Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030917.t1 | AET04470.2 | 79.7 | 153 | 26 | 3 | 14 | 161 | 6 | 158 | 3.40E-55 | 224.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030917.t1 | Q8W4H1 | 31.5 | 213 | 87 | 6 | 1 | 155 | 1 | 212 | 8.9e-12 | 71.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030917.t1 | G7L9J6 | 79.7 | 153 | 26 | 3 | 14 | 161 | 6 | 158 | 2.4e-55 | 224.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene030917.t1 | TF | C2C2-GATA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030917.t1 | MTR_8g089170 | 87.417 | 151 | 16 | 1 | 14 | 161 | 6 | 156 | 1.83e-87 | 253 |
| MS.gene030917.t1 | MTR_8g089130 | 79.739 | 153 | 26 | 3 | 14 | 161 | 6 | 158 | 7.66e-79 | 231 |
| MS.gene030917.t1 | MTR_8g089145 | 86.765 | 68 | 9 | 0 | 14 | 81 | 6 | 73 | 3.37e-38 | 125 |
| MS.gene030917.t1 | MTR_1g089830 | 37.584 | 149 | 61 | 4 | 15 | 160 | 6 | 125 | 1.77e-21 | 85.1 |
| MS.gene030917.t1 | MTR_1g045040 | 38.356 | 146 | 69 | 2 | 15 | 160 | 6 | 130 | 4.42e-21 | 83.6 |
| MS.gene030917.t1 | MTR_4g028990 | 48.052 | 77 | 35 | 1 | 89 | 160 | 20 | 96 | 5.39e-16 | 69.7 |
| MS.gene030917.t1 | MTR_5g013370 | 60.000 | 45 | 18 | 0 | 1 | 45 | 1 | 45 | 7.89e-15 | 71.2 |
| MS.gene030917.t1 | MTR_5g013370 | 60.000 | 45 | 18 | 0 | 1 | 45 | 1 | 45 | 8.51e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030917.t1 | AT5G47140 | 62.222 | 45 | 17 | 0 | 1 | 45 | 1 | 45 | 1.55e-14 | 70.5 |
| MS.gene030917.t1 | AT4G17570 | 60.000 | 45 | 18 | 0 | 1 | 45 | 1 | 45 | 4.41e-14 | 68.9 |
| MS.gene030917.t1 | AT4G17570 | 60.000 | 45 | 18 | 0 | 1 | 45 | 1 | 45 | 4.57e-14 | 68.9 |
Find 35 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAAACTGGCTTCTCTTC+TGG | 0.255261 | 4.3:+11217269 | None:intergenic |
| TCGAACAATAAGGCCTCTTC+TGG | 0.271838 | 4.3:+11216820 | None:intergenic |
| TTCATACCTTCAAATGAAAT+TGG | 0.274802 | 4.3:-11216784 | MS.gene030917:CDS |
| CTTCAAGATTTCCCCAGTTT+TGG | 0.287698 | 4.3:+11217225 | None:intergenic |
| GATGTTTCTGATTCAGATAA+TGG | 0.318368 | 4.3:-11217110 | MS.gene030917:intron |
| ATCCTCAAACTACGCCTCTT+TGG | 0.326587 | 4.3:+11216922 | None:intergenic |
| CTGTTCGTAACAAGTTCTTT+TGG | 0.340372 | 4.3:+11217179 | None:intergenic |
| TCTGGTCCCTGGCGCCATGC+TGG | 0.378150 | 4.3:+11217287 | None:intergenic |
| CCAAGACCAATTTCATTTGA+AGG | 0.378872 | 4.3:+11216778 | None:intergenic |
| CCTTCAAATGAAATTGGTCT+TGG | 0.383519 | 4.3:-11216778 | MS.gene030917:CDS |
| GTGGACTAAGATACCAAAAC+TGG | 0.405891 | 4.3:-11217238 | MS.gene030917:CDS |
| CCACATGCATTGCATAAAAC+TGG | 0.410323 | 4.3:+11217257 | None:intergenic |
| AGCAACTCCAGCATGGCGCC+AGG | 0.413779 | 4.3:-11217294 | MS.gene030917:CDS |
| CTCCAAAGAGGCGTAGTTTG+AGG | 0.425603 | 4.3:-11216924 | MS.gene030917:CDS |
| CGAACAATAAGGCCTCTTCT+GGG | 0.435884 | 4.3:+11216821 | None:intergenic |
| CTGGCTTCTCTTCTGGTCCC+TGG | 0.474139 | 4.3:+11217276 | None:intergenic |
| TCTTCTGGGGATGACTCATC+TGG | 0.478086 | 4.3:+11216835 | None:intergenic |
| GAGGATTATCAATCAGAAGA+TGG | 0.496715 | 4.3:-11216905 | MS.gene030917:CDS |
| TTCATATTCATGCAAGGCTA+CGG | 0.526602 | 4.3:-11216950 | MS.gene030917:CDS |
| ATCTGAATCAGAAACATCAA+TGG | 0.539843 | 4.3:+11217115 | None:intergenic |
| TTTGCTCCGCAATGGTTGCA+TGG | 0.543643 | 4.3:+11220590 | None:intergenic |
| TTCTACATAGAAGAACCGTC+TGG | 0.563851 | 4.3:+11216739 | None:intergenic |
| GCAACTCCAGCATGGCGCCA+GGG | 0.572723 | 4.3:-11217293 | MS.gene030917:CDS |
| TTTGGAAAACAACGTTTGAG+AGG | 0.575726 | 4.3:+11217197 | None:intergenic |
| ACTTACACTTTGCTCCGCAA+TGG | 0.578043 | 4.3:+11220582 | None:intergenic |
| AGATGAGTCATCCCCAGAAG+AGG | 0.591895 | 4.3:-11216833 | MS.gene030917:CDS |
| GCAGTTCTTCTTAAACCAGA+CGG | 0.605128 | 4.3:-11216754 | MS.gene030917:CDS |
| AAAAGATTCATATTCATGCA+AGG | 0.612439 | 4.3:-11216956 | MS.gene030917:CDS |
| TGGACTAAGATACCAAAACT+GGG | 0.618651 | 4.3:-11217237 | MS.gene030917:CDS |
| GAACAATAAGGCCTCTTCTG+GGG | 0.622845 | 4.3:+11216822 | None:intergenic |
| AAAGAACTTGTTACGAACAG+TGG | 0.644687 | 4.3:-11217176 | MS.gene030917:CDS |
| CGTGGTCCATGCAACCATTG+CGG | 0.655545 | 4.3:-11220596 | MS.gene030917:CDS |
| AGGCTACGGTCTCTCCAAAG+AGG | 0.659563 | 4.3:-11216936 | MS.gene030917:CDS |
| GACACGGATATGAAGAAACG+TGG | 0.730195 | 4.3:-11220614 | None:intergenic |
| GGACTAAGATACCAAAACTG+GGG | 0.731002 | 4.3:-11217236 | MS.gene030917:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTATTATTATTATTT+TGG | - | chr4.3:11217398-11217417 | MS.gene030917:intron | 0.0% |
| !! | TAAATCATTTGAATTAATTA+AGG | - | chr4.3:11219917-11219936 | MS.gene030917:intron | 10.0% |
| !! | TTAATAAAAAAATTAGGAAA+GGG | + | chr4.3:11217038-11217057 | None:intergenic | 10.0% |
| !! | TTTAATAAAAAAATTAGGAA+AGG | + | chr4.3:11217039-11217058 | None:intergenic | 10.0% |
| !!! | AAATACATTAATTTTGTTTT+TGG | + | chr4.3:11218057-11218076 | None:intergenic | 10.0% |
| !!! | AATATTATTTTTTATAATCG+GGG | + | chr4.3:11217258-11217277 | None:intergenic | 10.0% |
| !!! | AATTAAAGACTTTATTTAAT+TGG | - | chr4.3:11219757-11219776 | MS.gene030917:intron | 10.0% |
| !!! | AATTAAGTTTTTTTTTTTGA+GGG | - | chr4.3:11219706-11219725 | MS.gene030917:intron | 10.0% |
| !!! | GAATATTATTTTTTATAATC+GGG | + | chr4.3:11217259-11217278 | None:intergenic | 10.0% |
| !!! | GGAATATTATTTTTTATAAT+CGG | + | chr4.3:11217260-11217279 | None:intergenic | 10.0% |
| !!! | TAATTAAGTTTTTTTTTTTG+AGG | - | chr4.3:11219705-11219724 | MS.gene030917:intron | 10.0% |
| !! | AATATGTACAATCAATAAAA+AGG | - | chr4.3:11219887-11219906 | MS.gene030917:intron | 15.0% |
| !! | AATGAGTTACAATAAATTAT+TGG | + | chr4.3:11219802-11219821 | None:intergenic | 15.0% |
| !! | ACAAAGAAAAAACAAAAATT+TGG | - | chr4.3:11216953-11216972 | MS.gene030917:CDS | 15.0% |
| !! | ATAAAATAACAATCATAACA+AGG | + | chr4.3:11217507-11217526 | None:intergenic | 15.0% |
| !! | ATAATACATTTACTAAATGT+CGG | - | chr4.3:11219643-11219662 | MS.gene030917:intron | 15.0% |
| !! | ATATATGAATAAATATAGCT+AGG | - | chr4.3:11219952-11219971 | MS.gene030917:intron | 15.0% |
| !! | CAGTATTATTATTCTTATAA+AGG | + | chr4.3:11219995-11220014 | None:intergenic | 15.0% |
| !! | TAAAATAACAATCATAACAA+GGG | + | chr4.3:11217506-11217525 | None:intergenic | 15.0% |
| !! | TTAATTGGTCAAAATTTAAA+AGG | - | chr4.3:11219772-11219791 | MS.gene030917:intron | 15.0% |
| !! | TTTACTCACATATAAAAATA+TGG | - | chr4.3:11217432-11217451 | MS.gene030917:intron | 15.0% |
| !! | TTTACTTATATTTCATTCTT+CGG | - | chr4.3:11219327-11219346 | MS.gene030917:intron | 15.0% |
| !! | TTTCAAAAAAAAAATTTGGT+TGG | + | chr4.3:11219494-11219513 | None:intergenic | 15.0% |
| !!! | ATATTATTTTTTATAATCGG+GGG | + | chr4.3:11217257-11217276 | None:intergenic | 15.0% |
| !!! | ATTAGAATTTAAGTTATCAT+AGG | + | chr4.3:11217281-11217300 | None:intergenic | 15.0% |
| !! | AAAAACAAAAATTTGGTCAA+AGG | - | chr4.3:11216960-11216979 | MS.gene030917:CDS | 20.0% |
| !! | AAAGTTTGAACAAAAAAAGT+TGG | - | chr4.3:11216884-11216903 | MS.gene030917:CDS | 20.0% |
| !! | ATACTCACATAAAAAATTGA+AGG | - | chr4.3:11219614-11219633 | MS.gene030917:intron | 20.0% |
| !! | ATTTAATTAACAAGCCAAAA+TGG | - | chr4.3:11217874-11217893 | MS.gene030917:intron | 20.0% |
| !! | CATAGAAACTATTTAGTAAT+TGG | + | chr4.3:11219530-11219549 | None:intergenic | 20.0% |
| !! | TCAAATTTAATAGTTGTGAT+TGG | - | chr4.3:11217845-11217864 | MS.gene030917:intron | 20.0% |
| !! | TGAGTAAAAAATTAATGAGT+TGG | + | chr4.3:11219164-11219183 | None:intergenic | 20.0% |
| !! | TTACTTATATTTCATTCTTC+GGG | - | chr4.3:11219328-11219347 | MS.gene030917:intron | 20.0% |
| !! | TTATTAGTTGCTAGTTAATT+TGG | + | chr4.3:11218551-11218570 | None:intergenic | 20.0% |
| !!! | AATTTTGTTTTTGGTTATCA+TGG | + | chr4.3:11218048-11218067 | None:intergenic | 20.0% |
| !!! | ACTATTTAGTAATTGGTAAT+TGG | + | chr4.3:11219523-11219542 | None:intergenic | 20.0% |
| !!! | AGGGTAGATTATTTTTTATA+AGG | + | chr4.3:11217019-11217038 | None:intergenic | 20.0% |
| !!! | ATTGTTTACATATTCCATTT+TGG | + | chr4.3:11217891-11217910 | None:intergenic | 20.0% |
| !!! | GGGTAGATTATTTTTTATAA+GGG | + | chr4.3:11217018-11217037 | None:intergenic | 20.0% |
| !!! | GTTATTTTATCAAACTTCTT+TGG | - | chr4.3:11217517-11217536 | MS.gene030917:intron | 20.0% |
| !!! | TAAATATTTTATCCTACTGA+TGG | + | chr4.3:11218087-11218106 | None:intergenic | 20.0% |
| !!! | TAATAAGATTTTTAGCCAAA+AGG | + | chr4.3:11218140-11218159 | None:intergenic | 20.0% |
| !!! | TAGATTATTTTTTATAAGGG+TGG | + | chr4.3:11217015-11217034 | None:intergenic | 20.0% |
| !!! | TCTTTTATATTTTCGTATGT+TGG | + | chr4.3:11217981-11218000 | None:intergenic | 20.0% |
| !!! | TGAAGATATTTATTTTTGCT+TGG | + | chr4.3:11218474-11218493 | None:intergenic | 20.0% |
| !!! | TTTAGATCTTATTTGGTATA+AGG | + | chr4.3:11218506-11218525 | None:intergenic | 20.0% |
| ! | AAAAGATTCATATTCATGCA+AGG | - | chr4.3:11220390-11220409 | MS.gene030917:intron | 25.0% |
| ! | AATCGTATCTACTATATTTG+TGG | + | chr4.3:11219370-11219389 | None:intergenic | 25.0% |
| ! | AATGCATATTTACGTTTCAA+AGG | + | chr4.3:11219307-11219326 | None:intergenic | 25.0% |
| ! | AGAAGAATGAATGAGTAATA+TGG | + | chr4.3:11219039-11219058 | None:intergenic | 25.0% |
| ! | AGATACTATTTGTCTGAATA+AGG | + | chr4.3:11219082-11219101 | None:intergenic | 25.0% |
| ! | ATTTAATAGTTGTGATTGGA+TGG | - | chr4.3:11217849-11217868 | MS.gene030917:intron | 25.0% |
| ! | CAAAACCAAACAACATAAAA+TGG | - | chr4.3:11218242-11218261 | MS.gene030917:intron | 25.0% |
| ! | GAGATAGATTAATAATGAGT+GGG | + | chr4.3:11217781-11217800 | None:intergenic | 25.0% |
| ! | GTTTAAGGAAAATTTAAGGA+GGG | + | chr4.3:11218840-11218859 | None:intergenic | 25.0% |
| ! | TGTAAAGAAAAGAGTGAAAA+TGG | + | chr4.3:11220284-11220303 | None:intergenic | 25.0% |
| ! | TTAAATGAAATCAGTGTGAA+GGG | + | chr4.3:11217804-11217823 | None:intergenic | 25.0% |
| ! | TTCATACCTTCAAATGAAAT+TGG | - | chr4.3:11220562-11220581 | MS.gene030917:intron | 25.0% |
| ! | TTTAAATGAAATCAGTGTGA+AGG | + | chr4.3:11217805-11217824 | None:intergenic | 25.0% |
| ! | TTTAGATGAGAGATAATGAA+TGG | - | chr4.3:11217649-11217668 | MS.gene030917:intron | 25.0% |
| !! | GTAAAAAATTAATGAGTTGG+AGG | + | chr4.3:11219161-11219180 | None:intergenic | 25.0% |
| !! | TTATATTTTCGTATGTTGGT+TGG | + | chr4.3:11217977-11217996 | None:intergenic | 25.0% |
| !!! | GTTACTTTTCAGTTTAATAG+TGG | + | chr4.3:11218628-11218647 | None:intergenic | 25.0% |
| !!! | TGACATTGGTTCTTTTAAAT+GGG | - | chr4.3:11217593-11217612 | MS.gene030917:intron | 25.0% |
| !!! | TGTATTAATTTTTGACTCGA+TGG | - | chr4.3:11216850-11216869 | MS.gene030917:CDS | 25.0% |
| AAAAGGAACGCAAGAATAAA+AGG | - | chr4.3:11217943-11217962 | MS.gene030917:intron | 30.0% | |
| AATAAGGAGTTTGAAGGTTT+GGG | + | chr4.3:11219066-11219085 | None:intergenic | 30.0% | |
| ACAAGTTCAATACTTGACAA+AGG | + | chr4.3:11219136-11219155 | None:intergenic | 30.0% | |
| AGTTTAATAGTGGTGATCAT+TGG | + | chr4.3:11218618-11218637 | None:intergenic | 30.0% | |
| ATCTGAATCAGAAACATCAA+TGG | + | chr4.3:11220234-11220253 | None:intergenic | 30.0% | |
| CTTTCTTTCTCATTGAAAGA+TGG | + | chr4.3:11219202-11219221 | None:intergenic | 30.0% | |
| GGAGATAGATTAATAATGAG+TGG | + | chr4.3:11217782-11217801 | None:intergenic | 30.0% | |
| GGTGGTTTAAGGAAAATTTA+AGG | + | chr4.3:11218844-11218863 | None:intergenic | 30.0% | |
| GGTTTAAGGAAAATTTAAGG+AGG | + | chr4.3:11218841-11218860 | None:intergenic | 30.0% | |
| GTGCATTTAATTCAGTCAAA+TGG | + | chr4.3:11216830-11216849 | None:intergenic | 30.0% | |
| TAAAACACGTGAATGAGAAT+GGG | - | chr4.3:11218522-11218541 | MS.gene030917:intron | 30.0% | |
| TAAATGAAATCAGTGTGAAG+GGG | + | chr4.3:11217803-11217822 | None:intergenic | 30.0% | |
| TAGAATCTAGAAACGATTGT+TGG | + | chr4.3:11218592-11218611 | None:intergenic | 30.0% | |
| TCTATTTCCTTGTCACATTA+TGG | + | chr4.3:11217165-11217184 | None:intergenic | 30.0% | |
| TGTTTATTGTCGCTAATACA+TGG | - | chr4.3:11219257-11219276 | MS.gene030917:intron | 30.0% | |
| TTATATTTCATTCTTCGGGA+GGG | - | chr4.3:11219332-11219351 | MS.gene030917:intron | 30.0% | |
| ! | ATGGATTATTAACTCTTCGA+CGG | + | chr4.3:11218331-11218350 | None:intergenic | 30.0% |
| ! | GATGTTTCTGATTCAGATAA+TGG | - | chr4.3:11220236-11220255 | MS.gene030917:intron | 30.0% |
| ! | GTTCACATTTTCGAACAATA+AGG | + | chr4.3:11220539-11220558 | None:intergenic | 30.0% |
| ! | TATGAATAGAGTCATCCTTT+TGG | - | chr4.3:11218122-11218141 | MS.gene030917:intron | 30.0% |
| ! | TCTGACCATTTTATGTTGTT+TGG | + | chr4.3:11218250-11218269 | None:intergenic | 30.0% |
| !! | AAAGTGTTGAGAGAGAAATA+TGG | + | chr4.3:11218960-11218979 | None:intergenic | 30.0% |
| !! | ATATGGCTCTTTTAGAGAAA+TGG | + | chr4.3:11219022-11219041 | None:intergenic | 30.0% |
| !! | CACGTGTTTTAGATCTTATT+TGG | + | chr4.3:11218513-11218532 | None:intergenic | 30.0% |
| !! | TAGCACAAGAAGTACTAAAA+AGG | - | chr4.3:11217926-11217945 | MS.gene030917:intron | 30.0% |
| !! | TATTTGCTTTTCTTGTGTCT+GGG | + | chr4.3:11218182-11218201 | None:intergenic | 30.0% |
| !! | TTATTTGCTTTTCTTGTGTC+TGG | + | chr4.3:11218183-11218202 | None:intergenic | 30.0% |
| !!! | ATGTTGTTTGGTTTTGTATC+AGG | + | chr4.3:11218238-11218257 | None:intergenic | 30.0% |
| !!! | GTGACATTGGTTCTTTTAAA+TGG | - | chr4.3:11217592-11217611 | MS.gene030917:intron | 30.0% |
| !!! | TTGTTTTTGGTTATCATGGA+TGG | + | chr4.3:11218044-11218063 | None:intergenic | 30.0% |
| AAAACACGTGAATGAGAATG+GGG | - | chr4.3:11218523-11218542 | MS.gene030917:intron | 35.0% | |
| AAAACTCAAGAGCTTGATGA+AGG | + | chr4.3:11216796-11216815 | None:intergenic | 35.0% | |
| ACATTTACTAAATGTCGGAG+AGG | - | chr4.3:11219648-11219667 | MS.gene030917:intron | 35.0% | |
| AGAACAATGAGAGTAACACT+CGG | + | chr4.3:11217727-11217746 | None:intergenic | 35.0% | |
| ATAAGGAGTTTGAAGGTTTG+GGG | + | chr4.3:11219065-11219084 | None:intergenic | 35.0% | |
| ATCGGCTAATTACTTGTTCA+TGG | + | chr4.3:11218350-11218369 | None:intergenic | 35.0% | |
| ATTCCACTTATGTGACATTG+TGG | - | chr4.3:11217114-11217133 | MS.gene030917:CDS | 35.0% | |
| CCAAGACCAATTTCATTTGA+AGG | + | chr4.3:11220571-11220590 | None:intergenic | 35.0% | |
| CTAAAACACGTGAATGAGAA+TGG | - | chr4.3:11218521-11218540 | MS.gene030917:intron | 35.0% | |
| CTGAACCAGTTCTTATGTTT+GGG | + | chr4.3:11218018-11218037 | None:intergenic | 35.0% | |
| CTTATATTTCATTCTTCGGG+AGG | - | chr4.3:11219331-11219350 | MS.gene030917:intron | 35.0% | |
| GAATAAGGAGTTTGAAGGTT+TGG | + | chr4.3:11219067-11219086 | None:intergenic | 35.0% | |
| GAGGATTATCAATCAGAAGA+TGG | - | chr4.3:11220441-11220460 | MS.gene030917:intron | 35.0% | |
| GATCTTGAAAATTAAGACCG+TGG | - | chr4.3:11219851-11219870 | MS.gene030917:intron | 35.0% | |
| TAAGAGAGAGATAGAGACAA+TGG | - | chr4.3:11217673-11217692 | MS.gene030917:intron | 35.0% | |
| TAAGGAAAATTTAAGGAGGG+TGG | + | chr4.3:11218837-11218856 | None:intergenic | 35.0% | |
| TAATAATGAGTGGGAGACAT+GGG | + | chr4.3:11217772-11217791 | None:intergenic | 35.0% | |
| TATTTGCTTCAACCATCAGT+AGG | - | chr4.3:11218072-11218091 | MS.gene030917:intron | 35.0% | |
| TCTCACGATTGTGATAAGAA+CGG | + | chr4.3:11219591-11219610 | None:intergenic | 35.0% | |
| TGACTCTATTCATAATCGTG+TGG | + | chr4.3:11218116-11218135 | None:intergenic | 35.0% | |
| TGGACTAAGATACCAAAACT+GGG | - | chr4.3:11220109-11220128 | MS.gene030917:intron | 35.0% | |
| TGGTTTATGATCTCTCGAAT+GGG | + | chr4.3:11219474-11219493 | None:intergenic | 35.0% | |
| TGTACATATTAGAGTGACTG+TGG | + | chr4.3:11219877-11219896 | None:intergenic | 35.0% | |
| TGTCTGAATAAGGAGTTTGA+AGG | + | chr4.3:11219072-11219091 | None:intergenic | 35.0% | |
| TTAATAATGAGTGGGAGACA+TGG | + | chr4.3:11217773-11217792 | None:intergenic | 35.0% | |
| TTCATATTCATGCAAGGCTA+CGG | - | chr4.3:11220396-11220415 | MS.gene030917:intron | 35.0% | |
| TTCATGTTCGGGAAATACTT+GGG | - | chr4.3:11217545-11217564 | MS.gene030917:intron | 35.0% | |
| TTGGTTTATGATCTCTCGAA+TGG | + | chr4.3:11219475-11219494 | None:intergenic | 35.0% | |
| TTTCATGTTCGGGAAATACT+TGG | - | chr4.3:11217544-11217563 | MS.gene030917:intron | 35.0% | |
| TTTCCAACCATAATGTGACA+AGG | - | chr4.3:11217155-11217174 | MS.gene030917:CDS | 35.0% | |
| TTTCCTTGTCACATTATGGT+TGG | + | chr4.3:11217161-11217180 | None:intergenic | 35.0% | |
| TTTCTTGTGTCTGGGTAATT+TGG | + | chr4.3:11218174-11218193 | None:intergenic | 35.0% | |
| TTTGGAAAACAACGTTTGAG+AGG | + | chr4.3:11220152-11220171 | None:intergenic | 35.0% | |
| TTTGTCAGATCCTCTGTAAA+GGG | + | chr4.3:11218788-11218807 | None:intergenic | 35.0% | |
| ! | CCTTCAAATGAAATTGGTCT+TGG | - | chr4.3:11220568-11220587 | MS.gene030917:intron | 35.0% |
| ! | CTGTTCGTAACAAGTTCTTT+TGG | + | chr4.3:11220170-11220189 | None:intergenic | 35.0% |
| ! | TCTTTGGTAGCTTTCATGTT+CGG | - | chr4.3:11217533-11217552 | MS.gene030917:intron | 35.0% |
| ! | TTTTGTCAGATCCTCTGTAA+AGG | + | chr4.3:11218789-11218808 | None:intergenic | 35.0% |
| !! | AAAGAACTTGTTACGAACAG+TGG | - | chr4.3:11220170-11220189 | MS.gene030917:intron | 35.0% |
| !! | CTCTTTTAGAGAAATGGTGT+TGG | + | chr4.3:11219016-11219035 | None:intergenic | 35.0% |
| !! | GCTATATACTACTTTTGCGA+GGG | - | chr4.3:11220306-11220325 | MS.gene030917:intron | 35.0% |
| !! | TGCTATATACTACTTTTGCG+AGG | - | chr4.3:11220305-11220324 | MS.gene030917:intron | 35.0% |
| !! | TTTTAGAGAAATGGTGTTGG+AGG | + | chr4.3:11219013-11219032 | None:intergenic | 35.0% |
| !!! | AACTATTTTGATGCATCGGA+CGG | + | chr4.3:11219555-11219574 | None:intergenic | 35.0% |
| !!! | CGCTAACTATTTTGATGCAT+CGG | + | chr4.3:11219559-11219578 | None:intergenic | 35.0% |
| !!! | TTGTTTGGTTTTGTATCAGG+TGG | + | chr4.3:11218235-11218254 | None:intergenic | 35.0% |
| !!! | TTTTTGGTTATCATGGATGG+TGG | + | chr4.3:11218041-11218060 | None:intergenic | 35.0% |
| AATAATGAGTGGGAGACATG+GGG | + | chr4.3:11217771-11217790 | None:intergenic | 40.0% | |
| AATGTCACCAATGAGACCAA+AGG | + | chr4.3:11217580-11217599 | None:intergenic | 40.0% | |
| ACAATCATAACAAGGGCTTG+TGG | + | chr4.3:11217499-11217518 | None:intergenic | 40.0% | |
| ACGAAAACAACCTCCTAAAC+TGG | - | chr4.3:11218746-11218765 | MS.gene030917:intron | 40.0% | |
| AGAGAGAAATATGGTGAGAG+AGG | + | chr4.3:11218951-11218970 | None:intergenic | 40.0% | |
| ATTAACTCTTCGACGGTGTT+TGG | + | chr4.3:11218324-11218343 | None:intergenic | 40.0% | |
| CAATCATAACAAGGGCTTGT+GGG | + | chr4.3:11217498-11217517 | None:intergenic | 40.0% | |
| CAATGCCCAAACATAAGAAC+TGG | - | chr4.3:11218010-11218029 | MS.gene030917:intron | 40.0% | |
| CAGTTCTTATGTTTGGGCAT+TGG | + | chr4.3:11218012-11218031 | None:intergenic | 40.0% | |
| CCACATGCATTGCATAAAAC+TGG | + | chr4.3:11220092-11220111 | None:intergenic | 40.0% | |
| CTCCAAACCCAATACCATTA+CGG | - | chr4.3:11218870-11218889 | MS.gene030917:intron | 40.0% | |
| GAAAATTTAAGGAGGGTGGT+GGG | + | chr4.3:11218833-11218852 | None:intergenic | 40.0% | |
| GAACAATGAGAGTAACACTC+GGG | + | chr4.3:11217726-11217745 | None:intergenic | 40.0% | |
| GAGAGAAATATGGTGAGAGA+GGG | + | chr4.3:11218950-11218969 | None:intergenic | 40.0% | |
| GATAGAGACAATGGTACCAA+TGG | - | chr4.3:11217682-11217701 | MS.gene030917:intron | 40.0% | |
| GCAGTTCTTCTTAAACCAGA+CGG | - | chr4.3:11220592-11220611 | MS.gene030917:CDS | 40.0% | |
| GCTGAACCAGTTCTTATGTT+TGG | + | chr4.3:11218019-11218038 | None:intergenic | 40.0% | |
| GGACTAAGATACCAAAACTG+GGG | - | chr4.3:11220110-11220129 | MS.gene030917:intron | 40.0% | |
| GTATTGGGTTTGGAGAAGAA+AGG | + | chr4.3:11218865-11218884 | None:intergenic | 40.0% | |
| TCATACACCTTTGGTCTCAT+TGG | - | chr4.3:11217570-11217589 | MS.gene030917:intron | 40.0% | |
| TGGAGAAGAAAGGTGGTTTA+AGG | + | chr4.3:11218855-11218874 | None:intergenic | 40.0% | |
| TGGGACTAAAGTTGTCTTCA+TGG | + | chr4.3:11219455-11219474 | None:intergenic | 40.0% | |
| TGTGATAAGAACGGCTAGTA+GGG | + | chr4.3:11219582-11219601 | None:intergenic | 40.0% | |
| TTGTCAGATCCTCTGTAAAG+GGG | + | chr4.3:11218787-11218806 | None:intergenic | 40.0% | |
| TTGTGATAAGAACGGCTAGT+AGG | + | chr4.3:11219583-11219602 | None:intergenic | 40.0% | |
| TTTCTCTCAAGGACCAGTTT+AGG | + | chr4.3:11218762-11218781 | None:intergenic | 40.0% | |
| ! | AGGATGTTGGTGGATAAAGA+GGG | + | chr4.3:11218993-11219012 | None:intergenic | 40.0% |
| ! | CATAAAACTGGCTTCTCTTC+TGG | + | chr4.3:11220080-11220099 | None:intergenic | 40.0% |
| ! | CTTCAAGATTTCCCCAGTTT+TGG | + | chr4.3:11220124-11220143 | None:intergenic | 40.0% |
| ! | CTTTGGTAGCTTTCATGTTC+GGG | - | chr4.3:11217534-11217553 | MS.gene030917:intron | 40.0% |
| ! | GTGGACTAAGATACCAAAAC+TGG | - | chr4.3:11220108-11220127 | MS.gene030917:intron | 40.0% |
| ! | TTTGGTCTCATTGGTGACAT+TGG | - | chr4.3:11217579-11217598 | MS.gene030917:intron | 40.0% |
| !! | AGGGTGTGGTGTTACAAAAT+CGG | + | chr4.3:11218368-11218387 | None:intergenic | 40.0% |
| !! | ATATACTACTTTTGCGAGGG+TGG | - | chr4.3:11220309-11220328 | MS.gene030917:intron | 40.0% |
| !! | CCAGTTTTATGCAATGCATG+TGG | - | chr4.3:11220089-11220108 | MS.gene030917:intron | 40.0% |
| !! | TATACTACTTTTGCGAGGGT+GGG | - | chr4.3:11220310-11220329 | MS.gene030917:intron | 40.0% |
| !! | TTAGGAGGTTGTTTTCGTTG+AGG | + | chr4.3:11218744-11218763 | None:intergenic | 40.0% |
| ACTCTCACCTTTGTGTGAGA+GGG | + | chr4.3:11218387-11218406 | None:intergenic | 45.0% | |
| ACTTACACTTTGCTCCGCAA+TGG | + | chr4.3:11216767-11216786 | None:intergenic | 45.0% | |
| AGAGAAACACCCCTTTACAG+AGG | - | chr4.3:11218775-11218794 | MS.gene030917:intron | 45.0% | |
| ATCCTCAAACTACGCCTCTT+TGG | + | chr4.3:11220427-11220446 | None:intergenic | 45.0% | |
| CCAATGGCACAAAAAGCCAA+TGG | - | chr4.3:11217698-11217717 | MS.gene030917:intron | 45.0% | |
| CGAACAATAAGGCCTCTTCT+GGG | + | chr4.3:11220528-11220547 | None:intergenic | 45.0% | |
| GAACAATAAGGCCTCTTCTG+GGG | + | chr4.3:11220527-11220546 | None:intergenic | 45.0% | |
| GGAAAATTTAAGGAGGGTGG+TGG | + | chr4.3:11218834-11218853 | None:intergenic | 45.0% | |
| TATTAGAGTGACTGTGGCCA+CGG | + | chr4.3:11219871-11219890 | None:intergenic | 45.0% | |
| TCGAACAATAAGGCCTCTTC+TGG | + | chr4.3:11220529-11220548 | None:intergenic | 45.0% | |
| TCGCCACAATGTCACATAAG+TGG | + | chr4.3:11217120-11217139 | None:intergenic | 45.0% | |
| TGTGGGTCCGTAATGGTATT+GGG | + | chr4.3:11218880-11218899 | None:intergenic | 45.0% | |
| TTGGGTTTGGAGAAGAAAGG+TGG | + | chr4.3:11218862-11218881 | None:intergenic | 45.0% | |
| ! | AAGGGTGGTTGTGCTGATAT+AGG | + | chr4.3:11217000-11217019 | None:intergenic | 45.0% |
| ! | ACTTGGGTGTCATACACCTT+TGG | - | chr4.3:11217561-11217580 | MS.gene030917:intron | 45.0% |
| ! | GAAATGGTGTTGGAGGATGT+TGG | + | chr4.3:11219006-11219025 | None:intergenic | 45.0% |
| ! | GAGGATGTTGGTGGATAAAG+AGG | + | chr4.3:11218994-11219013 | None:intergenic | 45.0% |
| ! | GGATGTTGGTGGATAAAGAG+GGG | + | chr4.3:11218992-11219011 | None:intergenic | 45.0% |
| ! | GTCCGTAATGGTATTGGGTT+TGG | + | chr4.3:11218875-11218894 | None:intergenic | 45.0% |
| ! | TTTTCGTTGAGGTGGGAAGA+GGG | + | chr4.3:11218733-11218752 | None:intergenic | 45.0% |
| ! | TTTTTCCAGCAACTCCAGCA+TGG | - | chr4.3:11220045-11220064 | MS.gene030917:intron | 45.0% |
| !! | GAGGTTGTTTTCGTTGAGGT+GGG | + | chr4.3:11218740-11218759 | None:intergenic | 45.0% |
| !! | GTAAAGGGGTGTTTCTCTCA+AGG | + | chr4.3:11218773-11218792 | None:intergenic | 45.0% |
| !!! | CCATTGGCTTTTTGTGCCAT+TGG | + | chr4.3:11217701-11217720 | None:intergenic | 45.0% |
| !! | AATTAATAATAATAATAAAG+TGG | - | chr4.3:11217303-11217322 | MS.gene030917:intron | 5.0% |
| !!! | AATTTTTTTATTAAAAAACA+TGG | - | chr4.3:11217044-11217063 | MS.gene030917:intron | 5.0% |
| !!! | ATTTTTTCAAAAAAAAAATT+TGG | + | chr4.3:11219498-11219517 | None:intergenic | 5.0% |
| !!! | TGTTTTTTAATAAAAAAATT+AGG | + | chr4.3:11217044-11217063 | None:intergenic | 5.0% |
| AGAGGGCTCTTGAAAGAGGT+AGG | + | chr4.3:11218933-11218952 | None:intergenic | 50.0% | |
| AGATGAGTCATCCCCAGAAG+AGG | - | chr4.3:11220513-11220532 | MS.gene030917:intron | 50.0% | |
| CTCTCAAGGACCAGTTTAGG+AGG | + | chr4.3:11218759-11218778 | None:intergenic | 50.0% | |
| GACTCTCACCTTTGTGTGAG+AGG | + | chr4.3:11218388-11218407 | None:intergenic | 50.0% | |
| GTGTGGGTCCGTAATGGTAT+TGG | + | chr4.3:11218881-11218900 | None:intergenic | 50.0% | |
| TGAGAGAGGGCTCTTGAAAG+AGG | + | chr4.3:11218937-11218956 | None:intergenic | 50.0% | |
| TTTGCTCCGCAATGGTTGCA+TGG | + | chr4.3:11216759-11216778 | None:intergenic | 50.0% | |
| ! | ATGGTGTTGGAGGATGTTGG+TGG | + | chr4.3:11219003-11219022 | None:intergenic | 50.0% |
| ! | CTCCAAAGAGGCGTAGTTTG+AGG | - | chr4.3:11220422-11220441 | MS.gene030917:intron | 50.0% |
| ! | GTTTTCGTTGAGGTGGGAAG+AGG | + | chr4.3:11218734-11218753 | None:intergenic | 50.0% |
| ! | TCTTCTGGGGATGACTCATC+TGG | + | chr4.3:11220514-11220533 | None:intergenic | 50.0% |
| !! | GGAGGTTGTTTTCGTTGAGG+TGG | + | chr4.3:11218741-11218760 | None:intergenic | 50.0% |
| !! | GTGTTTGGTAGCGTGTTCGA+CGG | + | chr4.3:11218309-11218328 | None:intergenic | 50.0% |
| ACGCCTCCAACTCCCAACAT+CGG | - | chr4.3:11218705-11218724 | MS.gene030917:intron | 55.0% | |
| AGGCTACGGTCTCTCCAAAG+AGG | - | chr4.3:11220410-11220429 | MS.gene030917:intron | 55.0% | |
| CACCAACTCCTTCCACCACA+CGG | - | chr4.3:11218898-11218917 | MS.gene030917:intron | 55.0% | |
| CACCACACCCTCTCACACAA+AGG | - | chr4.3:11218377-11218396 | MS.gene030917:intron | 55.0% | |
| CACCTTTGTGTGAGAGGGTG+TGG | + | chr4.3:11218382-11218401 | None:intergenic | 55.0% | |
| CGTGGTCCATGCAACCATTG+CGG | - | chr4.3:11216750-11216769 | MS.gene030917:CDS | 55.0% | |
| GAGGCGTAGGTTGTTTGCGT+GGG | + | chr4.3:11218692-11218711 | None:intergenic | 55.0% | |
| TAGGTTGTTTGCGTGGGAGG+AGG | + | chr4.3:11218686-11218705 | None:intergenic | 55.0% | |
| ! | ATGTTGGGAGTTGGAGGCGT+AGG | + | chr4.3:11218705-11218724 | None:intergenic | 55.0% |
| ! | GAGTAACACTCGGGTGCCAT+TGG | + | chr4.3:11217717-11217736 | None:intergenic | 55.0% |
| !! | GAGTTGGTGTGGGTCCGTAA+TGG | + | chr4.3:11218887-11218906 | None:intergenic | 55.0% |
| !! | GTGGGAGGAGGAGTTGGTAA+GGG | + | chr4.3:11218674-11218693 | None:intergenic | 55.0% |
| !! | GTGGTGGAAGGAGTTGGTGT+GGG | + | chr4.3:11218897-11218916 | None:intergenic | 55.0% |
| !! | TAAGGAGGGTGGTGGGTGAT+GGG | + | chr4.3:11218826-11218845 | None:intergenic | 55.0% |
| !! | TGTGGTGGAAGGAGTTGGTG+TGG | + | chr4.3:11218898-11218917 | None:intergenic | 55.0% |
| !! | TTAAGGAGGGTGGTGGGTGA+TGG | + | chr4.3:11218827-11218846 | None:intergenic | 55.0% |
| !! | TTTGGTAGCGTGTTCGACGG+TGG | + | chr4.3:11218306-11218325 | None:intergenic | 55.0% |
| AGGGAGCCGATGTTGGGAGT+TGG | + | chr4.3:11218714-11218733 | None:intergenic | 60.0% | |
| AGGTCGATGAGTCCGTGTGG+TGG | + | chr4.3:11218913-11218932 | None:intergenic | 60.0% | |
| CTGGCTTCTCTTCTGGTCCC+TGG | + | chr4.3:11220073-11220092 | None:intergenic | 60.0% | |
| GAGCCGATGTTGGGAGTTGG+AGG | + | chr4.3:11218711-11218730 | None:intergenic | 60.0% | |
| GCGTAGGTTGTTTGCGTGGG+AGG | + | chr4.3:11218689-11218708 | None:intergenic | 60.0% | |
| GGGAAGAGGGAGCCGATGTT+GGG | + | chr4.3:11218720-11218739 | None:intergenic | 60.0% | |
| GGTAGGTCGATGAGTCCGTG+TGG | + | chr4.3:11218916-11218935 | None:intergenic | 60.0% | |
| GTTTGCGTGGGAGGAGGAGT+TGG | + | chr4.3:11218680-11218699 | None:intergenic | 60.0% | |
| TGGGAAGAGGGAGCCGATGT+TGG | + | chr4.3:11218721-11218740 | None:intergenic | 60.0% | |
| ! | CGATGAGTCCGTGTGGTGGA+AGG | + | chr4.3:11218909-11218928 | None:intergenic | 60.0% |
| ! | GGAGGCGTAGGTTGTTTGCG+TGG | + | chr4.3:11218693-11218712 | None:intergenic | 60.0% |
| ! | GTCCGTGTGGTGGAAGGAGT+TGG | + | chr4.3:11218903-11218922 | None:intergenic | 60.0% |
| !! | AAGGAGGGTGGTGGGTGATG+GGG | + | chr4.3:11218825-11218844 | None:intergenic | 60.0% |
| !! | CGTGGGAGGAGGAGTTGGTA+AGG | + | chr4.3:11218675-11218694 | None:intergenic | 60.0% |
| AGCAACTCCAGCATGGCGCC+AGG | - | chr4.3:11220052-11220071 | MS.gene030917:intron | 65.0% | |
| GCAACTCCAGCATGGCGCCA+GGG | - | chr4.3:11220053-11220072 | MS.gene030917:intron | 65.0% | |
| TGGCGCCATGCTGGAGTTGC+TGG | + | chr4.3:11220053-11220072 | None:intergenic | 65.0% | |
| TCTGGTCCCTGGCGCCATGC+TGG | + | chr4.3:11220062-11220081 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 11216741 | 11220627 | 11216741 | ID=MS.gene030917 |
| chr4.3 | mRNA | 11216741 | 11220627 | 11216741 | ID=MS.gene030917.t1;Parent=MS.gene030917 |
| chr4.3 | exon | 11220588 | 11220627 | 11220588 | ID=MS.gene030917.t1.exon1;Parent=MS.gene030917.t1 |
| chr4.3 | CDS | 11220588 | 11220627 | 11220588 | ID=cds.MS.gene030917.t1;Parent=MS.gene030917.t1 |
| chr4.3 | exon | 11217111 | 11217314 | 11217111 | ID=MS.gene030917.t1.exon2;Parent=MS.gene030917.t1 |
| chr4.3 | CDS | 11217111 | 11217314 | 11217111 | ID=cds.MS.gene030917.t1;Parent=MS.gene030917.t1 |
| chr4.3 | exon | 11216741 | 11216982 | 11216741 | ID=MS.gene030917.t1.exon3;Parent=MS.gene030917.t1 |
| chr4.3 | CDS | 11216741 | 11216982 | 11216741 | ID=cds.MS.gene030917.t1;Parent=MS.gene030917.t1 |
| Gene Sequence |
| Protein sequence |
