AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031048

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031048.t1 MTR_6g012450 95.833 432 18 0 1 432 64 495 0.0 867
MS.gene031048.t1 MTR_7g010950 60.514 428 155 6 9 432 69 486 4.33e-166 476
MS.gene031048.t1 MTR_4g082060 46.882 433 190 15 11 430 58 463 4.67e-112 337
MS.gene031048.t1 MTR_3g435480 46.305 406 165 15 39 432 101 465 1.67e-93 290
MS.gene031048.t1 MTR_8g044220 37.435 382 181 14 60 431 105 438 1.70e-65 216
MS.gene031048.t1 MTR_7g086780 37.647 425 199 15 12 412 39 421 2.82e-65 215
MS.gene031048.t1 MTR_5g041530 36.342 421 146 12 11 430 80 379 5.40e-64 211
MS.gene031048.t1 MTR_5g041380 35.990 414 136 16 23 430 79 369 9.02e-57 191
MS.gene031048.t1 MTR_5g041400 36.124 418 130 17 23 430 71 361 2.42e-56 190
MS.gene031048.t1 MTR_6g027460 35.207 338 164 11 30 332 51 368 4.69e-45 160
MS.gene031048.t1 MTR_6g027450 40.741 243 113 8 33 267 47 266 1.17e-42 153
MS.gene031048.t1 MTR_5g041420 51.429 140 60 3 4 137 71 208 2.78e-39 144
MS.gene031048.t1 MTR_2g016030 81.538 65 11 1 63 126 36 100 8.70e-34 124
MS.gene031048.t1 MTR_3g091820 53.846 91 35 1 45 128 8 98 4.91e-26 107
MS.gene031048.t1 MTR_8g479350 75.926 54 13 0 73 126 68 121 4.19e-25 105
MS.gene031048.t1 MTR_2g096740 50.549 91 44 1 37 126 40 130 4.27e-25 104
MS.gene031048.t1 MTR_2g096740 50.549 91 44 1 37 126 25 115 4.29e-25 104
MS.gene031048.t1 MTR_8g079060 44.915 118 53 3 73 181 29 143 4.35e-25 103
MS.gene031048.t1 MTR_8g027295 50.538 93 36 1 68 150 19 111 7.62e-25 103
MS.gene031048.t1 MTR_4g022370 68.966 58 18 0 69 126 78 135 7.82e-25 105
MS.gene031048.t1 MTR_4g063780 51.087 92 43 1 66 155 68 159 2.04e-24 103
MS.gene031048.t1 MTR_2g093220 69.492 59 18 0 68 126 35 93 2.76e-24 102
MS.gene031048.t1 MTR_2g059540 77.551 49 11 0 73 121 31 79 3.21e-24 100
MS.gene031048.t1 MTR_8g015840 75.000 52 13 0 73 124 20 71 3.31e-24 100
MS.gene031048.t1 MTR_4g109980 69.811 53 16 0 71 123 38 90 9.17e-24 101
MS.gene031048.t1 MTR_1g077600 69.811 53 16 0 73 125 43 95 2.22e-23 99.4
MS.gene031048.t1 MTR_1g077600 62.712 59 22 0 67 125 37 95 2.48e-23 99.8
MS.gene031048.t1 MTR_7g024670 76.471 51 12 0 75 125 79 129 3.57e-23 100
MS.gene031048.t1 MTR_4g088580 75.000 52 13 0 75 126 57 108 4.38e-23 100
MS.gene031048.t1 MTR_3g090430 58.108 74 20 1 75 148 53 115 5.60e-23 99.4
MS.gene031048.t1 MTR_8g068210 47.368 95 45 2 61 155 20 109 5.87e-23 99.4
MS.gene031048.t1 MTR_5g031440 67.273 55 18 0 69 123 39 93 8.32e-23 99.0
MS.gene031048.t1 MTR_2g014170 55.844 77 31 1 45 121 20 93 1.44e-22 97.8
MS.gene031048.t1 MTR_7g059400 71.154 52 15 0 75 126 78 129 1.82e-22 98.2
MS.gene031048.t1 MTR_3g077750 45.455 110 53 1 35 144 30 132 2.15e-22 97.8
MS.gene031048.t1 MTR_1g056810 54.321 81 34 2 68 145 6 86 2.49e-22 96.7
MS.gene031048.t1 MTR_4g461080 65.625 64 21 1 63 125 18 81 2.68e-22 96.3
MS.gene031048.t1 MTR_4g089095 66.667 54 18 0 73 126 50 103 4.48e-22 96.3
MS.gene031048.t1 MTR_4g089095 66.667 54 18 0 73 126 16 69 6.26e-22 95.1
MS.gene031048.t1 MTR_2g013370 73.077 52 13 1 75 126 48 98 1.30e-21 94.4
MS.gene031048.t1 MTR_2g014060 70.000 50 15 0 75 124 27 76 3.01e-21 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031048.t1 AT5G39660 44.273 454 155 22 2 432 79 457 2.45e-98 302
MS.gene031048.t1 AT5G39660 44.273 454 155 22 2 432 79 457 2.45e-98 302
MS.gene031048.t1 AT5G39660 44.273 454 155 22 2 432 79 457 2.45e-98 302
MS.gene031048.t1 AT3G47500 42.995 414 177 17 39 430 70 446 3.10e-79 252
MS.gene031048.t1 AT5G62430 38.228 395 113 18 43 430 26 296 9.21e-58 192
MS.gene031048.t1 AT1G69570 34.409 372 138 14 66 431 125 396 5.37e-46 164
MS.gene031048.t1 AT1G26790 57.463 134 48 3 18 147 59 187 3.71e-38 142
MS.gene031048.t1 AT1G29160 86.667 60 8 0 67 126 56 115 2.53e-35 129
MS.gene031048.t1 AT2G34140 83.333 60 10 0 67 126 52 111 1.22e-33 124
MS.gene031048.t1 AT5G60850 61.429 70 27 0 61 130 39 108 5.56e-26 107
MS.gene031048.t1 AT1G51700 72.881 59 15 1 73 130 33 91 1.75e-25 103
MS.gene031048.t1 AT3G55370 60.870 69 27 0 69 137 72 140 3.07e-25 105
MS.gene031048.t1 AT3G55370 60.870 69 27 0 69 137 72 140 3.56e-25 106
MS.gene031048.t1 AT5G60200 53.763 93 41 2 69 159 51 143 4.33e-25 103
MS.gene031048.t1 AT3G55370 60.870 69 27 0 69 137 117 185 5.17e-25 105
MS.gene031048.t1 AT3G21270 77.358 53 12 0 73 125 29 81 1.19e-24 101
MS.gene031048.t1 AT1G07640 61.111 72 25 1 54 125 5 73 1.44e-24 102
MS.gene031048.t1 AT2G28810 65.574 61 21 0 64 124 68 128 1.48e-24 103
MS.gene031048.t1 AT3G45610 56.944 72 30 1 69 139 36 107 1.62e-24 102
MS.gene031048.t1 AT2G28810 65.574 61 21 0 64 124 85 145 2.25e-24 103
MS.gene031048.t1 AT3G61850 63.492 63 23 0 68 130 57 119 2.50e-24 102
MS.gene031048.t1 AT3G61850 63.492 63 23 0 68 130 57 119 2.50e-24 102
MS.gene031048.t1 AT3G61850 63.492 63 23 0 68 130 69 131 2.63e-24 102
MS.gene031048.t1 AT3G50410 73.585 53 14 0 73 125 30 82 2.94e-24 101
MS.gene031048.t1 AT1G07640 75.472 53 13 0 73 125 77 129 3.17e-24 103
MS.gene031048.t1 AT3G61850 63.492 63 23 0 68 130 57 119 3.71e-24 102
MS.gene031048.t1 AT3G61850 63.492 63 23 0 68 130 69 131 4.12e-24 102
MS.gene031048.t1 AT1G07640 75.472 53 13 0 73 125 85 137 4.39e-24 102
MS.gene031048.t1 AT5G65590 73.214 56 15 0 73 128 41 96 4.50e-24 102
MS.gene031048.t1 AT2G37590 67.241 58 19 0 69 126 85 142 4.53e-24 102
MS.gene031048.t1 AT4G38000 52.874 87 39 2 72 157 40 125 4.80e-24 100
MS.gene031048.t1 AT4G24060 68.421 57 18 0 70 126 50 106 6.15e-24 102
MS.gene031048.t1 AT1G64620 71.154 52 15 0 70 121 46 97 3.50e-23 100
MS.gene031048.t1 AT1G28310 72.222 54 15 0 73 126 27 80 4.64e-23 99.4
MS.gene031048.t1 AT5G02460 67.241 58 19 0 69 126 91 148 5.44e-23 100
MS.gene031048.t1 AT1G28310 72.222 54 15 0 73 126 51 104 7.95e-23 99.0
MS.gene031048.t1 AT2G28510 69.643 56 17 0 75 130 50 105 8.40e-23 98.2
MS.gene031048.t1 AT5G66940 67.925 53 17 0 73 125 32 84 2.14e-22 95.5
MS.gene031048.t1 AT4G00940 66.102 59 20 0 68 126 63 121 2.78e-22 96.7
MS.gene031048.t1 AT4G00940 66.102 59 20 0 68 126 63 121 2.78e-22 96.7
MS.gene031048.t1 AT4G00940 66.102 59 20 0 68 126 63 121 2.78e-22 96.7
MS.gene031048.t1 AT1G47655 73.469 49 13 0 73 121 29 77 3.89e-22 94.4
MS.gene031048.t1 AT2G46590 67.925 53 17 0 68 120 63 115 7.03e-22 96.7
MS.gene031048.t1 AT3G52440 69.231 52 16 0 75 126 27 78 7.97e-22 94.4
MS.gene031048.t1 AT2G46590 67.925 53 17 0 68 120 75 127 8.58e-22 96.7
MS.gene031048.t1 AT3G52440 69.231 52 16 0 75 126 46 97 1.08e-21 94.4
MS.gene031048.t1 AT1G21340 66.667 54 18 0 75 128 40 93 1.26e-21 94.4
MS.gene031048.t1 AT4G21050 57.353 68 29 0 59 126 10 77 4.58e-21 91.3
MS.gene031048.t1 AT5G62940 69.388 49 15 0 75 123 75 123 8.17e-20 90.9
MS.gene031048.t1 AT4G21040 49.412 85 36 2 75 159 27 104 9.52e-19 85.5
MS.gene031048.t1 AT4G21080 53.333 75 31 2 75 146 27 100 6.15e-18 83.6
MS.gene031048.t1 AT4G21030 44.000 75 39 2 75 146 23 97 7.52e-11 61.6

Find 111 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATCCTCCACCGGCTTAT+TGG 0.171714 6.2:+6546377 MS.gene031048:CDS
CTATCCTCCACCGGCTTATT+GGG 0.204943 6.2:+6546378 MS.gene031048:CDS
ATTGAAAACTTCAAAGATTA+TGG 0.206877 6.2:+6545655 MS.gene031048:CDS
GGTGGGAAGCTTTGACAATT+TGG 0.253300 6.2:-6546241 None:intergenic
CTGTTTCGGGTACAGTTATT+TGG 0.254197 6.2:-6545913 None:intergenic
GTTATTGTAGTAGCAGAATT+TGG 0.264718 6.2:-6545762 None:intergenic
GCAAGAAATGCCAGAGATAC+TGG 0.298374 6.2:+6545813 MS.gene031048:CDS
GAGTTAACGGCTGCACTATT+TGG 0.304692 6.2:-6546454 None:intergenic
AGAATTCTGAACAGCTGTTT+CGG 0.322405 6.2:-6545927 None:intergenic
GAATTCTGAACAGCTGTTTC+GGG 0.323421 6.2:-6545926 None:intergenic
GCTGGATTGGCCTGCATGGC+AGG 0.325373 6.2:-6546751 None:intergenic
TTACCTAAGGTTGGCGAGTT+AGG 0.325633 6.2:-6546481 None:intergenic
GGTGTCCATGCTATTACAAC+GGG 0.366283 6.2:-6545741 None:intergenic
TGCTGCTGGATTGGCCTGCA+TGG 0.384791 6.2:-6546755 None:intergenic
GCATTGAACCTTGCTGATAA+AGG 0.387819 6.2:+6546052 MS.gene031048:CDS
CCTAGACATTGCTGCTGGAT+TGG 0.394113 6.2:-6546764 None:intergenic
ACATGAATCCGTAGACCTTC+CGG 0.402858 6.2:-6546109 None:intergenic
TGATGTGTCCGAAGATTTGA+TGG 0.404612 6.2:-6546167 None:intergenic
ATGGCACAGTCTTTACATTC+AGG 0.405324 6.2:+6545996 MS.gene031048:CDS
ACCTCAATATTGACAACTCT+CGG 0.408584 6.2:+6546634 MS.gene031048:CDS
CAACCTTAGGTAAGCATTCA+AGG 0.416860 6.2:+6546491 MS.gene031048:CDS
CCCCGGCAGTCCAGTATCTC+TGG 0.422379 6.2:-6545823 None:intergenic
GGCAAAAGCCAAGGGGCACC+AGG 0.424018 6.2:-6546280 None:intergenic
TTCCCTTGAATGCTTACCTA+AGG 0.425560 6.2:-6546494 None:intergenic
CGAGTTAGGACCGGAGTTAA+CGG 0.433388 6.2:-6546467 None:intergenic
TTCATTGCTCTTTGAACCAA+AGG 0.434809 6.2:-6546707 None:intergenic
CCCGAGAGTTGTCAATATTG+AGG 0.441514 6.2:-6546635 None:intergenic
AGACACAAACTCAAGATTAG+TGG 0.448603 6.2:+6545592 MS.gene031048:CDS
ATAAAGAAGAAAAGTCCCTT+TGG 0.450455 6.2:+6546566 MS.gene031048:CDS
GCCAGAGATACTGGACTGCC+GGG 0.460238 6.2:+6545822 MS.gene031048:CDS
TGCCGTGGAATCCATCTCAA+TGG 0.462888 6.2:+6546299 MS.gene031048:CDS
CTCAAACCAACCGACTCAAC+AGG 0.464405 6.2:+6546526 MS.gene031048:CDS
TAAAGAAGAAAAGTCCCTTT+GGG 0.467980 6.2:+6546567 MS.gene031048:CDS
CCATGGATTGTTCCACGCAC+CGG 0.474496 6.2:-6546413 None:intergenic
GGTCCTAACTCGCCAACCTT+AGG 0.475475 6.2:+6546478 MS.gene031048:CDS
CGTACTACCCTGGTGCCCCT+TGG 0.476868 6.2:+6546272 MS.gene031048:CDS
GCAAAACTCACCTGCCATGC+AGG 0.477299 6.2:+6546741 MS.gene031048:CDS
TCAGAACCTGTTGAGTCGGT+TGG 0.477638 6.2:-6546532 None:intergenic
TGCCAGAGATACTGGACTGC+CGG 0.478106 6.2:+6545821 MS.gene031048:CDS
TGATCATTCCATCAAATCTT+CGG 0.483222 6.2:+6546159 MS.gene031048:CDS
CTTGAATGCTTACCTAAGGT+TGG 0.484913 6.2:-6546490 None:intergenic
CACATTTCTCATGGCTCCCC+CGG 0.486523 6.2:-6545840 None:intergenic
GAAGGATGATGGACTCCGTT+TGG 0.487346 6.2:-6545962 None:intergenic
AACTTGTTCAAGAGAACTGC+TGG 0.493603 6.2:-6546215 None:intergenic
TTCCTACGACCGGCACCTAC+AGG 0.494832 6.2:-6545863 None:intergenic
TACAGTTCAGTGAAGGATGA+TGG 0.503313 6.2:-6545973 None:intergenic
TTCGTCAGAACCTGTTGAGT+CGG 0.506659 6.2:-6546536 None:intergenic
TCTCAATCCGACTCGCCAAA+CGG 0.513729 6.2:+6545947 MS.gene031048:CDS
CATGGATTGTTCCACGCACC+GGG 0.516259 6.2:-6546412 None:intergenic
TTATAAGCTACATAATTATG+AGG 0.516746 6.2:-6546806 None:intergenic
ATGGACTCCGTTTGGCGAGT+CGG 0.520233 6.2:-6545954 None:intergenic
TCATTAGACCGGAAGGTCTA+CGG 0.522416 6.2:+6546101 MS.gene031048:CDS
CCAATCCAGCAGCAATGTCT+AGG 0.524624 6.2:+6546764 MS.gene031048:CDS
TCTCACCCAATCATCAGAAA+AGG 0.525594 6.2:+6545559 MS.gene031048:CDS
CATCCTTCACTGAACTGTAA+TGG 0.526917 6.2:+6545977 MS.gene031048:CDS
AGTAAGGCGGACGCGATTCG+TGG 0.530810 6.2:+6546667 MS.gene031048:CDS
ATTGACCTAGACATTGCTGC+TGG 0.532105 6.2:-6546769 None:intergenic
GCTGCACTATTTGGTGAAGA+AGG 0.534001 6.2:-6546445 None:intergenic
ACTTGAGAGCTCCATTGAGA+TGG 0.535364 6.2:-6546310 None:intergenic
GTGGCATGGCAAATCCTTGT+GGG 0.536245 6.2:-6546354 None:intergenic
TGCGTGGAACAATCCATGGC+TGG 0.539604 6.2:+6546417 MS.gene031048:CDS
CCTCAATATTGACAACTCTC+GGG 0.541239 6.2:+6546635 MS.gene031048:CDS
GTAAGGCGGACGCGATTCGT+GGG 0.543719 6.2:+6546668 MS.gene031048:CDS
CAAGGGGCACCAGGGTAGTA+CGG 0.543849 6.2:-6546271 None:intergenic
CTCCATTGAGATGGATTCCA+CGG 0.551011 6.2:-6546301 None:intergenic
TGAATCGACCAAATGTAAGA+AGG 0.555366 6.2:+6545523 MS.gene031048:CDS
TATTAACTCCTTTATCAGCA+AGG 0.557069 6.2:-6546060 None:intergenic
TATCCTCCACCGGCTTATTG+GGG 0.557577 6.2:+6546379 MS.gene031048:CDS
ATTCTTGTTCTTCCTACGAC+CGG 0.559859 6.2:-6545873 None:intergenic
ATGCTAAAACCCCAATAAGC+CGG 0.561380 6.2:-6546388 None:intergenic
TGGTGTCCATGCTATTACAA+CGG 0.562401 6.2:-6545742 None:intergenic
GGATTCCACGGCAAAAGCCA+AGG 0.568149 6.2:-6546289 None:intergenic
TGCCTGTAGGTGCCGGTCGT+AGG 0.569339 6.2:+6545861 MS.gene031048:CDS
TTTGCTCGTCCTCAGTGGAG+GGG 0.569766 6.2:-6545628 None:intergenic
CGGATTCATGTACCCTATGT+TGG 0.570976 6.2:+6546121 MS.gene031048:CDS
GTGTCCCCGTTGTAATAGCA+TGG 0.578322 6.2:+6545736 MS.gene031048:CDS
AAACCCCAATAAGCCGGTGG+AGG 0.580141 6.2:-6546382 None:intergenic
ACCTACAGGCACATTTCTCA+TGG 0.581950 6.2:-6545849 None:intergenic
GGGTAGTACGGAACTTGCGG+TGG 0.584630 6.2:-6546259 None:intergenic
AACGGAATCATTAGACCGGA+AGG 0.586342 6.2:+6546094 MS.gene031048:CDS
TAAGGTTGGCGAGTTAGGAC+CGG 0.591433 6.2:-6546476 None:intergenic
CCGCAAGTTCCGTACTACCC+TGG 0.592010 6.2:+6546262 MS.gene031048:CDS
CCGGTGCGTGGAACAATCCA+TGG 0.594068 6.2:+6546413 MS.gene031048:CDS
AGAAATGTGCCTGTAGGTGC+CGG 0.595484 6.2:+6545854 MS.gene031048:CDS
ACGTTGAGGATTGATGACTT+AGG 0.598062 6.2:+6546598 MS.gene031048:CDS
CCAGGGTAGTACGGAACTTG+CGG 0.603954 6.2:-6546262 None:intergenic
GATTCCACGGCAAAAGCCAA+GGG 0.605584 6.2:-6546288 None:intergenic
AATAGTGCAGCCGTTAACTC+CGG 0.609641 6.2:+6546457 MS.gene031048:CDS
AACCTTAGGTAAGCATTCAA+GGG 0.609767 6.2:+6546492 MS.gene031048:CDS
GAAGAAGGTTGTGCCAGCCA+TGG 0.610893 6.2:-6546430 None:intergenic
TTTGGGTTCCGAAAACGTTG+AGG 0.613827 6.2:+6546584 MS.gene031048:CDS
CCAGAGATACTGGACTGCCG+GGG 0.615553 6.2:+6545823 MS.gene031048:CDS
ATGCTATTACAACGGGGACA+CGG 0.617301 6.2:-6545734 None:intergenic
TAAGGCGGACGCGATTCGTG+GGG 0.619512 6.2:+6546669 MS.gene031048:CDS
CATGCCACTCTATCCTCCAC+CGG 0.623143 6.2:+6546369 MS.gene031048:CDS
TAAGCCGGTGGAGGATAGAG+TGG 0.624963 6.2:-6546373 None:intergenic
CAGAGATACTGGACTGCCGG+GGG 0.627532 6.2:+6545824 MS.gene031048:CDS
GCAAAAGCCAAGGGGCACCA+GGG 0.629020 6.2:-6546279 None:intergenic
AGTGGCATGGCAAATCCTTG+TGG 0.633181 6.2:-6546355 None:intergenic
AGATTGCATTGATTCACACA+AGG 0.639343 6.2:-6546029 None:intergenic
GACTCAACAGGTTCTGACGA+AGG 0.640024 6.2:+6546538 MS.gene031048:CDS
AAGGCGGACGCGATTCGTGG+GGG 0.643400 6.2:+6546670 MS.gene031048:CDS
CGGTGGAGGATAGAGTGGCA+TGG 0.658087 6.2:-6546368 None:intergenic
GTGCCATTACAGTTCAGTGA+AGG 0.658325 6.2:-6545980 None:intergenic
GATTGCATTGATTCACACAA+GGG 0.666221 6.2:-6546028 None:intergenic
ATCAATTAACCCCTCCACTG+AGG 0.675714 6.2:+6545619 MS.gene031048:CDS
GGTAGTACGGAACTTGCGGT+GGG 0.677836 6.2:-6546258 None:intergenic
CTAAAACCCCAATAAGCCGG+TGG 0.682119 6.2:-6546385 None:intergenic
GCCATGAGAAATGTGCCTGT+AGG 0.725661 6.2:+6545848 MS.gene031048:CDS
ATTCCACGGCAAAAGCCAAG+GGG 0.744240 6.2:-6546287 None:intergenic
GTGTCCATGCTATTACAACG+GGG 0.773351 6.2:-6545740 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGAAAACTTCAAAGATTA+TGG + chr6.2:6545655-6545674 MS.gene031048:CDS 20.0%
!! ATCTTTTTCCTTCTTACATT+TGG - chr6.2:6545534-6545553 None:intergenic 25.0%
ATAAAGAAGAAAAGTCCCTT+TGG + chr6.2:6546566-6546585 MS.gene031048:CDS 30.0%
GTTAATATTTCCGCGAAAAA+CGG + chr6.2:6546076-6546095 MS.gene031048:CDS 30.0%
GTTATTGTAGTAGCAGAATT+TGG - chr6.2:6545765-6545784 None:intergenic 30.0%
TAAAGAAGAAAAGTCCCTTT+GGG + chr6.2:6546567-6546586 MS.gene031048:CDS 30.0%
TATTAACTCCTTTATCAGCA+AGG - chr6.2:6546063-6546082 None:intergenic 30.0%
TCTCGGGATTAAAAATAGTA+AGG + chr6.2:6546651-6546670 MS.gene031048:CDS 30.0%
TGATCATTCCATCAAATCTT+CGG + chr6.2:6546159-6546178 MS.gene031048:CDS 30.0%
!!! TATTTTGTCTGGCTTTTTCA+GGG - chr6.2:6545711-6545730 None:intergenic 30.0%
AACCTTAGGTAAGCATTCAA+GGG + chr6.2:6546492-6546511 MS.gene031048:CDS 35.0%
ACCTCAATATTGACAACTCT+CGG + chr6.2:6546634-6546653 MS.gene031048:CDS 35.0%
AGAATTCTGAACAGCTGTTT+CGG - chr6.2:6545930-6545949 None:intergenic 35.0%
AGACACAAACTCAAGATTAG+TGG + chr6.2:6545592-6545611 MS.gene031048:CDS 35.0%
CGGGATTAAAAATAGTAAGG+CGG + chr6.2:6546654-6546673 MS.gene031048:CDS 35.0%
GAAAAACGGAATCATTAGAC+CGG + chr6.2:6546090-6546109 MS.gene031048:CDS 35.0%
TCTGGCATTTCTTGCAAAAA+TGG - chr6.2:6545808-6545827 None:intergenic 35.0%
TGAATCGACCAAATGTAAGA+AGG + chr6.2:6545523-6545542 MS.gene031048:CDS 35.0%
TTCATTGCTCTTTGAACCAA+AGG - chr6.2:6546710-6546729 None:intergenic 35.0%
! ACTCTTTTCTTCACCAACAT+AGG - chr6.2:6546137-6546156 None:intergenic 35.0%
! AGTGACCTTTTCTGATGATT+GGG - chr6.2:6545567-6545586 None:intergenic 35.0%
! CTCTTTTCTTCACCAACATA+GGG - chr6.2:6546136-6546155 None:intergenic 35.0%
! TCATCAATCCTCAACGTTTT+CGG - chr6.2:6546595-6546614 None:intergenic 35.0%
!! AGATTGCATTGATTCACACA+AGG - chr6.2:6546032-6546051 None:intergenic 35.0%
!! GATTGCATTGATTCACACAA+GGG - chr6.2:6546031-6546050 None:intergenic 35.0%
!! TCTAATGATTCCGTTTTTCG+CGG - chr6.2:6546089-6546108 None:intergenic 35.0%
!!! GTATTTTGTCTGGCTTTTTC+AGG - chr6.2:6545712-6545731 None:intergenic 35.0%
AATCCTTGTGGGAAAAAAGC+AGG - chr6.2:6546346-6546365 None:intergenic 40.0%
ATGCTAAAACCCCAATAAGC+CGG - chr6.2:6546391-6546410 None:intergenic 40.0%
ATGGCACAGTCTTTACATTC+AGG + chr6.2:6545996-6546015 MS.gene031048:CDS 40.0%
ATTCTTGTTCTTCCTACGAC+CGG - chr6.2:6545876-6545895 None:intergenic 40.0%
CAACCTTAGGTAAGCATTCA+AGG + chr6.2:6546491-6546510 MS.gene031048:CDS 40.0%
CATCCTTCACTGAACTGTAA+TGG + chr6.2:6545977-6545996 MS.gene031048:CDS 40.0%
CATTTCTTGCAAAAATGGCG+AGG - chr6.2:6545803-6545822 None:intergenic 40.0%
CCTCAATATTGACAACTCTC+GGG + chr6.2:6546635-6546654 MS.gene031048:CDS 40.0%
CTTGAATGCTTACCTAAGGT+TGG - chr6.2:6546493-6546512 None:intergenic 40.0%
GCATTGAACCTTGCTGATAA+AGG + chr6.2:6546052-6546071 MS.gene031048:CDS 40.0%
TACAGTTCAGTGAAGGATGA+TGG - chr6.2:6545976-6545995 None:intergenic 40.0%
TCTCACCCAATCATCAGAAA+AGG + chr6.2:6545559-6545578 MS.gene031048:CDS 40.0%
TGATGTGTCCGAAGATTTGA+TGG - chr6.2:6546170-6546189 None:intergenic 40.0%
TGGTGTCCATGCTATTACAA+CGG - chr6.2:6545745-6545764 None:intergenic 40.0%
TTCCCTTGAATGCTTACCTA+AGG - chr6.2:6546497-6546516 None:intergenic 40.0%
! AACTTGTTCAAGAGAACTGC+TGG - chr6.2:6546218-6546237 None:intergenic 40.0%
! ACGTTGAGGATTGATGACTT+AGG + chr6.2:6546598-6546617 MS.gene031048:CDS 40.0%
! CAGTGACCTTTTCTGATGAT+TGG - chr6.2:6545568-6545587 None:intergenic 40.0%
! CTGTTTCGGGTACAGTTATT+TGG - chr6.2:6545916-6545935 None:intergenic 40.0%
! GAATTCTGAACAGCTGTTTC+GGG - chr6.2:6545929-6545948 None:intergenic 40.0%
AACGGAATCATTAGACCGGA+AGG + chr6.2:6546094-6546113 MS.gene031048:CDS 45.0%
AATAGTGCAGCCGTTAACTC+CGG + chr6.2:6546457-6546476 MS.gene031048:CDS 45.0%
ACATGAATCCGTAGACCTTC+CGG - chr6.2:6546112-6546131 None:intergenic 45.0%
ACCTACAGGCACATTTCTCA+TGG - chr6.2:6545852-6545871 None:intergenic 45.0%
ACTTGAGAGCTCCATTGAGA+TGG - chr6.2:6546313-6546332 None:intergenic 45.0%
ATCAATTAACCCCTCCACTG+AGG + chr6.2:6545619-6545638 MS.gene031048:CDS 45.0%
ATGCTATTACAACGGGGACA+CGG - chr6.2:6545737-6545756 None:intergenic 45.0%
ATTGACCTAGACATTGCTGC+TGG - chr6.2:6546772-6546791 None:intergenic 45.0%
CCCGAGAGTTGTCAATATTG+AGG - chr6.2:6546638-6546657 None:intergenic 45.0%
CGGATTCATGTACCCTATGT+TGG + chr6.2:6546121-6546140 MS.gene031048:CDS 45.0%
GAGTTAACGGCTGCACTATT+TGG - chr6.2:6546457-6546476 None:intergenic 45.0%
GCAAGAAATGCCAGAGATAC+TGG + chr6.2:6545813-6545832 MS.gene031048:CDS 45.0%
GGTGTCCATGCTATTACAAC+GGG - chr6.2:6545744-6545763 None:intergenic 45.0%
GTGTCCATGCTATTACAACG+GGG - chr6.2:6545743-6545762 None:intergenic 45.0%
TCATTAGACCGGAAGGTCTA+CGG + chr6.2:6546101-6546120 MS.gene031048:CDS 45.0%
TTACCTAAGGTTGGCGAGTT+AGG - chr6.2:6546484-6546503 None:intergenic 45.0%
TTCGTCAGAACCTGTTGAGT+CGG - chr6.2:6546539-6546558 None:intergenic 45.0%
! CAACGTTTTCGGAACCCAAA+GGG - chr6.2:6546584-6546603 None:intergenic 45.0%
! CTCCATTGAGATGGATTCCA+CGG - chr6.2:6546304-6546323 None:intergenic 45.0%
! GCTGCACTATTTGGTGAAGA+AGG - chr6.2:6546448-6546467 None:intergenic 45.0%
! GGAGGACTTTTCAAAGCCTT+TGG + chr6.2:6546691-6546710 MS.gene031048:CDS 45.0%
! GGTGGGAAGCTTTGACAATT+TGG - chr6.2:6546244-6546263 None:intergenic 45.0%
! GTGCCATTACAGTTCAGTGA+AGG - chr6.2:6545983-6546002 None:intergenic 45.0%
! TCAACGTTTTCGGAACCCAA+AGG - chr6.2:6546585-6546604 None:intergenic 45.0%
! TGTATTTTGCTCGTCCTCAG+TGG - chr6.2:6545636-6545655 None:intergenic 45.0%
! TTTGGGTTCCGAAAACGTTG+AGG + chr6.2:6546584-6546603 MS.gene031048:CDS 45.0%
!! TATTGGGGTTTTAGCATGCC+CGG + chr6.2:6546394-6546413 MS.gene031048:CDS 45.0%
AGAAATGTGCCTGTAGGTGC+CGG + chr6.2:6545854-6545873 MS.gene031048:CDS 50.0%
AGTGGCATGGCAAATCCTTG+TGG - chr6.2:6546358-6546377 None:intergenic 50.0%
ATTCCACGGCAAAAGCCAAG+GGG - chr6.2:6546290-6546309 None:intergenic 50.0%
CCAATCCAGCAGCAATGTCT+AGG + chr6.2:6546764-6546783 MS.gene031048:CDS 50.0%
CCTAGACATTGCTGCTGGAT+TGG - chr6.2:6546767-6546786 None:intergenic 50.0%
CCTTGTGGGAAAAAAGCAGG+TGG - chr6.2:6546343-6546362 None:intergenic 50.0%
CGAGTTAGGACCGGAGTTAA+CGG - chr6.2:6546470-6546489 None:intergenic 50.0%
CTAAAACCCCAATAAGCCGG+TGG - chr6.2:6546388-6546407 None:intergenic 50.0%
GATTCCACGGCAAAAGCCAA+GGG - chr6.2:6546291-6546310 None:intergenic 50.0%
GCCATGAGAAATGTGCCTGT+AGG + chr6.2:6545848-6545867 MS.gene031048:CDS 50.0%
GTGGCATGGCAAATCCTTGT+GGG - chr6.2:6546357-6546376 None:intergenic 50.0%
GTGTCCCCGTTGTAATAGCA+TGG + chr6.2:6545736-6545755 MS.gene031048:CDS 50.0%
TAAGGTTGGCGAGTTAGGAC+CGG - chr6.2:6546479-6546498 None:intergenic 50.0%
TCAGAACCTGTTGAGTCGGT+TGG - chr6.2:6546535-6546554 None:intergenic 50.0%
TCTTGCAAAAATGGCGAGGC+TGG - chr6.2:6545799-6545818 None:intergenic 50.0%
TGCCGTGGAATCCATCTCAA+TGG + chr6.2:6546299-6546318 MS.gene031048:CDS 50.0%
TGTGGGAAAAAAGCAGGTGG+TGG - chr6.2:6546340-6546359 None:intergenic 50.0%
! ATTTTGCTCGTCCTCAGTGG+AGG - chr6.2:6545633-6545652 None:intergenic 50.0%
! CTCAAACCAACCGACTCAAC+AGG + chr6.2:6546526-6546545 MS.gene031048:CDS 50.0%
! GACTCAACAGGTTCTGACGA+AGG + chr6.2:6546538-6546557 MS.gene031048:CDS 50.0%
! GGACACGGCAGTATTTTGTC+TGG - chr6.2:6545722-6545741 None:intergenic 50.0%
! TCTCAATCCGACTCGCCAAA+CGG + chr6.2:6545947-6545966 MS.gene031048:CDS 50.0%
! TTTTGCTCGTCCTCAGTGGA+GGG - chr6.2:6545632-6545651 None:intergenic 50.0%
!! CTATCCTCCACCGGCTTATT+GGG + chr6.2:6546378-6546397 MS.gene031048:CDS 50.0%
!! GAAGGATGATGGACTCCGTT+TGG - chr6.2:6545965-6545984 None:intergenic 50.0%
!! TATCCTCCACCGGCTTATTG+GGG + chr6.2:6546379-6546398 MS.gene031048:CDS 50.0%
!! TCTATCCTCCACCGGCTTAT+TGG + chr6.2:6546377-6546396 MS.gene031048:CDS 50.0%
!!! CCACCTGCTTTTTTCCCACA+AGG + chr6.2:6546340-6546359 MS.gene031048:CDS 50.0%
AAACCCCAATAAGCCGGTGG+AGG - chr6.2:6546385-6546404 None:intergenic 55.0%
ATGGACTCCGTTTGGCGAGT+CGG - chr6.2:6545957-6545976 None:intergenic 55.0%
CACATTTCTCATGGCTCCCC+CGG - chr6.2:6545843-6545862 None:intergenic 55.0%
CATGCCACTCTATCCTCCAC+CGG + chr6.2:6546369-6546388 MS.gene031048:CDS 55.0%
CCAGGGTAGTACGGAACTTG+CGG - chr6.2:6546265-6546284 None:intergenic 55.0%
GAAGAAGGTTGTGCCAGCCA+TGG - chr6.2:6546433-6546452 None:intergenic 55.0%
GCAAAACTCACCTGCCATGC+AGG + chr6.2:6546741-6546760 MS.gene031048:CDS 55.0%
GGATTCCACGGCAAAAGCCA+AGG - chr6.2:6546292-6546311 None:intergenic 55.0%
GGTAGTACGGAACTTGCGGT+GGG - chr6.2:6546261-6546280 None:intergenic 55.0%
GGTCCTAACTCGCCAACCTT+AGG + chr6.2:6546478-6546497 MS.gene031048:CDS 55.0%
TAAGCCGGTGGAGGATAGAG+TGG - chr6.2:6546376-6546395 None:intergenic 55.0%
TGCCAGAGATACTGGACTGC+CGG + chr6.2:6545821-6545840 MS.gene031048:CDS 55.0%
TGCGTGGAACAATCCATGGC+TGG + chr6.2:6546417-6546436 MS.gene031048:CDS 55.0%
TTTGCTCGTCCTCAGTGGAG+GGG - chr6.2:6545631-6545650 None:intergenic 55.0%
! CATGGATTGTTCCACGCACC+GGG - chr6.2:6546415-6546434 None:intergenic 55.0%
! CCATGGATTGTTCCACGCAC+CGG - chr6.2:6546416-6546435 None:intergenic 55.0%
AGTAAGGCGGACGCGATTCG+TGG + chr6.2:6546667-6546686 MS.gene031048:CDS 60.0%
CAGAGATACTGGACTGCCGG+GGG + chr6.2:6545824-6545843 MS.gene031048:CDS 60.0%
CCAGAGATACTGGACTGCCG+GGG + chr6.2:6545823-6545842 MS.gene031048:CDS 60.0%
CCGCAAGTTCCGTACTACCC+TGG + chr6.2:6546262-6546281 MS.gene031048:CDS 60.0%
CCGGTGCGTGGAACAATCCA+TGG + chr6.2:6546413-6546432 MS.gene031048:CDS 60.0%
CGGTGGAGGATAGAGTGGCA+TGG - chr6.2:6546371-6546390 None:intergenic 60.0%
GCCAGAGATACTGGACTGCC+GGG + chr6.2:6545822-6545841 MS.gene031048:CDS 60.0%
GGGTAGTACGGAACTTGCGG+TGG - chr6.2:6546262-6546281 None:intergenic 60.0%
GTAAGGCGGACGCGATTCGT+GGG + chr6.2:6546668-6546687 MS.gene031048:CDS 60.0%
TAAGGCGGACGCGATTCGTG+GGG + chr6.2:6546669-6546688 MS.gene031048:CDS 60.0%
TTCCTACGACCGGCACCTAC+AGG - chr6.2:6545866-6545885 None:intergenic 60.0%
!! CAAGGGGCACCAGGGTAGTA+CGG - chr6.2:6546274-6546293 None:intergenic 60.0%
!! GCAAAAGCCAAGGGGCACCA+GGG - chr6.2:6546282-6546301 None:intergenic 60.0%
!! GTTTTAGCATGCCCGGTGCG+TGG + chr6.2:6546401-6546420 MS.gene031048:CDS 60.0%
!! TGCTGCTGGATTGGCCTGCA+TGG - chr6.2:6546758-6546777 None:intergenic 60.0%
AAGGCGGACGCGATTCGTGG+GGG + chr6.2:6546670-6546689 MS.gene031048:CDS 65.0%
CCCCGGCAGTCCAGTATCTC+TGG - chr6.2:6545826-6545845 None:intergenic 65.0%
CGTACTACCCTGGTGCCCCT+TGG + chr6.2:6546272-6546291 MS.gene031048:CDS 65.0%
!! GCTGGATTGGCCTGCATGGC+AGG - chr6.2:6546754-6546773 None:intergenic 65.0%
!! GGCAAAAGCCAAGGGGCACC+AGG - chr6.2:6546283-6546302 None:intergenic 65.0%
!! GTGCCCCTTGGCTTTTGCCG+TGG + chr6.2:6546284-6546303 MS.gene031048:CDS 65.0%
!! TGCCTGTAGGTGCCGGTCGT+AGG + chr6.2:6545861-6545880 MS.gene031048:CDS 65.0%
GCGGACGCGATTCGTGGGGG+AGG + chr6.2:6546673-6546692 MS.gene031048:CDS 75.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 6545515 6546813 6545515 ID=MS.gene031048
chr6.2 mRNA 6545515 6546813 6545515 ID=MS.gene031048.t1;Parent=MS.gene031048
chr6.2 exon 6545515 6546813 6545515 ID=MS.gene031048.t1.exon1;Parent=MS.gene031048.t1
chr6.2 CDS 6545515 6546813 6545515 ID=cds.MS.gene031048.t1;Parent=MS.gene031048.t1
Gene Sequence

>MS.gene031048

ATGGAAGATGAATCGACCAAATGTAAGAAGGAAAAAGATGAAGCTCTCACCCAATCATCAGAAAAGGTCACTGATCTAGACACAAACTCAAGATTAGTGGAAGAATCAATTAACCCCTCCACTGAGGACGAGCAAAATACATTGAAAACTTCAAAGATTATGGAAGAACATACTGAGAATTCTCATGATAAGACCCTGAAAAAGCCAGACAAAATACTGCCGTGTCCCCGTTGTAATAGCATGGACACCAAATTCTGCTACTACAATAACTACAATGTTAACCAGCCTCGCCATTTTTGCAAGAAATGCCAGAGATACTGGACTGCCGGGGGAGCCATGAGAAATGTGCCTGTAGGTGCCGGTCGTAGGAAGAACAAGAATTCTGCTTCTCACTTTCGCCAAATAACTGTACCCGAAACAGCTGTTCAGAATTCTCAATCCGACTCGCCAAACGGAGTCCATCATCCTTCACTGAACTGTAATGGCACAGTCTTTACATTCAGGACTGATACACCCTTGTGTGAATCAATGCAATCTGCATTGAACCTTGCTGATAAAGGAGTTAATATTTCCGCGAAAAACGGAATCATTAGACCGGAAGGTCTACGGATTCATGTACCCTATGTTGGTGAAGAAAAGAGTGATGATCATTCCATCAAATCTTCGGACACATCAACAGCTCTGACAGAAGATGCAGCTGCCAGCAGTTCTCTTGAACAAGTTATGCCAAATTGTCAAAGCTTCCCACCGCAAGTTCCGTACTACCCTGGTGCCCCTTGGCTTTTGCCGTGGAATCCATCTCAATGGAGCTCTCAAGTACAACCACCACCTGCTTTTTTCCCACAAGGATTTGCCATGCCACTCTATCCTCCACCGGCTTATTGGGGTTTTAGCATGCCCGGTGCGTGGAACAATCCATGGCTGGCACAACCTTCTTCACCAAATAGTGCAGCCGTTAACTCCGGTCCTAACTCGCCAACCTTAGGTAAGCATTCAAGGGAAGAAAGCATGCTCAAACCAACCGACTCAACAGGTTCTGACGAAGGAAACAATAAAGAAGAAAAGTCCCTTTGGGTTCCGAAAACGTTGAGGATTGATGACTTAGGAGAAGCAGAAAAAACCTCAATATTGACAACTCTCGGGATTAAAAATAGTAAGGCGGACGCGATTCGTGGGGGAGGACTTTTCAAAGCCTTTGGTTCAAAGAGCAATGAAAAAGATAGCGTGCAAAACTCACCTGCCATGCAGGCCAATCCAGCAGCAATGTCTAGGTCAATTAGCTTTCATGAGACCTCATAA
Protein sequence

>MS.gene031048.t1

MEDESTKCKKEKDEALTQSSEKVTDLDTNSRLVEESINPSTEDEQNTLKTSKIMEEHTENSHDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGAMRNVPVGAGRRKNKNSASHFRQITVPETAVQNSQSDSPNGVHHPSLNCNGTVFTFRTDTPLCESMQSALNLADKGVNISAKNGIIRPEGLRIHVPYVGEEKSDDHSIKSSDTSTALTEDAAASSSLEQVMPNCQSFPPQVPYYPGAPWLLPWNPSQWSSQVQPPPAFFPQGFAMPLYPPPAYWGFSMPGAWNNPWLAQPSSPNSAAVNSGPNSPTLGKHSREESMLKPTDSTGSDEGNNKEEKSLWVPKTLRIDDLGEAEKTSILTTLGIKNSKADAIRGGGLFKAFGSKSNEKDSVQNSPAMQANPAAMSRSISFHETS