AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03101

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03101.t1 MTR_2g017890 78.673 422 50 2 1 422 2 383 0.0 639
MS.gene03101.t1 MTR_8g087540 48.615 325 161 3 1 324 1 320 6.60e-100 303
MS.gene03101.t1 MTR_5g029680 45.405 185 97 2 13 193 31 215 1.39e-51 181
MS.gene03101.t1 MTR_2g043940 52.381 168 80 0 66 233 14 181 1.78e-51 177
MS.gene03101.t1 MTR_4g077970 40.741 189 101 2 12 193 10 194 2.30e-46 167
MS.gene03101.t1 MTR_7g095680 40.201 199 116 1 13 211 48 243 2.63e-44 158
MS.gene03101.t1 MTR_3g104550 38.350 206 114 3 13 211 45 244 2.15e-43 156
MS.gene03101.t1 MTR_2g100680 36.194 268 145 7 6 257 23 280 4.54e-43 157
MS.gene03101.t1 MTR_6g043060 61.111 108 42 0 4 111 12 119 1.25e-42 152
MS.gene03101.t1 MTR_2g100670 41.206 199 104 3 1 193 14 205 2.47e-42 151
MS.gene03101.t1 MTR_2g100670 41.414 198 103 3 1 192 122 312 1.47e-41 152
MS.gene03101.t1 MTR_1g102860 38.830 188 111 1 5 192 31 214 3.45e-41 149
MS.gene03101.t1 MTR_8g083100 40.000 210 101 6 15 213 23 218 5.82e-41 152
MS.gene03101.t1 MTR_1g061170 37.056 197 116 3 12 208 47 235 9.16e-41 150
MS.gene03101.t1 MTR_8g105780 44.624 186 99 2 12 193 20 205 1.18e-40 149
MS.gene03101.t1 MTR_5g017470 60.000 100 40 0 14 113 9 108 1.26e-39 144
MS.gene03101.t1 MTR_6g086805 39.779 181 102 2 12 192 9 182 1.75e-38 142
MS.gene03101.t1 MTR_1g071360 38.298 188 102 2 5 192 23 196 2.34e-38 142
MS.gene03101.t1 MTR_1g071360 38.298 188 102 2 5 192 20 193 5.40e-38 141
MS.gene03101.t1 MTR_5g010680 57.009 107 45 1 2 107 11 117 2.82e-37 139
MS.gene03101.t1 MTR_3g101870 61.000 100 38 1 8 106 17 116 1.10e-35 135
MS.gene03101.t1 MTR_1g100777 54.717 106 47 1 3 107 6 111 7.87e-35 131
MS.gene03101.t1 MTR_5g089170 57.000 100 42 1 8 106 18 117 4.32e-33 125
MS.gene03101.t1 MTR_7g091370 47.619 105 55 0 14 118 22 126 6.49e-32 121
MS.gene03101.t1 MTR_0020s0020 56.522 92 40 0 14 105 33 124 1.52e-31 123
MS.gene03101.t1 MTR_4g088900 38.037 163 85 3 14 164 33 191 1.15e-26 106
MS.gene03101.t1 MTR_4g045760 51.724 116 39 2 289 404 3 101 5.86e-26 101
MS.gene03101.t1 MTR_4g045757 64.789 71 25 0 1 71 1 71 1.94e-25 99.0
MS.gene03101.t1 MTR_5g047190 49.485 97 42 2 22 111 1 97 7.81e-25 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03101.t1 AT4G18880 44.272 323 165 7 2 315 3 319 5.40e-70 226
MS.gene03101.t1 AT5G45710 40.248 323 152 5 1 323 1 282 1.59e-62 205
MS.gene03101.t1 AT5G45710 40.248 323 152 5 1 323 1 282 1.59e-62 205
MS.gene03101.t1 AT4G17750 43.979 191 96 1 13 192 51 241 1.03e-49 176
MS.gene03101.t1 AT1G32330 42.408 191 104 2 8 192 31 221 8.73e-47 167
MS.gene03101.t1 AT1G32330 42.408 191 104 2 8 192 31 221 1.06e-46 167
MS.gene03101.t1 AT2G26150 39.130 207 115 3 13 211 43 246 4.38e-46 162
MS.gene03101.t1 AT2G26150 39.130 207 115 3 13 211 43 246 4.38e-46 162
MS.gene03101.t1 AT3G02990 39.234 209 119 3 12 212 21 229 9.31e-46 164
MS.gene03101.t1 AT4G13980 42.697 178 95 1 15 192 24 194 3.24e-44 160
MS.gene03101.t1 AT5G16820 40.323 186 109 1 10 193 23 208 3.39e-44 160
MS.gene03101.t1 AT5G16820 40.323 186 109 1 10 193 23 208 3.39e-44 160
MS.gene03101.t1 AT3G22830 38.916 203 117 3 13 211 60 259 1.09e-42 155
MS.gene03101.t1 AT5G03720 38.378 185 103 2 12 193 53 229 2.42e-42 154
MS.gene03101.t1 AT5G03720 38.378 185 103 2 12 193 53 229 2.42e-42 154
MS.gene03101.t1 AT5G62020 51.128 133 57 2 1 132 9 134 2.65e-39 143
MS.gene03101.t1 AT3G24520 38.674 181 85 2 12 192 15 169 3.25e-39 144
MS.gene03101.t1 AT5G43840 46.452 155 78 2 11 163 14 165 6.02e-39 142
MS.gene03101.t1 AT1G67970 39.698 199 115 4 12 208 17 212 9.57e-39 144
MS.gene03101.t1 AT3G51910 38.830 188 97 4 5 192 20 189 1.08e-37 138
MS.gene03101.t1 AT3G63350 39.247 186 92 3 14 192 28 199 1.29e-37 138
MS.gene03101.t1 AT1G46264 59.813 107 39 2 1 106 23 126 6.65e-37 138
MS.gene03101.t1 AT4G36990 57.576 99 42 0 14 112 14 112 1.39e-34 130
MS.gene03101.t1 AT2G41690 53.398 103 47 1 13 114 39 141 4.19e-34 127
MS.gene03101.t1 AT5G54070 37.017 181 98 3 12 190 69 235 8.79e-34 129
MS.gene03101.t1 AT4G11660 58.696 92 38 0 14 105 59 150 1.54e-33 129
MS.gene03101.t1 AT5G45710 32.301 226 113 4 98 323 1 186 5.48e-22 94.7
MS.gene03101.t1 AT5G45710 32.301 226 113 4 98 323 1 186 5.48e-22 94.7
MS.gene03101.t1 AT4G18870 48.864 88 45 0 14 101 146 233 7.47e-22 95.5
MS.gene03101.t1 AT4G18870 46.535 101 52 2 1 101 1 99 1.51e-21 94.7
MS.gene03101.t1 AT1G77570 37.778 90 53 2 15 101 27 116 3.03e-15 73.2
MS.gene03101.t1 AT2G26150 28.082 146 94 3 74 211 49 191 8.08e-14 72.0
MS.gene03101.t1 AT2G26150 28.082 146 94 3 74 211 49 191 8.08e-14 72.0

Find 78 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATTATAATAATGAATTT+TGG 0.100021 2.3:+68967049 MS.gene03101:CDS
GTTACGACGGGTTGTTCTTC+TGG 0.216236 2.3:-68967012 None:intergenic
CAACTGATGACATTGTTTCT+TGG 0.248061 2.3:+68965359 MS.gene03101:CDS
AGTTGCATACAAGATGTTAT+TGG 0.278275 2.3:-68966754 None:intergenic
AACTGATGACATTGTTTCTT+GGG 0.286701 2.3:+68965360 MS.gene03101:CDS
TCTCACTAAGACTTATGATA+TGG 0.289830 2.3:+68965324 MS.gene03101:CDS
TCTTCTGGTTCAACAAAATC+AGG 0.301153 2.3:-68966997 None:intergenic
TAAGGTAATTTAGACTCTTT+TGG 0.303752 2.3:-68967139 None:intergenic
TGAAACTTGAGAAGTTATTA+TGG 0.310950 2.3:-68965456 None:intergenic
ATGCTAGCTACATTACAAAA+AGG 0.320103 2.3:-68966529 None:intergenic
GGCTCAGTTGCAACCGGATT+AGG 0.358087 2.3:-68966919 None:intergenic
CGAGTCGAGTTGGCCAATAT+TGG 0.365906 2.3:+68967112 MS.gene03101:CDS
GGCTCAGTTGCATCATGATT+AGG 0.376887 2.3:-68966880 None:intergenic
TTATTATAATCAGTAGTAAC+CGG 0.377060 2.3:-68967039 None:intergenic
CGGATGTCTTTGAAAATAAG+AGG 0.384067 2.3:-68966692 None:intergenic
ACAGTACTCGAAGGGTCATT+TGG 0.400137 2.3:+68966375 MS.gene03101:CDS
GACTCAGTTGCAACTGGATC+AGG 0.430111 2.3:-68966841 None:intergenic
TGTAATCGTTGTTCCTAATC+CGG 0.434226 2.3:+68966906 MS.gene03101:CDS
ACCGCTGGCTCAGTTGCAAC+CGG 0.439728 2.3:-68966925 None:intergenic
GTTTCTTGAACTTCAGAGAA+AGG 0.439975 2.3:+68966321 MS.gene03101:CDS
GGGAATGATGGAAGAAGCTC+AGG 0.447000 2.3:+68965273 None:intergenic
CATGTCGACTTCTAGTGACT+TGG 0.447575 2.3:-68966794 None:intergenic
GAGAAAAGGAGGCACCTTAT+CGG 0.448416 2.3:-68965305 None:intergenic
ACATCCGACTCAGTTGCAAC+TGG 0.474094 2.3:-68966847 None:intergenic
GATGACTCAATGAATTATGT+AGG 0.484303 2.3:+68966727 MS.gene03101:CDS
CGAATCATCAATGACAAGTT+GGG 0.487340 2.3:+68966645 MS.gene03101:CDS
AAGAAACCTGGGAATGAGTT+CGG 0.488624 2.3:+68966451 MS.gene03101:CDS
ACAATACTTGCAGGACGAAT+CGG 0.489021 2.3:+68967074 MS.gene03101:CDS
CATGAGCATTCTGCGAAGAA+TGG 0.490641 2.3:-68966210 None:intergenic
GAGTCATCAAAATCTACATT+CGG 0.497020 2.3:-68966712 None:intergenic
TCATAAGTCTTAGTGAGAAA+AGG 0.497418 2.3:-68965319 None:intergenic
TGAACTTCAGAGAAAGGAAG+AGG 0.498686 2.3:+68966327 MS.gene03101:CDS
GGTCAAGTGCTGAAGAAACC+TGG 0.503718 2.3:+68966439 MS.gene03101:CDS
TCGAATCATCAATGACAAGT+TGG 0.505281 2.3:+68966644 MS.gene03101:CDS
TTATTATGGTTAAAGTATTG+AGG 0.507346 2.3:-68965442 None:intergenic
AGCATTCAACGTCTGTCGAT+CGG 0.518634 2.3:-68966263 None:intergenic
GAAACAATGTCATCAGTTGA+AGG 0.519956 2.3:-68965355 None:intergenic
TTAGGAACAACGATTACATT+CGG 0.521576 2.3:-68966901 None:intergenic
CAATATTGGCCAACTCGACT+CGG 0.523538 2.3:-68967111 None:intergenic
TCAGGGTAGTAGTTCCGATA+AGG 0.544906 2.3:+68965291 MS.gene03101:CDS
CATTCTTCGCAGAATGCTCA+TGG 0.549403 2.3:+68966211 MS.gene03101:CDS
CATATACCGAACTCATTCCC+AGG 0.550102 2.3:-68966457 None:intergenic
TCGCAGAATGCTCATGGCCA+AGG 0.553053 2.3:+68966217 MS.gene03101:CDS
CAAAGTGTGCTCTCTTATGT+TGG 0.554182 2.3:+68966418 MS.gene03101:CDS
ATGTCGACTTCTAGTGACTT+GGG 0.560272 2.3:-68966793 None:intergenic
TAAGACTTATGATATGGTTG+AGG 0.565627 2.3:+68965330 MS.gene03101:CDS
TGTCGATCGGATTCTGCTAG+TGG 0.566589 2.3:-68966250 None:intergenic
AGCTAGCATTGAAGATCATG+TGG 0.568546 2.3:+68966543 MS.gene03101:CDS
GGATCAGGAACAACTACCAC+TGG 0.574913 2.3:-68966826 None:intergenic
TCGGAAGCATCGATTACCGC+TGG 0.577204 2.3:-68966940 None:intergenic
GATAAAATTACAGTACTCGA+AGG 0.578742 2.3:+68966366 MS.gene03101:CDS
ACTGATGACATTGTTTCTTG+GGG 0.579964 2.3:+68965361 MS.gene03101:CDS
GTCAAGTGCTGAAGAAACCT+GGG 0.583533 2.3:+68966440 MS.gene03101:CDS
TCAGGGACAGCTGCAACAGT+TGG 0.583782 2.3:-68966979 None:intergenic
GAAGATATACCGAGTCGAGT+TGG 0.590581 2.3:+68967102 MS.gene03101:CDS
TATTATAATCAGTAGTAACC+GGG 0.593232 2.3:-68967038 None:intergenic
AGGAACAACTACCACTGGCA+TGG 0.597086 2.3:-68966821 None:intergenic
CTTCTGGTTCAACAAAATCA+GGG 0.603287 2.3:-68966996 None:intergenic
TGATCCAGTTGCAACTGAGT+CGG 0.607702 2.3:+68966843 MS.gene03101:CDS
TGGCTCAACTACAACAAGAT+CGG 0.609117 2.3:-68966959 None:intergenic
TCCGGTTGCAACTGAGCCAG+CGG 0.609490 2.3:+68966924 MS.gene03101:CDS
GTCATTTGGAAACAGTGGAA+AGG 0.611941 2.3:+68966389 MS.gene03101:CDS
CTAGTGGAGCAGCAACACCT+TGG 0.613717 2.3:-68966234 None:intergenic
TAAGTCTTAGTGAGAAAAGG+AGG 0.624943 2.3:-68965316 None:intergenic
ATCTTATGAAGAATATCCAA+AGG 0.635890 2.3:+68966170 MS.gene03101:CDS
ATAAAATTACAGTACTCGAA+GGG 0.640506 2.3:+68966367 MS.gene03101:CDS
GTAACCGGGGATGTTACGAC+GGG 0.648034 2.3:-68967024 None:intergenic
ACAACCCGTCGTAACATCCC+CGG 0.648155 2.3:+68967020 MS.gene03101:CDS
ATCATCAATGACAAGTTGGG+AGG 0.652244 2.3:+68966648 MS.gene03101:CDS
GTCTCTTCTATCATTAAACG+TGG 0.666811 2.3:+68966606 MS.gene03101:CDS
CGACATGAACTCCATGCCAG+TGG 0.675176 2.3:+68966810 MS.gene03101:CDS
GCTAGCATTGAAGATCATGT+GGG 0.675912 2.3:+68966544 MS.gene03101:CDS
AATGATAGAAGAGACACACT+CGG 0.677326 2.3:-68966598 None:intergenic
ATGATAGAAGAGACACACTC+GGG 0.678625 2.3:-68966597 None:intergenic
AGTAACCGGGGATGTTACGA+CGG 0.681684 2.3:-68967025 None:intergenic
GAAGGGTCATTTGGAAACAG+TGG 0.685082 2.3:+68966384 MS.gene03101:CDS
ATTATAATCAGTAGTAACCG+GGG 0.692233 2.3:-68967037 None:intergenic
GGAATGATGGAAGAAGCTCA+GGG 0.733848 2.3:+68965274 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTATAATAATGAATTTT+GGG + chr2.3:68967050-68967069 MS.gene03101:CDS 10.0%
!!! TTATTGTTTTTTTATTAAGT+TGG - chr2.3:68965929-68965948 None:intergenic 10.0%
!!! CTGATTATAATAATGAATTT+TGG + chr2.3:68967049-68967068 MS.gene03101:CDS 15.0%
!!! GATTATAATAATGAATTTTG+GGG + chr2.3:68967051-68967070 MS.gene03101:CDS 15.0%
!!! TTTTTTTAATCATTCCATTA+AGG + chr2.3:68965600-68965619 MS.gene03101:intron 15.0%
!! AAAAATTGATACACAACTAT+GGG + chr2.3:68966111-68966130 MS.gene03101:CDS 20.0%
!! AAGCAATAAAAAAACCTTAA+TGG - chr2.3:68965617-68965636 None:intergenic 20.0%
!! ATAAAAGAACAAAGTTTGAT+TGG - chr2.3:68965884-68965903 None:intergenic 20.0%
!! TTAAGTAAATCAATCAAATC+AGG - chr2.3:68965717-68965736 None:intergenic 20.0%
!! TTATTATAATCAGTAGTAAC+CGG - chr2.3:68967042-68967061 None:intergenic 20.0%
!!! TTAAGCTTATGTATTTTCAT+AGG + chr2.3:68965733-68965752 MS.gene03101:intron 20.0%
!!! TTATTATGGTTAAAGTATTG+AGG - chr2.3:68965445-68965464 None:intergenic 20.0%
! AAGCAATCAATAAACCTTAA+TGG - chr2.3:68966053-68966072 None:intergenic 25.0%
! AGCAATCAATAAACCTTAAT+GGG - chr2.3:68966052-68966071 None:intergenic 25.0%
! ATAAAATTACAGTACTCGAA+GGG + chr2.3:68966367-68966386 MS.gene03101:CDS 25.0%
! ATCTTATGAAGAATATCCAA+AGG + chr2.3:68966170-68966189 MS.gene03101:CDS 25.0%
! CTTTAATGTACTTCATTTCA+TGG + chr2.3:68965507-68965526 MS.gene03101:intron 25.0%
! GAAAAATTGATACACAACTA+TGG + chr2.3:68966110-68966129 MS.gene03101:CDS 25.0%
! GAGGAGATTAAAAATTATCT+TGG + chr2.3:68966667-68966686 MS.gene03101:CDS 25.0%
! GTTAGAAAAATTGATCATAG+TGG + chr2.3:68965670-68965689 MS.gene03101:intron 25.0%
! TATTATAATCAGTAGTAACC+GGG - chr2.3:68967041-68967060 None:intergenic 25.0%
! TGAAACTTGAGAAGTTATTA+TGG - chr2.3:68965459-68965478 None:intergenic 25.0%
!! TTACAAAAAGGATTGTTTCT+CGG - chr2.3:68966520-68966539 None:intergenic 25.0%
!! TTAGACTGTGTTATGTTTTT+CGG + chr2.3:68965635-68965654 MS.gene03101:intron 25.0%
!!! CTGATGAAAGTTTTATTGTT+TGG + chr2.3:68965389-68965408 MS.gene03101:CDS 25.0%
!!! CTTTTTTTTATCACCCATTA+AGG + chr2.3:68966036-68966055 MS.gene03101:intron 25.0%
AGTTGCATACAAGATGTTAT+TGG - chr2.3:68966757-68966776 None:intergenic 30.0%
ATGCTAGCTACATTACAAAA+AGG - chr2.3:68966532-68966551 None:intergenic 30.0%
ATTATAATCAGTAGTAACCG+GGG - chr2.3:68967040-68967059 None:intergenic 30.0%
GAGTCATCAAAATCTACATT+CGG - chr2.3:68966715-68966734 None:intergenic 30.0%
GATAAAATTACAGTACTCGA+AGG + chr2.3:68966366-68966385 MS.gene03101:CDS 30.0%
GATGACTCAATGAATTATGT+AGG + chr2.3:68966727-68966746 MS.gene03101:CDS 30.0%
TAAGACTTATGATATGGTTG+AGG + chr2.3:68965330-68965349 MS.gene03101:CDS 30.0%
TCATAAGTCTTAGTGAGAAA+AGG - chr2.3:68965322-68965341 None:intergenic 30.0%
TCTCACTAAGACTTATGATA+TGG + chr2.3:68965324-68965343 MS.gene03101:CDS 30.0%
TTAGGAACAACGATTACATT+CGG - chr2.3:68966904-68966923 None:intergenic 30.0%
! AACTGATGACATTGTTTCTT+GGG + chr2.3:68965360-68965379 MS.gene03101:CDS 30.0%
! TTGAACTGTCTTATGGTTTT+TGG + chr2.3:68966071-68966090 MS.gene03101:intron 30.0%
!! TAGAAGATCAAAGCATTGTT+TGG - chr2.3:68966005-68966024 None:intergenic 30.0%
!!! TATGGTTTTTGGTTTGATCA+GGG + chr2.3:68966082-68966101 MS.gene03101:intron 30.0%
!!! TTATGGTTTTTGGTTTGATC+AGG + chr2.3:68966081-68966100 MS.gene03101:intron 30.0%
AATGATAGAAGAGACACACT+CGG - chr2.3:68966601-68966620 None:intergenic 35.0%
CAAAAACTACAGAGCGAAAA+AGG + chr2.3:68966488-68966507 MS.gene03101:CDS 35.0%
CAGCTTAATACCTATGTAAG+CGG + chr2.3:68965484-68965503 MS.gene03101:intron 35.0%
CGAATCATCAATGACAAGTT+GGG + chr2.3:68966645-68966664 MS.gene03101:CDS 35.0%
GAAACAATGTCATCAGTTGA+AGG - chr2.3:68965358-68965377 None:intergenic 35.0%
GTCTCTTCTATCATTAAACG+TGG + chr2.3:68966606-68966625 MS.gene03101:CDS 35.0%
GTTTCTTGAACTTCAGAGAA+AGG + chr2.3:68966321-68966340 MS.gene03101:CDS 35.0%
TAAGTCTTAGTGAGAAAAGG+AGG - chr2.3:68965319-68965338 None:intergenic 35.0%
TACATTAAAGCCGCTTACAT+AGG - chr2.3:68965497-68965516 None:intergenic 35.0%
TCGAATCATCAATGACAAGT+TGG + chr2.3:68966644-68966663 MS.gene03101:CDS 35.0%
TGATTGCTTGAACTGTCTTA+TGG + chr2.3:68966064-68966083 MS.gene03101:intron 35.0%
TGTAATCGTTGTTCCTAATC+CGG + chr2.3:68966906-68966925 MS.gene03101:CDS 35.0%
! ACTGATGACATTGTTTCTTG+GGG + chr2.3:68965361-68965380 MS.gene03101:CDS 35.0%
! CAACTGATGACATTGTTTCT+TGG + chr2.3:68965359-68965378 MS.gene03101:CDS 35.0%
! CGGATGTCTTTGAAAATAAG+AGG - chr2.3:68966695-68966714 None:intergenic 35.0%
! TATAAACTGTTTTGCGCCTT+TGG - chr2.3:68966189-68966208 None:intergenic 35.0%
!! CTTCTGGTTCAACAAAATCA+GGG - chr2.3:68966999-68967018 None:intergenic 35.0%
!! TCTTCTGGTTCAACAAAATC+AGG - chr2.3:68967000-68967019 None:intergenic 35.0%
AAACTACAGAGCGAAAAAGG+AGG + chr2.3:68966491-68966510 MS.gene03101:CDS 40.0%
AAGAAACCTGGGAATGAGTT+CGG + chr2.3:68966451-68966470 MS.gene03101:CDS 40.0%
ACAATACTTGCAGGACGAAT+CGG + chr2.3:68967074-68967093 MS.gene03101:CDS 40.0%
ATGATAGAAGAGACACACTC+GGG - chr2.3:68966600-68966619 None:intergenic 40.0%
CAAAGTGTGCTCTCTTATGT+TGG + chr2.3:68966418-68966437 MS.gene03101:CDS 40.0%
GTCATTTGGAAACAGTGGAA+AGG + chr2.3:68966389-68966408 MS.gene03101:CDS 40.0%
TGAACTTCAGAGAAAGGAAG+AGG + chr2.3:68966327-68966346 MS.gene03101:CDS 40.0%
TGGCTCAACTACAACAAGAT+CGG - chr2.3:68966962-68966981 None:intergenic 40.0%
! AGCTAGCATTGAAGATCATG+TGG + chr2.3:68966543-68966562 MS.gene03101:CDS 40.0%
! ATCATCAATGACAAGTTGGG+AGG + chr2.3:68966648-68966667 MS.gene03101:CDS 40.0%
! CTCTTTTGGTACGCCAATAT+TGG - chr2.3:68967128-68967147 None:intergenic 40.0%
! GCTAGCATTGAAGATCATGT+GGG + chr2.3:68966544-68966563 MS.gene03101:CDS 40.0%
!! ATGTCGACTTCTAGTGACTT+GGG - chr2.3:68966796-68966815 None:intergenic 40.0%
!! ATTTTGGGGACAATACTTGC+AGG + chr2.3:68967065-68967084 MS.gene03101:CDS 40.0%
ACAGTACTCGAAGGGTCATT+TGG + chr2.3:68966375-68966394 MS.gene03101:CDS 45.0%
AGCATTCAACGTCTGTCGAT+CGG - chr2.3:68966266-68966285 None:intergenic 45.0%
CAATATTGGCCAACTCGACT+CGG - chr2.3:68967114-68967133 None:intergenic 45.0%
CATATACCGAACTCATTCCC+AGG - chr2.3:68966460-68966479 None:intergenic 45.0%
CATGAGCATTCTGCGAAGAA+TGG - chr2.3:68966213-68966232 None:intergenic 45.0%
CATTCTTCGCAGAATGCTCA+TGG + chr2.3:68966211-68966230 MS.gene03101:CDS 45.0%
GAAGATATACCGAGTCGAGT+TGG + chr2.3:68967102-68967121 MS.gene03101:CDS 45.0%
GAAGGGTCATTTGGAAACAG+TGG + chr2.3:68966384-68966403 MS.gene03101:CDS 45.0%
GGCTCAGTTGCATCATGATT+AGG - chr2.3:68966883-68966902 None:intergenic 45.0%
TCAGGGTAGTAGTTCCGATA+AGG + chr2.3:68965291-68965310 MS.gene03101:CDS 45.0%
TGATCCAGTTGCAACTGAGT+CGG + chr2.3:68966843-68966862 MS.gene03101:CDS 45.0%
! CGCTCTGTAGTTTTTGTCAG+CGG - chr2.3:68966484-68966503 None:intergenic 45.0%
!! CATGTCGACTTCTAGTGACT+TGG - chr2.3:68966797-68966816 None:intergenic 45.0%
!! GAGAAAAGGAGGCACCTTAT+CGG - chr2.3:68965308-68965327 None:intergenic 45.0%
!! GTCAAGTGCTGAAGAAACCT+GGG + chr2.3:68966440-68966459 MS.gene03101:CDS 45.0%
ACATCCGACTCAGTTGCAAC+TGG - chr2.3:68966850-68966869 None:intergenic 50.0%
AGGAACAACTACCACTGGCA+TGG - chr2.3:68966824-68966843 None:intergenic 50.0%
AGTAACCGGGGATGTTACGA+CGG - chr2.3:68967028-68967047 None:intergenic 50.0%
GACTCAGTTGCAACTGGATC+AGG - chr2.3:68966844-68966863 None:intergenic 50.0%
GGATCAGGAACAACTACCAC+TGG - chr2.3:68966829-68966848 None:intergenic 50.0%
TGTCGATCGGATTCTGCTAG+TGG - chr2.3:68966253-68966272 None:intergenic 50.0%
!! CGAGTCGAGTTGGCCAATAT+TGG + chr2.3:68967112-68967131 MS.gene03101:CDS 50.0%
!! GGTCAAGTGCTGAAGAAACC+TGG + chr2.3:68966439-68966458 MS.gene03101:CDS 50.0%
!! GTTACGACGGGTTGTTCTTC+TGG - chr2.3:68967015-68967034 None:intergenic 50.0%
ACAACCCGTCGTAACATCCC+CGG + chr2.3:68967020-68967039 MS.gene03101:CDS 55.0%
CGACATGAACTCCATGCCAG+TGG + chr2.3:68966810-68966829 MS.gene03101:CDS 55.0%
CTAGTGGAGCAGCAACACCT+TGG - chr2.3:68966237-68966256 None:intergenic 55.0%
GGCTCAGTTGCAACCGGATT+AGG - chr2.3:68966922-68966941 None:intergenic 55.0%
GTAACCGGGGATGTTACGAC+GGG - chr2.3:68967027-68967046 None:intergenic 55.0%
TCAGGGACAGCTGCAACAGT+TGG - chr2.3:68966982-68967001 None:intergenic 55.0%
TCGCAGAATGCTCATGGCCA+AGG + chr2.3:68966217-68966236 MS.gene03101:CDS 55.0%
!! TCGGAAGCATCGATTACCGC+TGG - chr2.3:68966943-68966962 None:intergenic 55.0%
TCCGGTTGCAACTGAGCCAG+CGG + chr2.3:68966924-68966943 MS.gene03101:CDS 60.0%
!! ACCGCTGGCTCAGTTGCAAC+CGG - chr2.3:68966928-68966947 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 68965280 68967152 68965280 ID=MS.gene03101
chr2.3 mRNA 68965280 68967152 68965280 ID=MS.gene03101.t1;Parent=MS.gene03101
chr2.3 exon 68965280 68965498 68965280 ID=MS.gene03101.t1.exon1;Parent=MS.gene03101.t1
chr2.3 CDS 68965280 68965498 68965280 ID=cds.MS.gene03101.t1;Parent=MS.gene03101.t1
chr2.3 exon 68966103 68967152 68966103 ID=MS.gene03101.t1.exon2;Parent=MS.gene03101.t1
chr2.3 CDS 68966103 68967152 68966103 ID=cds.MS.gene03101.t1;Parent=MS.gene03101.t1
Gene Sequence

>MS.gene03101

ATGGAAGAAGCTCAGGGTAGTAGTTCCGATAAGGTGCCTCCTTTTCTCACTAAGACTTATGATATGGTTGAGGATCCTTCAACTGATGACATTGTTTCTTGGGGTGCTACTGATGAAAGTTTTATTGTTTGGAATAAACTAGATTTTGAAAAAGATGTGTTGCCTCAATACTTTAACCATAATAACTTCTCAAGTTTCATCAGACAGCTTAATACCTATGTAAGCGGCTTTAATGTACTTCATTTCATGGATTTTTAAATTGTTTTGTTATTTCGTTAATGTATAATGTTTTGTTATTGTCTTAATGTTGTCTTTTTTTTTTTTTTTAATCATTCCATTAAGGTTTTTTTATTGCTTAGACTGTGTTATGTTTTTCGGTTTGATTATGTCGTTAGAAAAATTGATCATAGTGGATTTGTTAATTTTTTTATGAGCCTGATTTGATTGATTTACTTAAGCTTATGTATTTTCATAGGCACGTGTAAGACTAATTGAGATAGCTTATAGAAAAACAACTTATAACATGTTCATAAGTTATTCAGTTTATTTTATTTTCGTTGTGAGATAGCTTATGATATAAGCACTTTATTAAGTTGTTGATCCAATCAAACTTTGTTCTTTTATTGTTACTGTATTTTCATCACTGCCAACTTAATAAAAAAACAATAACAACAAAAATCATATAAGTGTTTATCTTATAAGCACTCAATTAACTTGCTCATCCAAACAATGCTTTGATCTTCTATTTTTTTCTCTCTTTTTTTTATCACCCATTAAGGTTTATTGATTGCTTGAACTGTCTTATGGTTTTTGGTTTGATCAGGGCTTTAGAAAAATTGATACACAACTATGGGAATACGCAAACGATGATTTCGTAAGAAATCAAAAACATCTTATGAAGAATATCCAAAGGCGCAAAACAGTTTATAGCCATTCTTCGCAGAATGCTCATGGCCAAGGTGTTGCTGCTCCACTAGCAGAATCCGATCGACAGACGTTGAATGCTCATATTCTAAAACTTAAACACGACAATGAACAAATGTTTCTTGAACTTCAGAGAAAGGAAGAGGAGAGAAAAATGCATGAGATAAAATTACAGTACTCGAAGGGTCATTTGGAAACAGTGGAAAGGAAACATCAAAGTGTGCTCTCTTATGTTGGTCAAGTGCTGAAGAAACCTGGGAATGAGTTCGGTATATGTCCGCTGACAAAAACTACAGAGCGAAAAAGGAGGATTCCGAGAAACAATCCTTTTTGTAATGTAGCTAGCATTGAAGATCATGTGGGAACTTCTCATGTAATACATAAAGAAAACGACCCGAGTGTGTCTCTTCTATCATTAAACGTGGAACAATTAAATTTGCTCGAATCATCAATGACAAGTTGGGAGGAGATTAAAAATTATCTTGGTGCCTCTTATTTTCAAAGACATCCGAATGTAGATTTTGATGACTCAATGAATTATGTAGGCTGTCCAATAACATCTTGTATGCAACTAGATGTTGAAGTTCAGCCCAAGTCACTAGAAGTCGACATGAACTCCATGCCAGTGGTAGTTGTTCCTGATCCAGTTGCAACTGAGTCGGATGTAGTTGTTAATCCTAATCATGATGCAACTGAGCCGAATGTAATCGTTGTTCCTAATCCGGTTGCAACTGAGCCAGCGGTAATCGATGCTTCCGATCTTGTTGTAGTTGAGCCAACTGTTGCAGCTGTCCCTGATTTTGTTGAACCAGAAGAACAACCCGTCGTAACATCCCCGGTTACTACTGATTATAATAATGAATTTTGGGGACAATACTTGCAGGACGAATCGGAAAATGAAGATATACCGAGTCGAGTTGGCCAATATTGGCGTACCAAAAGAGTCTAA
Protein sequence

>MS.gene03101.t1

MEEAQGSSSDKVPPFLTKTYDMVEDPSTDDIVSWGATDESFIVWNKLDFEKDVLPQYFNHNNFSSFIRQLNTYGFRKIDTQLWEYANDDFVRNQKHLMKNIQRRKTVYSHSSQNAHGQGVAAPLAESDRQTLNAHILKLKHDNEQMFLELQRKEEERKMHEIKLQYSKGHLETVERKHQSVLSYVGQVLKKPGNEFGICPLTKTTERKRRIPRNNPFCNVASIEDHVGTSHVIHKENDPSVSLLSLNVEQLNLLESSMTSWEEIKNYLGASYFQRHPNVDFDDSMNYVGCPITSCMQLDVEVQPKSLEVDMNSMPVVVVPDPVATESDVVVNPNHDATEPNVIVVPNPVATEPAVIDASDLVVVEPTVAAVPDFVEPEEQPVVTSPVTTDYNNEFWGQYLQDESENEDIPSRVGQYWRTKRV