AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030822

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030822.t1 MTR_8g017210 33.929 168 96 6 109 276 75 227 3.20e-22 97.1
MS.gene030822.t1 MTR_2g093960 31.633 196 119 6 109 304 45 225 4.05e-22 95.9
MS.gene030822.t1 MTR_4g059870 33.721 172 99 6 109 280 51 207 1.22e-21 95.1
MS.gene030822.t1 MTR_1g093095 36.986 146 86 5 127 269 117 259 3.61e-21 91.7
MS.gene030822.t1 MTR_2g099990 32.370 173 102 6 109 281 59 216 1.34e-20 92.0
MS.gene030822.t1 MTR_2g090745 33.333 162 93 6 95 256 10 156 1.81e-19 88.6
MS.gene030822.t1 MTR_1g112270 32.450 151 91 5 106 256 54 193 2.07e-19 89.0
MS.gene030822.t1 MTR_1g112270 32.432 148 89 5 109 256 68 204 3.65e-19 88.2
MS.gene030822.t1 MTR_2g099990 33.333 162 93 6 120 281 1 147 5.56e-19 87.0
MS.gene030822.t1 MTR_1g016010 35.811 148 85 5 109 256 54 191 7.62e-19 87.0
MS.gene030822.t1 MTR_1g094115 33.775 151 89 5 106 256 57 196 1.00e-18 87.0
MS.gene030822.t1 MTR_1g094115 35.878 131 73 5 126 256 60 179 6.73e-17 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030822.t1 AT1G34370 56.805 169 66 3 110 273 19 185 1.29e-64 205
MS.gene030822.t1 AT1G34370 56.805 169 66 3 110 273 229 395 1.04e-63 209
MS.gene030822.t1 AT1G34370 56.805 169 66 3 110 273 229 395 1.04e-63 209
MS.gene030822.t1 AT5G22890 39.241 316 135 9 17 276 57 371 5.11e-63 204
MS.gene030822.t1 AT1G08290 39.007 141 80 5 127 265 182 318 4.28e-22 95.1
MS.gene030822.t1 AT5G66730 36.486 148 83 5 109 256 45 181 4.57e-22 96.7
MS.gene030822.t1 AT5G44160 35.135 148 85 5 109 256 50 186 5.55e-22 96.3
MS.gene030822.t1 AT5G44160 35.135 148 85 5 109 256 11 147 6.83e-22 95.5
MS.gene030822.t1 AT5G60470 34.615 156 90 5 101 256 51 194 7.00e-22 95.9
MS.gene030822.t1 AT1G13290 37.415 147 87 4 127 271 103 246 7.14e-22 94.0
MS.gene030822.t1 AT5G60470 34.615 156 90 5 101 256 47 190 7.47e-22 95.9
MS.gene030822.t1 AT5G60470 34.228 149 88 4 108 256 47 185 7.91e-22 95.5
MS.gene030822.t1 AT3G45260 31.977 172 103 5 109 280 52 209 8.35e-22 95.5
MS.gene030822.t1 AT3G45260 31.977 172 103 5 109 280 52 209 8.35e-22 95.5
MS.gene030822.t1 AT5G03150 35.811 148 85 4 109 256 66 203 1.06e-21 95.5
MS.gene030822.t1 AT1G51220 39.189 148 83 6 127 272 180 322 1.25e-21 94.0
MS.gene030822.t1 AT3G50700 36.471 170 91 7 87 256 31 183 1.92e-21 94.4
MS.gene030822.t1 AT1G03840 35.099 151 87 5 106 256 49 188 2.19e-21 94.7
MS.gene030822.t1 AT1G03840 35.135 148 85 5 109 256 54 190 3.51e-21 94.0
MS.gene030822.t1 AT3G20880 37.107 159 93 6 127 283 258 411 4.84e-21 93.2
MS.gene030822.t1 AT1G55110 32.934 167 98 5 109 275 76 228 1.50e-20 92.0
MS.gene030822.t1 AT1G55110 32.934 167 98 5 109 275 76 228 1.50e-20 92.0
MS.gene030822.t1 AT1G55110 32.934 167 98 5 109 275 76 228 1.50e-20 92.0
MS.gene030822.t1 AT3G13810 35.135 148 86 4 109 256 83 220 5.93e-20 90.5
MS.gene030822.t1 AT3G13810 35.135 148 86 4 109 256 83 220 5.93e-20 90.5
MS.gene030822.t1 AT3G13810 35.135 148 86 4 109 256 78 215 7.47e-20 90.1
MS.gene030822.t1 AT3G13810 35.135 148 86 4 109 256 64 201 8.05e-20 90.1
MS.gene030822.t1 AT3G13810 35.135 148 86 4 109 256 84 221 1.05e-19 89.7
MS.gene030822.t1 AT3G13810 35.135 148 86 4 109 256 70 207 1.18e-19 89.7
MS.gene030822.t1 AT2G02080 30.526 190 111 8 101 286 61 233 1.60e-19 89.4
MS.gene030822.t1 AT2G02080 30.526 190 111 8 101 286 61 233 1.60e-19 89.4
MS.gene030822.t1 AT2G02080 30.526 190 111 8 101 286 61 233 1.60e-19 89.4
MS.gene030822.t1 AT2G02080 30.526 190 111 8 101 286 61 233 1.60e-19 89.4
MS.gene030822.t1 AT1G34790 35.329 167 97 8 118 278 137 298 3.27e-19 86.7
MS.gene030822.t1 AT4G02670 35.811 148 85 5 109 256 68 205 3.52e-19 87.8
MS.gene030822.t1 AT4G02670 35.811 148 85 5 109 256 66 203 3.82e-19 87.4
MS.gene030822.t1 AT2G02070 32.450 151 91 5 106 256 62 201 3.91e-19 88.2
MS.gene030822.t1 AT2G02070 32.450 151 91 5 106 256 62 201 3.91e-19 88.2
MS.gene030822.t1 AT1G14580 32.692 156 92 6 101 256 60 202 6.47e-19 87.4
MS.gene030822.t1 AT1G14580 32.692 156 92 6 101 256 60 202 6.47e-19 87.4
MS.gene030822.t1 AT1G14580 32.692 156 92 6 101 256 74 216 6.65e-19 87.4
MS.gene030822.t1 AT3G57670 35.862 145 86 6 127 269 219 358 3.30e-18 84.7
MS.gene030822.t1 AT2G02080 30.409 171 100 7 120 286 1 156 2.52e-17 82.4
MS.gene030822.t1 AT2G02080 30.409 171 100 7 120 286 1 156 2.52e-17 82.4
MS.gene030822.t1 AT1G25250 33.750 160 96 5 98 256 12 162 2.58e-17 82.0
MS.gene030822.t1 AT1G25250 35.570 149 86 5 109 256 46 185 2.77e-17 82.0
MS.gene030822.t1 AT2G01940 35.762 151 82 6 109 256 57 195 3.32e-17 82.0
MS.gene030822.t1 AT1G68130 35.570 149 85 5 109 256 54 192 7.84e-17 80.9
MS.gene030822.t1 AT2G01940 35.252 139 75 6 109 244 57 183 3.29e-14 73.2

Find 72 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGATTTGGATAAATTT+TGG 0.104736 4.2:+11349031 MS.gene030822:CDS
GGAGGAATTGTTATTGTTTC+TGG 0.118268 4.2:-11348343 None:intergenic
GGAAGGTTTCTTTGATGATT+TGG 0.263746 4.2:+11349020 MS.gene030822:CDS
CATGTCATCGTCAATGTAAT+TGG 0.286361 4.2:-11348398 None:intergenic
TCCACTTCTGCGAGATTTGC+GGG 0.292814 4.2:+11348491 MS.gene030822:CDS
TGCGTCGAGTTCCACAATTT+TGG 0.303992 4.2:-11348446 None:intergenic
ATGAAGGTTGCAAACGTAAC+AGG 0.321705 4.2:+11348647 MS.gene030822:CDS
GACAATGACTTCTCTTGAAA+TGG 0.326614 4.2:-11348717 None:intergenic
TCTAGGAAGGAGAAATTGTT+TGG 0.374626 4.2:+11348862 MS.gene030822:CDS
GACGAATTGTGGAGGAGATT+TGG 0.390719 4.2:-11348282 None:intergenic
AATCCATTTCGGTACTTAGT+TGG 0.394568 4.2:-11348183 None:intergenic
GAGGACTGTGTTTGTTTGAA+TGG 0.398093 4.2:-11348230 None:intergenic
ATCCATTTCGGTACTTAGTT+GGG 0.403084 4.2:-11348182 None:intergenic
TGTGTTTGTTTGAATGGATT+GGG 0.410517 4.2:-11348224 None:intergenic
CTGTGTTTGTTTGAATGGAT+TGG 0.411205 4.2:-11348225 None:intergenic
TGATTGCATGGATACGTTAC+CGG 0.422874 4.2:+11348999 MS.gene030822:CDS
TTTGGAATGGTAGTTATGAA+TGG 0.430613 4.2:-11348428 None:intergenic
GACGGCGGCGCCGGCAGAAG+AGG 0.442327 4.2:+11348945 MS.gene030822:CDS
TTACGTTTGCAACCTTCATA+AGG 0.442930 4.2:-11348643 None:intergenic
GCTTTGAATAGAATCCATTT+CGG 0.442981 4.2:-11348194 None:intergenic
CTCCCAACTAAGTACCGAAA+TGG 0.446469 4.2:+11348180 MS.gene030822:CDS
TTGGAATGGTAGTTATGAAT+GGG 0.447738 4.2:-11348427 None:intergenic
GAAGTTCAATCCGTTGAAAT+CGG 0.453409 4.2:+11348678 MS.gene030822:CDS
GGACACGTGGAGCGGTTTGA+AGG 0.462859 4.2:+11348883 MS.gene030822:CDS
TTCTGCGAGATTTGCGGGAA+AGG 0.464202 4.2:+11348496 MS.gene030822:CDS
TTCCACTTCTGCGAGATTTG+CGG 0.470603 4.2:+11348490 MS.gene030822:CDS
AATTGTGGAGGAGATTTGGT+TGG 0.477694 4.2:-11348278 None:intergenic
TAACTACCATTCCAAAATTG+TGG 0.494523 4.2:+11348435 MS.gene030822:CDS
GGAAAAGCAAGCGCGTTTAA+CGG 0.496000 4.2:+11348603 MS.gene030822:CDS
AAAATCAATGACGGCGGCGC+CGG 0.497008 4.2:+11348936 MS.gene030822:CDS
CCCACACCTTCCTCTTCTGC+CGG 0.506138 4.2:-11348955 None:intergenic
TTTCGGTACTTAGTTGGGAG+AGG 0.518556 4.2:-11348177 None:intergenic
GTCGAGTATAACTCGGTTGG+AGG 0.524381 4.2:-11348361 None:intergenic
AAATCATCAAAGAAACCTTC+CGG 0.527715 4.2:-11349018 None:intergenic
CCGGCGGTTGTTGAAGAGAA+AGG 0.528093 4.2:+11348913 MS.gene030822:CDS
GACGAAGGAAAATGATTGCA+TGG 0.537494 4.2:+11348987 MS.gene030822:CDS
TCCCGCAAATCTCGCAGAAG+TGG 0.537900 4.2:-11348492 None:intergenic
AAACAGAACACCGATTTCAA+CGG 0.538702 4.2:-11348688 None:intergenic
GAGTCACGTGAAACAGTGTA+GGG 0.546406 4.2:+11348801 MS.gene030822:CDS
GATGATGACTTGACGAATTG+TGG 0.554147 4.2:-11348293 None:intergenic
TGTTATTGTTTCTGGACAAG+TGG 0.555781 4.2:-11348335 None:intergenic
GGAGAAATTGTTTGGACACG+TGG 0.562238 4.2:+11348870 MS.gene030822:CDS
CAATTACATTGACGATGACA+TGG 0.570490 4.2:+11348399 MS.gene030822:CDS
CGAAAACTCACACGTGCGAT+CGG 0.572334 4.2:+11348740 MS.gene030822:CDS
CTCACACGTGCGATCGGTGT+CGG 0.577837 4.2:+11348746 MS.gene030822:CDS
CGTATGCACATGCGCGCGCA+CGG 0.585406 4.2:+11348541 MS.gene030822:CDS
CCTTTCTCTTCAACAACCGC+CGG 0.591632 4.2:-11348913 None:intergenic
TGCATGGATACGTTACCGGA+AGG 0.593308 4.2:+11349003 MS.gene030822:CDS
GCCGGCAGAAGAGGAAGGTG+TGG 0.596313 4.2:+11348954 MS.gene030822:CDS
AGAGTCACGTGAAACAGTGT+AGG 0.598901 4.2:+11348800 MS.gene030822:CDS
GCGGCGCCGGCAGAAGAGGA+AGG 0.609998 4.2:+11348949 MS.gene030822:CDS
GCGCGCGCATGTGCATACGC+AGG 0.610043 4.2:-11348537 None:intergenic
GCGGTTTGAAGGACACTCGC+CGG 0.611639 4.2:+11348894 MS.gene030822:CDS
CCTGTCGAGTATAACTCGGT+TGG 0.613205 4.2:-11348364 None:intergenic
CCAACCGAGTTATACTCGAC+AGG 0.616167 4.2:+11348364 MS.gene030822:CDS
CCGGCAGAAGAGGAAGGTGT+GGG 0.619763 4.2:+11348955 MS.gene030822:CDS
TCCACGTGGAAGTGTTCGTG+TGG 0.623338 4.2:+11348829 MS.gene030822:CDS
ACCACCTGTCGAGTATAACT+CGG 0.632991 4.2:-11348368 None:intergenic
ATGAAGCGTTACGTAGCGTG+AGG 0.636493 4.2:+11348581 MS.gene030822:CDS
AATTGTGGAACTCGACGCAG+TGG 0.638379 4.2:+11348450 MS.gene030822:CDS
TTTCTCCTTCCTAGAAAACG+TGG 0.641293 4.2:-11348854 None:intergenic
AATTGTTTGGACACGTGGAG+CGG 0.644804 4.2:+11348875 MS.gene030822:CDS
GTTTGAAGGACACTCGCCGG+CGG 0.649562 4.2:+11348897 MS.gene030822:CDS
ACACGTGCGATCGGTGTCGG+AGG 0.660805 4.2:+11348749 MS.gene030822:CDS
AGAGAAAGGAAAATCAATGA+CGG 0.662591 4.2:+11348927 MS.gene030822:CDS
TGAAGCGTTACGTAGCGTGA+GGG 0.667496 4.2:+11348582 MS.gene030822:CDS
GAAAGGAAAATCAATGACGG+CGG 0.669060 4.2:+11348930 MS.gene030822:CDS
ACCGAGTTATACTCGACAGG+TGG 0.698259 4.2:+11348367 MS.gene030822:CDS
AGTGTAGGGGAGAGTCCACG+TGG 0.705085 4.2:+11348815 MS.gene030822:CDS
GATGACTTGACGAATTGTGG+AGG 0.731309 4.2:-11348290 None:intergenic
AGTCACGTGAAACAGTGTAG+GGG 0.737402 4.2:+11348802 MS.gene030822:CDS
TCCACACGAACACTTCCACG+TGG 0.747159 4.2:-11348830 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATGATTTGGATAAATTTT+GGG + chr4.2:11349032-11349051 MS.gene030822:CDS 20.0%
!!! TTGATGATTTGGATAAATTT+TGG + chr4.2:11349031-11349050 MS.gene030822:CDS 20.0%
AAATCATCAAAGAAACCTTC+CGG - chr4.2:11349021-11349040 None:intergenic 30.0%
AGAGAAAGGAAAATCAATGA+CGG + chr4.2:11348927-11348946 MS.gene030822:CDS 30.0%
TAACTACCATTCCAAAATTG+TGG + chr4.2:11348435-11348454 MS.gene030822:CDS 30.0%
TTGGAATGGTAGTTATGAAT+GGG - chr4.2:11348430-11348449 None:intergenic 30.0%
! GCTTTGAATAGAATCCATTT+CGG - chr4.2:11348197-11348216 None:intergenic 30.0%
! TGTGTTTGTTTGAATGGATT+GGG - chr4.2:11348227-11348246 None:intergenic 30.0%
! TTTGGAATGGTAGTTATGAA+TGG - chr4.2:11348431-11348450 None:intergenic 30.0%
!!! AGTGAGTCTAAGTTTTGTTT+GGG - chr4.2:11348256-11348275 None:intergenic 30.0%
AATCCATTTCGGTACTTAGT+TGG - chr4.2:11348186-11348205 None:intergenic 35.0%
ATCCATTTCGGTACTTAGTT+GGG - chr4.2:11348185-11348204 None:intergenic 35.0%
CAATTACATTGACGATGACA+TGG + chr4.2:11348399-11348418 MS.gene030822:CDS 35.0%
CATGTCATCGTCAATGTAAT+TGG - chr4.2:11348401-11348420 None:intergenic 35.0%
CTGTGTTTGTTTGAATGGAT+TGG - chr4.2:11348228-11348247 None:intergenic 35.0%
GAAGTTCAATCCGTTGAAAT+CGG + chr4.2:11348678-11348697 MS.gene030822:CDS 35.0%
GACAATGACTTCTCTTGAAA+TGG - chr4.2:11348720-11348739 None:intergenic 35.0%
TCTAGGAAGGAGAAATTGTT+TGG + chr4.2:11348862-11348881 MS.gene030822:CDS 35.0%
TTACGTTTGCAACCTTCATA+AGG - chr4.2:11348646-11348665 None:intergenic 35.0%
! CGATTTTCTTGTCCTTATGA+AGG + chr4.2:11348631-11348650 MS.gene030822:CDS 35.0%
! GGAAGGTTTCTTTGATGATT+TGG + chr4.2:11349020-11349039 MS.gene030822:CDS 35.0%
! GGAGGAATTGTTATTGTTTC+TGG - chr4.2:11348346-11348365 None:intergenic 35.0%
!! AAACAGAACACCGATTTCAA+CGG - chr4.2:11348691-11348710 None:intergenic 35.0%
!! TGTTATTGTTTCTGGACAAG+TGG - chr4.2:11348338-11348357 None:intergenic 35.0%
!!! GAGTGAGTCTAAGTTTTGTT+TGG - chr4.2:11348257-11348276 None:intergenic 35.0%
!!! GTGAGTCTAAGTTTTGTTTG+GGG - chr4.2:11348255-11348274 None:intergenic 35.0%
ATGAAGGTTGCAAACGTAAC+AGG + chr4.2:11348647-11348666 MS.gene030822:CDS 40.0%
GAAAGGAAAATCAATGACGG+CGG + chr4.2:11348930-11348949 MS.gene030822:CDS 40.0%
GACGAAGGAAAATGATTGCA+TGG + chr4.2:11348987-11349006 MS.gene030822:CDS 40.0%
GAGGACTGTGTTTGTTTGAA+TGG - chr4.2:11348233-11348252 None:intergenic 40.0%
GATGATGACTTGACGAATTG+TGG - chr4.2:11348296-11348315 None:intergenic 40.0%
TGATTGCATGGATACGTTAC+CGG + chr4.2:11348999-11349018 MS.gene030822:CDS 40.0%
TTTCTCCTTCCTAGAAAACG+TGG - chr4.2:11348857-11348876 None:intergenic 40.0%
! AATTGTGGAGGAGATTTGGT+TGG - chr4.2:11348281-11348300 None:intergenic 40.0%
! TGTGGGTAGATTTTTGACGA+AGG + chr4.2:11348972-11348991 MS.gene030822:CDS 40.0%
!! CGAGTTCCACAATTTTGGAA+TGG - chr4.2:11348444-11348463 None:intergenic 40.0%
!! TTAGTTGGGAGAGGTTTTGA+AGG - chr4.2:11348171-11348190 None:intergenic 40.0%
!!! AGTCTAAGTTTTGTTTGGGG+AGG - chr4.2:11348252-11348271 None:intergenic 40.0%
!!! TAGTTGGGAGAGGTTTTGAA+GGG - chr4.2:11348170-11348189 None:intergenic 40.0%
AATTGTTTGGACACGTGGAG+CGG + chr4.2:11348875-11348894 MS.gene030822:CDS 45.0%
ACCACCTGTCGAGTATAACT+CGG - chr4.2:11348371-11348390 None:intergenic 45.0%
AGAGTCACGTGAAACAGTGT+AGG + chr4.2:11348800-11348819 MS.gene030822:CDS 45.0%
AGTCACGTGAAACAGTGTAG+GGG + chr4.2:11348802-11348821 MS.gene030822:CDS 45.0%
GACGAATTGTGGAGGAGATT+TGG - chr4.2:11348285-11348304 None:intergenic 45.0%
GAGTCACGTGAAACAGTGTA+GGG + chr4.2:11348801-11348820 MS.gene030822:CDS 45.0%
GATGACTTGACGAATTGTGG+AGG - chr4.2:11348293-11348312 None:intergenic 45.0%
GGAAAAGCAAGCGCGTTTAA+CGG + chr4.2:11348603-11348622 MS.gene030822:CDS 45.0%
GGAGAAATTGTTTGGACACG+TGG + chr4.2:11348870-11348889 MS.gene030822:CDS 45.0%
TTCCACTTCTGCGAGATTTG+CGG + chr4.2:11348490-11348509 MS.gene030822:CDS 45.0%
TTTCGGTACTTAGTTGGGAG+AGG - chr4.2:11348180-11348199 None:intergenic 45.0%
! TGCGTCGAGTTCCACAATTT+TGG - chr4.2:11348449-11348468 None:intergenic 45.0%
!! CTCCCAACTAAGTACCGAAA+TGG + chr4.2:11348180-11348199 MS.gene030822:CDS 45.0%
!! TGGAACCACGTTTTCTAGGA+AGG + chr4.2:11348849-11348868 MS.gene030822:CDS 45.0%
!!! AGTTGGGAGAGGTTTTGAAG+GGG - chr4.2:11348169-11348188 None:intergenic 45.0%
AATTGTGGAACTCGACGCAG+TGG + chr4.2:11348450-11348469 MS.gene030822:CDS 50.0%
ACCGAGTTATACTCGACAGG+TGG + chr4.2:11348367-11348386 MS.gene030822:CDS 50.0%
CCAACCGAGTTATACTCGAC+AGG + chr4.2:11348364-11348383 MS.gene030822:CDS 50.0%
CCTGTCGAGTATAACTCGGT+TGG - chr4.2:11348367-11348386 None:intergenic 50.0%
CCTTTCTCTTCAACAACCGC+CGG - chr4.2:11348916-11348935 None:intergenic 50.0%
CGAAAACTCACACGTGCGAT+CGG + chr4.2:11348740-11348759 MS.gene030822:CDS 50.0%
GTCGAGTATAACTCGGTTGG+AGG - chr4.2:11348364-11348383 None:intergenic 50.0%
TCCACTTCTGCGAGATTTGC+GGG + chr4.2:11348491-11348510 MS.gene030822:CDS 50.0%
TGCATGGATACGTTACCGGA+AGG + chr4.2:11349003-11349022 MS.gene030822:CDS 50.0%
TTCTGCGAGATTTGCGGGAA+AGG + chr4.2:11348496-11348515 MS.gene030822:CDS 50.0%
! ATGAAGCGTTACGTAGCGTG+AGG + chr4.2:11348581-11348600 MS.gene030822:CDS 50.0%
! CGATCGCACGTGTGAGTTTT+CGG - chr4.2:11348742-11348761 None:intergenic 50.0%
! CGTGTGGAACCACGTTTTCT+AGG + chr4.2:11348845-11348864 MS.gene030822:CDS 50.0%
! GAAGAGTTTTGCGGTGGTGT+CGG + chr4.2:11348771-11348790 MS.gene030822:CDS 50.0%
! GTGTCGGAGGAAGAGTTTTG+CGG + chr4.2:11348762-11348781 MS.gene030822:CDS 50.0%
! TGAAGCGTTACGTAGCGTGA+GGG + chr4.2:11348582-11348601 MS.gene030822:CDS 50.0%
AAAATCAATGACGGCGGCGC+CGG + chr4.2:11348936-11348955 MS.gene030822:CDS 55.0%
CCGGCGGTTGTTGAAGAGAA+AGG + chr4.2:11348913-11348932 MS.gene030822:CDS 55.0%
TCCACACGAACACTTCCACG+TGG - chr4.2:11348833-11348852 None:intergenic 55.0%
TCCCGCAAATCTCGCAGAAG+TGG - chr4.2:11348495-11348514 None:intergenic 55.0%
! TCGGAGGAAGAGTTTTGCGG+TGG + chr4.2:11348765-11348784 MS.gene030822:CDS 55.0%
!! TCCACGTGGAAGTGTTCGTG+TGG + chr4.2:11348829-11348848 MS.gene030822:CDS 55.0%
AGTGTAGGGGAGAGTCCACG+TGG + chr4.2:11348815-11348834 MS.gene030822:CDS 60.0%
CCCACACCTTCCTCTTCTGC+CGG - chr4.2:11348958-11348977 None:intergenic 60.0%
CTCACACGTGCGATCGGTGT+CGG + chr4.2:11348746-11348765 MS.gene030822:CDS 60.0%
GCGGTTTGAAGGACACTCGC+CGG + chr4.2:11348894-11348913 MS.gene030822:CDS 60.0%
GGACACGTGGAGCGGTTTGA+AGG + chr4.2:11348883-11348902 MS.gene030822:CDS 60.0%
GTTTGAAGGACACTCGCCGG+CGG + chr4.2:11348897-11348916 MS.gene030822:CDS 60.0%
! CCGGCAGAAGAGGAAGGTGT+GGG + chr4.2:11348955-11348974 MS.gene030822:CDS 60.0%
CGTATGCACATGCGCGCGCA+CGG + chr4.2:11348541-11348560 MS.gene030822:CDS 65.0%
GCCGGCAGAAGAGGAAGGTG+TGG + chr4.2:11348954-11348973 MS.gene030822:CDS 65.0%
!! ACACGTGCGATCGGTGTCGG+AGG + chr4.2:11348749-11348768 MS.gene030822:CDS 65.0%
GCGCGCGCATGTGCATACGC+AGG - chr4.2:11348540-11348559 None:intergenic 70.0%
!! GCGGCGCCGGCAGAAGAGGA+AGG + chr4.2:11348949-11348968 MS.gene030822:CDS 75.0%
!!! GACGGCGGCGCCGGCAGAAG+AGG + chr4.2:11348945-11348964 MS.gene030822:CDS 80.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 11348121 11349059 11348121 ID=MS.gene030822
chr4.2 mRNA 11348121 11349059 11348121 ID=MS.gene030822.t1;Parent=MS.gene030822
chr4.2 exon 11348121 11349059 11348121 ID=MS.gene030822.t1.exon1;Parent=MS.gene030822.t1
chr4.2 CDS 11348121 11349059 11348121 ID=cds.MS.gene030822.t1;Parent=MS.gene030822.t1
Gene Sequence

>MS.gene030822

ATGCAAAATCTCACTGAAATTACTCATCAAACAAATGCAAATATTCCCCTTCAAAACCTCTCCCAACTAAGTACCGAAATGGATTCTATTCAAAGCTTCATATCCCAATCCATTCAAACAAACACAGTCCTCCCCAAACAAAACTTAGACTCACTCTCCAACCAAATCTCCTCCACAATTCGTCAAGTCATCATCAACGCAACTGCTCTTCTCGCCACTTGTCCAGAAACAATAACAATTCCTCCAACCGAGTTATACTCGACAGGTGGTGAGAAAACCAATTACATTGACGATGACATGGCAAATCCCATTCATAACTACCATTCCAAAATTGTGGAACTCGACGCAGTGGAACTGCTTGCGAAGCACTTCCACTTCTGCGAGATTTGCGGGAAAGGTTTCACGCGCGATGCAAACCTGCGTATGCACATGCGCGCGCACGGAGAACAGTTCAAGACACATGAAGCGTTACGTAGCGTGAGGGAAAAGCAAGCGCGTTTAACGGCGACGCGATTTTCTTGTCCTTATGAAGGTTGCAAACGTAACAGGTTACACAAGAAGTTCAATCCGTTGAAATCGGTGTTCTGTTTGAAGAACCATTTCAAGAGAAGTCATTGTCCGAAAACTCACACGTGCGATCGGTGTCGGAGGAAGAGTTTTGCGGTGGTGTCGGATTTGAAGAGTCACGTGAAACAGTGTAGGGGAGAGTCCACGTGGAAGTGTTCGTGTGGAACCACGTTTTCTAGGAAGGAGAAATTGTTTGGACACGTGGAGCGGTTTGAAGGACACTCGCCGGCGGTTGTTGAAGAGAAAGGAAAATCAATGACGGCGGCGCCGGCAGAAGAGGAAGGTGTGGGTAGATTTTTGACGAAGGAAAATGATTGCATGGATACGTTACCGGAAGGTTTCTTTGATGATTTGGATAAATTTTGGGTTTGA
Protein sequence

>MS.gene030822.t1

MQNLTEITHQTNANIPLQNLSQLSTEMDSIQSFISQSIQTNTVLPKQNLDSLSNQISSTIRQVIINATALLATCPETITIPPTELYSTGGEKTNYIDDDMANPIHNYHSKIVELDAVELLAKHFHFCEICGKGFTRDANLRMHMRAHGEQFKTHEALRSVREKQARLTATRFSCPYEGCKRNRLHKKFNPLKSVFCLKNHFKRSHCPKTHTCDRCRRKSFAVVSDLKSHVKQCRGESTWKCSCGTTFSRKEKLFGHVERFEGHSPAVVEEKGKSMTAAPAEEEGVGRFLTKENDCMDTLPEGFFDDLDKFWV