Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031212.t1 | XP_024634048.1 | 93.6 | 596 | 37 | 1 | 1 | 596 | 1 | 595 | 0.00E+00 | 1085.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031212.t1 | Q9SZD1 | 38.5 | 590 | 281 | 18 | 13 | 571 | 24 | 562 | 3.4e-85 | 317.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031212.t1 | A0A072V2F6 | 89.5 | 598 | 59 | 4 | 1 | 596 | 1 | 596 | 5.0e-295 | 1022.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene031212.t1 | TF | CPP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031212.t1 | MTR_3g110122 | 91.973 | 598 | 44 | 4 | 1 | 596 | 1 | 596 | 0.0 | 1096 |
MS.gene031212.t1 | MTR_6g087590 | 45.376 | 465 | 225 | 10 | 125 | 570 | 107 | 561 | 1.12e-116 | 360 |
MS.gene031212.t1 | MTR_8g103320 | 45.227 | 440 | 215 | 11 | 109 | 530 | 44 | 475 | 2.83e-111 | 342 |
MS.gene031212.t1 | MTR_1g012020 | 44.604 | 139 | 73 | 4 | 148 | 282 | 498 | 636 | 1.50e-28 | 121 |
MS.gene031212.t1 | MTR_5g006530 | 48.800 | 125 | 60 | 4 | 148 | 269 | 488 | 611 | 5.80e-27 | 116 |
MS.gene031212.t1 | MTR_5g006530 | 48.800 | 125 | 60 | 4 | 148 | 269 | 264 | 387 | 8.07e-27 | 115 |
MS.gene031212.t1 | MTR_1g103230 | 41.739 | 115 | 63 | 4 | 156 | 267 | 446 | 559 | 7.51e-13 | 72.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031212.t1 | AT4G29000 | 40.433 | 554 | 243 | 18 | 13 | 533 | 24 | 523 | 4.10e-112 | 348 |
MS.gene031212.t1 | AT2G20110 | 40.883 | 521 | 247 | 14 | 84 | 590 | 66 | 539 | 1.53e-105 | 329 |
MS.gene031212.t1 | AT2G20110 | 41.352 | 503 | 240 | 13 | 84 | 572 | 66 | 527 | 9.77e-105 | 328 |
MS.gene031212.t1 | AT2G20110 | 40.588 | 510 | 241 | 13 | 84 | 572 | 66 | 534 | 8.83e-103 | 323 |
MS.gene031212.t1 | AT5G25790 | 36.722 | 482 | 248 | 15 | 49 | 524 | 11 | 441 | 1.03e-82 | 267 |
MS.gene031212.t1 | AT5G25790 | 35.714 | 504 | 267 | 15 | 49 | 546 | 11 | 463 | 1.85e-82 | 268 |
MS.gene031212.t1 | AT5G25790 | 36.515 | 482 | 245 | 16 | 49 | 524 | 11 | 437 | 3.97e-82 | 265 |
MS.gene031212.t1 | AT3G16160 | 44.737 | 152 | 80 | 2 | 116 | 266 | 34 | 182 | 3.11e-32 | 128 |
MS.gene031212.t1 | AT3G22760 | 41.401 | 157 | 87 | 3 | 126 | 280 | 186 | 339 | 1.50e-28 | 119 |
MS.gene031212.t1 | AT3G22760 | 41.401 | 157 | 87 | 3 | 126 | 280 | 309 | 462 | 2.25e-28 | 120 |
MS.gene031212.t1 | AT4G14770 | 46.774 | 124 | 64 | 2 | 148 | 269 | 375 | 498 | 4.72e-28 | 119 |
MS.gene031212.t1 | AT4G14770 | 46.774 | 124 | 64 | 2 | 148 | 269 | 355 | 478 | 7.06e-28 | 119 |
MS.gene031212.t1 | AT4G14770 | 46.774 | 124 | 64 | 2 | 148 | 269 | 356 | 479 | 7.09e-28 | 119 |
MS.gene031212.t1 | AT3G22780 | 42.029 | 138 | 78 | 2 | 148 | 283 | 401 | 538 | 1.03e-27 | 119 |
MS.gene031212.t1 | AT3G04850 | 45.968 | 124 | 65 | 2 | 148 | 269 | 453 | 576 | 5.40e-27 | 116 |
Find 126 sgRNAs with CRISPR-Local
Find 358 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACATCAATTTAAGTGTTTC+TGG | 0.101248 | 3.4:+94989668 | None:intergenic |
GCTAAAGTACTTACAATTTA+AGG | 0.107021 | 3.4:+94991515 | None:intergenic |
TTCTCTTCTTGGGTGTTATA+TGG | 0.169921 | 3.4:+94990815 | None:intergenic |
ATTATTATTGGTAGCATTAA+AGG | 0.183098 | 3.4:-94989473 | MS.gene031212:intron |
CATTCCAATTGCCTCCTTTC+GGG | 0.215507 | 3.4:+94991321 | None:intergenic |
ATTTGTCTTTGCAGCTTCTT+TGG | 0.243681 | 3.4:+94990146 | None:intergenic |
GCAACTAATGCTGCCATTAA+TGG | 0.244194 | 3.4:-94990871 | MS.gene031212:CDS |
TCAAAATAAAGCAGGGTTAA+AGG | 0.248253 | 3.4:-94991587 | MS.gene031212:CDS |
TACTTACAATTTAAGGCATT+TGG | 0.284828 | 3.4:+94991522 | None:intergenic |
TCTCTTCTTGGGTGTTATAT+GGG | 0.286069 | 3.4:+94990816 | None:intergenic |
AAAATCACATACCTGAATTT+AGG | 0.297536 | 3.4:+94990323 | None:intergenic |
CTTGGTGAACTGATTATTAT+TGG | 0.298905 | 3.4:-94989485 | MS.gene031212:CDS |
TCATTCCAATTGCCTCCTTT+CGG | 0.299863 | 3.4:+94991320 | None:intergenic |
AAGTCCAACTGCTCCATTAA+TGG | 0.310344 | 3.4:+94990858 | None:intergenic |
TTGATATTGACATTCATAAT+AGG | 0.314713 | 3.4:-94989700 | MS.gene031212:CDS |
GTGTCTGAAATTCAATTAAT+AGG | 0.329611 | 3.4:-94991072 | MS.gene031212:CDS |
GGCTTATCCTGACCAAGTTC+AGG | 0.337443 | 3.4:-94989514 | MS.gene031212:CDS |
TCGGAAATTTGCGCGGCAAT+TGG | 0.338947 | 3.4:-94993119 | MS.gene031212:CDS |
TCCTCCGGCGCAAATGCATT+TGG | 0.349311 | 3.4:-94992990 | MS.gene031212:CDS |
AATAGAAGCTTCATATTTCT+CGG | 0.353823 | 3.4:+94989811 | None:intergenic |
CTACTAACCATAGAAACTTC+TGG | 0.357925 | 3.4:+94991241 | None:intergenic |
TTTGCATGATTCTCCGAAAC+AGG | 0.382385 | 3.4:+94989743 | None:intergenic |
ACCAAGTTCAGGGATGTTCT+TGG | 0.382968 | 3.4:-94989503 | MS.gene031212:CDS |
AACCTCTTCACCGGAAGCTT+TGG | 0.384541 | 3.4:+94992818 | None:intergenic |
AGATGTTGCCAAGCCTGTTT+CGG | 0.392240 | 3.4:-94989756 | MS.gene031212:CDS |
TTCGGTAATGGTTCTGCAAA+TGG | 0.394963 | 3.4:-94989623 | MS.gene031212:CDS |
AACACTCACAATACTTCTTA+AGG | 0.401328 | 3.4:+94991013 | None:intergenic |
TTAATAGGAAGGCACAATAA+AGG | 0.404131 | 3.4:-94991057 | MS.gene031212:CDS |
TAATTTCAAGACCTAAATTC+AGG | 0.410173 | 3.4:-94990334 | MS.gene031212:intron |
GCGTCGGTGGCGACAATGTC+AGG | 0.412454 | 3.4:+94993065 | None:intergenic |
TGTTTCCACGGCCGTCTCAC+TGG | 0.412786 | 3.4:+94992956 | None:intergenic |
GGACTTGGACCCTCCATCTC+TGG | 0.418333 | 3.4:-94990841 | MS.gene031212:CDS |
ATTAATGGAGCAGTTGGACT+TGG | 0.419842 | 3.4:-94990856 | MS.gene031212:CDS |
GCTACCTATGCAAGAACTAA+TGG | 0.420530 | 3.4:-94987797 | MS.gene031212:CDS |
TAAATTGATGTGTGATGAAC+AGG | 0.421391 | 3.4:-94989657 | MS.gene031212:CDS |
AGCCACTGGGATGGAGCAAT+TGG | 0.435821 | 3.4:+94987817 | None:intergenic |
GTACTCCACACCAAAGCTTC+CGG | 0.447922 | 3.4:-94992828 | MS.gene031212:CDS |
TACTGTGAGTGCTATGCAGC+TGG | 0.448205 | 3.4:-94991403 | MS.gene031212:CDS |
AAAGGAAGCTGACAGGGATA+AGG | 0.448296 | 3.4:+94990379 | None:intergenic |
TTCAAATTTCCAGAAATGAG+AGG | 0.459036 | 3.4:-94989857 | MS.gene031212:intron |
CATGACTGCTCAACACCAAC+AGG | 0.463692 | 3.4:-94990743 | MS.gene031212:intron |
ACCAAGAACATCCCTGAACT+TGG | 0.469962 | 3.4:+94989502 | None:intergenic |
TGATAGTGGTGCTGAAACTA+AGG | 0.471033 | 3.4:-94987864 | MS.gene031212:CDS |
CACTGCTGTTTATGCAGAGC+AGG | 0.471249 | 3.4:-94989540 | MS.gene031212:CDS |
CTGTTTATGCAGAGCAGGAA+AGG | 0.476553 | 3.4:-94989535 | MS.gene031212:CDS |
AAGGAAGCTGACAGGGATAA+GGG | 0.478405 | 3.4:+94990380 | None:intergenic |
TCACAGCCTCAAAATAAAGC+AGG | 0.479128 | 3.4:-94991595 | MS.gene031212:CDS |
GCTGCCCGAAAGGAGGCAAT+TGG | 0.479529 | 3.4:-94991325 | MS.gene031212:CDS |
GTTCTTGCATAGGTAGCCAC+TGG | 0.479534 | 3.4:+94987803 | None:intergenic |
GATAAGGGAGATGAAGCTAT+AGG | 0.479560 | 3.4:+94990395 | None:intergenic |
GAACATCCCTGAACTTGGTC+AGG | 0.480468 | 3.4:+94989507 | None:intergenic |
GATTGAAAATGCGGCATCAC+CGG | 0.492928 | 3.4:+94992890 | None:intergenic |
GGAGAAGAGCGAAACGACGC+TGG | 0.493971 | 3.4:-94993152 | MS.gene031212:CDS |
CGGAAACAAAGGAAGCTGAC+AGG | 0.494375 | 3.4:+94990372 | None:intergenic |
TGTTATATGGGTTCCAGAGA+TGG | 0.499612 | 3.4:+94990828 | None:intergenic |
TGAGGCTGTGATCTAGGGCT+AGG | 0.501431 | 3.4:+94991607 | None:intergenic |
CGACGCTGGATTTAGCTAAT+CGG | 0.509373 | 3.4:-94993138 | MS.gene031212:CDS |
AAAGGATGTCACTGCAAGAA+AGG | 0.510127 | 3.4:-94991039 | MS.gene031212:CDS |
TTGGATTTCGCCGCCGCATG+TGG | 0.510164 | 3.4:-94993100 | MS.gene031212:CDS |
CTTCCGGTTGTTCAATCCGC+AGG | 0.513069 | 3.4:+94987743 | None:intergenic |
ATCGAAACTAACTGCGGGCG+CGG | 0.513160 | 3.4:+94992866 | None:intergenic |
TCAAATTTCCAGAAATGAGA+GGG | 0.516415 | 3.4:-94989856 | MS.gene031212:intron |
CTGAAATTCAATTAATAGGA+AGG | 0.519135 | 3.4:-94991068 | MS.gene031212:CDS |
GCTTATCCTGACCAAGTTCA+GGG | 0.520596 | 3.4:-94989513 | MS.gene031212:CDS |
CAAAAGTCTTCCAACTCTGA+TGG | 0.520619 | 3.4:-94989566 | MS.gene031212:CDS |
ATGATTCTCCGAAACAGGCT+TGG | 0.524373 | 3.4:+94989748 | None:intergenic |
AAATGCATTTGCGCCGGAGG+AGG | 0.526333 | 3.4:+94992992 | None:intergenic |
GCTGCCATTAATGGAGCAGT+TGG | 0.529615 | 3.4:-94990862 | MS.gene031212:CDS |
CAGAGCAGAGGACGTTGGCA+TGG | 0.529760 | 3.4:+94990989 | None:intergenic |
AGTCACCAGTGAGACGGCCG+TGG | 0.538539 | 3.4:-94992961 | MS.gene031212:CDS |
CACCAAAGCTTCCGGTGAAG+AGG | 0.538599 | 3.4:-94992820 | MS.gene031212:CDS |
GAAGCTGCAAAGACAAATGC+AGG | 0.539292 | 3.4:-94990141 | MS.gene031212:intron |
TGTGACAGTGACTGCGGCGT+CGG | 0.541888 | 3.4:+94993049 | None:intergenic |
TGTGGTGGTGATTGTTTCCA+CGG | 0.542299 | 3.4:+94992944 | None:intergenic |
AGCGCTTGAAACCTCTTCAC+CGG | 0.544016 | 3.4:+94992809 | None:intergenic |
TTCATGTTGAAGGTCTGTGT+TGG | 0.547492 | 3.4:-94990226 | MS.gene031212:intron |
GGAAGCTTTGGTGTGGAGTA+CGG | 0.547715 | 3.4:+94992830 | None:intergenic |
TCCAAATGCATTTGCGCCGG+AGG | 0.550391 | 3.4:+94992989 | None:intergenic |
CTCTGCTGCTGCCACTGTGG+TGG | 0.557444 | 3.4:+94992929 | None:intergenic |
ACCGTCGGATTTGCCTCCTC+CGG | 0.560178 | 3.4:-94993005 | MS.gene031212:CDS |
GGAGGCAAATCCGACGGTGT+CGG | 0.562332 | 3.4:+94993010 | None:intergenic |
ATAGGCAGTGTCGGAAACAA+AGG | 0.562595 | 3.4:+94990361 | None:intergenic |
GAACAATGAGGCTGCCCGAA+AGG | 0.567258 | 3.4:-94991335 | MS.gene031212:CDS |
GAATCATCGAAACTAACTGC+GGG | 0.568372 | 3.4:+94992861 | None:intergenic |
TGCATAGGTAGCCACTGGGA+TGG | 0.569627 | 3.4:+94987808 | None:intergenic |
ATGTCCATTAGTTCTTGCAT+AGG | 0.570734 | 3.4:+94987793 | None:intergenic |
GATTTCGCCGCCGCATGTGG+AGG | 0.572850 | 3.4:-94993097 | MS.gene031212:CDS |
AAATGAGAGGGAAAGCTGCT+AGG | 0.574833 | 3.4:-94989844 | MS.gene031212:CDS |
CGGTGTCGGAGGTCGTAGAA+TGG | 0.576418 | 3.4:+94993024 | None:intergenic |
AGCAGTGTATCCATCAGAGT+TGG | 0.576661 | 3.4:+94989556 | None:intergenic |
TAGTCTAGTTCAAATCAGAC+AGG | 0.581100 | 3.4:-94990893 | MS.gene031212:CDS |
TTAAGTGTTTCTGGTGACAG+TGG | 0.589606 | 3.4:+94989677 | None:intergenic |
GGAGGCAATTGGAATGACAC+TGG | 0.589713 | 3.4:-94991314 | MS.gene031212:CDS |
GACAGTGACTGCGGCGTCGG+TGG | 0.593114 | 3.4:+94993052 | None:intergenic |
AAATCCAAATGCATTTGCGC+CGG | 0.594109 | 3.4:+94992986 | None:intergenic |
CTTCACCGGAAGCTTTGGTG+TGG | 0.594505 | 3.4:+94992823 | None:intergenic |
CAATGAGGCTGCCCGAAAGG+AGG | 0.594923 | 3.4:-94991332 | MS.gene031212:CDS |
CACAGCCTCAAAATAAAGCA+GGG | 0.602704 | 3.4:-94991594 | MS.gene031212:CDS |
GGAAACAAAGGAAGCTGACA+GGG | 0.605542 | 3.4:+94990373 | None:intergenic |
GGCAAATCCGACGGTGTCGG+AGG | 0.608094 | 3.4:+94993013 | None:intergenic |
TATATGGGTTCCAGAGATGG+AGG | 0.609649 | 3.4:+94990831 | None:intergenic |
GCAGCTGGGATCTATTGTGA+TGG | 0.610068 | 3.4:-94991388 | MS.gene031212:CDS |
GAGAACGTCACAGTCTCCGC+CGG | 0.610187 | 3.4:-94992909 | MS.gene031212:CDS |
GGGCGCGGTGATTGAAAATG+CGG | 0.613912 | 3.4:+94992881 | None:intergenic |
TCTTTCGTTGAGGTTGCCTG+CGG | 0.618808 | 3.4:-94987759 | MS.gene031212:CDS |
ACTGTGAGTGCTATGCAGCT+GGG | 0.620605 | 3.4:-94991402 | MS.gene031212:CDS |
TGATGTGTGATGAACAGGAT+GGG | 0.620967 | 3.4:-94989652 | MS.gene031212:CDS |
ATACTACTGATCTTTCGTTG+AGG | 0.630168 | 3.4:-94987769 | MS.gene031212:CDS |
TTCTTGCATAGGTAGCCACT+GGG | 0.635007 | 3.4:+94987804 | None:intergenic |
TCATAATAATCTGAACAATG+AGG | 0.638704 | 3.4:-94991347 | MS.gene031212:CDS |
TGAAAATGCGGCATCACCGG+CGG | 0.641386 | 3.4:+94992893 | None:intergenic |
GGCGACAATGTCAGGTACGA+CGG | 0.643457 | 3.4:+94993073 | None:intergenic |
GCCGGAGGAGGCAAATCCGA+CGG | 0.645977 | 3.4:+94993004 | None:intergenic |
TCACTCACAGATCAAACTGT+CGG | 0.650466 | 3.4:-94990766 | MS.gene031212:CDS |
ATATGGGTTCCAGAGATGGA+GGG | 0.670217 | 3.4:+94990832 | None:intergenic |
TCTACGACCTCCGACACCGT+CGG | 0.672076 | 3.4:-94993020 | MS.gene031212:CDS |
TTGATGTGTGATGAACAGGA+TGG | 0.672796 | 3.4:-94989653 | MS.gene031212:CDS |
GTTCTCTGCTGCTGCCACTG+TGG | 0.675511 | 3.4:+94992926 | None:intergenic |
TAGCTAATCGGAAATTTGCG+CGG | 0.681451 | 3.4:-94993126 | MS.gene031212:CDS |
CGACGGACCTCCACATGCGG+CGG | 0.682146 | 3.4:+94993090 | None:intergenic |
GTACGACGGACCTCCACATG+CGG | 0.684282 | 3.4:+94993087 | None:intergenic |
TGCCAATTGCTCCATCCCAG+TGG | 0.687073 | 3.4:-94987819 | MS.gene031212:CDS |
GATAGTGGTGCTGAAACTAA+GGG | 0.691174 | 3.4:-94987863 | MS.gene031212:CDS |
TGAATCATCGAAACTAACTG+CGG | 0.719757 | 3.4:+94992860 | None:intergenic |
ATGGTTTGTGACAGTGACTG+CGG | 0.730603 | 3.4:+94993043 | None:intergenic |
GGAAACAATCACCACCACAG+TGG | 0.761756 | 3.4:-94992940 | MS.gene031212:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATGAATATAAAAAAAAAC+CGG | - | chr3.4:94990647-94990666 | MS.gene031212:intron | 10.0% |
!! | TAAAAGATATTAATTACAAT+CGG | + | chr3.4:94990462-94990481 | None:intergenic | 10.0% |
!! | TTATAAAAACTAATAAGATT+TGG | + | chr3.4:94989077-94989096 | None:intergenic | 10.0% |
!!! | ATCTTATTAGTTTTTATAAA+AGG | - | chr3.4:94989078-94989097 | MS.gene031212:intron | 10.0% |
!!! | CTCTTTAAAATTTATAATTT+AGG | + | chr3.4:94992459-94992478 | None:intergenic | 10.0% |
!! | GACGATTAAATTAATAAAAA+TGG | - | chr3.4:94992623-94992642 | MS.gene031212:intron | 15.0% |
!! | TATTAATTTAATCGTCATTA+AGG | + | chr3.4:94992619-94992638 | None:intergenic | 15.0% |
!!! | AAAAAATTAAAGCTACTTTT+AGG | + | chr3.4:94992827-94992846 | None:intergenic | 15.0% |
!!! | AAAAATTAAAGCTACTTTTA+GGG | + | chr3.4:94992826-94992845 | None:intergenic | 15.0% |
!!! | AATGAATTATTGACTTAAAT+TGG | + | chr3.4:94988893-94988912 | None:intergenic | 15.0% |
!!! | AATGATCAGTATATTTTTAT+TGG | + | chr3.4:94989126-94989145 | None:intergenic | 15.0% |
!!! | ATATTGATAGCTAAATTAAT+AGG | + | chr3.4:94990416-94990435 | None:intergenic | 15.0% |
!!! | ATTTTAGTATTAGAAACATA+AGG | - | chr3.4:94988709-94988728 | MS.gene031212:intron | 15.0% |
!!! | TATTGATAGCTAAATTAATA+GGG | + | chr3.4:94990415-94990434 | None:intergenic | 15.0% |
!!! | TGTTGCATTTTATTTATTTT+TGG | - | chr3.4:94988209-94988228 | MS.gene031212:intron | 15.0% |
!! | AAATCAATGTGAAACTAATA+AGG | - | chr3.4:94990293-94990312 | MS.gene031212:intron | 20.0% |
!! | ACATGAAATATTGTTAATTC+CGG | + | chr3.4:94990669-94990688 | None:intergenic | 20.0% |
!! | ATAGATTTCTTGCTTTATAT+CGG | - | chr3.4:94991655-94991674 | MS.gene031212:intron | 20.0% |
!! | GAAAAATACTTGATTCAAAT+GGG | - | chr3.4:94991595-94991614 | MS.gene031212:CDS | 20.0% |
!! | TATAGTATCAATCAAACATA+TGG | + | chr3.4:94992780-94992799 | None:intergenic | 20.0% |
!! | TCAAAAACAAAGCAAAAAAA+TGG | + | chr3.4:94992301-94992320 | None:intergenic | 20.0% |
!! | TGAAAAATACTTGATTCAAA+TGG | - | chr3.4:94991594-94991613 | MS.gene031212:CDS | 20.0% |
!! | TGAGGAAATAAAAAAAATTC+AGG | + | chr3.4:94992745-94992764 | None:intergenic | 20.0% |
!! | TTAACAATATTTCATGTTGA+AGG | - | chr3.4:94990672-94990691 | MS.gene031212:intron | 20.0% |
!! | TTCTTAATATAGAAGTTTGA+TGG | + | chr3.4:94992908-94992927 | None:intergenic | 20.0% |
!! | TTGATATTGACATTCATAAT+AGG | - | chr3.4:94991208-94991227 | MS.gene031212:intron | 20.0% |
!!! | AGGTCTTGAAATTATTTTAT+AGG | + | chr3.4:94990568-94990587 | None:intergenic | 20.0% |
!!! | ATATTTTTATTGGCAAGTTT+AGG | + | chr3.4:94989116-94989135 | None:intergenic | 20.0% |
!!! | ATTATTATTGGTAGCATTAA+AGG | - | chr3.4:94991435-94991454 | MS.gene031212:intron | 20.0% |
!!! | CAAAGTTCTATTTTTAAACA+TGG | + | chr3.4:94988949-94988968 | None:intergenic | 20.0% |
!!! | CTGTCCATTTATATTTTATA+CGG | - | chr3.4:94989150-94989169 | MS.gene031212:intron | 20.0% |
!!! | GGTGTTTTTTTTTTTTTTTG+TGG | + | chr3.4:94988350-94988369 | None:intergenic | 20.0% |
!!! | GTGATTTTTTTTCAATCATT+AGG | - | chr3.4:94990600-94990619 | MS.gene031212:intron | 20.0% |
!!! | TTGTTAATGATTGCATTTTT+GGG | - | chr3.4:94989010-94989029 | MS.gene031212:intron | 20.0% |
!!! | TTTGTTAATGATTGCATTTT+TGG | - | chr3.4:94989009-94989028 | MS.gene031212:intron | 20.0% |
!!! | TTTTGATATCGATAATTTTG+AGG | + | chr3.4:94992113-94992132 | None:intergenic | 20.0% |
! | AAAACAATTACAATGTCAGT+CGG | + | chr3.4:94991032-94991051 | None:intergenic | 25.0% |
! | AAAATCACATACCTGAATTT+AGG | + | chr3.4:94990588-94990607 | None:intergenic | 25.0% |
! | AAACTTAACATCCTAAAAAG+AGG | + | chr3.4:94992326-94992345 | None:intergenic | 25.0% |
! | AAAGCAAGAAATCTATAGAT+GGG | + | chr3.4:94991651-94991670 | None:intergenic | 25.0% |
! | AAATAAAATGCAACACATTC+AGG | + | chr3.4:94988204-94988223 | None:intergenic | 25.0% |
! | AATAGAAGCTTCATATTTCT+CGG | + | chr3.4:94991100-94991119 | None:intergenic | 25.0% |
! | ATAGAAGTTTGATGGAATAA+AGG | + | chr3.4:94992900-94992919 | None:intergenic | 25.0% |
! | ATCAAATGTGTGAAAAAGTA+GGG | + | chr3.4:94991001-94991020 | None:intergenic | 25.0% |
! | ATCAGAAAACACTAGAATAT+AGG | + | chr3.4:94992666-94992685 | None:intergenic | 25.0% |
! | ATGATAAGAATGTTAGTGTA+TGG | - | chr3.4:94988481-94988500 | MS.gene031212:intron | 25.0% |
! | CTGAAATTCAATTAATAGGA+AGG | - | chr3.4:94989840-94989859 | MS.gene031212:CDS | 25.0% |
! | GTTTGTTCAAGACATTTAAA+TGG | + | chr3.4:94989806-94989825 | None:intergenic | 25.0% |
! | TAAAGCAAGAAATCTATAGA+TGG | + | chr3.4:94991652-94991671 | None:intergenic | 25.0% |
! | TAATTTCAAGACCTAAATTC+AGG | - | chr3.4:94990574-94990593 | MS.gene031212:intron | 25.0% |
! | TATAAATTTGCCACTAAACT+AGG | - | chr3.4:94989045-94989064 | MS.gene031212:intron | 25.0% |
! | TATTAGACAAAAAAGAGCTT+AGG | - | chr3.4:94992166-94992185 | MS.gene031212:intron | 25.0% |
! | TCATAATAATCTGAACAATG+AGG | - | chr3.4:94989561-94989580 | MS.gene031212:CDS | 25.0% |
! | TCTTTACATTAGTACTTATG+TGG | + | chr3.4:94988841-94988860 | None:intergenic | 25.0% |
! | TGTATGAAAAACTTTCATCA+AGG | - | chr3.4:94989421-94989440 | MS.gene031212:intron | 25.0% |
! | TTAAATATGTGATGTGATTG+AGG | - | chr3.4:94992399-94992418 | MS.gene031212:intron | 25.0% |
! | TTATCGATATCAAAACCTTT+AGG | - | chr3.4:94992118-94992137 | MS.gene031212:intron | 25.0% |
! | TTATTTAACATCAGTAACCT+GGG | - | chr3.4:94992845-94992864 | MS.gene031212:CDS | 25.0% |
! | TTTATTTAACATCAGTAACC+TGG | - | chr3.4:94992844-94992863 | MS.gene031212:CDS | 25.0% |
!! | AATTTGATGCATCTATTTTG+TGG | - | chr3.4:94990834-94990853 | MS.gene031212:CDS | 25.0% |
!! | AGATAAAACAGTCTTTTTGA+AGG | + | chr3.4:94989179-94989198 | None:intergenic | 25.0% |
!! | ATTGTTATAAAGAAAGTGCA+CGG | + | chr3.4:94989463-94989482 | None:intergenic | 25.0% |
!! | CAAATGGGTTTATATTAAAG+AGG | - | chr3.4:94991610-94991629 | MS.gene031212:CDS | 25.0% |
!! | CATAATTTAGAATGCAGAAT+TGG | - | chr3.4:94988662-94988681 | MS.gene031212:intron | 25.0% |
!! | GATAAAACAGTCTTTTTGAA+GGG | + | chr3.4:94989178-94989197 | None:intergenic | 25.0% |
!! | GCTAAAGTACTTACAATTTA+AGG | + | chr3.4:94989396-94989415 | None:intergenic | 25.0% |
!! | GTGTCTGAAATTCAATTAAT+AGG | - | chr3.4:94989836-94989855 | MS.gene031212:CDS | 25.0% |
!! | TACTTACAATTTAAGGCATT+TGG | + | chr3.4:94989389-94989408 | None:intergenic | 25.0% |
!!! | AACTAAGAAGTTGATAAATG+CGG | + | chr3.4:94990352-94990371 | None:intergenic | 25.0% |
!!! | AATTATTTTATAGGCAGTGT+CGG | + | chr3.4:94990559-94990578 | None:intergenic | 25.0% |
!!! | AGAACTTTTAAAGATATGGA+TGG | - | chr3.4:94988815-94988834 | MS.gene031212:intron | 25.0% |
!!! | ATAAAACAGTCTTTTTGAAG+GGG | + | chr3.4:94989177-94989196 | None:intergenic | 25.0% |
!!! | GATCTTTTTTATGATAGAGA+GGG | + | chr3.4:94992088-94992107 | None:intergenic | 25.0% |
!!! | TCTTTTATTTTTTCCCAGAA+TGG | - | chr3.4:94992710-94992729 | MS.gene031212:intron | 25.0% |
!!! | TGATCTTTTTTATGATAGAG+AGG | + | chr3.4:94992089-94992108 | None:intergenic | 25.0% |
!!! | TTGGAGAACTTTTAAAGATA+TGG | - | chr3.4:94988811-94988830 | MS.gene031212:intron | 25.0% |
!!! | TTTGCAATTTTGACATTGTT+GGG | - | chr3.4:94991487-94991506 | MS.gene031212:intron | 25.0% |
AAATTAATAGGGAAGTAGCA+AGG | + | chr3.4:94990404-94990423 | None:intergenic | 30.0% | |
AACACACTTAAAGAATACGA+AGG | + | chr3.4:94992587-94992606 | None:intergenic | 30.0% | |
AACACTCACAATACTTCTTA+AGG | + | chr3.4:94989898-94989917 | None:intergenic | 30.0% | |
AATGCAGAATTGGATGTATT+AGG | - | chr3.4:94988672-94988691 | MS.gene031212:intron | 30.0% | |
ATACAATGTATTGAGTGTGT+TGG | + | chr3.4:94992259-94992278 | None:intergenic | 30.0% | |
ATGCAATCATTAACAAACCT+CGG | + | chr3.4:94989006-94989025 | None:intergenic | 30.0% | |
ATGCAGAATTGGATGTATTA+GGG | - | chr3.4:94988673-94988692 | MS.gene031212:intron | 30.0% | |
ATGTATTAGGGATGTATGTT+TGG | - | chr3.4:94988685-94988704 | MS.gene031212:intron | 30.0% | |
ATTATAAACCCATACACAAG+TGG | - | chr3.4:94988255-94988274 | MS.gene031212:intron | 30.0% | |
CAACAATGTCAAAATTGCAA+AGG | + | chr3.4:94991488-94991507 | None:intergenic | 30.0% | |
CACATCAATTTAAGTGTTTC+TGG | + | chr3.4:94991243-94991262 | None:intergenic | 30.0% | |
CCAAACATAGTGAATTTGAA+TGG | + | chr3.4:94990268-94990287 | None:intergenic | 30.0% | |
CCATTCAAATTCACTATGTT+TGG | - | chr3.4:94990265-94990284 | MS.gene031212:intron | 30.0% | |
CTAATATAGAAAGATGTTCC+TGG | + | chr3.4:94992152-94992171 | None:intergenic | 30.0% | |
CTTGGTGAACTGATTATTAT+TGG | - | chr3.4:94991423-94991442 | MS.gene031212:intron | 30.0% | |
GAAGAAAATGGTGATAAGTA+TGG | - | chr3.4:94991989-94992008 | MS.gene031212:intron | 30.0% | |
GACAATGCATAATATATGCA+AGG | - | chr3.4:94988302-94988321 | MS.gene031212:intron | 30.0% | |
GAGAAAACACCTAAAAACAA+TGG | - | chr3.4:94993021-94993040 | MS.gene031212:CDS | 30.0% | |
GATCAAATGTGTGAAAAAGT+AGG | + | chr3.4:94991002-94991021 | None:intergenic | 30.0% | |
GCTTCTTTGCATTATTGATA+CGG | - | chr3.4:94990189-94990208 | MS.gene031212:CDS | 30.0% | |
GGGACCGTATAAAATATAAA+TGG | + | chr3.4:94989157-94989176 | None:intergenic | 30.0% | |
TAAATGTCTTGAACAAACTC+AGG | - | chr3.4:94989808-94989827 | MS.gene031212:CDS | 30.0% | |
TAAATTGATGTGTGATGAAC+AGG | - | chr3.4:94991251-94991270 | MS.gene031212:CDS | 30.0% | |
TACAATGTATTGAGTGTGTT+GGG | + | chr3.4:94992258-94992277 | None:intergenic | 30.0% | |
TAGCTTCTATTTGAAGACAA+GGG | - | chr3.4:94988746-94988765 | MS.gene031212:intron | 30.0% | |
TAGTTACTCTTTCTGTTGTA+GGG | - | chr3.4:94990239-94990258 | MS.gene031212:intron | 30.0% | |
TCAAAATAAAGCAGGGTTAA+AGG | - | chr3.4:94989321-94989340 | MS.gene031212:intron | 30.0% | |
TCAAATGTGTGAAAAAGTAG+GGG | + | chr3.4:94991000-94991019 | None:intergenic | 30.0% | |
TCAAATTTCCAGAAATGAGA+GGG | - | chr3.4:94991052-94991071 | MS.gene031212:CDS | 30.0% | |
TCCTGTCTTAAATATACATG+TGG | - | chr3.4:94991530-94991549 | MS.gene031212:CDS | 30.0% | |
TGAAATTAAGAACGTCAAGT+TGG | - | chr3.4:94991866-94991885 | MS.gene031212:intron | 30.0% | |
TTAATCGTCATTAAGGAGTA+AGG | + | chr3.4:94992612-94992631 | None:intergenic | 30.0% | |
TTAGCTTCTATTTGAAGACA+AGG | - | chr3.4:94988745-94988764 | MS.gene031212:intron | 30.0% | |
TTAGTTACTCTTTCTGTTGT+AGG | - | chr3.4:94990238-94990257 | MS.gene031212:intron | 30.0% | |
TTCAAATTTCCAGAAATGAG+AGG | - | chr3.4:94991051-94991070 | MS.gene031212:CDS | 30.0% | |
TTTCCACAACTGAAAAATCA+AGG | - | chr3.4:94992358-94992377 | MS.gene031212:intron | 30.0% | |
! | AAAATCCAGGAAAGTTTTTC+TGG | - | chr3.4:94990115-94990134 | MS.gene031212:intron | 30.0% |
! | ACACTCTAAAGAAGCAAAAA+CGG | - | chr3.4:94989347-94989366 | MS.gene031212:intron | 30.0% |
! | ACCACATGTATATTTAAGAC+AGG | + | chr3.4:94991534-94991553 | None:intergenic | 30.0% |
! | ATTGACTGCAAGAATTTTGA+AGG | - | chr3.4:94989956-94989975 | MS.gene031212:intron | 30.0% |
! | ATTTACAATTTTCAGAGCAG+AGG | + | chr3.4:94989934-94989953 | None:intergenic | 30.0% |
! | TAACAATTTCGGCATTTTGA+CGG | - | chr3.4:94988420-94988439 | MS.gene031212:intron | 30.0% |
! | TATTGGTAGCATTAAAGGTT+AGG | - | chr3.4:94991440-94991459 | MS.gene031212:intron | 30.0% |
! | TTAATAGGAAGGCACAATAA+AGG | - | chr3.4:94989851-94989870 | MS.gene031212:intron | 30.0% |
! | TTTCCAAATTTTATGCTGCT+AGG | - | chr3.4:94990894-94990913 | MS.gene031212:CDS | 30.0% |
!! | ACTAAGAAGTTGATAAATGC+GGG | + | chr3.4:94990351-94990370 | None:intergenic | 30.0% |
!! | CGCTATCTTGAATTTTAATC+AGG | - | chr3.4:94990482-94990501 | MS.gene031212:intron | 30.0% |
!! | CTTTGCAATTTTGACATTGT+TGG | - | chr3.4:94991486-94991505 | MS.gene031212:intron | 30.0% |
!! | GGTGCTGTTAATAACTATTA+TGG | - | chr3.4:94989749-94989768 | MS.gene031212:CDS | 30.0% |
!! | TACTAATGTAAAGAGCATCA+GGG | - | chr3.4:94988847-94988866 | MS.gene031212:intron | 30.0% |
!! | TTGCAATTTTGACATTGTTG+GGG | - | chr3.4:94991488-94991507 | MS.gene031212:intron | 30.0% |
!! | TTTTTCAATCATTAGGTGAG+CGG | - | chr3.4:94990607-94990626 | MS.gene031212:intron | 30.0% |
!!! | ATAGAAACTTCTGGTTTTTG+CGG | + | chr3.4:94989661-94989680 | None:intergenic | 30.0% |
!!! | ATTTTTGGTCTGAAAGCATT+TGG | + | chr3.4:94989628-94989647 | None:intergenic | 30.0% |
!!! | CTGATATTTTAGCTTACTTG+TGG | - | chr3.4:94989778-94989797 | MS.gene031212:CDS | 30.0% |
!!! | TGTTTTTGAGACCTCTTTTT+AGG | - | chr3.4:94992312-94992331 | MS.gene031212:intron | 30.0% |
!!! | TTAGTTCTGTTTTAATCCCT+TGG | - | chr3.4:94990366-94990385 | MS.gene031212:CDS | 30.0% |
!!! | TTTAACCCTGCTTTATTTTG+AGG | + | chr3.4:94989322-94989341 | None:intergenic | 30.0% |
!!! | TTTTTTTTTTGTGGTGTTCG+AGG | + | chr3.4:94988341-94988360 | None:intergenic | 30.0% |
AAAAAGATTCTTGGCTCATG+AGG | + | chr3.4:94991713-94991732 | None:intergenic | 35.0% | |
AAAACACCATACACAAGTGA+AGG | - | chr3.4:94988362-94988381 | MS.gene031212:intron | 35.0% | |
AAGCGTAATGCATCATAAAG+AGG | + | chr3.4:94991796-94991815 | None:intergenic | 35.0% | |
ACGCCAACTATAAATACATG+AGG | + | chr3.4:94989706-94989725 | None:intergenic | 35.0% | |
AGAAATCTATAGATGGGTCA+CGG | + | chr3.4:94991645-94991664 | None:intergenic | 35.0% | |
ATACTACTGATCTTTCGTTG+AGG | - | chr3.4:94993139-94993158 | MS.gene031212:CDS | 35.0% | |
ATATGGCTAAAGATGAACTG+AGG | + | chr3.4:94992763-94992782 | None:intergenic | 35.0% | |
ATGTGAGTGAGACAAAAAGA+TGG | + | chr3.4:94991687-94991706 | None:intergenic | 35.0% | |
ATTTGCCAGAAAAACTTTCC+TGG | + | chr3.4:94990123-94990142 | None:intergenic | 35.0% | |
ATTTGTCTTTGCAGCTTCTT+TGG | + | chr3.4:94990765-94990784 | None:intergenic | 35.0% | |
CATTATTGATACGGTTTCGT+TGG | - | chr3.4:94990198-94990217 | MS.gene031212:CDS | 35.0% | |
CCTAAAAACAATGGTGATAG+TGG | - | chr3.4:94993030-94993049 | MS.gene031212:CDS | 35.0% | |
CCTAGGTAAAAGACTGTAAA+TGG | - | chr3.4:94992060-94992079 | MS.gene031212:intron | 35.0% | |
CGCCAACTATAAATACATGA+GGG | + | chr3.4:94989705-94989724 | None:intergenic | 35.0% | |
CTACTAACCATAGAAACTTC+TGG | + | chr3.4:94989670-94989689 | None:intergenic | 35.0% | |
CTCCCTCATGTATTTATAGT+TGG | - | chr3.4:94989700-94989719 | MS.gene031212:CDS | 35.0% | |
GCAAAAACCAGAAGTTTCTA+TGG | - | chr3.4:94989660-94989679 | MS.gene031212:CDS | 35.0% | |
GTCAAAATGCCGAAATTGTT+AGG | + | chr3.4:94988421-94988440 | None:intergenic | 35.0% | |
GTTGTTCGACCTAACAATTT+CGG | - | chr3.4:94988409-94988428 | MS.gene031212:intron | 35.0% | |
TAATTAACCACACGTTGTGT+TGG | - | chr3.4:94988556-94988575 | MS.gene031212:intron | 35.0% | |
TAGAAACATAAGGCTTATGC+TGG | - | chr3.4:94988719-94988738 | MS.gene031212:intron | 35.0% | |
TCACCATGCAAAAAGATTCT+TGG | + | chr3.4:94991722-94991741 | None:intergenic | 35.0% | |
TCTGAATCAAGAAGCAATTC+TGG | - | chr3.4:94991958-94991977 | MS.gene031212:intron | 35.0% | |
TGAATCATCGAAACTAACTG+CGG | + | chr3.4:94988051-94988070 | None:intergenic | 35.0% | |
TGCATCAGTGAGCTAAAATT+TGG | - | chr3.4:94989728-94989747 | MS.gene031212:CDS | 35.0% | |
TGTCCTAGCAGCATAAAATT+TGG | + | chr3.4:94990900-94990919 | None:intergenic | 35.0% | |
TTAAATGCAACACAATCCAC+AGG | + | chr3.4:94988457-94988476 | None:intergenic | 35.0% | |
TTCCTGGATAACTATCCTAA+AGG | + | chr3.4:94992136-94992155 | None:intergenic | 35.0% | |
! | AAGGAAATTGATGGTTCCAA+GGG | + | chr3.4:94990385-94990404 | None:intergenic | 35.0% |
! | AATCTTTTTGCATGGTGAGA+TGG | - | chr3.4:94991724-94991743 | MS.gene031212:intron | 35.0% |
! | ATCTTTTTGCATGGTGAGAT+GGG | - | chr3.4:94991725-94991744 | MS.gene031212:intron | 35.0% |
! | ATGTCCATTAGTTCTTGCAT+AGG | + | chr3.4:94993118-94993137 | None:intergenic | 35.0% |
! | CCATTTACAGTCTTTTACCT+AGG | + | chr3.4:94992063-94992082 | None:intergenic | 35.0% |
! | CTTATCACCATTTTCTTCCT+TGG | + | chr3.4:94991987-94992006 | None:intergenic | 35.0% |
! | GATTTTTCACATTCTGTGTC+TGG | + | chr3.4:94990718-94990737 | None:intergenic | 35.0% |
! | TAGCTAATTTTGCAACTGCA+AGG | - | chr3.4:94989482-94989501 | MS.gene031212:CDS | 35.0% |
! | TAGTCTAGTTCAAATCAGAC+AGG | - | chr3.4:94990015-94990034 | MS.gene031212:intron | 35.0% |
! | TCCTGGATTTTTCTCTTCTT+GGG | + | chr3.4:94990106-94990125 | None:intergenic | 35.0% |
! | TCTCTTCTTGGGTGTTATAT+GGG | + | chr3.4:94990095-94990114 | None:intergenic | 35.0% |
! | TTCCTGGATTTTTCTCTTCT+TGG | + | chr3.4:94990107-94990126 | None:intergenic | 35.0% |
! | TTCTCTTCTTGGGTGTTATA+TGG | + | chr3.4:94990096-94990115 | None:intergenic | 35.0% |
! | TTGATGCATCTATTTTGTGG+TGG | - | chr3.4:94990837-94990856 | MS.gene031212:CDS | 35.0% |
!! | AACCTTTAGGATAGTTATCC+AGG | - | chr3.4:94992131-94992150 | MS.gene031212:intron | 35.0% |
!! | ATTTTGAAGGAAGTGACGAA+TGG | - | chr3.4:94989969-94989988 | MS.gene031212:intron | 35.0% |
!! | CCACTATCACCATTGTTTTT+AGG | + | chr3.4:94993033-94993052 | None:intergenic | 35.0% |
!! | CTAAGAAGTTGATAAATGCG+GGG | + | chr3.4:94990350-94990369 | None:intergenic | 35.0% |
!! | CTTCCTTGATTTTTCAGTTG+TGG | + | chr3.4:94992364-94992383 | None:intergenic | 35.0% |
!! | GTACTAATGTAAAGAGCATC+AGG | - | chr3.4:94988846-94988865 | MS.gene031212:intron | 35.0% |
!! | TGCAATTTTGACATTGTTGG+GGG | - | chr3.4:94991489-94991508 | MS.gene031212:intron | 35.0% |
!! | TTTTTCAGCTATGTCAAACG+AGG | + | chr3.4:94991581-94991600 | None:intergenic | 35.0% |
!!! | TATTTTGAGGCTGTGATCTA+GGG | + | chr3.4:94989309-94989328 | None:intergenic | 35.0% |
!!! | TTATTTTGAGGCTGTGATCT+AGG | + | chr3.4:94989310-94989329 | None:intergenic | 35.0% |
!!! | TTATTTTTTCCCAGAATGGC+TGG | - | chr3.4:94992714-94992733 | MS.gene031212:intron | 35.0% |
AAAGGATGTCACTGCAAGAA+AGG | - | chr3.4:94989869-94989888 | MS.gene031212:intron | 40.0% | |
AAATCCAAATGCATTTGCGC+CGG | + | chr3.4:94987925-94987944 | None:intergenic | 40.0% | |
AAGTCCAACTGCTCCATTAA+TGG | + | chr3.4:94990053-94990072 | None:intergenic | 40.0% | |
ACCCAAGAAGAGAAAAATCC+AGG | - | chr3.4:94990102-94990121 | MS.gene031212:intron | 40.0% | |
AGATTGCAGAAGCAGAAAGT+GGG | - | chr3.4:94992501-94992520 | MS.gene031212:intron | 40.0% | |
ATCATAAAGAGGCCAGGTAT+GGG | + | chr3.4:94991785-94991804 | None:intergenic | 40.0% | |
ATGTCTTGAACAAACTCAGG+AGG | - | chr3.4:94989811-94989830 | MS.gene031212:CDS | 40.0% | |
ATGTGTGAAAAAGTAGGGGA+CGG | + | chr3.4:94990996-94991015 | None:intergenic | 40.0% | |
ATTAATGGAGCAGTTGGACT+TGG | - | chr3.4:94990052-94990071 | MS.gene031212:intron | 40.0% | |
CAAAAGTCTTCCAACTCTGA+TGG | - | chr3.4:94991342-94991361 | MS.gene031212:CDS | 40.0% | |
CACAGCCTCAAAATAAAGCA+GGG | - | chr3.4:94989314-94989333 | MS.gene031212:intron | 40.0% | |
CACTGCTATGGGTGAATATA+TGG | + | chr3.4:94991910-94991929 | None:intergenic | 40.0% | |
GAAATCTATAGATGGGTCAC+GGG | + | chr3.4:94991644-94991663 | None:intergenic | 40.0% | |
GAATCATCGAAACTAACTGC+GGG | + | chr3.4:94988050-94988069 | None:intergenic | 40.0% | |
GATAAGGGAGATGAAGCTAT+AGG | + | chr3.4:94990516-94990535 | None:intergenic | 40.0% | |
GATGATGCTACAAAGTAAGC+TGG | + | chr3.4:94991836-94991855 | None:intergenic | 40.0% | |
GCAACTAATGCTGCCATTAA+TGG | - | chr3.4:94990037-94990056 | MS.gene031212:intron | 40.0% | |
GCTACCTATGCAAGAACTAA+TGG | - | chr3.4:94993111-94993130 | MS.gene031212:CDS | 40.0% | |
GGAAGTAGCAAGGAAATTGA+TGG | + | chr3.4:94990394-94990413 | None:intergenic | 40.0% | |
GTTGGGGGAAAAATTAACTC+AGG | - | chr3.4:94991504-94991523 | MS.gene031212:intron | 40.0% | |
TAATGCATCATAAAGAGGCC+AGG | + | chr3.4:94991791-94991810 | None:intergenic | 40.0% | |
TAGCTAATCGGAAATTTGCG+CGG | - | chr3.4:94987782-94987801 | MS.gene031212:CDS | 40.0% | |
TCACAGCCTCAAAATAAAGC+AGG | - | chr3.4:94989313-94989332 | MS.gene031212:intron | 40.0% | |
TCACTCACAGATCAAACTGT+CGG | - | chr3.4:94990142-94990161 | MS.gene031212:CDS | 40.0% | |
TCATTCCAATTGCCTCCTTT+CGG | + | chr3.4:94989591-94989610 | None:intergenic | 40.0% | |
TCTGTTCTGTCTCTCTCTTT+GGG | - | chr3.4:94992542-94992561 | MS.gene031212:intron | 40.0% | |
TGATGTGTGATGAACAGGAT+GGG | - | chr3.4:94991256-94991275 | MS.gene031212:CDS | 40.0% | |
TGTTATATGGGTTCCAGAGA+TGG | + | chr3.4:94990083-94990102 | None:intergenic | 40.0% | |
TGTTGATGCATATCGAACAC+CGG | - | chr3.4:94988579-94988598 | MS.gene031212:intron | 40.0% | |
TTCATGTTGAAGGTCTGTGT+TGG | - | chr3.4:94990682-94990701 | MS.gene031212:intron | 40.0% | |
TTGATGTGTGATGAACAGGA+TGG | - | chr3.4:94991255-94991274 | MS.gene031212:CDS | 40.0% | |
TTTGCATGATTCTCCGAAAC+AGG | + | chr3.4:94991168-94991187 | None:intergenic | 40.0% | |
! | ATTTTCAGTCACCAGTGAGA+CGG | - | chr3.4:94987941-94987960 | MS.gene031212:intron | 40.0% |
! | CAAGGAAATTGATGGTTCCA+AGG | + | chr3.4:94990386-94990405 | None:intergenic | 40.0% |
! | CAAGGAAGCGCATTGTTATT+TGG | - | chr3.4:94992376-94992395 | MS.gene031212:intron | 40.0% |
! | GAACAGGATGGGATGTTTTT+CGG | - | chr3.4:94991267-94991286 | MS.gene031212:CDS | 40.0% |
! | GAGCCAAGAATCTTTTTGCA+TGG | - | chr3.4:94991716-94991735 | MS.gene031212:intron | 40.0% |
! | GATAGTGGTGCTGAAACTAA+GGG | - | chr3.4:94993045-94993064 | MS.gene031212:CDS | 40.0% |
! | TGTGCGAAAAGCATGATTCT+TGG | - | chr3.4:94988792-94988811 | MS.gene031212:intron | 40.0% |
! | TTCGGTAATGGTTCTGCAAA+TGG | - | chr3.4:94991285-94991304 | MS.gene031212:CDS | 40.0% |
! | TTGGTGATTGCCTAGTTTAG+TGG | + | chr3.4:94989058-94989077 | None:intergenic | 40.0% |
! | TTTTCACATTCTGTGTCTGG+AGG | + | chr3.4:94990715-94990734 | None:intergenic | 40.0% |
!! | GATGGGATGTTTTTCGGTAA+TGG | - | chr3.4:94991273-94991292 | MS.gene031212:CDS | 40.0% |
!! | TAATGCAAAGAAGCACCTGT+TGG | + | chr3.4:94990183-94990202 | None:intergenic | 40.0% |
!! | TGATAGTGGTGCTGAAACTA+AGG | - | chr3.4:94993044-94993063 | MS.gene031212:CDS | 40.0% |
!! | TTAAGTGTTTCTGGTGACAG+TGG | + | chr3.4:94991234-94991253 | None:intergenic | 40.0% |
!!! | TGCAGGTTTTGACTAACACA+TGG | - | chr3.4:94990784-94990803 | MS.gene031212:CDS | 40.0% |
AAAGGAAGCTGACAGGGATA+AGG | + | chr3.4:94990532-94990551 | None:intergenic | 45.0% | |
AAATGAGAGGGAAAGCTGCT+AGG | - | chr3.4:94991064-94991083 | MS.gene031212:CDS | 45.0% | |
AAGGAAGCTGACAGGGATAA+GGG | + | chr3.4:94990531-94990550 | None:intergenic | 45.0% | |
ACAACAAGGTGACACTGCTA+TGG | + | chr3.4:94991922-94991941 | None:intergenic | 45.0% | |
ACCAAGAACATCCCTGAACT+TGG | + | chr3.4:94991409-94991428 | None:intergenic | 45.0% | |
ACCAAGTTCAGGGATGTTCT+TGG | - | chr3.4:94991405-94991424 | MS.gene031212:CDS | 45.0% | |
AGAAGCAATTCTGGTCACCA+AGG | - | chr3.4:94991967-94991986 | MS.gene031212:intron | 45.0% | |
AGATGTTGCCAAGCCTGTTT+CGG | - | chr3.4:94991152-94991171 | MS.gene031212:intron | 45.0% | |
AGCAGTGTATCCATCAGAGT+TGG | + | chr3.4:94991355-94991374 | None:intergenic | 45.0% | |
ATATGGGTTCCAGAGATGGA+GGG | + | chr3.4:94990079-94990098 | None:intergenic | 45.0% | |
ATCAACACCAACACAACGTG+TGG | + | chr3.4:94988566-94988585 | None:intergenic | 45.0% | |
ATGATTCTCCGAAACAGGCT+TGG | + | chr3.4:94991163-94991182 | None:intergenic | 45.0% | |
CAACAAGGTGACACTGCTAT+GGG | + | chr3.4:94991921-94991940 | None:intergenic | 45.0% | |
CACTTTCTGCTTCTGCAATC+TGG | + | chr3.4:94992502-94992521 | None:intergenic | 45.0% | |
CAGATTGCAGAAGCAGAAAG+TGG | - | chr3.4:94992500-94992519 | MS.gene031212:intron | 45.0% | |
CATCATAAAGAGGCCAGGTA+TGG | + | chr3.4:94991786-94991805 | None:intergenic | 45.0% | |
CATTATTCTTGCAGTTGCCC+AGG | + | chr3.4:94992865-94992884 | None:intergenic | 45.0% | |
CATTCCAATTGCCTCCTTTC+GGG | + | chr3.4:94989590-94989609 | None:intergenic | 45.0% | |
CCAACACCTTCACTTGTGTA+TGG | + | chr3.4:94988371-94988390 | None:intergenic | 45.0% | |
CCTTACCAAAGCTAAGCTCA+CGG | + | chr3.4:94988283-94988302 | None:intergenic | 45.0% | |
CGACGCTGGATTTAGCTAAT+CGG | - | chr3.4:94987770-94987789 | MS.gene031212:CDS | 45.0% | |
CTCTGTTCTGTCTCTCTCTT+TGG | - | chr3.4:94992541-94992560 | MS.gene031212:intron | 45.0% | |
CTGGTCACCAAGGAAGAAAA+TGG | - | chr3.4:94991977-94991996 | MS.gene031212:intron | 45.0% | |
CTGTTCTGTCTCTCTCTTTG+GGG | - | chr3.4:94992543-94992562 | MS.gene031212:intron | 45.0% | |
CTGTTTATGCAGAGCAGGAA+AGG | - | chr3.4:94991373-94991392 | MS.gene031212:CDS | 45.0% | |
CTTACCAAAGCTAAGCTCAC+GGG | + | chr3.4:94988282-94988301 | None:intergenic | 45.0% | |
GAAGCTGCAAAGACAAATGC+AGG | - | chr3.4:94990767-94990786 | MS.gene031212:CDS | 45.0% | |
GATTGAAAATGCGGCATCAC+CGG | + | chr3.4:94988021-94988040 | None:intergenic | 45.0% | |
GCTTATCCTGACCAAGTTCA+GGG | - | chr3.4:94991395-94991414 | MS.gene031212:CDS | 45.0% | |
GGAAACAAAGGAAGCTGACA+GGG | + | chr3.4:94990538-94990557 | None:intergenic | 45.0% | |
GTTAGGTCGAACAACATGAC+CGG | + | chr3.4:94988404-94988423 | None:intergenic | 45.0% | |
TAAGCCGATGCATGACAACA+AGG | + | chr3.4:94991936-94991955 | None:intergenic | 45.0% | |
TACAATCGGATGTCAGAGCA+TGG | + | chr3.4:94990448-94990467 | None:intergenic | 45.0% | |
TATATGGGTTCCAGAGATGG+AGG | + | chr3.4:94990080-94990099 | None:intergenic | 45.0% | |
TGTGTGAAAAAGTAGGGGAC+GGG | + | chr3.4:94990995-94991014 | None:intergenic | 45.0% | |
TTACCAAAGCTAAGCTCACG+GGG | + | chr3.4:94988281-94988300 | None:intergenic | 45.0% | |
TTAGGTCGAACAACATGACC+GGG | + | chr3.4:94988403-94988422 | None:intergenic | 45.0% | |
TTCTTGCATAGGTAGCCACT+GGG | + | chr3.4:94993107-94993126 | None:intergenic | 45.0% | |
! | ATAGGCAGTGTCGGAAACAA+AGG | + | chr3.4:94990550-94990569 | None:intergenic | 45.0% |
! | ATGGTTTGTGACAGTGACTG+CGG | + | chr3.4:94987868-94987887 | None:intergenic | 45.0% |
! | ATTTTCAGAGCAGAGGACGT+TGG | + | chr3.4:94989927-94989946 | None:intergenic | 45.0% |
! | CCATACACAAGTGAAGGTGT+TGG | - | chr3.4:94988368-94988387 | MS.gene031212:intron | 45.0% |
! | CTCCATACGAAAAGTGTGTC+CGG | + | chr3.4:94988601-94988620 | None:intergenic | 45.0% |
! | GTCACCTTGTTGTCATGCAT+CGG | - | chr3.4:94991929-94991948 | MS.gene031212:intron | 45.0% |
! | TGTGGTGGTGATTGTTTCCA+CGG | + | chr3.4:94987967-94987986 | None:intergenic | 45.0% |
!! | TGCGGACTGCTTGCAATTTT+TGG | + | chr3.4:94989643-94989662 | None:intergenic | 45.0% |
!! | TGGGCATATTGATTCAGCTG+AGG | - | chr3.4:94991744-94991763 | MS.gene031212:intron | 45.0% |
!!! | TTTTTTCCCAGAATGGCTGG+TGG | - | chr3.4:94992717-94992736 | MS.gene031212:intron | 45.0% |
!!! | TCTTTAAAATTTATAATTTA+GGG | + | chr3.4:94992458-94992477 | None:intergenic | 5.0% |
AACCTCTTCACCGGAAGCTT+TGG | + | chr3.4:94988093-94988112 | None:intergenic | 50.0% | |
ACTGTGAGTGCTATGCAGCT+GGG | - | chr3.4:94989506-94989525 | MS.gene031212:CDS | 50.0% | |
AGCGCTTGAAACCTCTTCAC+CGG | + | chr3.4:94988102-94988121 | None:intergenic | 50.0% | |
CATGACTGCTCAACACCAAC+AGG | - | chr3.4:94990165-94990184 | MS.gene031212:CDS | 50.0% | |
CCAGGTATGGGTGTACTACA+TGG | + | chr3.4:94991773-94991792 | None:intergenic | 50.0% | |
CCATGTAGTACACCCATACC+TGG | - | chr3.4:94991770-94991789 | MS.gene031212:intron | 50.0% | |
CGGAAACAAAGGAAGCTGAC+AGG | + | chr3.4:94990539-94990558 | None:intergenic | 50.0% | |
GAACATCCCTGAACTTGGTC+AGG | + | chr3.4:94991404-94991423 | None:intergenic | 50.0% | |
GAGCATCAGGGATGAAAGTC+TGG | - | chr3.4:94988859-94988878 | MS.gene031212:intron | 50.0% | |
GCAATCTGAGCATCATTCCG+AGG | - | chr3.4:94988986-94989005 | MS.gene031212:intron | 50.0% | |
GCAGCTGGGATCTATTGTGA+TGG | - | chr3.4:94989520-94989539 | MS.gene031212:CDS | 50.0% | |
GCAGCTTTCCCTCTCATTTC+TGG | + | chr3.4:94991063-94991082 | None:intergenic | 50.0% | |
GCTAGGAGACTCGTTTCTGA+AGG | + | chr3.4:94989287-94989306 | None:intergenic | 50.0% | |
GCTGCCATTAATGGAGCAGT+TGG | - | chr3.4:94990046-94990065 | MS.gene031212:intron | 50.0% | |
GGAAACAATCACCACCACAG+TGG | - | chr3.4:94987968-94987987 | MS.gene031212:intron | 50.0% | |
GGAGGCAATTGGAATGACAC+TGG | - | chr3.4:94989594-94989613 | MS.gene031212:CDS | 50.0% | |
GGCTTATCCTGACCAAGTTC+AGG | - | chr3.4:94991394-94991413 | MS.gene031212:CDS | 50.0% | |
GTACTCCACACCAAAGCTTC+CGG | - | chr3.4:94988080-94988099 | MS.gene031212:intron | 50.0% | |
GTTCTTGCATAGGTAGCCAC+TGG | + | chr3.4:94993108-94993127 | None:intergenic | 50.0% | |
TACTGTGAGTGCTATGCAGC+TGG | - | chr3.4:94989505-94989524 | MS.gene031212:CDS | 50.0% | |
TAGGTCGAACAACATGACCG+GGG | + | chr3.4:94988402-94988421 | None:intergenic | 50.0% | |
TCGGAAATTTGCGCGGCAAT+TGG | - | chr3.4:94987789-94987808 | MS.gene031212:CDS | 50.0% | |
TCTTTCGTTGAGGTTGCCTG+CGG | - | chr3.4:94993149-94993168 | MS.gene031212:CDS | 50.0% | |
! | CACCGGACACACTTTTCGTA+TGG | - | chr3.4:94988596-94988615 | MS.gene031212:intron | 50.0% |
! | CACTGCTGTTTATGCAGAGC+AGG | - | chr3.4:94991368-94991387 | MS.gene031212:CDS | 50.0% |
! | GGAAGCTTTGGTGTGGAGTA+CGG | + | chr3.4:94988081-94988100 | None:intergenic | 50.0% |
!! | CCGTGAGCTTAGCTTTGGTA+AGG | - | chr3.4:94988280-94988299 | MS.gene031212:intron | 50.0% |
!! | GGCATTTTGACGGTTGAGCT+AGG | - | chr3.4:94988430-94988449 | MS.gene031212:intron | 50.0% |
AAATGCATTTGCGCCGGAGG+AGG | + | chr3.4:94987919-94987938 | None:intergenic | 55.0% | |
AGCCACTGGGATGGAGCAAT+TGG | + | chr3.4:94993094-94993113 | None:intergenic | 55.0% | |
ATCGAAACTAACTGCGGGCG+CGG | + | chr3.4:94988045-94988064 | None:intergenic | 55.0% | |
CACCAAAGCTTCCGGTGAAG+AGG | - | chr3.4:94988088-94988107 | MS.gene031212:intron | 55.0% | |
CAGGAACCACCAGCCATTCT+GGG | + | chr3.4:94992726-94992745 | None:intergenic | 55.0% | |
GAACAATGAGGCTGCCCGAA+AGG | - | chr3.4:94989573-94989592 | MS.gene031212:CDS | 55.0% | |
GGCGACAATGTCAGGTACGA+CGG | + | chr3.4:94987838-94987857 | None:intergenic | 55.0% | |
GGGCGCGGTGATTGAAAATG+CGG | + | chr3.4:94988030-94988049 | None:intergenic | 55.0% | |
GGTGTTCGAGGTTCGACACT+CGG | + | chr3.4:94988329-94988348 | None:intergenic | 55.0% | |
TCACGGGGCCACTTGTGTAT+GGG | + | chr3.4:94988266-94988285 | None:intergenic | 55.0% | |
TCAGGAACCACCAGCCATTC+TGG | + | chr3.4:94992727-94992746 | None:intergenic | 55.0% | |
TCCAAATGCATTTGCGCCGG+AGG | + | chr3.4:94987922-94987941 | None:intergenic | 55.0% | |
TCCTCCGGCGCAAATGCATT+TGG | - | chr3.4:94987918-94987937 | MS.gene031212:CDS | 55.0% | |
TGAAAATGCGGCATCACCGG+CGG | + | chr3.4:94988018-94988037 | None:intergenic | 55.0% | |
TGCATAGGTAGCCACTGGGA+TGG | + | chr3.4:94993103-94993122 | None:intergenic | 55.0% | |
TGCCAATTGCTCCATCCCAG+TGG | - | chr3.4:94993089-94993108 | MS.gene031212:CDS | 55.0% | |
! | CTTCACCGGAAGCTTTGGTG+TGG | + | chr3.4:94988088-94988107 | None:intergenic | 55.0% |
! | TGAGGCTGTGATCTAGGGCT+AGG | + | chr3.4:94989304-94989323 | None:intergenic | 55.0% |
!! | AGGTGTTGGTGTTCGAACCC+CGG | - | chr3.4:94988382-94988401 | MS.gene031212:intron | 55.0% |
ACCGTCGGATTTGCCTCCTC+CGG | - | chr3.4:94987903-94987922 | MS.gene031212:CDS | 60.0% | |
CAATGAGGCTGCCCGAAAGG+AGG | - | chr3.4:94989576-94989595 | MS.gene031212:CDS | 60.0% | |
CAGAGCAGAGGACGTTGGCA+TGG | + | chr3.4:94989922-94989941 | None:intergenic | 60.0% | |
CTCACGGGGCCACTTGTGTA+TGG | + | chr3.4:94988267-94988286 | None:intergenic | 60.0% | |
GACGGTTGAGCTAGGACCTG+TGG | - | chr3.4:94988438-94988457 | MS.gene031212:intron | 60.0% | |
GAGAACGTCACAGTCTCCGC+CGG | - | chr3.4:94987999-94988018 | MS.gene031212:intron | 60.0% | |
GCTGCCCGAAAGGAGGCAAT+TGG | - | chr3.4:94989583-94989602 | MS.gene031212:CDS | 60.0% | |
GGACTTGGACCCTCCATCTC+TGG | - | chr3.4:94990067-94990086 | MS.gene031212:intron | 60.0% | |
GGAGAAGAGCGAAACGACGC+TGG | - | chr3.4:94987756-94987775 | MS.gene031212:CDS | 60.0% | |
GGAGGCAAATCCGACGGTGT+CGG | + | chr3.4:94987901-94987920 | None:intergenic | 60.0% | |
GTACGACGGACCTCCACATG+CGG | + | chr3.4:94987824-94987843 | None:intergenic | 60.0% | |
GTTCTCTGCTGCTGCCACTG+TGG | + | chr3.4:94987985-94988004 | None:intergenic | 60.0% | |
TCTACGACCTCCGACACCGT+CGG | - | chr3.4:94987888-94987907 | MS.gene031212:CDS | 60.0% | |
TGGCCCCGTGAGCTTAGCTT+TGG | - | chr3.4:94988275-94988294 | MS.gene031212:intron | 60.0% | |
TGTGACAGTGACTGCGGCGT+CGG | + | chr3.4:94987862-94987881 | None:intergenic | 60.0% | |
TGTTTCCACGGCCGTCTCAC+TGG | + | chr3.4:94987955-94987974 | None:intergenic | 60.0% | |
TTGGATTTCGCCGCCGCATG+TGG | - | chr3.4:94987808-94987827 | MS.gene031212:CDS | 60.0% | |
! | CGGTGTCGGAGGTCGTAGAA+TGG | + | chr3.4:94987887-94987906 | None:intergenic | 60.0% |
AGTCACCAGTGAGACGGCCG+TGG | - | chr3.4:94987947-94987966 | MS.gene031212:intron | 65.0% | |
CTCTGCTGCTGCCACTGTGG+TGG | + | chr3.4:94987982-94988001 | None:intergenic | 65.0% | |
GATTTCGCCGCCGCATGTGG+AGG | - | chr3.4:94987811-94987830 | MS.gene031212:CDS | 65.0% | |
GCCGGAGGAGGCAAATCCGA+CGG | + | chr3.4:94987907-94987926 | None:intergenic | 65.0% | |
! | GCGTCGGTGGCGACAATGTC+AGG | + | chr3.4:94987846-94987865 | None:intergenic | 65.0% |
! | GGCAAATCCGACGGTGTCGG+AGG | + | chr3.4:94987898-94987917 | None:intergenic | 65.0% |
CGACGGACCTCCACATGCGG+CGG | + | chr3.4:94987821-94987840 | None:intergenic | 70.0% | |
! | GACAGTGACTGCGGCGTCGG+TGG | + | chr3.4:94987859-94987878 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 94987754 | 94993176 | 94987754 | ID=MS.gene031212 |
chr3.4 | mRNA | 94987754 | 94993176 | 94987754 | ID=MS.gene031212.t1;Parent=MS.gene031212 |
chr3.4 | exon | 94992809 | 94993176 | 94992809 | ID=MS.gene031212.t1.exon1;Parent=MS.gene031212.t1 |
chr3.4 | CDS | 94992809 | 94993176 | 94992809 | ID=cds.MS.gene031212.t1;Parent=MS.gene031212.t1 |
chr3.4 | exon | 94991529 | 94991639 | 94991529 | ID=MS.gene031212.t1.exon2;Parent=MS.gene031212.t1 |
chr3.4 | CDS | 94991529 | 94991639 | 94991529 | ID=cds.MS.gene031212.t1;Parent=MS.gene031212.t1 |
chr3.4 | exon | 94991249 | 94991426 | 94991249 | ID=MS.gene031212.t1.exon3;Parent=MS.gene031212.t1 |
chr3.4 | CDS | 94991249 | 94991426 | 94991249 | ID=cds.MS.gene031212.t1;Parent=MS.gene031212.t1 |
chr3.4 | exon | 94990744 | 94991100 | 94990744 | ID=MS.gene031212.t1.exon4;Parent=MS.gene031212.t1 |
chr3.4 | CDS | 94990744 | 94991100 | 94990744 | ID=cds.MS.gene031212.t1;Parent=MS.gene031212.t1 |
chr3.4 | exon | 94990335 | 94990426 | 94990335 | ID=MS.gene031212.t1.exon5;Parent=MS.gene031212.t1 |
chr3.4 | CDS | 94990335 | 94990426 | 94990335 | ID=cds.MS.gene031212.t1;Parent=MS.gene031212.t1 |
chr3.4 | exon | 94990142 | 94990236 | 94990142 | ID=MS.gene031212.t1.exon6;Parent=MS.gene031212.t1 |
chr3.4 | CDS | 94990142 | 94990236 | 94990142 | ID=cds.MS.gene031212.t1;Parent=MS.gene031212.t1 |
chr3.4 | exon | 94989474 | 94989866 | 94989474 | ID=MS.gene031212.t1.exon7;Parent=MS.gene031212.t1 |
chr3.4 | CDS | 94989474 | 94989866 | 94989474 | ID=cds.MS.gene031212.t1;Parent=MS.gene031212.t1 |
chr3.4 | exon | 94987754 | 94987950 | 94987754 | ID=MS.gene031212.t1.exon8;Parent=MS.gene031212.t1 |
chr3.4 | CDS | 94987754 | 94987950 | 94987754 | ID=cds.MS.gene031212.t1;Parent=MS.gene031212.t1 |
Gene Sequence |
Protein sequence |