AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031003

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031003.t1 MTR_6g011610 98.201 278 4 1 1 278 1 277 0.0 563
MS.gene031003.t1 MTR_6g011610 91.367 278 4 2 1 278 1 258 0.0 513
MS.gene031003.t1 MTR_7g010020 59.932 292 75 11 1 270 1 272 7.77e-105 306
MS.gene031003.t1 MTR_8g468210 50.333 300 101 9 1 273 1 279 4.27e-79 241
MS.gene031003.t1 MTR_5g039000 52.941 255 79 6 48 273 38 280 1.62e-70 219
MS.gene031003.t1 MTR_5g038280 44.628 242 93 10 41 260 39 261 5.76e-40 141
MS.gene031003.t1 MTR_3g080100 46.231 199 91 5 82 266 3 199 7.53e-39 135
MS.gene031003.t1 MTR_3g080100 46.231 199 91 5 82 266 42 238 1.67e-38 135
MS.gene031003.t1 MTR_8g089895 60.748 107 41 1 86 191 43 149 5.57e-37 133
MS.gene031003.t1 MTR_6g007647 64.000 100 36 0 92 191 29 128 9.45e-37 131
MS.gene031003.t1 MTR_6g007647 64.000 100 36 0 92 191 63 162 2.21e-36 131
MS.gene031003.t1 MTR_3g086790 54.032 124 48 1 77 191 32 155 8.65e-36 130
MS.gene031003.t1 MTR_8g469430 68.750 96 30 0 96 191 89 184 1.20e-35 129
MS.gene031003.t1 MTR_4g107650 50.376 133 59 1 80 212 79 204 1.95e-34 127
MS.gene031003.t1 MTR_7g103340 55.435 92 41 0 95 186 62 153 4.86e-28 108
MS.gene031003.t1 MTR_3g092150 56.044 91 40 0 98 188 40 130 9.51e-28 107
MS.gene031003.t1 MTR_1g061660 57.609 92 39 0 95 186 58 149 3.31e-27 105
MS.gene031003.t1 MTR_8g026960 53.488 86 40 0 103 188 41 126 2.16e-25 101
MS.gene031003.t1 MTR_4g100550 46.154 104 55 1 80 183 105 207 3.81e-20 87.8
MS.gene031003.t1 MTR_5g019680 51.579 95 46 0 96 190 53 147 1.44e-19 84.7
MS.gene031003.t1 MTR_5g019650 51.064 94 46 0 96 189 53 146 2.89e-19 84.3
MS.gene031003.t1 MTR_2g061030 42.276 123 48 2 83 189 171 286 1.20e-17 82.0
MS.gene031003.t1 MTR_5g014890 46.154 104 49 1 86 189 113 209 2.11e-17 80.1
MS.gene031003.t1 MTR_7g093430 39.726 146 77 3 44 189 112 246 2.39e-17 80.5
MS.gene031003.t1 MTR_5g013010 46.000 100 53 1 84 183 125 223 2.81e-17 80.1
MS.gene031003.t1 MTR_1g017090 50.000 94 40 1 96 189 130 216 1.02e-16 78.6
MS.gene031003.t1 MTR_4g126900 47.253 91 41 1 99 189 91 174 1.36e-16 77.0
MS.gene031003.t1 MTR_4g097600 45.192 104 49 2 86 189 118 213 1.45e-16 77.8
MS.gene031003.t1 MTR_1g054285 37.671 146 85 2 75 220 139 278 1.60e-16 78.2
MS.gene031003.t1 MTR_8g006705 48.864 88 45 0 96 183 146 233 1.69e-16 78.2
MS.gene031003.t1 MTR_4g084750 50.000 88 44 0 96 183 65 152 8.03e-16 74.3
MS.gene031003.t1 MTR_3g103590 36.170 141 68 3 96 221 145 278 8.39e-14 70.5
MS.gene031003.t1 MTR_5g013010 53.125 64 29 1 84 147 125 187 3.97e-12 64.3
MS.gene031003.t1 MTR_2g038625 43.182 88 50 0 96 183 82 169 2.67e-11 62.0
MS.gene031003.t1 MTR_2g038580 43.182 88 50 0 96 183 82 169 2.67e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031003.t1 AT5G15150 53.559 295 99 13 1 271 22 302 1.35e-83 253
MS.gene031003.t1 AT3G01220 49.477 287 102 11 1 271 16 275 3.07e-80 244
MS.gene031003.t1 AT1G69780 46.405 306 114 9 1 275 7 293 6.10e-68 213
MS.gene031003.t1 AT1G26960 49.765 213 88 5 73 275 51 254 2.77e-58 187
MS.gene031003.t1 AT5G65310 52.448 143 57 2 80 211 52 194 3.51e-39 139
MS.gene031003.t1 AT5G65310 52.448 143 57 2 80 211 34 176 3.72e-39 139
MS.gene031003.t1 AT2G22430 64.078 103 37 0 89 191 55 157 1.48e-38 137
MS.gene031003.t1 AT4G40060 63.636 99 36 0 93 191 56 154 8.04e-38 135
MS.gene031003.t1 AT3G01470 62.000 100 38 0 92 191 64 163 2.60e-37 133
MS.gene031003.t1 AT2G46680 55.319 94 42 0 97 190 33 126 5.91e-29 111
MS.gene031003.t1 AT3G61890 55.556 90 40 0 99 188 33 122 4.04e-27 105
MS.gene031003.t1 AT2G46680 54.545 88 40 0 97 184 33 120 1.71e-26 104
MS.gene031003.t1 AT1G27045 46.400 125 63 1 96 216 68 192 6.71e-26 102
MS.gene031003.t1 AT1G27045 46.400 125 63 1 96 216 17 141 1.22e-25 100
MS.gene031003.t1 AT1G27045 46.400 125 63 1 96 216 25 149 1.29e-25 100
MS.gene031003.t1 AT1G27045 46.400 125 63 1 96 216 25 149 1.29e-25 100
MS.gene031003.t1 AT1G27045 52.632 95 45 0 96 190 68 162 1.06e-24 99.8
MS.gene031003.t1 AT5G03790 46.847 111 56 2 96 204 77 186 8.04e-24 97.1
MS.gene031003.t1 AT2G18550 42.657 143 65 3 96 221 61 203 3.62e-22 92.0
MS.gene031003.t1 AT2G36610 44.348 115 53 3 95 198 70 184 4.05e-22 91.3
MS.gene031003.t1 AT5G03790 49.462 93 40 1 96 188 77 162 4.68e-22 91.3
MS.gene031003.t1 AT4G36740 52.222 90 43 0 96 185 56 145 7.46e-21 88.6
MS.gene031003.t1 AT4G36740 52.222 90 43 0 96 185 55 144 8.61e-21 88.6
MS.gene031003.t1 AT5G66700 47.573 103 52 1 85 185 58 160 6.59e-20 86.3
MS.gene031003.t1 AT5G53980 46.000 100 54 0 87 186 2 101 7.82e-20 84.3
MS.gene031003.t1 AT2G01430 45.045 111 53 2 79 189 123 225 1.38e-18 83.6
MS.gene031003.t1 AT4G37790 47.115 104 46 2 86 189 118 212 8.31e-18 81.6
MS.gene031003.t1 AT5G47370 41.322 121 56 2 80 189 103 219 4.12e-17 79.7
MS.gene031003.t1 AT2G22800 47.115 104 46 2 86 189 105 199 4.12e-17 79.7
MS.gene031003.t1 AT5G06710 36.257 171 99 3 69 233 161 327 5.22e-17 80.1
MS.gene031003.t1 AT4G17460 46.667 105 51 2 86 189 124 224 6.68e-17 79.0
MS.gene031003.t1 AT3G60390 41.322 121 69 2 63 183 131 249 7.64e-17 79.3
MS.gene031003.t1 AT2G44910 46.591 88 47 0 96 183 163 250 2.32e-15 75.1
MS.gene031003.t1 AT4G16780 43.878 98 53 1 86 183 121 216 5.65e-15 73.6
MS.gene031003.t1 AT1G70920 48.864 88 45 0 96 183 69 156 3.14e-14 70.5
MS.gene031003.t1 AT1G70920 48.864 88 45 0 96 183 39 126 3.85e-14 69.3
MS.gene031003.t1 AT2G01430 48.571 70 35 1 79 148 123 191 1.91e-12 65.5
MS.gene031003.t1 AT5G06710 44.444 81 43 1 69 147 161 241 8.71e-11 61.6

Find 44 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACCTTGCTCTTCTATTT+TGG 0.086155 6.2:+5876415 None:intergenic
TTGATGAGCAGCAGAGTTTA+TGG 0.202182 6.2:-5874559 MS.gene031003:CDS
ATGCAATTGGCTAAAGCTTT+GGG 0.280624 6.2:-5876468 MS.gene031003:CDS
CTTAAGTGAATTTGGTGTTC+TGG 0.287773 6.2:+5874667 None:intergenic
AAAAGGGACTGCTTTGAAAA+TGG 0.299378 6.2:-5874770 MS.gene031003:CDS
CCACCTCATCAACACTTTCA+AGG 0.311971 6.2:-5877048 MS.gene031003:intron
CTTGTAGGCTTAAGTGAATT+TGG 0.316425 6.2:+5874659 None:intergenic
AGCAGCAGAGTTTATGGCCT+TGG 0.338430 6.2:-5874553 MS.gene031003:CDS
GAAGCAATTTGATTCTCTTA+AGG 0.348897 6.2:-5876355 MS.gene031003:CDS
TCATCGAGTCTTAACGGAAT+TGG 0.349906 6.2:+5874513 None:intergenic
AATGCAATTGGCTAAAGCTT+TGG 0.380110 6.2:-5876469 MS.gene031003:CDS
CTGATCTTGAAGAGCATTGA+AGG 0.381692 6.2:+5874624 None:intergenic
AACCTAGACAAGTAGCTATA+TGG 0.403297 6.2:-5876440 MS.gene031003:CDS
AGGAGCTGTGTCATGCTTGT+AGG 0.404646 6.2:+5874644 None:intergenic
AGCTACAAACTCTAAAGAAA+AGG 0.429689 6.2:-5874787 MS.gene031003:CDS
TGAAGAAGGGTACTCACAAA+TGG 0.439119 6.2:-5876580 MS.gene031003:CDS
GGCTGATAATGACACACTTA+AGG 0.472252 6.2:-5876334 MS.gene031003:CDS
TGTTGATGAGGTGGAAAGGA+AGG 0.483232 6.2:+5877057 None:intergenic
TAACAGCTCAGATATGAATC+TGG 0.487547 6.2:-5874696 MS.gene031003:CDS
GCTACAAACTCTAAAGAAAA+GGG 0.493192 6.2:-5874786 MS.gene031003:CDS
GATCAATTATCAGATGAAGA+AGG 0.500107 6.2:-5876594 MS.gene031003:CDS
ATGAGGTGGAAAGGAAGGAT+AGG 0.501061 6.2:+5877062 None:intergenic
GTGAATTTGGTGTTCTGGAA+AGG 0.501153 6.2:+5874672 None:intergenic
TCAGATCATCTTCAAGATGA+AGG 0.524475 6.2:-5874605 MS.gene031003:CDS
AATGAAGGTTCTTGGAGCAA+TGG 0.528783 6.2:-5874725 MS.gene031003:CDS
CTCTATGCCTGAAAATGACA+TGG 0.537665 6.2:+5876668 None:intergenic
GAAGAAGGGTACTCACAAAT+GGG 0.542302 6.2:-5876579 MS.gene031003:CDS
ATCAATTATCAGATGAAGAA+GGG 0.550627 6.2:-5876593 MS.gene031003:CDS
TGCAATTGGCTAAAGCTTTG+GGG 0.570828 6.2:-5876467 MS.gene031003:CDS
AACCATATAGCTACTTGTCT+AGG 0.577432 6.2:+5876438 None:intergenic
ATTGTAGGTAGTGGAAGTAA+TGG 0.594104 6.2:-5876717 MS.gene031003:intron
AAATGGGTGAAAAGAAGAAG+AGG 0.594234 6.2:-5876563 MS.gene031003:CDS
AAGATGAAAGTGTGAGAAGG+TGG 0.602335 6.2:+5877144 None:intergenic
CCTTGAAAGTGTTGATGAGG+TGG 0.603326 6.2:+5877048 None:intergenic
AAACAACAAATTACATGCAG+AGG 0.604512 6.2:-5876307 MS.gene031003:intron
GTAGGTAGTGGAAGTAATGG+TGG 0.615975 6.2:-5876714 MS.gene031003:intron
GTGAGAAGGTGGAAAAGCCA+TGG 0.640795 6.2:+5877155 None:intergenic
GGTTCCAAAATAGAAGAGCA+AGG 0.645595 6.2:-5876419 MS.gene031003:CDS
AAAGTGTTGATGAGGTGGAA+AGG 0.650161 6.2:+5877053 None:intergenic
TGAAAGATGAAAGTGTGAGA+AGG 0.650915 6.2:+5877141 None:intergenic
AAGTGTGATGAATTAGTGCA+TGG 0.667963 6.2:-5876624 MS.gene031003:CDS
TGACCTTGAAAGTGTTGATG+AGG 0.676035 6.2:+5877045 None:intergenic
TGTTGCTGATGATCAGTCCA+AGG 0.684041 6.2:+5874536 None:intergenic
TCCAAAATAGAAGAGCAAGG+TGG 0.719995 6.2:-5876416 MS.gene031003:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAAAATAAAATAAAAGTT+TGG + chr6.2:5876068-5876087 None:intergenic 10.0%
!!! CTTTTAAAAAAGTTTATTTT+TGG + chr6.2:5874877-5874896 None:intergenic 10.0%
!!! GATTAATAAATTGTATTTTT+TGG - chr6.2:5875798-5875817 MS.gene031003:intron 10.0%
!! AAAAAATGATTGTATGAATA+TGG + chr6.2:5876813-5876832 None:intergenic 15.0%
!! AAGAATAAAAAATTGGATAT+TGG + chr6.2:5875772-5875791 None:intergenic 15.0%
!! TAATTTGAATTAGTTATAAG+AGG - chr6.2:5876127-5876146 MS.gene031003:intron 15.0%
!! TCTTAAAATCATTTATATTG+CGG + chr6.2:5876697-5876716 None:intergenic 15.0%
!!! ATTAGTCATTTTCAATAAAA+TGG - chr6.2:5875656-5875675 MS.gene031003:intron 15.0%
!!! ATTGTATTTTTTGGAAATAA+AGG - chr6.2:5875807-5875826 MS.gene031003:intron 15.0%
!! AAAGAAGACTTTGATTAATT+TGG - chr6.2:5875604-5875623 MS.gene031003:intron 20.0%
!! AGAAAAATCTTTATAATCAG+TGG - chr6.2:5874895-5874914 MS.gene031003:intron 20.0%
!! CATCTTCAAGAATAAAAAAT+TGG + chr6.2:5875779-5875798 None:intergenic 20.0%
!! GTTAATTACACATTCATTAT+TGG + chr6.2:5876013-5876032 None:intergenic 20.0%
!!! AAATATTGATGTTTTTGCAA+CGG + chr6.2:5874770-5874789 None:intergenic 20.0%
!!! AATCAAGAAAGAAATTTTAG+AGG + chr6.2:5875553-5875572 None:intergenic 20.0%
!!! TGTATTTTCCTGTAATATAA+AGG - chr6.2:5876750-5876769 MS.gene031003:intron 20.0%
!!! TGTTTTTTGTTTGTTATTGT+AGG - chr6.2:5874944-5874963 MS.gene031003:intron 20.0%
! AAAAAGAAAATGAAGGTTCT+TGG - chr6.2:5876943-5876962 MS.gene031003:intron 25.0%
! AAATCAAAGTCTATATCAAG+GGG + chr6.2:5875894-5875913 None:intergenic 25.0%
! ACACTCAAAAAAGAAAATGA+AGG - chr6.2:5876936-5876955 MS.gene031003:intron 25.0%
! ATCAATTATCAGATGAAGAA+GGG - chr6.2:5875083-5875102 MS.gene031003:intron 25.0%
! ATTGAGCTTTCTTAGTAAAT+AGG + chr6.2:5876173-5876192 None:intergenic 25.0%
! ATTGTTAGTTGATCATTCAT+AGG - chr6.2:5876275-5876294 MS.gene031003:intron 25.0%
! CAAATCAAAGTCTATATCAA+GGG + chr6.2:5875895-5875914 None:intergenic 25.0%
! GGAAAATATGAAAAACTATG+AGG + chr6.2:5875872-5875891 None:intergenic 25.0%
! TAAATGATTAAAACCTTCAG+TGG + chr6.2:5875965-5875984 None:intergenic 25.0%
! TCAAATCAAAGTCTATATCA+AGG + chr6.2:5875896-5875915 None:intergenic 25.0%
! TGGTGGTAAATTAATTAACT+GGG - chr6.2:5875631-5875650 MS.gene031003:intron 25.0%
! TTTATATTGCGGTAAAATGT+TGG - chr6.2:5876533-5876552 MS.gene031003:CDS 25.0%
!! ACTTTGATTAATTTGGATCT+TGG - chr6.2:5875611-5875630 MS.gene031003:intron 25.0%
!! GAGACCTCTAAAAAAATTTA+CGG - chr6.2:5876594-5876613 MS.gene031003:CDS 25.0%
!! GCAATCACAATTTAAAATCA+TGG + chr6.2:5876485-5876504 None:intergenic 25.0%
!! TATTTCGAGCTTTTATATTG+CGG - chr6.2:5876522-5876541 MS.gene031003:CDS 25.0%
!! TTGGTGGTAAATTAATTAAC+TGG - chr6.2:5875630-5875649 MS.gene031003:intron 25.0%
AAAAAAAAGTTAGACCGATG+TGG - chr6.2:5874724-5874743 MS.gene031003:CDS 30.0%
AAAAAGTCATAAAGACCATG+TGG + chr6.2:5876217-5876236 None:intergenic 30.0%
AAAAGTCATAAAGACCATGT+GGG + chr6.2:5876216-5876235 None:intergenic 30.0%
AAAAGTTTGCAACGTAACTT+CGG + chr6.2:5874698-5874717 None:intergenic 30.0%
AAACAACAAATTACATGCAG+AGG - chr6.2:5875369-5875388 MS.gene031003:intron 30.0%
AATCAAAGTCTATATCAAGG+GGG + chr6.2:5875893-5875912 None:intergenic 30.0%
ATGAATATGGTTTCAAATCG+AGG + chr6.2:5876800-5876819 None:intergenic 30.0%
ATGTTGCTATGAAAAAGACA+AGG - chr6.2:5876385-5876404 MS.gene031003:CDS 30.0%
ATTTGATGTGTGTTTGTGAA+TGG - chr6.2:5875910-5875929 MS.gene031003:intron 30.0%
CACTATTAAATTTGCAGTTC+TGG + chr6.2:5876321-5876340 None:intergenic 30.0%
CATGAAGACCTTACTATATA+TGG - chr6.2:5876859-5876878 MS.gene031003:intron 30.0%
GAAGCAATTTGATTCTCTTA+AGG - chr6.2:5875321-5875340 MS.gene031003:intron 30.0%
GAATGATCAACTAACAATCA+AGG + chr6.2:5876273-5876292 None:intergenic 30.0%
GATCAATTATCAGATGAAGA+AGG - chr6.2:5875082-5875101 MS.gene031003:intron 30.0%
GTTGCAAACCTTTATATTAC+AGG + chr6.2:5876761-5876780 None:intergenic 30.0%
TGCAAACACCATATATAGTA+AGG + chr6.2:5876870-5876889 None:intergenic 30.0%
! AGAAGACTTTTCTTTCACTT+TGG - chr6.2:5875831-5875850 MS.gene031003:intron 30.0%
! AGCTACAAACTCTAAAGAAA+AGG - chr6.2:5876889-5876908 MS.gene031003:intron 30.0%
! GCTACAAACTCTAAAGAAAA+GGG - chr6.2:5876890-5876909 MS.gene031003:intron 30.0%
! TTGATTAATTTGGATCTTGG+TGG - chr6.2:5875614-5875633 MS.gene031003:intron 30.0%
!! AATCACAATTTTGACCACAT+CGG + chr6.2:5874741-5874760 None:intergenic 30.0%
!! TTGTTTGTTATTGTAGGTAG+TGG - chr6.2:5874950-5874969 MS.gene031003:intron 30.0%
!!! TGATTTTAAGATGTTCGCAA+CGG - chr6.2:5876706-5876725 MS.gene031003:CDS 30.0%
AAATGGGTGAAAAGAAGAAG+AGG - chr6.2:5875113-5875132 MS.gene031003:intron 35.0%
AACCATATAGCTACTTGTCT+AGG + chr6.2:5875241-5875260 None:intergenic 35.0%
AACCTAGACAAGTAGCTATA+TGG - chr6.2:5875236-5875255 MS.gene031003:intron 35.0%
AAGTGTGATGAATTAGTGCA+TGG - chr6.2:5875052-5875071 MS.gene031003:intron 35.0%
AATGCAATTGGCTAAAGCTT+TGG - chr6.2:5875207-5875226 MS.gene031003:intron 35.0%
ACCTGAGAGAAAAATGCAAT+TGG - chr6.2:5875195-5875214 MS.gene031003:intron 35.0%
ATGCAATTGGCTAAAGCTTT+GGG - chr6.2:5875208-5875227 MS.gene031003:intron 35.0%
CACATTCATTATTGGAGACA+AGG + chr6.2:5876005-5876024 None:intergenic 35.0%
CTTGTAGGCTTAAGTGAATT+TGG + chr6.2:5877020-5877039 None:intergenic 35.0%
GATTTAGTTATGATCCCACA+TGG - chr6.2:5876199-5876218 MS.gene031003:intron 35.0%
TAACAGCTCAGATATGAATC+TGG - chr6.2:5876980-5876999 MS.gene031003:intron 35.0%
TCAAATCGAGGTCAAAATTG+TGG + chr6.2:5876788-5876807 None:intergenic 35.0%
TCAGATCATCTTCAAGATGA+AGG - chr6.2:5877071-5877090 MS.gene031003:CDS 35.0%
TTAGTACATAGTTGTCCACA+TGG - chr6.2:5876423-5876442 MS.gene031003:CDS 35.0%
! TGAAAGATGAAAGTGTGAGA+AGG + chr6.2:5874538-5874557 None:intergenic 35.0%
!! AAAAGGGACTGCTTTGAAAA+TGG - chr6.2:5876906-5876925 MS.gene031003:intron 35.0%
!! ATTGTAGGTAGTGGAAGTAA+TGG - chr6.2:5874959-5874978 MS.gene031003:intron 35.0%
!! CTTAAGTGAATTTGGTGTTC+TGG + chr6.2:5877012-5877031 None:intergenic 35.0%
!!! AAGAGATCCATGTCATTTTC+AGG - chr6.2:5875001-5875020 MS.gene031003:intron 35.0%
!!! CTTGAGAAGAGTTTTGAGAT+TGG - chr6.2:5875160-5875179 MS.gene031003:intron 35.0%
!!! GGTGCCGTAAATTTTTTTAG+AGG + chr6.2:5876601-5876620 None:intergenic 35.0%
AATGAAGGTTCTTGGAGCAA+TGG - chr6.2:5876951-5876970 MS.gene031003:intron 40.0%
AGAGAAGAGAGAAGATGTTG+TGG + chr6.2:5874834-5874853 None:intergenic 40.0%
CACTTTCATATGCTTCCATG+TGG + chr6.2:5876441-5876460 None:intergenic 40.0%
CTCTATGCCTGAAAATGACA+TGG + chr6.2:5875011-5875030 None:intergenic 40.0%
GGTTCCAAAATAGAAGAGCA+AGG - chr6.2:5875257-5875276 MS.gene031003:intron 40.0%
TCCAAAATAGAAGAGCAAGG+TGG - chr6.2:5875260-5875279 MS.gene031003:intron 40.0%
TGATTAAAACCTTCAGTGGC+AGG + chr6.2:5875961-5875980 None:intergenic 40.0%
TGCAATTGGCTAAAGCTTTG+GGG - chr6.2:5875209-5875228 MS.gene031003:intron 40.0%
TTGATGAGCAGCAGAGTTTA+TGG - chr6.2:5877117-5877136 MS.gene031003:CDS 40.0%
! AAGATGAAAGTGTGAGAAGG+TGG + chr6.2:5874535-5874554 None:intergenic 40.0%
! CACATGGAAGCATATGAAAG+TGG - chr6.2:5876439-5876458 MS.gene031003:CDS 40.0%
! GCCAATTGCATTTTTCTCTC+AGG + chr6.2:5875199-5875218 None:intergenic 40.0%
! GGCTGATAATGACACACTTA+AGG - chr6.2:5875342-5875361 MS.gene031003:intron 40.0%
! TCCACCTTGCTCTTCTATTT+TGG + chr6.2:5875264-5875283 None:intergenic 40.0%
!! AAAGTGTTGATGAGGTGGAA+AGG + chr6.2:5874626-5874645 None:intergenic 40.0%
!! CTGATCTTGAAGAGCATTGA+AGG + chr6.2:5877055-5877074 None:intergenic 40.0%
!! GAAGAAGGGTACTCACAAAT+GGG - chr6.2:5875097-5875116 MS.gene031003:intron 40.0%
!! GTGAATTTGGTGTTCTGGAA+AGG + chr6.2:5877007-5877026 None:intergenic 40.0%
!! TGAAGAAGGGTACTCACAAA+TGG - chr6.2:5875096-5875115 MS.gene031003:intron 40.0%
!! TGACCTTGAAAGTGTTGATG+AGG + chr6.2:5874634-5874653 None:intergenic 40.0%
ATGAGGTGGAAAGGAAGGAT+AGG + chr6.2:5874617-5874636 None:intergenic 45.0%
CCACCTCATCAACACTTTCA+AGG - chr6.2:5874628-5874647 MS.gene031003:CDS 45.0%
GAGAGAAGATGTTGTGGTCA+TGG + chr6.2:5874828-5874847 None:intergenic 45.0%
GTTGTCCATAACCGTAGTTG+CGG + chr6.2:5876623-5876642 None:intergenic 45.0%
TGTTGCTGATGATCAGTCCA+AGG + chr6.2:5877143-5877162 None:intergenic 45.0%
TTGTCCATAACCGTAGTTGC+GGG + chr6.2:5876622-5876641 None:intergenic 45.0%
! ACAAGTTTTCCTGCCACTGA+AGG - chr6.2:5875949-5875968 MS.gene031003:intron 45.0%
! TGTTGATGAGGTGGAAAGGA+AGG + chr6.2:5874622-5874641 None:intergenic 45.0%
!! AGTTCTGGATTCTGACACAC+TGG + chr6.2:5876306-5876325 None:intergenic 45.0%
!! CCTTGAAAGTGTTGATGAGG+TGG + chr6.2:5874631-5874650 None:intergenic 45.0%
!! GTAGGTAGTGGAAGTAATGG+TGG - chr6.2:5874962-5874981 MS.gene031003:intron 45.0%
AGCAGCAGAGTTTATGGCCT+TGG - chr6.2:5877123-5877142 MS.gene031003:CDS 50.0%
AGGAGCTGTGTCATGCTTGT+AGG + chr6.2:5877035-5877054 None:intergenic 50.0%
ATTTACGGCACCCGCAACTA+CGG - chr6.2:5876609-5876628 MS.gene031003:CDS 50.0%
CTCTCGTAGCATCGCAATTG+CGG + chr6.2:5876577-5876596 None:intergenic 50.0%
GGCACCCGCAACTACGGTTA+TGG - chr6.2:5876615-5876634 MS.gene031003:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 5874523 5877175 5874523 ID=MS.gene031003
chr6.2 mRNA 5874523 5877175 5874523 ID=MS.gene031003.t1;Parent=MS.gene031003
chr6.2 exon 5877049 5877175 5877049 ID=MS.gene031003.t1.exon1;Parent=MS.gene031003.t1
chr6.2 CDS 5877049 5877175 5877049 ID=cds.MS.gene031003.t1;Parent=MS.gene031003.t1
chr6.2 exon 5876308 5876732 5876308 ID=MS.gene031003.t1.exon2;Parent=MS.gene031003.t1
chr6.2 CDS 5876308 5876732 5876308 ID=cds.MS.gene031003.t1;Parent=MS.gene031003.t1
chr6.2 exon 5874523 5874807 5874523 ID=MS.gene031003.t1.exon3;Parent=MS.gene031003.t1
chr6.2 CDS 5874523 5874807 5874523 ID=cds.MS.gene031003.t1;Parent=MS.gene031003.t1
Gene Sequence

>MS.gene031003

ATGGCTTTTCCACCTTCTCACACTTTCATCTTTCAAACTCATGAAGATCATCATCATGAAAACATACTTTCATCTTCAACTTCTCTTAACTCCTATCCTTCCTTTCCACCTCATCAACACTTTCAAGGTCACACTCAAACTTTTTCTTGTGTGTGTTAAATTGCATCTGTAGCCGAAGTTACGTTGCAAACTTTTATATTGAAAAAAAAGTTAGACCGATGTGGTCAAAATTGTGATTGTAATACCGTTGCAAAAACATCAATATTTGTCGTTATATTATCGTTGCAGATTGCAATTTAAAACCATGACCACAACATCTTCTCTCTTCTCTATTTCTAATGAAAAAATGTTCCAAAAATAAACTTTTTTAAAAGAAAAATCTTTATAATCAGTGGTTATTTTTCATTAAAATTTTTACATATGTTTTTTGTTTGTTATTGTAGGTAGTGGAAGTAATGGTGGTGCATCATTCATGATGAAGAGATCCATGTCATTTTCAGGCATAGAGAGCAATCATATAAACAACAATAAGTGTGATGAATTAGTGCATGGAGATGAAGATCAATTATCAGATGAAGAAGGGTACTCACAAATGGGTGAAAAGAAGAAGAGGTTGAGTTTAGAACAAGTGAAAGCACTTGAGAAGAGTTTTGAGATTGGTAACAAGCTTGAACCTGAGAGAAAAATGCAATTGGCTAAAGCTTTGGGGTTACAACCTAGACAAGTAGCTATATGGTTCCAAAATAGAAGAGCAAGGTGGAAAACTAAGCAACTTGAGAAAGAATATGAAGTTCTTAAGAAGCAATTTGATTCTCTTAAGGCTGATAATGACACACTTAAGGCTCAAAACAACAAATTACATGCAGAGGTAATTACTAATTAATACTAATGATAGTACTAATCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGTTAGTGTAATTAAATCTTTAAAATTTCAATACTCTACCTCTAAAATTTCTTTCTTGATTAATTATACTATTGAGTGATTATTTTTGAACAAAAGAAGACTTTGATTAATTTGGATCTTGGTGGTAAATTAATTAACTGGGTCATTAGTCATTTTCAATAAAATGGAGATGTCTTAATCTTGATTCAAAATATAATCTTAAAATAGTTCAAATTTTTTCAATGTTCATGAACAAAAATAGAGTGTGTGACTTGACTCCAATATCCAATTTTTTATTCTTGAAGATGATTAATAAATTGTATTTTTTGGAAATAAAGGAAGAAGACTTTTCTTTCACTTTGGTTGTTAATTTTTTTTCCTCATAGTTTTTCATATTTTCCCCCTTGATATAGACTTTGATTTGATGTGTGTTTGTGAATGGATTACATCAATGCAGAACAAGTTTTCCTGCCACTGAAGGTTTTAATCATTTAGTCTTTTCAATACTTATCCTTGTCTCCAATAATGAATGTGTAATTAACATATATATTTTTATATTTGAAGAAAAAAAATACCAAACTTTTATTTTATTTTGATTTTTTTTAATGCAAAATTGTTTATTTATTTTCACTTCTTTAATTTGAATTAGTTATAAGAGGAATTTTTTTTTTTCTTCTAGCCTATTTACTAAGAAAGCTCAATTTAATTGATTTAGTTATGATCCCACATGGTCTTTATGACTTTTTAAAGTAATTGATTTTGTTATTAACTTTCTGCTACCTTGATTGTTAGTTGATCATTCATAGGACTAGCCAGTGTGTCAGAATCCAGAACTGCAAATTTAATAGTGATATGTTTGTTTTTCTATTCAATACTGTTTTATATAACTATTTCATGTTGCTATGAAAAAGACAAGGTAGCTTTTGATCTGATTAGTACATAGTTGTCCACATGGAAGCATATGAAAGTGGAATCAAAAGCTTTATTCATACCATGATTTTAAATTGTGATTGCAGTCGCAGTTTTAATTATATTTCGAGCTTTTATATTGCGGTAAAATGTTGGCAAATGCGAGTAATGTAGCCGCAATTGCGATGCTACGAGAGACCTCTAAAAAAATTTACGGCACCCGCAACTACGGTTATGGACAACAATTACAGTTGTGATGCTATTGCAGATATTTCTAAAATCTTTATATTGCGTCCGCAATATAAATGATTTTAAGATGTTCGCAACGGTATCTCAACTGCAATTGCGACTGTATTTTCCTGTAATATAAAGGTTTGCAACGTATCCACAATTTTGACCTCGATTTGAAACCATATTCATACAATCATTTTTTTTTTTTTATAATGTGATACATACATTCATGAAGACCTTACTATATATGGTGTTTGCAGCTACAAACTCTAAAGAAAAGGGACTGCTTTGAAAATGGAACAATTACACTCAAAAAAGAAAATGAAGGTTCTTGGAGCAATGGAAGTGATAACAGCTCAGATATGAATCTGGACCTTTCCAGAACACCAAATTCACTTAAGCCTACAAGCATGACACAGCTCCTTCAATGCTCTTCAAGATCAGATCATCTTCAAGATGAAGGCTTTTGCAACATGTTTAACAACATTGATGAGCAGCAGAGTTTATGGCCTTGGACTGATCATCAGCAACACCAATTCCGTTAA
Protein sequence

>MS.gene031003.t1

MAFPPSHTFIFQTHEDHHHENILSSSTSLNSYPSFPPHQHFQGSGSNGGASFMMKRSMSFSGIESNHINNNKCDELVHGDEDQLSDEEGYSQMGEKKKRLSLEQVKALEKSFEIGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFDSLKADNDTLKAQNNKLHAELQTLKKRDCFENGTITLKKENEGSWSNGSDNSSDMNLDLSRTPNSLKPTSMTQLLQCSSRSDHLQDEGFCNMFNNIDEQQSLWPWTDHQQHQFR