AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030993

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030993.t1 MTR_6g011450 66.168 535 81 12 15 474 304 813 0.0 626
MS.gene030993.t1 MTR_6g011450 66.168 535 81 12 15 474 166 675 0.0 625
MS.gene030993.t1 MTR_4g073340 59.546 529 105 11 6 474 15 494 0.0 530
MS.gene030993.t1 MTR_6g011470 72.692 260 20 2 216 474 1 210 1.53e-130 376
MS.gene030993.t1 MTR_1g061130 33.203 256 124 7 263 474 756 1008 1.44e-37 147
MS.gene030993.t1 MTR_1g061130 33.203 256 124 7 263 474 756 1008 1.54e-37 147
MS.gene030993.t1 MTR_7g103840 29.213 267 146 5 249 474 749 1013 6.47e-35 139
MS.gene030993.t1 MTR_7g103840 29.213 267 146 5 249 474 751 1015 7.43e-35 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030993.t1 AT4G04885 40.230 522 199 16 30 473 303 789 2.09e-103 327
MS.gene030993.t1 AT1G66500 35.860 343 169 15 159 472 66 386 5.21e-51 179
MS.gene030993.t1 AT5G43620 33.152 368 171 14 131 472 62 380 8.85e-51 178
MS.gene030993.t1 AT2G36480 33.333 180 107 4 293 472 776 942 3.23e-26 113
MS.gene030993.t1 AT2G36480 33.333 180 107 4 293 472 776 942 3.23e-26 113

Find 140 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACGAACCTTGAGAATATT+TGG 0.171658 6.2:-5702165 None:intergenic
GTGACTGCTGTGCTCATCTT+TGG 0.248435 6.2:-5702259 None:intergenic
CACATAATACACATGTATTT+TGG 0.257716 6.2:-5702479 None:intergenic
AAGAGTTGTTTCCAATTCTT+TGG 0.269721 6.2:-5701792 None:intergenic
TAGGCATCAATTAGAGCTAT+TGG 0.294593 6.2:-5701241 None:intergenic
ATGCCTGTTGTTATTCCATT+AGG 0.320007 6.2:-5702576 None:intergenic
TGTCCACTGGTTGGCGAGTT+AGG 0.324685 6.2:-5701655 None:intergenic
TCAGCGTCAAGGGTGTTTCC+TGG 0.325987 6.2:+5701388 MS.gene030993:CDS
GATTCGAATGGATTCCTAAC+AGG 0.333615 6.2:-5701520 None:intergenic
TCTAGGAAAATCACCATATA+AGG 0.334486 6.2:-5702205 None:intergenic
AGATGAAGAGTTGGCTGTTC+CGG 0.339955 6.2:+5702446 MS.gene030993:CDS
TCTAAAGTTGCTGGCGAAAC+TGG 0.342653 6.2:-5701439 None:intergenic
TTATTCCATTAGGCGCATTA+AGG 0.358655 6.2:-5702566 None:intergenic
CGAAAAGACAAGAAACTTCA+TGG 0.371299 6.2:+5701272 MS.gene030993:CDS
TTGTTTCCAATTCTTTGGTC+TGG 0.372660 6.2:-5701787 None:intergenic
ATTTGTTGGCGTTTCTCTCC+TGG 0.390789 6.2:-5701134 None:intergenic
GATTCGGATGAGGTAGAATC+TGG 0.392316 6.2:-5701849 None:intergenic
GCGTGGAGCATGCACATTTA+CGG 0.392529 6.2:-5701473 None:intergenic
CTGCATTTAGCATGAATAAC+GGG 0.394865 6.2:-5702618 None:intergenic
GGCTGTTGGCTTGACACATT+AGG 0.397611 6.2:-5701877 None:intergenic
ATGATTCCGACACCAGCAAC+TGG 0.398413 6.2:+5701331 MS.gene030993:CDS
GGATTCTTCGATGGATATAT+AGG 0.398722 6.2:-5701499 None:intergenic
GGCATAACAGGTCGTGCATT+TGG 0.398786 6.2:-5701754 None:intergenic
GGCATAGGAAGTGGCATAAC+AGG 0.399981 6.2:-5701766 None:intergenic
AAAGAAAGAAGATGAAGAGT+TGG 0.403383 6.2:+5702437 MS.gene030993:CDS
GTAGCGGGCTTCCCAGTTGC+TGG 0.407709 6.2:-5701343 None:intergenic
CCGAAGAGGAGGAGTTCAAT+TGG 0.408130 6.2:+5701302 MS.gene030993:CDS
TAACAGGTCGTGCATTTGGC+AGG 0.413669 6.2:-5701750 None:intergenic
CCATGTTCATGCACAGGAAT+AGG 0.417748 6.2:-5701589 None:intergenic
GCTTAAAGGTGCCGAGGCAT+TGG 0.418088 6.2:+5702368 MS.gene030993:CDS
TCTGTAATCCGTGCCTTATA+TGG 0.421993 6.2:+5702192 MS.gene030993:CDS
AGTGAGACGATGTGGCTTAA+AGG 0.439793 6.2:+5702354 MS.gene030993:CDS
CCCTGCGGAGGTAACTAAAT+CGG 0.441235 6.2:+5702002 MS.gene030993:CDS
GTATACCTTAATGCGCCTAA+TGG 0.441302 6.2:+5702561 MS.gene030993:CDS
CCAATTGAACTCCTCCTCTT+CGG 0.441961 6.2:-5701302 None:intergenic
CCTATGCCAGACCAAAGAAT+TGG 0.442099 6.2:+5701781 MS.gene030993:CDS
GCTCATCTTTGGATTTGAAT+CGG 0.447487 6.2:-5702248 None:intergenic
CTTAAAGGTGCCGAGGCATT+GGG 0.453885 6.2:+5702369 MS.gene030993:CDS
GCGAGTTAGGCAACTGATGC+AGG 0.458157 6.2:-5701642 None:intergenic
TTCCGACCTTTACCTCCAGC+TGG 0.468020 6.2:+5701814 MS.gene030993:CDS
GTCAATTTAGTTACCTCCGC+AGG 0.469131 6.2:-5701970 None:intergenic
AAAACTGATGAAGAATTTGT+TGG 0.470398 6.2:-5701148 None:intergenic
GCATGGCCAGCTGGAGGTAA+AGG 0.470453 6.2:-5701820 None:intergenic
GCATTTGCTGCAATAGTAGC+GGG 0.472527 6.2:-5701358 None:intergenic
CTTTGGTCTGGCATAGGAAG+TGG 0.476736 6.2:-5701775 None:intergenic
GAAAGGCTGTGTTTGTCCAC+TGG 0.478843 6.2:-5701668 None:intergenic
AAAGGAAGAAGATGCTTGCC+AGG 0.480340 6.2:+5701116 None:intergenic
GGCTTCCCAGTTGCTGGTGT+CGG 0.485684 6.2:-5701337 None:intergenic
GCCGATTTAGTTACCTCCGC+AGG 0.485908 6.2:-5702003 None:intergenic
GGCCTCGTTTCTAAAGTTGC+TGG 0.487458 6.2:-5701448 None:intergenic
GGCATAGACAGGTCGCAGTT+AGG 0.489584 6.2:+5702594 MS.gene030993:CDS
GACACATTAGGACCAGGATT+CGG 0.491699 6.2:-5701865 None:intergenic
GCGCCTAATGGAATAACAAC+AGG 0.497466 6.2:+5702573 MS.gene030993:CDS
ATTCTACCTCATCCGAATCC+TGG 0.497538 6.2:+5701853 MS.gene030993:CDS
CAATTCACTTTGCGAAGACA+TGG 0.499949 6.2:+5701724 MS.gene030993:CDS
TGGGGTAGAGCATGGCCAGC+TGG 0.501385 6.2:-5701829 None:intergenic
CGAAGAGGAGGAGTTCAATT+GGG 0.502140 6.2:+5701303 MS.gene030993:CDS
TTGGGAGTCAAGTCAGCTCC+AGG 0.502567 6.2:+5702387 MS.gene030993:CDS
ACGGAGGAGTGGATGTATAG+AGG 0.502902 6.2:+5702534 MS.gene030993:CDS
TTAGCATTTATTGATTCGAA+TGG 0.504936 6.2:-5701532 None:intergenic
CCACAAGTTGTGCACTGTCT+AGG 0.505428 6.2:-5702222 None:intergenic
TCACTGTAAAACTCCTCAAA+AGG 0.506831 6.2:-5702507 None:intergenic
ATCCATCGAAGAATCCTGTT+AGG 0.507185 6.2:+5701506 MS.gene030993:CDS
GGCCCAAGGTGTTATCTCAT+TGG 0.509000 6.2:+5701936 MS.gene030993:CDS
CCAATTCTTTGGTCTGGCAT+AGG 0.509747 6.2:-5701781 None:intergenic
ATAGCTCTAATTGATGCCTA+TGG 0.514260 6.2:+5701244 MS.gene030993:CDS
AGCACAGCAGTCACATGGAT+TGG 0.529243 6.2:+5702268 MS.gene030993:CDS
AGCCAATGAGATAACACCTT+GGG 0.530219 6.2:-5701938 None:intergenic
ATTGATTTAGTTACCTCCGC+AGG 0.532041 6.2:-5702036 None:intergenic
TGCAACTTCTTCAGCGTCAA+GGG 0.532463 6.2:+5701378 MS.gene030993:CDS
CAAAATACATGTGTATTATG+TGG 0.534814 6.2:+5702480 MS.gene030993:CDS
AAAGTGAATTGCGACGCTGC+TGG 0.537318 6.2:-5701712 None:intergenic
CCTAGACAGTGCACAACTTG+TGG 0.539415 6.2:+5702222 MS.gene030993:CDS
AACAGGTCGTGCATTTGGCA+GGG 0.540179 6.2:-5701749 None:intergenic
CGCCAGCAACTTTAGAAACG+AGG 0.548232 6.2:+5701446 MS.gene030993:CDS
GAATAACAACAGGCATAGAC+AGG 0.548628 6.2:+5702583 MS.gene030993:CDS
AAATTAGAATATCCGACAGT+TGG 0.551878 6.2:-5701898 None:intergenic
AGCAGAAACCCTCTCGCAAG+TGG 0.553269 6.2:+5702325 MS.gene030993:CDS
AATATCCGACAGTTGGCTGT+TGG 0.554695 6.2:-5701891 None:intergenic
TCTGCATTTAGCATGAATAA+CGG 0.555648 6.2:-5702619 None:intergenic
ATTAGTTCACTCGTGGCCCA+AGG 0.558294 6.2:+5701922 MS.gene030993:CDS
TTCCTAACAGGATTCTTCGA+TGG 0.563320 6.2:-5701508 None:intergenic
ATGCAACTTCTTCAGCGTCA+AGG 0.564208 6.2:+5701377 MS.gene030993:CDS
ACAGGTCGTGCATTTGGCAG+GGG 0.566169 6.2:-5701748 None:intergenic
CCGATTTAGTTACCTCCGCA+GGG 0.567759 6.2:-5702002 None:intergenic
GGCTGTGTTTGTCCACTGGT+TGG 0.570152 6.2:-5701664 None:intergenic
TGCATTTGCTGCAATAGTAG+CGG 0.574043 6.2:-5701359 None:intergenic
TGGCTTGACACATTAGGACC+AGG 0.576366 6.2:-5701871 None:intergenic
ATTCGGATGAGGTAGAATCT+GGG 0.576849 6.2:-5701848 None:intergenic
CTCACAAACCACTTGCGAGA+GGG 0.577171 6.2:-5702333 None:intergenic
GATGGATATATAGGAGGGCG+TGG 0.577296 6.2:-5701490 None:intergenic
TAATTTGATTAGTTCACTCG+TGG 0.577584 6.2:+5701915 MS.gene030993:CDS
TTCTTCGATGGATATATAGG+AGG 0.577700 6.2:-5701496 None:intergenic
TTAGGACCAGGATTCGGATG+AGG 0.577777 6.2:-5701859 None:intergenic
GAATATTTGGATCAAACTCA+AGG 0.580223 6.2:-5702152 None:intergenic
AGATGAGCACAGCAGTCACA+TGG 0.587427 6.2:+5702263 MS.gene030993:CDS
GTTTGATCCAAATATTCTCA+AGG 0.588305 6.2:+5702158 MS.gene030993:CDS
TCGACACCATGTTCATGCAC+AGG 0.588454 6.2:-5701595 None:intergenic
CCTATTCCTGTGCATGAACA+TGG 0.596190 6.2:+5701589 MS.gene030993:CDS
GTAGAATCTGGGGTAGAGCA+TGG 0.600654 6.2:-5701837 None:intergenic
CATCTTTGGATTTGAATCGG+AGG 0.601375 6.2:-5702245 None:intergenic
TTGCCTAACTCGCCAACCAG+TGG 0.608662 6.2:+5701652 MS.gene030993:CDS
GACGCTGCTGGATTCTGAGA+TGG 0.609727 6.2:-5701700 None:intergenic
TCAATTTAGTTACCTCCGCA+GGG 0.611572 6.2:-5701969 None:intergenic
CAGGTCGTGCATTTGGCAGG+GGG 0.612021 6.2:-5701747 None:intergenic
TTGATTTAGTTACCTCCGCA+GGG 0.612955 6.2:-5702035 None:intergenic
GACTAATCAAACCCCTGCGG+AGG 0.614341 6.2:+5701990 MS.gene030993:CDS
GGCCAGCTGGAGGTAAAGGT+CGG 0.614768 6.2:-5701816 None:intergenic
GAAAATCACCATATAAGGCA+CGG 0.619885 6.2:-5702200 None:intergenic
AATACTACCACTGTTAGTCA+TGG 0.626258 6.2:+5701553 MS.gene030993:CDS
TGATTCCGACACCAGCAACT+GGG 0.627867 6.2:+5701332 MS.gene030993:CDS
TTGCTGGCGAAACTGGTGAA+TGG 0.629934 6.2:-5701432 None:intergenic
ATGGAAGAATACCGAAGAGG+AGG 0.631037 6.2:+5701291 MS.gene030993:CDS
ACTCACAAACCACTTGCGAG+AGG 0.633226 6.2:-5702334 None:intergenic
ACAGTGATGAAACGGAGGAG+TGG 0.635697 6.2:+5702523 MS.gene030993:CDS
GGAGCATGCACATTTACGGA+GGG 0.638477 6.2:-5701469 None:intergenic
GAGTTCAGCTATCTCAGCAA+CGG 0.640673 6.2:+5701202 MS.gene030993:CDS
TGACTTGACTCCCAATGCCT+CGG 0.643816 6.2:-5702379 None:intergenic
TCAAGCCAACAGCCAACTGT+CGG 0.643822 6.2:+5701886 MS.gene030993:CDS
GGCTAATCAAGCCCCTGCGG+AGG 0.645043 6.2:+5701957 MS.gene030993:CDS
TCTTCGATGGATATATAGGA+GGG 0.645228 6.2:-5701495 None:intergenic
GTTGGCTGTTCCGGCCGACG+AGG 0.646045 6.2:+5702455 MS.gene030993:CDS
TGGAGCATGCACATTTACGG+AGG 0.651493 6.2:-5701470 None:intergenic
TTCGGATGAGGTAGAATCTG+GGG 0.651800 6.2:-5701847 None:intergenic
GGCTAATCAAGCCCCTGCGG+AGG 0.653058 6.2:+5702023 MS.gene030993:CDS
ATCGGCTAATCAAGCCCCTG+CGG 0.657358 6.2:+5702020 MS.gene030993:CDS
TCAGTATTAGAATTGAGACC+AGG 0.658819 6.2:-5701406 None:intergenic
TAGCCAATGAGATAACACCT+TGG 0.659744 6.2:-5701939 None:intergenic
CGATTTAGTTACCTCCGCAG+GGG 0.662302 6.2:-5702001 None:intergenic
TGCATTTAGCATGAATAACG+GGG 0.669690 6.2:-5702617 None:intergenic
AATTAGACCATGACTAACAG+TGG 0.672174 6.2:-5701560 None:intergenic
GAACATGGTGTCGAGAACAA+TGG 0.676475 6.2:+5701604 MS.gene030993:CDS
TGATTTAGTTACCTCCGCAG+GGG 0.679811 6.2:-5702034 None:intergenic
GGTAGAGCATGGCCAGCTGG+AGG 0.682509 6.2:-5701826 None:intergenic
TTCATGGAAGAATACCGAAG+AGG 0.683939 6.2:+5701288 MS.gene030993:CDS
CAATTTAGTTACCTCCGCAG+GGG 0.688755 6.2:-5701968 None:intergenic
ATTGGCTAATCAAGCCCCTG+CGG 0.691379 6.2:+5701954 MS.gene030993:CDS
GATGTGGCTTAAAGGTGCCG+AGG 0.696373 6.2:+5702362 MS.gene030993:CDS
GGTTTGTGAGTGAGACGATG+TGG 0.711325 6.2:+5702346 MS.gene030993:CDS
ATTGACTAATCAAACCCCTG+CGG 0.769066 6.2:+5701987 MS.gene030993:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAATATAATAACAAAAT+TGG - chr6.2:5702115-5702134 None:intergenic 10.0%
!! TGTTATTATATTATGTTTGT+AGG + chr6.2:5702119-5702138 MS.gene030993:intron 15.0%
!! GTGATATAAAAATTGAACTA+AGG - chr6.2:5702062-5702081 None:intergenic 20.0%
!!! TTATGTTTGTAGGATTTTAT+TGG + chr6.2:5702129-5702148 MS.gene030993:intron 20.0%
! AAAACTGATGAAGAATTTGT+TGG - chr6.2:5701151-5701170 None:intergenic 25.0%
! CAAAATACATGTGTATTATG+TGG + chr6.2:5702480-5702499 MS.gene030993:CDS 25.0%
!! CACATAATACACATGTATTT+TGG - chr6.2:5702482-5702501 None:intergenic 25.0%
!!! TTAGCATTTATTGATTCGAA+TGG - chr6.2:5701535-5701554 None:intergenic 25.0%
AAAGAAAGAAGATGAAGAGT+TGG + chr6.2:5702437-5702456 MS.gene030993:CDS 30.0%
AAATTAGAATATCCGACAGT+TGG - chr6.2:5701901-5701920 None:intergenic 30.0%
GAATATTTGGATCAAACTCA+AGG - chr6.2:5702155-5702174 None:intergenic 30.0%
GGTACGCAATTAAACAATAA+TGG - chr6.2:5702094-5702113 None:intergenic 30.0%
GTTTGATCCAAATATTCTCA+AGG + chr6.2:5702158-5702177 MS.gene030993:CDS 30.0%
TCTAGGAAAATCACCATATA+AGG - chr6.2:5702208-5702227 None:intergenic 30.0%
TCTGCATTTAGCATGAATAA+CGG - chr6.2:5702622-5702641 None:intergenic 30.0%
! AAGAGTTGTTTCCAATTCTT+TGG - chr6.2:5701795-5701814 None:intergenic 30.0%
! ATCTTCTTTCTTTTCTTCAG+TGG - chr6.2:5702430-5702449 None:intergenic 30.0%
! CGCAATTAAACAATAATGGA+AGG - chr6.2:5702090-5702109 None:intergenic 30.0%
! TAATTTGATTAGTTCACTCG+TGG + chr6.2:5701915-5701934 MS.gene030993:CDS 30.0%
!! TCATCAAAACATCTTTTTCG+CGG - chr6.2:5701184-5701203 None:intergenic 30.0%
AATACTACCACTGTTAGTCA+TGG + chr6.2:5701553-5701572 MS.gene030993:CDS 35.0%
AATTAGACCATGACTAACAG+TGG - chr6.2:5701563-5701582 None:intergenic 35.0%
CGAAAAGACAAGAAACTTCA+TGG + chr6.2:5701272-5701291 MS.gene030993:CDS 35.0%
CTGCATTTAGCATGAATAAC+GGG - chr6.2:5702621-5702640 None:intergenic 35.0%
GAAAATCACCATATAAGGCA+CGG - chr6.2:5702203-5702222 None:intergenic 35.0%
GCTCATCTTTGGATTTGAAT+CGG - chr6.2:5702251-5702270 None:intergenic 35.0%
GGATTCTTCGATGGATATAT+AGG - chr6.2:5701502-5701521 None:intergenic 35.0%
TAGGCATCAATTAGAGCTAT+TGG - chr6.2:5701244-5701263 None:intergenic 35.0%
TCACTGTAAAACTCCTCAAA+AGG - chr6.2:5702510-5702529 None:intergenic 35.0%
TCAGTATTAGAATTGAGACC+AGG - chr6.2:5701409-5701428 None:intergenic 35.0%
TCTTCGATGGATATATAGGA+GGG - chr6.2:5701498-5701517 None:intergenic 35.0%
TGACGAACCTTGAGAATATT+TGG - chr6.2:5702168-5702187 None:intergenic 35.0%
TGAGATGGAAAAAACTGGAA+AGG - chr6.2:5701688-5701707 None:intergenic 35.0%
TGCATTTAGCATGAATAACG+GGG - chr6.2:5702620-5702639 None:intergenic 35.0%
TTATTCCATTAGGCGCATTA+AGG - chr6.2:5702569-5702588 None:intergenic 35.0%
TTCTTCGATGGATATATAGG+AGG - chr6.2:5701499-5701518 None:intergenic 35.0%
TTGTTTCCAATTCTTTGGTC+TGG - chr6.2:5701790-5701809 None:intergenic 35.0%
! ATGCCTGTTGTTATTCCATT+AGG - chr6.2:5702579-5702598 None:intergenic 35.0%
! ATTATGTGGAGAACCTTTTG+AGG + chr6.2:5702494-5702513 MS.gene030993:CDS 35.0%
! GGAGTTTTACAGTGATGAAA+CGG + chr6.2:5702515-5702534 MS.gene030993:CDS 35.0%
! TTTCTTTTCTTCAGTGGTCT+CGG - chr6.2:5702424-5702443 None:intergenic 35.0%
!! ATAGCTCTAATTGATGCCTA+TGG + chr6.2:5701244-5701263 MS.gene030993:CDS 35.0%
!! GATTCTGAGATGGAAAAAAC+TGG - chr6.2:5701693-5701712 None:intergenic 35.0%
AGCCAATGAGATAACACCTT+GGG - chr6.2:5701941-5701960 None:intergenic 40.0%
ATCCATCGAAGAATCCTGTT+AGG + chr6.2:5701506-5701525 MS.gene030993:CDS 40.0%
ATTCGGATGAGGTAGAATCT+GGG - chr6.2:5701851-5701870 None:intergenic 40.0%
ATTGACTAATCAAACCCCTG+CGG + chr6.2:5701987-5702006 MS.gene030993:CDS 40.0%
CAATTCACTTTGCGAAGACA+TGG + chr6.2:5701724-5701743 MS.gene030993:CDS 40.0%
CATCTTTGGATTTGAATCGG+AGG - chr6.2:5702248-5702267 None:intergenic 40.0%
GAATAACAACAGGCATAGAC+AGG + chr6.2:5702583-5702602 MS.gene030993:CDS 40.0%
GTATACCTTAATGCGCCTAA+TGG + chr6.2:5702561-5702580 MS.gene030993:CDS 40.0%
TAGCCAATGAGATAACACCT+TGG - chr6.2:5701942-5701961 None:intergenic 40.0%
TCAATTTAGTTACCTCCGCA+GGG - chr6.2:5701972-5701991 None:intergenic 40.0%
TCTGTAATCCGTGCCTTATA+TGG + chr6.2:5702192-5702211 MS.gene030993:CDS 40.0%
TTCATGGAAGAATACCGAAG+AGG + chr6.2:5701288-5701307 MS.gene030993:CDS 40.0%
TTCCTAACAGGATTCTTCGA+TGG - chr6.2:5701511-5701530 None:intergenic 40.0%
TTGATTTAGTTACCTCCGCA+GGG - chr6.2:5702038-5702057 None:intergenic 40.0%
! ATTGATTTAGTTACCTCCGC+AGG - chr6.2:5702039-5702058 None:intergenic 40.0%
! GATTCGAATGGATTCCTAAC+AGG - chr6.2:5701523-5701542 None:intergenic 40.0%
! GTTTTACAGTGATGAAACGG+AGG + chr6.2:5702518-5702537 MS.gene030993:CDS 40.0%
! TGCATTTGCTGCAATAGTAG+CGG - chr6.2:5701362-5701381 None:intergenic 40.0%
! TTGTCTTTTCGCACTACCAT+AGG - chr6.2:5701263-5701282 None:intergenic 40.0%
!! AGAGCTATTGGATTTTGACG+AGG - chr6.2:5701232-5701251 None:intergenic 40.0%
!!! ACATGTATTTTGGTCCTCGT+CGG - chr6.2:5702472-5702491 None:intergenic 40.0%
AATATCCGACAGTTGGCTGT+TGG - chr6.2:5701894-5701913 None:intergenic 45.0%
AGATGAAGAGTTGGCTGTTC+CGG + chr6.2:5702446-5702465 MS.gene030993:CDS 45.0%
AGTGAGACGATGTGGCTTAA+AGG + chr6.2:5702354-5702373 MS.gene030993:CDS 45.0%
ATGCAACTTCTTCAGCGTCA+AGG + chr6.2:5701377-5701396 MS.gene030993:CDS 45.0%
ATGGAAGAATACCGAAGAGG+AGG + chr6.2:5701291-5701310 MS.gene030993:CDS 45.0%
ATTCTACCTCATCCGAATCC+TGG + chr6.2:5701853-5701872 MS.gene030993:CDS 45.0%
CAATTTAGTTACCTCCGCAG+GGG - chr6.2:5701971-5701990 None:intergenic 45.0%
CCAATTCTTTGGTCTGGCAT+AGG - chr6.2:5701784-5701803 None:intergenic 45.0%
CCAATTGAACTCCTCCTCTT+CGG - chr6.2:5701305-5701324 None:intergenic 45.0%
CCATGTTCATGCACAGGAAT+AGG - chr6.2:5701592-5701611 None:intergenic 45.0%
CCTATGCCAGACCAAAGAAT+TGG + chr6.2:5701781-5701800 MS.gene030993:CDS 45.0%
CCTATTCCTGTGCATGAACA+TGG + chr6.2:5701589-5701608 MS.gene030993:CDS 45.0%
CGAAGAGGAGGAGTTCAATT+GGG + chr6.2:5701303-5701322 MS.gene030993:CDS 45.0%
GACACATTAGGACCAGGATT+CGG - chr6.2:5701868-5701887 None:intergenic 45.0%
GAGTTCAGCTATCTCAGCAA+CGG + chr6.2:5701202-5701221 MS.gene030993:CDS 45.0%
GATTCGGATGAGGTAGAATC+TGG - chr6.2:5701852-5701871 None:intergenic 45.0%
GCGCCTAATGGAATAACAAC+AGG + chr6.2:5702573-5702592 MS.gene030993:CDS 45.0%
GTCAATTTAGTTACCTCCGC+AGG - chr6.2:5701973-5701992 None:intergenic 45.0%
TGATTTAGTTACCTCCGCAG+GGG - chr6.2:5702037-5702056 None:intergenic 45.0%
TGCAACTTCTTCAGCGTCAA+GGG + chr6.2:5701378-5701397 MS.gene030993:CDS 45.0%
TTCGGATGAGGTAGAATCTG+GGG - chr6.2:5701850-5701869 None:intergenic 45.0%
! ATTTGTTGGCGTTTCTCTCC+TGG - chr6.2:5701137-5701156 None:intergenic 45.0%
! GAACATGGTGTCGAGAACAA+TGG + chr6.2:5701604-5701623 MS.gene030993:CDS 45.0%
! GCATTTGCTGCAATAGTAGC+GGG - chr6.2:5701361-5701380 None:intergenic 45.0%
! TCTAAAGTTGCTGGCGAAAC+TGG - chr6.2:5701442-5701461 None:intergenic 45.0%
! TTTTCTTCAGTGGTCTCGGT+TGG - chr6.2:5702420-5702439 None:intergenic 45.0%
AAAGTGAATTGCGACGCTGC+TGG - chr6.2:5701715-5701734 None:intergenic 50.0%
AACAGGTCGTGCATTTGGCA+GGG - chr6.2:5701752-5701771 None:intergenic 50.0%
ACAGTGATGAAACGGAGGAG+TGG + chr6.2:5702523-5702542 MS.gene030993:CDS 50.0%
ACGGAGGAGTGGATGTATAG+AGG + chr6.2:5702534-5702553 MS.gene030993:CDS 50.0%
ACTCACAAACCACTTGCGAG+AGG - chr6.2:5702337-5702356 None:intergenic 50.0%
AGATGAGCACAGCAGTCACA+TGG + chr6.2:5702263-5702282 MS.gene030993:CDS 50.0%
AGCACAGCAGTCACATGGAT+TGG + chr6.2:5702268-5702287 MS.gene030993:CDS 50.0%
ATGATTCCGACACCAGCAAC+TGG + chr6.2:5701331-5701350 MS.gene030993:CDS 50.0%
ATTAGTTCACTCGTGGCCCA+AGG + chr6.2:5701922-5701941 MS.gene030993:CDS 50.0%
ATTGGCTAATCAAGCCCCTG+CGG + chr6.2:5701954-5701973 MS.gene030993:CDS 50.0%
CCACAAGTTGTGCACTGTCT+AGG - chr6.2:5702225-5702244 None:intergenic 50.0%
CCCTGCGGAGGTAACTAAAT+CGG + chr6.2:5701969-5701988 MS.gene030993:CDS 50.0%
CCGAAGAGGAGGAGTTCAAT+TGG + chr6.2:5701302-5701321 MS.gene030993:CDS 50.0%
CCGATTTAGTTACCTCCGCA+GGG - chr6.2:5702005-5702024 None:intergenic 50.0%
CCTAGACAGTGCACAACTTG+TGG + chr6.2:5702222-5702241 MS.gene030993:CDS 50.0%
CGATTTAGTTACCTCCGCAG+GGG - chr6.2:5702004-5702023 None:intergenic 50.0%
CTCACAAACCACTTGCGAGA+GGG - chr6.2:5702336-5702355 None:intergenic 50.0%
CTTTGGTCTGGCATAGGAAG+TGG - chr6.2:5701778-5701797 None:intergenic 50.0%
GAAAGGCTGTGTTTGTCCAC+TGG - chr6.2:5701671-5701690 None:intergenic 50.0%
GATGGATATATAGGAGGGCG+TGG - chr6.2:5701493-5701512 None:intergenic 50.0%
GCGTGGAGCATGCACATTTA+CGG - chr6.2:5701476-5701495 None:intergenic 50.0%
GGAGCATGCACATTTACGGA+GGG - chr6.2:5701472-5701491 None:intergenic 50.0%
GGCATAACAGGTCGTGCATT+TGG - chr6.2:5701757-5701776 None:intergenic 50.0%
GGCATAGGAAGTGGCATAAC+AGG - chr6.2:5701769-5701788 None:intergenic 50.0%
GGTTTGTGAGTGAGACGATG+TGG + chr6.2:5702346-5702365 MS.gene030993:CDS 50.0%
GTCTCGGTTGGCAAAAAACC+TGG - chr6.2:5702408-5702427 None:intergenic 50.0%
GTGACTGCTGTGCTCATCTT+TGG - chr6.2:5702262-5702281 None:intergenic 50.0%
TAACAGGTCGTGCATTTGGC+AGG - chr6.2:5701753-5701772 None:intergenic 50.0%
TCAAGCCAACAGCCAACTGT+CGG + chr6.2:5701886-5701905 MS.gene030993:CDS 50.0%
TCGACACCATGTTCATGCAC+AGG - chr6.2:5701598-5701617 None:intergenic 50.0%
TGACTTGACTCCCAATGCCT+CGG - chr6.2:5702382-5702401 None:intergenic 50.0%
TGATTCCGACACCAGCAACT+GGG + chr6.2:5701332-5701351 MS.gene030993:CDS 50.0%
TGGAGCATGCACATTTACGG+AGG - chr6.2:5701473-5701492 None:intergenic 50.0%
TGGCTTGACACATTAGGACC+AGG - chr6.2:5701874-5701893 None:intergenic 50.0%
TTAGGACCAGGATTCGGATG+AGG - chr6.2:5701862-5701881 None:intergenic 50.0%
TTGCTGGCGAAACTGGTGAA+TGG - chr6.2:5701435-5701454 None:intergenic 50.0%
! CGCCAGCAACTTTAGAAACG+AGG + chr6.2:5701446-5701465 MS.gene030993:CDS 50.0%
! GGCCCAAGGTGTTATCTCAT+TGG + chr6.2:5701936-5701955 MS.gene030993:CDS 50.0%
! GTAGAATCTGGGGTAGAGCA+TGG - chr6.2:5701840-5701859 None:intergenic 50.0%
!! CTTAAAGGTGCCGAGGCATT+GGG + chr6.2:5702369-5702388 MS.gene030993:CDS 50.0%
!! GGCCTCGTTTCTAAAGTTGC+TGG - chr6.2:5701451-5701470 None:intergenic 50.0%
!! GGCTGTTGGCTTGACACATT+AGG - chr6.2:5701880-5701899 None:intergenic 50.0%
ACAGGTCGTGCATTTGGCAG+GGG - chr6.2:5701751-5701770 None:intergenic 55.0%
AGCAGAAACCCTCTCGCAAG+TGG + chr6.2:5702325-5702344 MS.gene030993:CDS 55.0%
ATCGGCTAATCAAGCCCCTG+CGG + chr6.2:5702020-5702039 MS.gene030993:CDS 55.0%
GACTAATCAAACCCCTGCGG+AGG + chr6.2:5701990-5702009 MS.gene030993:CDS 55.0%
GCGAGTTAGGCAACTGATGC+AGG - chr6.2:5701645-5701664 None:intergenic 55.0%
GGCATAGACAGGTCGCAGTT+AGG + chr6.2:5702594-5702613 MS.gene030993:CDS 55.0%
GGCTGTGTTTGTCCACTGGT+TGG - chr6.2:5701667-5701686 None:intergenic 55.0%
TTCCGACCTTTACCTCCAGC+TGG + chr6.2:5701814-5701833 MS.gene030993:CDS 55.0%
TTGCCTAACTCGCCAACCAG+TGG + chr6.2:5701652-5701671 MS.gene030993:CDS 55.0%
TTGGGAGTCAAGTCAGCTCC+AGG + chr6.2:5702387-5702406 MS.gene030993:CDS 55.0%
! GACGCTGCTGGATTCTGAGA+TGG - chr6.2:5701703-5701722 None:intergenic 55.0%
! GCCGATTTAGTTACCTCCGC+AGG - chr6.2:5702006-5702025 None:intergenic 55.0%
! TGTCCACTGGTTGGCGAGTT+AGG - chr6.2:5701658-5701677 None:intergenic 55.0%
!! GATGTGGCTTAAAGGTGCCG+AGG + chr6.2:5702362-5702381 MS.gene030993:CDS 55.0%
!! GCTTAAAGGTGCCGAGGCAT+TGG + chr6.2:5702368-5702387 MS.gene030993:CDS 55.0%
!! TCAGCGTCAAGGGTGTTTCC+TGG + chr6.2:5701388-5701407 MS.gene030993:CDS 55.0%
!!! GTATTTTGGTCCTCGTCGGC+CGG - chr6.2:5702468-5702487 None:intergenic 55.0%
CAGGTCGTGCATTTGGCAGG+GGG - chr6.2:5701750-5701769 None:intergenic 60.0%
GCATGGCCAGCTGGAGGTAA+AGG - chr6.2:5701823-5701842 None:intergenic 60.0%
GGCCAGCTGGAGGTAAAGGT+CGG - chr6.2:5701819-5701838 None:intergenic 60.0%
GGCTTCCCAGTTGCTGGTGT+CGG - chr6.2:5701340-5701359 None:intergenic 60.0%
GGCTAATCAAGCCCCTGCGG+AGG + chr6.2:5701957-5701976 MS.gene030993:CDS 65.0%
GGTAGAGCATGGCCAGCTGG+AGG - chr6.2:5701829-5701848 None:intergenic 65.0%
TGGGGTAGAGCATGGCCAGC+TGG - chr6.2:5701832-5701851 None:intergenic 65.0%
!! GTAGCGGGCTTCCCAGTTGC+TGG - chr6.2:5701346-5701365 None:intergenic 65.0%
GTTGGCTGTTCCGGCCGACG+AGG + chr6.2:5702455-5702474 MS.gene030993:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 5701127 5702647 5701127 ID=MS.gene030993
chr6.2 mRNA 5701127 5702647 5701127 ID=MS.gene030993.t1;Parent=MS.gene030993
chr6.2 exon 5701127 5702044 5701127 ID=MS.gene030993.t1.exon1;Parent=MS.gene030993.t1
chr6.2 CDS 5701127 5702044 5701127 ID=cds.MS.gene030993.t1;Parent=MS.gene030993.t1
chr6.2 exon 5702141 5702647 5702141 ID=MS.gene030993.t1.exon2;Parent=MS.gene030993.t1
chr6.2 CDS 5702141 5702647 5702141 ID=cds.MS.gene030993.t1;Parent=MS.gene030993.t1
Gene Sequence

>MS.gene030993

ATGCTTGCCAGGAGAGAAACGCCAACAAATTCTTCATCAGTTTTCTCACACTTTCCGCGAAAAAGATGTTTTGATGAGTTCAGCTATCTCAGCAACGGACAACCTCGTCAAAATCCAATAGCTCTAATTGATGCCTATGGTAGTGCGAAAAGACAAGAAACTTCATGGAAGAATACCGAAGAGGAGGAGTTCAATTGGGAAGATATGATTCCGACACCAGCAACTGGGAAGCCCGCTACTATTGCAGCAAATGCAACTTCTTCAGCGTCAAGGGTGTTTCCTGGTCTCAATTCTAATACTGAGTACCATTCACCAGTTTCGCCAGCAACTTTAGAAACGAGGCCCTCCGTAAATGTGCATGCTCCACGCCCTCCTATATATCCATCGAAGAATCCTGTTAGGAATCCATTCGAATCAATAAATGCTAATACTACCACTGTTAGTCATGGTCTAATTAATAGACCTATTCCTGTGCATGAACATGGTGTCGAGAACAATGGCATCAGTAAAAAAAACCTGCATCAGTTGCCTAACTCGCCAACCAGTGGACAAACACAGCCTTTCCAGTTTTTTCCATCTCAGAATCCAGCAGCGTCGCAATTCACTTTGCGAAGACATGGCCCCCTGCCAAATGCACGACCTGTTATGCCACTTCCTATGCCAGACCAAAGAATTGGAAACAACTCTTTCCGACCTTTACCTCCAGCTGGCCATGCTCTACCCCAGATTCTACCTCATCCGAATCCTGGTCCTAATGTGTCAAGCCAACAGCCAACTGTCGGATATTCTAATTTGATTAGTTCACTCGTGGCCCAAGGTGTTATCTCATTGGCTAATCAAGCCCCTGCGGAGGTAACTAAATTGACTAATCAAACCCCTGCGGAGGTAACTAAATCGGCTAATCAAGCCCCTGCGGAGGTAACTAAATCAATCCTTAGTTCAATTTTTATATCACATTTTCCTTCCATTATTGTTTAATTGCGTACCAATTTTGTTATTATATTATGTTTGTAGGATTTTATTGGCCTTGAGTTTGATCCAAATATTCTCAAGGTTCGTCATGAATCTGTAATCCGTGCCTTATATGGTGATTTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCAAAGATGAGCACAGCAGTCACATGGATTGGCATGTAACTAAGAATCGTATGTCTAAAAACAATAAGCAGAAACCCTCTCGCAAGTGGTTTGTGAGTGAGACGATGTGGCTTAAAGGTGCCGAGGCATTGGGAGTCAAGTCAGCTCCAGGTTTTTTGCCAACCGAGACCACTGAAGAAAAGAAAGAAGATGAAGAGTTGGCTGTTCCGGCCGACGAGGACCAAAATACATGTGTATTATGTGGAGAACCTTTTGAGGAGTTTTACAGTGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATACCTTAATGCGCCTAATGGAATAACAACAGGCATAGACAGGTCGCAGTTAGGCCCCGTTATTCATGCTAAATGCAGATCTTAA
Protein sequence

>MS.gene030993.t1

MLARRETPTNSSSVFSHFPRKRCFDEFSYLSNGQPRQNPIALIDAYGSAKRQETSWKNTEEEEFNWEDMIPTPATGKPATIAANATSSASRVFPGLNSNTEYHSPVSPATLETRPSVNVHAPRPPIYPSKNPVRNPFESINANTTTVSHGLINRPIPVHEHGVENNGISKKNLHQLPNSPTSGQTQPFQFFPSQNPAASQFTLRRHGPLPNARPVMPLPMPDQRIGNNSFRPLPPAGHALPQILPHPNPGPNVSSQQPTVGYSNLISSLVAQGVISLANQAPAEVTKLTNQTPAEVTKSANQAPAEDFIGLEFDPNILKVRHESVIRALYGDFPRQCTTCGLRFKSKDEHSSHMDWHVTKNRMSKNNKQKPSRKWFVSETMWLKGAEALGVKSAPGFLPTETTEEKKEDEELAVPADEDQNTCVLCGEPFEEFYSDETEEWMYRGAVYLNAPNGITTGIDRSQLGPVIHAKCRS