AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030994

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030994.t1 MTR_6g011450 65.794 535 83 12 15 474 304 813 0.0 622
MS.gene030994.t1 MTR_6g011450 65.794 535 83 12 15 474 166 675 0.0 619
MS.gene030994.t1 MTR_4g073340 59.735 529 104 11 6 474 15 494 0.0 528
MS.gene030994.t1 MTR_6g011470 74.615 260 15 2 216 474 1 210 6.65e-134 385
MS.gene030994.t1 MTR_1g061130 31.641 256 128 7 263 474 756 1008 1.80e-33 135
MS.gene030994.t1 MTR_1g061130 31.641 256 128 7 263 474 756 1008 1.82e-33 134
MS.gene030994.t1 MTR_7g103840 28.090 267 149 5 249 474 749 1013 2.89e-30 125
MS.gene030994.t1 MTR_7g103840 28.090 267 149 5 249 474 751 1015 3.25e-30 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030994.t1 AT4G04885 62.896 221 60 2 253 473 591 789 1.29e-90 293
MS.gene030994.t1 AT1G66500 36.176 340 172 15 159 472 66 386 5.33e-50 176
MS.gene030994.t1 AT5G43620 36.170 282 132 10 215 472 123 380 8.87e-49 172
MS.gene030994.t1 AT2G36480 32.222 180 109 4 293 472 776 942 2.01e-21 98.2
MS.gene030994.t1 AT2G36480 32.222 180 109 4 293 472 776 942 2.01e-21 98.2

Find 136 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACGAACCTTGAGAATATT+TGG 0.171658 6.2:-5716624 None:intergenic
GTGACTGCTGTGCTCATCTT+TGG 0.248435 6.2:-5716718 None:intergenic
ATGCCTGTTGTTATTCCATT+AGG 0.284934 6.2:-5717035 None:intergenic
TGTCCACTGGTTGGCGAGTT+AGG 0.324685 6.2:-5716114 None:intergenic
AAGAGTTGTTTCCGATTCTT+TGG 0.325210 6.2:-5716251 None:intergenic
TCAAAAGTTGCTGGCGAAAC+TGG 0.326718 6.2:-5715898 None:intergenic
TCTGTAATCCGTGGCTTATA+TGG 0.327106 6.2:+5716651 MS.gene030994:CDS
CCCTGCGGAGGTAACTAAAT+TGG 0.332168 6.2:+5716428 MS.gene030994:CDS
GATTCGAATGGATTCCTAAC+AGG 0.333615 6.2:-5715979 None:intergenic
TTAGCGTCAAGGGTGTTTCC+TGG 0.338545 6.2:+5715847 MS.gene030994:CDS
CGAAAAGACAAGAAACTTCA+TGG 0.371299 6.2:+5715731 MS.gene030994:CDS
GGTTGTTGGCTTGACACATT+AGG 0.372691 6.2:-5716336 None:intergenic
TAGGCATCAATTAGAGCTCT+TGG 0.388106 6.2:-5715700 None:intergenic
TCTGCATTTAGCATGAATAA+TGG 0.389208 6.2:-5717078 None:intergenic
ATGTGGAGCATGCACATTTA+CGG 0.390090 6.2:-5715932 None:intergenic
GATTCGGATGAGGTAGAATC+TGG 0.392316 6.2:-5716308 None:intergenic
ATGATTCCGACACCAGCAAC+TGG 0.398413 6.2:+5715790 MS.gene030994:CDS
GGATTCTTCGATGGATATAT+AGG 0.398722 6.2:-5715958 None:intergenic
GGCATAACAGGTCGTGCATT+TGG 0.398786 6.2:-5716213 None:intergenic
GGCATAGGAAGTGGCATAAC+AGG 0.399981 6.2:-5716225 None:intergenic
GTAGCGGGCTTCCCAGTTGC+TGG 0.407709 6.2:-5715802 None:intergenic
CCGAAGAGGAGGAGTTCAAT+TGG 0.408130 6.2:+5715761 MS.gene030994:CDS
GTATACCTCAATGCACCTAA+TGG 0.412791 6.2:+5717020 MS.gene030994:CDS
TAACAGGTCGTGCATTTGGC+AGG 0.413669 6.2:-5716209 None:intergenic
CCATGTTCATGCACAGGAAT+AGG 0.417748 6.2:-5716048 None:intergenic
GCTTAAAGGTGCCGAGGCAT+TGG 0.418088 6.2:+5716827 MS.gene030994:CDS
TTGTTTCCGATTCTTTGGTC+TGG 0.419863 6.2:-5716246 None:intergenic
ATTTGTTGGTGTTTCTCTCC+TGG 0.439045 6.2:-5715593 None:intergenic
AGTGAGACGATGTGGCTTAA+AGG 0.439793 6.2:+5716813 MS.gene030994:CDS
CCCTGCGGAGGTAACTAAAT+CGG 0.441235 6.2:+5716461 MS.gene030994:CDS
CCAATTGAACTCCTCCTCTT+CGG 0.441961 6.2:-5715761 None:intergenic
GCTCATCTTTGGATTTGAAT+CGG 0.447487 6.2:-5716707 None:intergenic
CTTAAAGGTGCCGAGGCATT+GGG 0.453885 6.2:+5716828 MS.gene030994:CDS
GCGAGTTAGGCAACTGATGC+AGG 0.458157 6.2:-5716101 None:intergenic
TTCCGACCTTTACCTCCAGC+TGG 0.468020 6.2:+5716273 MS.gene030994:CDS
GCATGGCCAGCTGGAGGTAA+AGG 0.470453 6.2:-5716279 None:intergenic
GCATTTGCTGCAATAGTAGC+GGG 0.472527 6.2:-5715817 None:intergenic
AATATCCGACAGTTGGTTGT+TGG 0.472704 6.2:-5716350 None:intergenic
AAAGAAAGAAGACGAAGAGT+TGG 0.473653 6.2:+5716896 MS.gene030994:CDS
CTTTGGTCTGGCATAGGAAG+TGG 0.476736 6.2:-5716234 None:intergenic
GCCAATTTAGTTACCTCCGC+AGG 0.478344 6.2:-5716429 None:intergenic
AAAGGAAGAAGATGCTTGCC+AGG 0.480340 6.2:+5715575 None:intergenic
GGCTTCCCAGTTGCTGGTGT+CGG 0.485684 6.2:-5715796 None:intergenic
GCCGATTTAGTTACCTCCGC+AGG 0.485908 6.2:-5716462 None:intergenic
GCACCTAATGGAATAACAAC+AGG 0.488809 6.2:+5717032 MS.gene030994:CDS
GACACATTAGGACCAGGATT+CGG 0.491699 6.2:-5716324 None:intergenic
ATTCTACCTCATCCGAATCC+TGG 0.497538 6.2:+5716312 MS.gene030994:CDS
CCGATTCTTTGGTCTGGCAT+AGG 0.499828 6.2:-5716240 None:intergenic
AACACCAACAAATTCTTCAT+CGG 0.500433 6.2:+5715603 MS.gene030994:CDS
TGGGGTAGAGCATGGCCAGC+TGG 0.501385 6.2:-5716288 None:intergenic
TGCAACTTCTTTAGCGTCAA+GGG 0.501704 6.2:+5715837 MS.gene030994:CDS
CGAAGAGGAGGAGTTCAATT+GGG 0.502140 6.2:+5715762 MS.gene030994:CDS
TTGGGAGTCAAGTCAGCTCC+AGG 0.502567 6.2:+5716846 MS.gene030994:CDS
GGCCTCGTTTCAAAAGTTGC+TGG 0.503897 6.2:-5715907 None:intergenic
AGCTAATGAGATAACACCTT+GGG 0.504555 6.2:-5716397 None:intergenic
TTAGCATTTATTGATTCGAA+TGG 0.504936 6.2:-5715991 None:intergenic
CCACAAGTTGTGCACTGTCT+AGG 0.505428 6.2:-5716681 None:intergenic
ATCCATCGAAGAATCCTGTT+AGG 0.507185 6.2:+5715965 MS.gene030994:CDS
TCACTGTAAAACATGTCAAA+AGG 0.507348 6.2:-5716966 None:intergenic
AAAACCGATGAAGAATTTGT+TGG 0.514034 6.2:-5715607 None:intergenic
AGAGCTCTAATTGATGCCTA+TGG 0.514260 6.2:+5715703 MS.gene030994:CDS
CAAAATACATGTGCATTATG+TGG 0.525790 6.2:+5716939 MS.gene030994:CDS
GGCATGGACAGGTCGCAGTT+AGG 0.525989 6.2:+5717053 MS.gene030994:CDS
ACAGTGATGAAACAGAGGAT+TGG 0.526805 6.2:+5716982 MS.gene030994:CDS
AGCACAGCAGTCACATGGAT+TGG 0.529243 6.2:+5716727 MS.gene030994:CDS
AAATTAGAATATCCGACAGT+TGG 0.529785 6.2:-5716357 None:intergenic
ATTGATTTAGTTACCTCCGC+AGG 0.532041 6.2:-5716495 None:intergenic
ACAGGTCGTGCATTTGGCAG+GGG 0.537469 6.2:-5716207 None:intergenic
CCTAGACAGTGCACAACTTG+TGG 0.539415 6.2:+5716681 MS.gene030994:CDS
GGCGGTGTTTGTCCACTGGT+TGG 0.543540 6.2:-5716123 None:intergenic
GATGGATATATAGGAGGATG+TGG 0.545020 6.2:-5715949 None:intergenic
AACAGGTCGTGCATTTGGCA+GGG 0.545446 6.2:-5716208 None:intergenic
GAAAGGCGGTGTTTGTCCAC+TGG 0.548147 6.2:-5716127 None:intergenic
GAATAACAACAGGCATGGAC+AGG 0.551052 6.2:+5717042 MS.gene030994:CDS
AGCAGAAACCCTCTCGCAAG+TGG 0.553269 6.2:+5716784 MS.gene030994:CDS
CCTATGCCAGACCAAAGAAT+CGG 0.556854 6.2:+5716240 MS.gene030994:CDS
ATTAGTTCACTCGTGGCCCA+AGG 0.558294 6.2:+5716381 MS.gene030994:CDS
CAGGTCGTGCATTTGGCAGG+GGG 0.562977 6.2:-5716206 None:intergenic
TTCCTAACAGGATTCTTCGA+TGG 0.563320 6.2:-5715967 None:intergenic
ATGCAACTTCTTTAGCGTCA+AGG 0.564881 6.2:+5715836 MS.gene030994:CDS
CCGATTTAGTTACCTCCGCA+GGG 0.567759 6.2:-5716461 None:intergenic
AAAGTGAATTGCGACGCTGC+TGG 0.570896 6.2:-5716171 None:intergenic
TGCATTTGCTGCAATAGTAG+CGG 0.574043 6.2:-5715818 None:intergenic
ATTCGGATGAGGTAGAATCT+GGG 0.576849 6.2:-5716307 None:intergenic
CTCACAAACCACTTGCGAGA+GGG 0.577171 6.2:-5716792 None:intergenic
TAATTTGATTAGTTCACTCG+TGG 0.577584 6.2:+5716374 MS.gene030994:CDS
TTAGGACCAGGATTCGGATG+AGG 0.577777 6.2:-5716318 None:intergenic
TGGCTTGACACATTAGGACC+AGG 0.578849 6.2:-5716330 None:intergenic
GAATATTTGGATCAAACTCA+AGG 0.580223 6.2:-5716611 None:intergenic
AGATGAGCACAGCAGTCACA+TGG 0.587427 6.2:+5716722 MS.gene030994:CDS
GTTTGATCCAAATATTCTCA+AGG 0.588305 6.2:+5716617 MS.gene030994:CDS
TCGACACCATGTTCATGCAC+AGG 0.588454 6.2:-5716054 None:intergenic
CCTATTCCTGTGCATGAACA+TGG 0.596190 6.2:+5716048 MS.gene030994:CDS
GAGTTCAGCTATCGCAGCAA+CGG 0.596554 6.2:+5715661 MS.gene030994:CDS
TTATTCCATTAGGTGCATTG+AGG 0.599937 6.2:-5717025 None:intergenic
GTAGAATCTGGGGTAGAGCA+TGG 0.600654 6.2:-5716296 None:intergenic
CATCTTTGGATTTGAATCGG+AGG 0.601375 6.2:-5716704 None:intergenic
TAATGGAATAACAACAGGCA+TGG 0.604751 6.2:+5717037 MS.gene030994:CDS
CCAATTTAGTTACCTCCGCA+GGG 0.606122 6.2:-5716428 None:intergenic
GGCTAATCAAACCCCTGCGG+AGG 0.607523 6.2:+5716449 MS.gene030994:CDS
TTGCCTAACTCGCCAACCAG+TGG 0.608662 6.2:+5716111 MS.gene030994:CDS
AATACTACCACTGTGAGTCA+TGG 0.609522 6.2:+5716012 MS.gene030994:CDS
GACGCTGCTGGATTCTGAGA+TGG 0.609727 6.2:-5716159 None:intergenic
TTCTTCGATGGATATATAGG+AGG 0.611513 6.2:-5715955 None:intergenic
TTGATTTAGTTACCTCCGCA+GGG 0.612955 6.2:-5716494 None:intergenic
AAAGTTGCTGGCGAAACTGG+TGG 0.614136 6.2:-5715895 None:intergenic
GGCCAGCTGGAGGTAAAGGT+CGG 0.614768 6.2:-5716275 None:intergenic
GAAAATCACCATATAAGCCA+CGG 0.623056 6.2:-5716659 None:intergenic
TGATTCCGACACCAGCAACT+GGG 0.627867 6.2:+5715791 MS.gene030994:CDS
AGGTCGTGCATTTGGCAGGG+GGG 0.628298 6.2:-5716205 None:intergenic
ATGGAAGAATACCGAAGAGG+AGG 0.631037 6.2:+5715750 MS.gene030994:CDS
ACTCACAAACCACTTGCGAG+AGG 0.633226 6.2:-5716793 None:intergenic
CGTCATAAATCTGTAATCCG+TGG 0.642310 6.2:+5716642 MS.gene030994:CDS
TGACTTGACTCCCAATGCCT+CGG 0.643816 6.2:-5716838 None:intergenic
TAGCTAATGAGATAACACCT+TGG 0.648926 6.2:-5716398 None:intergenic
AGCTAATCAAGCCCCTGCGG+AGG 0.650230 6.2:+5716416 MS.gene030994:CDS
TTCGGATGAGGTAGAATCTG+GGG 0.651800 6.2:-5716306 None:intergenic
GGCTAATCAAGCCCCTGCGG+AGG 0.653058 6.2:+5716482 MS.gene030994:CDS
ATCGGCTAATCAAGCCCCTG+CGG 0.657358 6.2:+5716479 MS.gene030994:CDS
TCAGTATTAGAATTGAGACC+AGG 0.658819 6.2:-5715865 None:intergenic
GTTGGCAGTTCCTGCCGACG+AGG 0.661438 6.2:+5716914 MS.gene030994:CDS
CGATTTAGTTACCTCCGCAG+GGG 0.662302 6.2:-5716460 None:intergenic
TCAAGCCAACAACCAACTGT+CGG 0.665451 6.2:+5716345 MS.gene030994:CDS
TGGAGCATGCACATTTACGG+AGG 0.667060 6.2:-5715929 None:intergenic
GGAGCATGCACATTTACGGA+GGG 0.676009 6.2:-5715928 None:intergenic
TGATTTAGTTACCTCCGCAG+GGG 0.679811 6.2:-5716493 None:intergenic
GGTAGAGCATGGCCAGCTGG+AGG 0.682509 6.2:-5716285 None:intergenic
TTCATGGAAGAATACCGAAG+AGG 0.683939 6.2:+5715747 MS.gene030994:CDS
GAACATGGTGTCGAGAACAA+TGG 0.686510 6.2:+5716063 MS.gene030994:CDS
CAATTTAGTTACCTCCGCAG+GGG 0.688755 6.2:-5716427 None:intergenic
ATTAGCTAATCAAGCCCCTG+CGG 0.693399 6.2:+5716413 MS.gene030994:CDS
GATGTGGCTTAAAGGTGCCG+AGG 0.696373 6.2:+5716821 MS.gene030994:CDS
TTGCTGGCGAAACTGGTGGA+TGG 0.703445 6.2:-5715891 None:intergenic
GGTTTGTGAGTGAGACGATG+TGG 0.711325 6.2:+5716805 MS.gene030994:CDS
ATTGGCTAATCAAACCCCTG+CGG 0.751609 6.2:+5716446 MS.gene030994:CDS
AATTAGACCATGACTCACAG+TGG 0.751691 6.2:-5716019 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAATATAATAACAAAAT+TGG - chr6.2:5716574-5716593 None:intergenic 10.0%
!! TGTTATTATATTATGTTTGT+AGG + chr6.2:5716578-5716597 MS.gene030994:intron 15.0%
!! GTGATATAAAAATTGAACTA+AGG - chr6.2:5716521-5716540 None:intergenic 20.0%
!!! TCATCAAAACATCTTTTTTT+CGG - chr6.2:5715643-5715662 None:intergenic 20.0%
!!! TTATGTTTGTAGGATTTTAT+TGG + chr6.2:5716588-5716607 MS.gene030994:intron 20.0%
!!! TTAGCATTTATTGATTCGAA+TGG - chr6.2:5715994-5716013 None:intergenic 25.0%
AAAACCGATGAAGAATTTGT+TGG - chr6.2:5715610-5715629 None:intergenic 30.0%
AAATTAGAATATCCGACAGT+TGG - chr6.2:5716360-5716379 None:intergenic 30.0%
AACACCAACAAATTCTTCAT+CGG + chr6.2:5715603-5715622 MS.gene030994:CDS 30.0%
CAAAATACATGTGCATTATG+TGG + chr6.2:5716939-5716958 MS.gene030994:CDS 30.0%
GAATATTTGGATCAAACTCA+AGG - chr6.2:5716614-5716633 None:intergenic 30.0%
GGTACGCAATTAAACAATAA+TGG - chr6.2:5716553-5716572 None:intergenic 30.0%
GTTTGATCCAAATATTCTCA+AGG + chr6.2:5716617-5716636 MS.gene030994:CDS 30.0%
TCACTGTAAAACATGTCAAA+AGG - chr6.2:5716969-5716988 None:intergenic 30.0%
TCTGCATTTAGCATGAATAA+TGG - chr6.2:5717081-5717100 None:intergenic 30.0%
! CGCAATTAAACAATAATGGA+AGG - chr6.2:5716549-5716568 None:intergenic 30.0%
! TAATTTGATTAGTTCACTCG+TGG + chr6.2:5716374-5716393 MS.gene030994:CDS 30.0%
AAAGAAAGAAGACGAAGAGT+TGG + chr6.2:5716896-5716915 MS.gene030994:CDS 35.0%
AGCTAATGAGATAACACCTT+GGG - chr6.2:5716400-5716419 None:intergenic 35.0%
CGAAAAGACAAGAAACTTCA+TGG + chr6.2:5715731-5715750 MS.gene030994:CDS 35.0%
GAAAATCACCATATAAGCCA+CGG - chr6.2:5716662-5716681 None:intergenic 35.0%
GCTCATCTTTGGATTTGAAT+CGG - chr6.2:5716710-5716729 None:intergenic 35.0%
GGATTCTTCGATGGATATAT+AGG - chr6.2:5715961-5715980 None:intergenic 35.0%
TAATGGAATAACAACAGGCA+TGG + chr6.2:5717037-5717056 MS.gene030994:CDS 35.0%
TAGCTAATGAGATAACACCT+TGG - chr6.2:5716401-5716420 None:intergenic 35.0%
TCAGTATTAGAATTGAGACC+AGG - chr6.2:5715868-5715887 None:intergenic 35.0%
TGACGAACCTTGAGAATATT+TGG - chr6.2:5716627-5716646 None:intergenic 35.0%
TGAGATGGAAAAAACTGGAA+AGG - chr6.2:5716147-5716166 None:intergenic 35.0%
TTATTCCATTAGGTGCATTG+AGG - chr6.2:5717028-5717047 None:intergenic 35.0%
TTCTTCGATGGATATATAGG+AGG - chr6.2:5715958-5715977 None:intergenic 35.0%
! AAGAGTTGTTTCCGATTCTT+TGG - chr6.2:5716254-5716273 None:intergenic 35.0%
! ATGCCTGTTGTTATTCCATT+AGG - chr6.2:5717038-5717057 None:intergenic 35.0%
! GTCTTCTTTCTTTTCTTCAG+TGG - chr6.2:5716889-5716908 None:intergenic 35.0%
! GTTTTACAGTGATGAAACAG+AGG + chr6.2:5716977-5716996 MS.gene030994:CDS 35.0%
! TTTCTTTTCTTCAGTGGTCT+CGG - chr6.2:5716883-5716902 None:intergenic 35.0%
!! GATTCTGAGATGGAAAAAAC+TGG - chr6.2:5716152-5716171 None:intergenic 35.0%
!!! ACATGTATTTTGATCCTCGT+CGG - chr6.2:5716931-5716950 None:intergenic 35.0%
AATACTACCACTGTGAGTCA+TGG + chr6.2:5716012-5716031 MS.gene030994:CDS 40.0%
AATATCCGACAGTTGGTTGT+TGG - chr6.2:5716353-5716372 None:intergenic 40.0%
AATTAGACCATGACTCACAG+TGG - chr6.2:5716022-5716041 None:intergenic 40.0%
ACAGTGATGAAACAGAGGAT+TGG + chr6.2:5716982-5717001 MS.gene030994:CDS 40.0%
ATCCATCGAAGAATCCTGTT+AGG + chr6.2:5715965-5715984 MS.gene030994:CDS 40.0%
ATGCAACTTCTTTAGCGTCA+AGG + chr6.2:5715836-5715855 MS.gene030994:CDS 40.0%
ATGTGGAGCATGCACATTTA+CGG - chr6.2:5715935-5715954 None:intergenic 40.0%
ATTCGGATGAGGTAGAATCT+GGG - chr6.2:5716310-5716329 None:intergenic 40.0%
CATCTTTGGATTTGAATCGG+AGG - chr6.2:5716707-5716726 None:intergenic 40.0%
CGTCATAAATCTGTAATCCG+TGG + chr6.2:5716642-5716661 MS.gene030994:CDS 40.0%
GATGGAAAAAACTGGAAAGG+CGG - chr6.2:5716144-5716163 None:intergenic 40.0%
GATGGATATATAGGAGGATG+TGG - chr6.2:5715952-5715971 None:intergenic 40.0%
GCACCTAATGGAATAACAAC+AGG + chr6.2:5717032-5717051 MS.gene030994:CDS 40.0%
GTATACCTCAATGCACCTAA+TGG + chr6.2:5717020-5717039 MS.gene030994:CDS 40.0%
TAGGCATCAATTAGAGCTCT+TGG - chr6.2:5715703-5715722 None:intergenic 40.0%
TCTGTAATCCGTGGCTTATA+TGG + chr6.2:5716651-5716670 MS.gene030994:CDS 40.0%
TGCAACTTCTTTAGCGTCAA+GGG + chr6.2:5715837-5715856 MS.gene030994:CDS 40.0%
TTCATGGAAGAATACCGAAG+AGG + chr6.2:5715747-5715766 MS.gene030994:CDS 40.0%
TTCCTAACAGGATTCTTCGA+TGG - chr6.2:5715970-5715989 None:intergenic 40.0%
TTGATTTAGTTACCTCCGCA+GGG - chr6.2:5716497-5716516 None:intergenic 40.0%
TTGTTTCCGATTCTTTGGTC+TGG - chr6.2:5716249-5716268 None:intergenic 40.0%
! AGAGCTCTAATTGATGCCTA+TGG + chr6.2:5715703-5715722 MS.gene030994:CDS 40.0%
! ATTGATTTAGTTACCTCCGC+AGG - chr6.2:5716498-5716517 None:intergenic 40.0%
! ATTTGTTGGTGTTTCTCTCC+TGG - chr6.2:5715596-5715615 None:intergenic 40.0%
! GATTCGAATGGATTCCTAAC+AGG - chr6.2:5715982-5716001 None:intergenic 40.0%
! TGCATTTGCTGCAATAGTAG+CGG - chr6.2:5715821-5715840 None:intergenic 40.0%
! TTGTCTTTTCGCACTACCAT+AGG - chr6.2:5715722-5715741 None:intergenic 40.0%
AGTGAGACGATGTGGCTTAA+AGG + chr6.2:5716813-5716832 MS.gene030994:CDS 45.0%
ATGGAAGAATACCGAAGAGG+AGG + chr6.2:5715750-5715769 MS.gene030994:CDS 45.0%
ATTAGCTAATCAAGCCCCTG+CGG + chr6.2:5716413-5716432 MS.gene030994:CDS 45.0%
ATTCTACCTCATCCGAATCC+TGG + chr6.2:5716312-5716331 MS.gene030994:CDS 45.0%
ATTGGCTAATCAAACCCCTG+CGG + chr6.2:5716446-5716465 MS.gene030994:CDS 45.0%
CAATTTAGTTACCTCCGCAG+GGG - chr6.2:5716430-5716449 None:intergenic 45.0%
CCAATTGAACTCCTCCTCTT+CGG - chr6.2:5715764-5715783 None:intergenic 45.0%
CCAATTTAGTTACCTCCGCA+GGG - chr6.2:5716431-5716450 None:intergenic 45.0%
CCATGTTCATGCACAGGAAT+AGG - chr6.2:5716051-5716070 None:intergenic 45.0%
CCTATGCCAGACCAAAGAAT+CGG + chr6.2:5716240-5716259 MS.gene030994:CDS 45.0%
CCTATTCCTGTGCATGAACA+TGG + chr6.2:5716048-5716067 MS.gene030994:CDS 45.0%
CGAAGAGGAGGAGTTCAATT+GGG + chr6.2:5715762-5715781 MS.gene030994:CDS 45.0%
GAATAACAACAGGCATGGAC+AGG + chr6.2:5717042-5717061 MS.gene030994:CDS 45.0%
GACACATTAGGACCAGGATT+CGG - chr6.2:5716327-5716346 None:intergenic 45.0%
GATTCGGATGAGGTAGAATC+TGG - chr6.2:5716311-5716330 None:intergenic 45.0%
TCAAAAGTTGCTGGCGAAAC+TGG - chr6.2:5715901-5715920 None:intergenic 45.0%
TCAAGCCAACAACCAACTGT+CGG + chr6.2:5716345-5716364 MS.gene030994:CDS 45.0%
TGATTTAGTTACCTCCGCAG+GGG - chr6.2:5716496-5716515 None:intergenic 45.0%
TTCGGATGAGGTAGAATCTG+GGG - chr6.2:5716309-5716328 None:intergenic 45.0%
! GAACATGGTGTCGAGAACAA+TGG + chr6.2:5716063-5716082 MS.gene030994:CDS 45.0%
! GCATTTGCTGCAATAGTAGC+GGG - chr6.2:5715820-5715839 None:intergenic 45.0%
! TTTTCTTCAGTGGTCTCGGT+TGG - chr6.2:5716879-5716898 None:intergenic 45.0%
!! AGAGCTCTTGGATTTTGACG+AGG - chr6.2:5715691-5715710 None:intergenic 45.0%
!! GGTTGTTGGCTTGACACATT+AGG - chr6.2:5716339-5716358 None:intergenic 45.0%
AAAGTGAATTGCGACGCTGC+TGG - chr6.2:5716174-5716193 None:intergenic 50.0%
AAAGTTGCTGGCGAAACTGG+TGG - chr6.2:5715898-5715917 None:intergenic 50.0%
AACAGGTCGTGCATTTGGCA+GGG - chr6.2:5716211-5716230 None:intergenic 50.0%
ACTCACAAACCACTTGCGAG+AGG - chr6.2:5716796-5716815 None:intergenic 50.0%
AGATGAGCACAGCAGTCACA+TGG + chr6.2:5716722-5716741 MS.gene030994:CDS 50.0%
AGCACAGCAGTCACATGGAT+TGG + chr6.2:5716727-5716746 MS.gene030994:CDS 50.0%
ATGATTCCGACACCAGCAAC+TGG + chr6.2:5715790-5715809 MS.gene030994:CDS 50.0%
ATTAGTTCACTCGTGGCCCA+AGG + chr6.2:5716381-5716400 MS.gene030994:CDS 50.0%
CCACAAGTTGTGCACTGTCT+AGG - chr6.2:5716684-5716703 None:intergenic 50.0%
CCCTGCGGAGGTAACTAAAT+CGG + chr6.2:5716428-5716447 MS.gene030994:CDS 50.0%
CCCTGCGGAGGTAACTAAAT+TGG + chr6.2:5716428-5716447 MS.gene030994:CDS 50.0%
CCGAAGAGGAGGAGTTCAAT+TGG + chr6.2:5715761-5715780 MS.gene030994:CDS 50.0%
CCGATTCTTTGGTCTGGCAT+AGG - chr6.2:5716243-5716262 None:intergenic 50.0%
CCGATTTAGTTACCTCCGCA+GGG - chr6.2:5716464-5716483 None:intergenic 50.0%
CCTAGACAGTGCACAACTTG+TGG + chr6.2:5716681-5716700 MS.gene030994:CDS 50.0%
CGATTTAGTTACCTCCGCAG+GGG - chr6.2:5716463-5716482 None:intergenic 50.0%
CTCACAAACCACTTGCGAGA+GGG - chr6.2:5716795-5716814 None:intergenic 50.0%
CTTTGGTCTGGCATAGGAAG+TGG - chr6.2:5716237-5716256 None:intergenic 50.0%
GAGTTCAGCTATCGCAGCAA+CGG + chr6.2:5715661-5715680 MS.gene030994:CDS 50.0%
GCCAATTTAGTTACCTCCGC+AGG - chr6.2:5716432-5716451 None:intergenic 50.0%
GGAGCATGCACATTTACGGA+GGG - chr6.2:5715931-5715950 None:intergenic 50.0%
GGCATAACAGGTCGTGCATT+TGG - chr6.2:5716216-5716235 None:intergenic 50.0%
GGCATAGGAAGTGGCATAAC+AGG - chr6.2:5716228-5716247 None:intergenic 50.0%
GGCCTCGTTTCAAAAGTTGC+TGG - chr6.2:5715910-5715929 None:intergenic 50.0%
GGTTTGTGAGTGAGACGATG+TGG + chr6.2:5716805-5716824 MS.gene030994:CDS 50.0%
GTCTCGGTTGGCAAAAAACC+TGG - chr6.2:5716867-5716886 None:intergenic 50.0%
GTGACTGCTGTGCTCATCTT+TGG - chr6.2:5716721-5716740 None:intergenic 50.0%
TAACAGGTCGTGCATTTGGC+AGG - chr6.2:5716212-5716231 None:intergenic 50.0%
TCGACACCATGTTCATGCAC+AGG - chr6.2:5716057-5716076 None:intergenic 50.0%
TGACTTGACTCCCAATGCCT+CGG - chr6.2:5716841-5716860 None:intergenic 50.0%
TGATTCCGACACCAGCAACT+GGG + chr6.2:5715791-5715810 MS.gene030994:CDS 50.0%
TGGAGCATGCACATTTACGG+AGG - chr6.2:5715932-5715951 None:intergenic 50.0%
TGGCTTGACACATTAGGACC+AGG - chr6.2:5716333-5716352 None:intergenic 50.0%
TTAGGACCAGGATTCGGATG+AGG - chr6.2:5716321-5716340 None:intergenic 50.0%
! GTAGAATCTGGGGTAGAGCA+TGG - chr6.2:5716299-5716318 None:intergenic 50.0%
!! CTTAAAGGTGCCGAGGCATT+GGG + chr6.2:5716828-5716847 MS.gene030994:CDS 50.0%
!! TTAGCGTCAAGGGTGTTTCC+TGG + chr6.2:5715847-5715866 MS.gene030994:CDS 50.0%
!!! CGCCAGCAACTTTTGAAACG+AGG + chr6.2:5715905-5715924 MS.gene030994:CDS 50.0%
!!! GTATTTTGATCCTCGTCGGC+AGG - chr6.2:5716927-5716946 None:intergenic 50.0%
ACAGGTCGTGCATTTGGCAG+GGG - chr6.2:5716210-5716229 None:intergenic 55.0%
AGCAGAAACCCTCTCGCAAG+TGG + chr6.2:5716784-5716803 MS.gene030994:CDS 55.0%
ATCGGCTAATCAAGCCCCTG+CGG + chr6.2:5716479-5716498 MS.gene030994:CDS 55.0%
GAAAGGCGGTGTTTGTCCAC+TGG - chr6.2:5716130-5716149 None:intergenic 55.0%
GCGAGTTAGGCAACTGATGC+AGG - chr6.2:5716104-5716123 None:intergenic 55.0%
TTCCGACCTTTACCTCCAGC+TGG + chr6.2:5716273-5716292 MS.gene030994:CDS 55.0%
TTGCCTAACTCGCCAACCAG+TGG + chr6.2:5716111-5716130 MS.gene030994:CDS 55.0%
TTGCTGGCGAAACTGGTGGA+TGG - chr6.2:5715894-5715913 None:intergenic 55.0%
TTGGGAGTCAAGTCAGCTCC+AGG + chr6.2:5716846-5716865 MS.gene030994:CDS 55.0%
! GACGCTGCTGGATTCTGAGA+TGG - chr6.2:5716162-5716181 None:intergenic 55.0%
! GCCGATTTAGTTACCTCCGC+AGG - chr6.2:5716465-5716484 None:intergenic 55.0%
! TGTCCACTGGTTGGCGAGTT+AGG - chr6.2:5716117-5716136 None:intergenic 55.0%
!! GATGTGGCTTAAAGGTGCCG+AGG + chr6.2:5716821-5716840 MS.gene030994:CDS 55.0%
!! GCTTAAAGGTGCCGAGGCAT+TGG + chr6.2:5716827-5716846 MS.gene030994:CDS 55.0%
AGCTAATCAAGCCCCTGCGG+AGG + chr6.2:5716416-5716435 MS.gene030994:CDS 60.0%
AGGTCGTGCATTTGGCAGGG+GGG - chr6.2:5716208-5716227 None:intergenic 60.0%
CAGGTCGTGCATTTGGCAGG+GGG - chr6.2:5716209-5716228 None:intergenic 60.0%
GCATGGCCAGCTGGAGGTAA+AGG - chr6.2:5716282-5716301 None:intergenic 60.0%
GGCATGGACAGGTCGCAGTT+AGG + chr6.2:5717053-5717072 MS.gene030994:CDS 60.0%
GGCCAGCTGGAGGTAAAGGT+CGG - chr6.2:5716278-5716297 None:intergenic 60.0%
GGCGGTGTTTGTCCACTGGT+TGG - chr6.2:5716126-5716145 None:intergenic 60.0%
GGCTAATCAAACCCCTGCGG+AGG + chr6.2:5716449-5716468 MS.gene030994:CDS 60.0%
GGCTTCCCAGTTGCTGGTGT+CGG - chr6.2:5715799-5715818 None:intergenic 60.0%
! TTTGGCAGGGGGGCATGTCT+TGG - chr6.2:5716198-5716217 None:intergenic 60.0%
GGCTAATCAAGCCCCTGCGG+AGG + chr6.2:5716482-5716501 MS.gene030994:CDS 65.0%
GGTAGAGCATGGCCAGCTGG+AGG - chr6.2:5716288-5716307 None:intergenic 65.0%
GTTGGCAGTTCCTGCCGACG+AGG + chr6.2:5716914-5716933 MS.gene030994:CDS 65.0%
TGGGGTAGAGCATGGCCAGC+TGG - chr6.2:5716291-5716310 None:intergenic 65.0%
!! GTAGCGGGCTTCCCAGTTGC+TGG - chr6.2:5715805-5715824 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 5715586 5717106 5715586 ID=MS.gene030994
chr6.2 mRNA 5715586 5717106 5715586 ID=MS.gene030994.t1;Parent=MS.gene030994
chr6.2 exon 5715586 5716503 5715586 ID=MS.gene030994.t1.exon1;Parent=MS.gene030994.t1
chr6.2 CDS 5715586 5716503 5715586 ID=cds.MS.gene030994.t1;Parent=MS.gene030994.t1
chr6.2 exon 5716600 5717106 5716600 ID=MS.gene030994.t1.exon2;Parent=MS.gene030994.t1
chr6.2 CDS 5716600 5717106 5716600 ID=cds.MS.gene030994.t1;Parent=MS.gene030994.t1
Gene Sequence

>MS.gene030994

ATGCTTGCCAGGAGAGAAACACCAACAAATTCTTCATCGGTTTTCTCACACTTTCCGAAAAAAAGATGTTTTGATGAGTTCAGCTATCGCAGCAACGGACAACCTCGTCAAAATCCAAGAGCTCTAATTGATGCCTATGGTAGTGCGAAAAGACAAGAAACTTCATGGAAGAATACCGAAGAGGAGGAGTTCAATTGGGAAGATATGATTCCGACACCAGCAACTGGGAAGCCCGCTACTATTGCAGCAAATGCAACTTCTTTAGCGTCAAGGGTGTTTCCTGGTCTCAATTCTAATACTGAGTACCATCCACCAGTTTCGCCAGCAACTTTTGAAACGAGGCCCTCCGTAAATGTGCATGCTCCACATCCTCCTATATATCCATCGAAGAATCCTGTTAGGAATCCATTCGAATCAATAAATGCTAATACTACCACTGTGAGTCATGGTCTAATTAATAGACCTATTCCTGTGCATGAACATGGTGTCGAGAACAATGGTATCAGTAAAAGAAACCTGCATCAGTTGCCTAACTCGCCAACCAGTGGACAAACACCGCCTTTCCAGTTTTTTCCATCTCAGAATCCAGCAGCGTCGCAATTCACTTTGCCAAGACATGCCCCCCTGCCAAATGCACGACCTGTTATGCCACTTCCTATGCCAGACCAAAGAATCGGAAACAACTCTTTCCGACCTTTACCTCCAGCTGGCCATGCTCTACCCCAGATTCTACCTCATCCGAATCCTGGTCCTAATGTGTCAAGCCAACAACCAACTGTCGGATATTCTAATTTGATTAGTTCACTCGTGGCCCAAGGTGTTATCTCATTAGCTAATCAAGCCCCTGCGGAGGTAACTAAATTGGCTAATCAAACCCCTGCGGAGGTAACTAAATCGGCTAATCAAGCCCCTGCGGAGGTAACTAAATCAATCCTTAGTTCAATTTTTATATCACATTTTCCTTCCATTATTGTTTAATTGCGTACCAATTTTGTTATTATATTATGTTTGTAGGATTTTATTGGCCTTGAGTTTGATCCAAATATTCTCAAGGTTCGTCATAAATCTGTAATCCGTGGCTTATATGGTGATTTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCAAAGATGAGCACAGCAGTCACATGGATTGGCATGTAACTAAGAATCGTATGTCTAAAAACAATAAGCAGAAACCCTCTCGCAAGTGGTTTGTGAGTGAGACGATGTGGCTTAAAGGTGCCGAGGCATTGGGAGTCAAGTCAGCTCCAGGTTTTTTGCCAACCGAGACCACTGAAGAAAAGAAAGAAGACGAAGAGTTGGCAGTTCCTGCCGACGAGGATCAAAATACATGTGCATTATGTGGAGAACCTTTTGACATGTTTTACAGTGATGAAACAGAGGATTGGATGTGTAGAGAAGCTGTATACCTCAATGCACCTAATGGAATAACAACAGGCATGGACAGGTCGCAGTTAGGCTCCATTATTCATGCTAAATGCAGATCTTAA
Protein sequence

>MS.gene030994.t1

MLARRETPTNSSSVFSHFPKKRCFDEFSYRSNGQPRQNPRALIDAYGSAKRQETSWKNTEEEEFNWEDMIPTPATGKPATIAANATSLASRVFPGLNSNTEYHPPVSPATFETRPSVNVHAPHPPIYPSKNPVRNPFESINANTTTVSHGLINRPIPVHEHGVENNGISKRNLHQLPNSPTSGQTPPFQFFPSQNPAASQFTLPRHAPLPNARPVMPLPMPDQRIGNNSFRPLPPAGHALPQILPHPNPGPNVSSQQPTVGYSNLISSLVAQGVISLANQAPAEVTKLANQTPAEVTKSANQAPAEDFIGLEFDPNILKVRHKSVIRGLYGDFPRQCTTCGLRFKSKDEHSSHMDWHVTKNRMSKNNKQKPSRKWFVSETMWLKGAEALGVKSAPGFLPTETTEEKKEDEELAVPADEDQNTCALCGEPFDMFYSDETEDWMCREAVYLNAPNGITTGMDRSQLGSIIHAKCRS