA+AGG 0.464202 4.2:+11323095 MS.gene030821:CDS
TTCCACTTCTGCGAGATTTG+CGG 0.470603 4.2:+11323089 MS.gene030821:CDS
AATTGTGGAGGAGATTTGGT+TGG 0.477694 4.2:-11322877 None:intergenic
TAACTACCATTCCAAAATTG+TGG 0.494523 4.2:+11323034 MS.gene030821:CDS
GGAAAAGCAAGCGCGTTTAA+CGG 0.496000 4.2:+11323202 MS.gene030821:CDS
AAAATCAATGACGGCGGCGC+CGG 0.497008 4.2:+11323535 MS.gene030821:CDS
CCCACACCTTCCTCTTCTGC+CGG 0.506138 4.2:-11323554 None:intergenic
GTCGAGTATAACTCGGTTGG+AGG 0.524381 4.2:-11322960 None:intergenic
AAATCATCAAAGAAACCTTC+CGG 0.527715 4.2:-11323617 None:intergenic
CCGGCGGTTGTTGAAGAGAA+AGG 0.528093 4.2:+11323512 MS.gene030821:CDS
GACGAAGGAAAATGATTGCA+TGG 0.537494 4.2:+11323586 MS.gene030821:CDS
TCCCGCAAATCTCGCAGAAG+TGG 0.537900 4.2:-11323091 None:intergenic
AAACAGAACACCGATTTCAA+CGG 0.538702 4.2:-11323287 None:intergenic
GAGTCACGTGAAACAGTGTA+GGG 0.546406 4.2:+11323400 MS.gene030821:CDS
GATGATGACTTGACGAATTG+TGG 0.554147 4.2:-11322892 None:intergenic
TGTTATTGTTTCTGGACAAG+TGG 0.555781 4.2:-11322934 None:intergenic
GGAGAAATTGTTTGGACACG+TGG 0.562238 4.2:+11323469 MS.gene030821:CDS
CAATTACATTGACGATGACA+TGG 0.570490 4.2:+11322998 MS.gene030821:CDS
CGAAAACTCACACGTGCGAT+CGG 0.572334 4.2:+11323339 MS.gene030821:CDS
CTCACACGTGCGATCGGTGT+CGG 0.577837 4.2:+11323345 MS.gene030821:CDS
CGTATGCACATGCGCGCGCA+CGG 0.585406 4.2:+11323140 MS.gene030821:CDS
CCTTTCTCTTCAACAACCGC+CGG 0.591632 4.2:-11323512 None:intergenic
TGCATGGATACGTTACCGGA+AGG 0.593308 4.2:+11323602 MS.gene030821:CDS
GCCGGCAGAAGAGGAAGGTG+TGG 0.596313 4.2:+11323553 MS.gene030821:CDS
AGAGTCACGTGAAACAGTGT+AGG 0.598901 4.2:+11323399 MS.gene030821:CDS
GCGGCGCCGGCAGAAGAGGA+AGG 0.609998 4.2:+11323548 MS.gene030821:CDS
GCGCGCGCATGTGCATACGC+AGG 0.610043 4.2:-11323136 None:intergenic
GCGGTTTGAAGGACACTCGC+CGG 0.611639 4.2:+11323493 MS.gene030821:CDS
CCTGTCGAGTATAACTCGGT+TGG 0.613205 4.2:-11322963 None:intergenic
CCAACCGAGTTATACTCGAC+AGG 0.616167 4.2:+11322963 MS.gene030821:CDS
CCGGCAGAAGAGGAAGGTGT+GGG 0.619763 4.2:+11323554 MS.gene030821:CDS
TCCACGTGGAAGTGTTCGTG+TGG 0.623338 4.2:+11323428 MS.gene030821:CDS
ACCACCTGTCGAGTATAACT+CGG 0.632991 4.2:-11322967 None:intergenic
ATGAAGCGTTACGTAGCGTG+AGG 0.636493 4.2:+11323180 MS.gene030821:CDS
AATTGTGGAACTCGACGCAG+TGG 0.638379 4.2:+11323049 MS.gene030821:CDS
TTTCTCCTTCCTAGAAAACG+TGG 0.641293 4.2:-11323453 None:intergenic
AATTGTTTGGACACGTGGAG+CGG 0.644804 4.2:+11323474 MS.gene030821:CDS
GTTTGAAGGACACTCGCCGG+CGG 0.649562 4.2:+11323496 MS.gene030821:CDS
ACACGTGCGATCGGTGTCGG+AGG 0.660805 4.2:+11323348 MS.gene030821:CDS
AGAGAAAGGAAAATCAATGA+CGG 0.662591 4.2:+11323526 MS.gene030821:CDS
TGAAGCGTTACGTAGCGTGA+GGG 0.667496 4.2:+11323181 MS.gene030821:CDS
GAAAGGAAAATCAATGACGG+CGG 0.669060 4.2:+11323529 MS.gene030821:CDS
ACCGAGTTATACTCGACAGG+TGG 0.698259 4.2:+11322966 MS.gene030821:CDS
AGTGTAGGGGAGAGTCCACG+TGG 0.705085 4.2:+11323414 MS.gene030821:CDS
GATGACTTGACGAATTGTGG+AGG 0.731309 4.2:-11322889 None:intergenic
AGTCACGTGAAACAGTGTAG+GGG 0.737402 4.2:+11323401 MS.gene030821:CDS
TCCACACGAACACTTCCACG+TGG 0.747159 4.2:-11323429 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATGATTTGGATAAATTTT+GGG + chr4.2:11323631-11323650 MS.gene030821:CDS 20.0%
!!! TTGATGATTTGGATAAATTT+TGG + chr4.2:11323630-11323649 MS.gene030821:CDS 20.0%
AAATCATCAAAGAAACCTTC+CGG - chr4.2:11323620-11323639 None:intergenic 30.0%
AGAGAAAGGAAAATCAATGA+CGG + chr4.2:11323526-11323545 MS.gene030821:CDS 30.0%
TAACTACCATTCCAAAATTG+TGG + chr4.2:11323034-11323053 MS.gene030821:CDS 30.0%
TTGGAATGGTAGTTATGAAT+GGG - chr4.2:11323029-11323048 None:intergenic 30.0%
! TGTGTTTGTTTGAATGGATT+GGG - chr4.2:11322826-11322845 None:intergenic 30.0%
! TTTGGAATGGTAGTTATGAA+TGG - chr4.2:11323030-11323049 None:intergenic 30.0%
!!! AGTGAGTCTAAGTTTTGTTT+GGG - chr4.2:11322855-11322874 None:intergenic 30.0%
CAATTACATTGACGATGACA+TGG + chr4.2:11322998-11323017 MS.gene030821:CDS 35.0%
CATGTCATCGTCAATGTAAT+TGG - chr4.2:11323000-11323019 None:intergenic 35.0%
CTGTGTTTGTTTGAATGGAT+TGG - chr4.2:11322827-11322846 None:intergenic 35.0%
GAAGTTCAATCCGTTGAAAT+CGG + chr4.2:11323277-11323296 MS.gene030821:CDS 35.0%
GACAATGACTTCTCTTGAAA+TGG - chr4.2:11323319-11323338 None:intergenic 35.0%
TCTAGGAAGGAGAAATTGTT+TGG + chr4.2:11323461-11323480 MS.gene030821:CDS 35.0%
TTACGTTTGCAACCTTCATA+AGG - chr4.2:11323245-11323264 None:intergenic 35.0%
! CGATTTTCTTGTCCTTATGA+AGG + chr4.2:11323230-11323249 MS.gene030821:CDS 35.0%
! GGAAGGTTTCTTTGATGATT+TGG + chr4.2:11323619-11323638 MS.gene030821:CDS 35.0%
! GGAGGAATTGTTATTGTTTC+TGG - chr4.2:11322945-11322964 None:intergenic 35.0%
!! AAACAGAACACCGATTTCAA+CGG - chr4.2:11323290-11323309 None:intergenic 35.0%
!! TGTTATTGTTTCTGGACAAG+TGG - chr4.2:11322937-11322956 None:intergenic 35.0%
!!! GAGTGAGTCTAAGTTTTGTT+TGG - chr4.2:11322856-11322875 None:intergenic 35.0%
!!! GTGAGTCTAAGTTTTGTTTG+GGG - chr4.2:11322854-11322873 None:intergenic 35.0%
ATGAAGGTTGCAAACGTAAC+AGG + chr4.2:11323246-11323265 MS.gene030821:CDS 40.0%
GAAAGGAAAATCAATGACGG+CGG + chr4.2:11323529-11323548 MS.gene030821:CDS 40.0%
GACGAAGGAAAATGATTGCA+TGG + chr4.2:11323586-11323605 MS.gene030821:CDS 40.0%
GAGGACTGTGTTTGTTTGAA+TGG - chr4.2:11322832-11322851 None:intergenic 40.0%
GATGATGACTTGACGAATTG+TGG - chr4.2:11322895-11322914 None:intergenic 40.0%
TGATTGCATGGATACGTTAC+CGG + chr4.2:11323598-11323617 MS.gene030821:CDS 40.0%
TTTCTCCTTCCTAGAAAACG+TGG - chr4.2:11323456-11323475 None:intergenic 40.0%
! AATTGTGGAGGAGATTTGGT+TGG - chr4.2:11322880-11322899 None:intergenic 40.0%
! TGTGGGTAGATTTTTGACGA+AGG + chr4.2:11323571-11323590 MS.gene030821:CDS 40.0%
!! CGAGTTCCACAATTTTGGAA+TGG - chr4.2:11323043-11323062 None:intergenic 40.0%
!!! AGTCTAAGTTTTGTTTGGGG+AGG - chr4.2:11322851-11322870 None:intergenic 40.0%
AATTGTTTGGACACGTGGAG+CGG + chr4.2:11323474-11323493 MS.gene030821:CDS 45.0%
ACCACCTGTCGAGTATAACT+CGG - chr4.2:11322970-11322989 None:intergenic 45.0%
AGAGTCACGTGAAACAGTGT+AGG + chr4.2:11323399-11323418 MS.gene030821:CDS 45.0%
AGTCACGTGAAACAGTGTAG+GGG + chr4.2:11323401-11323420 MS.gene030821:CDS 45.0%
GACGAATTGTGGAGGAGATT+TGG - chr4.2:11322884-11322903 None:intergenic 45.0%
GAGTCACGTGAAACAGTGTA+GGG + chr4.2:11323400-11323419 MS.gene030821:CDS 45.0%
GATGACTTGACGAATTGTGG+AGG - chr4.2:11322892-11322911 None:intergenic 45.0%
GGAAAAGCAAGCGCGTTTAA+CGG + chr4.2:11323202-11323221 MS.gene030821:CDS 45.0%
GGAGAAATTGTTTGGACACG+TGG + chr4.2:11323469-11323488 MS.gene030821:CDS 45.0%
TTCCACTTCTGCGAGATTTG+CGG + chr4.2:11323089-11323108 MS.gene030821:CDS 45.0%
! TGCGTCGAGTTCCACAATTT+TGG - chr4.2:11323048-11323067 None:intergenic 45.0%
!! TGGAACCACGTTTTCTAGGA+AGG + chr4.2:11323448-11323467 MS.gene030821:CDS 45.0%
AATTGTGGAACTCGACGCAG+TGG + chr4.2:11323049-11323068 MS.gene030821:CDS 50.0%
ACCGAGTTATACTCGACAGG+TGG + chr4.2:11322966-11322985 MS.gene030821:CDS 50.0%
CCAACCGAGTTATACTCGAC+AGG + chr4.2:11322963-11322982 MS.gene030821:CDS 50.0%
CCTGTCGAGTATAACTCGGT+TGG - chr4.2:11322966-11322985 None:intergenic 50.0%
CCTTTCTCTTCAACAACCGC+CGG - chr4.2:11323515-11323534 None:intergenic 50.0%
CGAAAACTCACACGTGCGAT+CGG + chr4.2:11323339-11323358 MS.gene030821:CDS 50.0%
GTCGAGTATAACTCGGTTGG+AGG - chr4.2:11322963-11322982 None:intergenic 50.0%
TCCACTTCTGCGAGATTTGC+GGG + chr4.2:11323090-11323109 MS.gene030821:CDS 50.0%
TGCATGGATACGTTACCGGA+AGG + chr4.2:11323602-11323621 MS.gene030821:CDS 50.0%
TTCTGCGAGATTTGCGGGAA+AGG + chr4.2:11323095-11323114 MS.gene030821:CDS 50.0%
! ATGAAGCGTTACGTAGCGTG+AGG + chr4.2:11323180-11323199 MS.gene030821:CDS 50.0%
! CGATCGCACGTGTGAGTTTT+CGG - chr4.2:11323341-11323360 None:intergenic 50.0%
! CGTGTGGAACCACGTTTTCT+AGG + chr4.2:11323444-11323463 MS.gene030821:CDS 50.0%
! GAAGAGTTTTGCGGTGGTGT+CGG + chr4.2:11323370-11323389 MS.gene030821:CDS 50.0%
! GTGTCGGAGGAAGAGTTTTG+CGG + chr4.2:11323361-11323380 MS.gene030821:CDS 50.0%
! TGAAGCGTTACGTAGCGTGA+GGG + chr4.2:11323181-11323200 MS.gene030821:CDS 50.0%
AAAATCAATGACGGCGGCGC+CGG + chr4.2:11323535-11323554 MS.gene030821:CDS 55.0%
CCGGCGGTTGTTGAAGAGAA+AGG + chr4.2:11323512-11323531 MS.gene030821:CDS 55.0%
TCCACACGAACACTTCCACG+TGG - chr4.2:11323432-11323451 None:intergenic 55.0%
TCCCGCAAATCTCGCAGAAG+TGG - chr4.2:11323094-11323113 None:intergenic 55.0%
! TCGGAGGAAGAGTTTTGCGG+TGG + chr4.2:11323364-11323383 MS.gene030821:CDS 55.0%
!! TCCACGTGGAAGTGTTCGTG+TGG + chr4.2:11323428-11323447 MS.gene030821:CDS 55.0%
AGTGTAGGGGAGAGTCCACG+TGG + chr4.2:11323414-11323433 MS.gene030821:CDS 60.0%
CCCACACCTTCCTCTTCTGC+CGG - chr4.2:11323557-11323576 None:intergenic 60.0%
CTCACACGTGCGATCGGTGT+CGG + chr4.2:11323345-11323364 MS.gene030821:CDS 60.0%
GCGGTTTGAAGGACACTCGC+CGG + chr4.2:11323493-11323512 MS.gene030821:CDS 60.0%
GGACACGTGGAGCGGTTTGA+AGG + chr4.2:11323482-11323501 MS.gene030821:CDS 60.0%
GTTTGAAGGACACTCGCCGG+CGG + chr4.2:11323496-11323515 MS.gene030821:CDS 60.0%
! CCGGCAGAAGAGGAAGGTGT+GGG + chr4.2:11323554-11323573 MS.gene030821:CDS 60.0%
CGTATGCACATGCGCGCGCA+CGG + chr4.2:11323140-11323159 MS.gene030821:CDS 65.0%
GCCGGCAGAAGAGGAAGGTG+TGG + chr4.2:11323553-11323572 MS.gene030821:CDS 65.0%
!! ACACGTGCGATCGGTGTCGG+AGG + chr4.2:11323348-11323367 MS.gene030821:CDS 65.0%
GCGCGCGCATGTGCATACGC+AGG - chr4.2:11323139-11323158 None:intergenic 70.0%
!! GCGGCGCCGGCAGAAGAGGA+AGG + chr4.2:11323548-11323567 MS.gene030821:CDS 75.0%
!!! GACGGCGGCGCCGGCAGAAG+AGG + chr4.2:11323544-11323563 MS.gene030821:CDS 80.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 11322798 11323658 11322798 ID=MS.gene030821
chr4.2 mRNA 11322798 11323658 11322798 ID=MS.gene030821.t1;Parent=MS.gene030821
chr4.2 exon 11322798 11323658 11322798 ID=MS.gene030821.t1.exon1;Parent=MS.gene030821.t1
chr4.2 CDS 11322798 11323658 11322798 ID=cds.MS.gene030821.t1;Parent=MS.gene030821.t1
Gene Sequence

>MS.gene030821

ATGGATTCTATTCAAAGCTTCATATCCCAATCCATTCAAACAAACACAGTCCTCCCCAAACAAAACTTAGACTCACTCTCCAACCAAATCTCCTCCACAATTCGTCAAGTCATCATCAACGCAACTGCTCTTCTCGCCACTTGTCCAGAAACAATAACAATTCCTCCAACCGAGTTATACTCGACAGGTGGTGAGAAAACCAATTACATTGACGATGACATGGCAAATCCCATTCATAACTACCATTCCAAAATTGTGGAACTCGACGCAGTGGAACTGCTTGCGAAGCACTTCCACTTCTGCGAGATTTGCGGGAAAGGTTTCACGCGCGATGCAAACCTGCGTATGCACATGCGCGCGCACGGAGAACAGTTCAAGACACATGAAGCGTTACGTAGCGTGAGGGAAAAGCAAGCGCGTTTAACGGCGACGCGATTTTCTTGTCCTTATGAAGGTTGCAAACGTAACAGGTTACACAAGAAGTTCAATCCGTTGAAATCGGTGTTCTGTTTGAAGAACCATTTCAAGAGAAGTCATTGTCCGAAAACTCACACGTGCGATCGGTGTCGGAGGAAGAGTTTTGCGGTGGTGTCGGATTTGAAGAGTCACGTGAAACAGTGTAGGGGAGAGTCCACGTGGAAGTGTTCGTGTGGAACCACGTTTTCTAGGAAGGAGAAATTGTTTGGACACGTGGAGCGGTTTGAAGGACACTCGCCGGCGGTTGTTGAAGAGAAAGGAAAATCAATGACGGCGGCGCCGGCAGAAGAGGAAGGTGTGGGTAGATTTTTGACGAAGGAAAATGATTGCATGGATACGTTACCGGAAGGTTTCTTTGATGATTTGGATAAATTTTGGGTTTGA
Protein sequence

>MS.gene030821.t1

MDSIQSFISQSIQTNTVLPKQNLDSLSNQISSTIRQVIINATALLATCPETITIPPTELYSTGGEKTNYIDDDMANPIHNYHSKIVELDAVELLAKHFHFCEICGKGFTRDANLRMHMRAHGEQFKTHEALRSVREKQARLTATRFSCPYEGCKRNRLHKKFNPLKSVFCLKNHFKRSHCPKTHTCDRCRRKSFAVVSDLKSHVKQCRGESTWKCSCGTTFSRKEKLFGHVERFEGHSPAVVEEKGKSMTAAPAEEEGVGRFLTKENDCMDTLPEGFFDDLDKFWV