AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031223


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031223.t1 MTR_3g110180 95.853 434 6 2 1 426 1 430 0.0 858
MS.gene031223.t1 MTR_3g110180 95.622 434 6 3 1 426 1 429 0.0 825
MS.gene031223.t1 MTR_1g004990 60.417 432 152 3 1 424 1 421 0.0 523
MS.gene031223.t1 MTR_6g087070 62.044 411 132 6 1 400 1 398 0.0 513
MS.gene031223.t1 MTR_8g102930 59.039 437 155 6 1 426 1 424 5.83e-177 501
MS.gene031223.t1 MTR_4g126010 64.162 346 109 3 1 337 1 340 1.68e-163 468
MS.gene031223.t1 MTR_2g099670 65.205 342 108 3 1 331 1 342 2.54e-163 468
MS.gene031223.t1 MTR_1g069720 66.352 318 99 1 1 310 1 318 4.24e-160 459
MS.gene031223.t1 MTR_1g042280 67.752 307 91 1 1 299 2 308 1.71e-157 452
MS.gene031223.t1 MTR_7g097160 65.312 320 103 1 1 312 1 320 6.66e-157 451
MS.gene031223.t1 MTR_2g039930 58.933 375 129 6 1 356 1 369 1.52e-156 451
MS.gene031223.t1 MTR_8g018310 64.179 335 103 4 1 327 1 326 2.33e-156 450
MS.gene031223.t1 MTR_8g018310 64.179 335 103 4 1 327 1 326 1.75e-155 446
MS.gene031223.t1 MTR_1g075870 65.015 323 97 2 1 315 2 316 2.20e-155 442
MS.gene031223.t1 MTR_1g075870 65.015 323 97 2 1 315 2 316 2.29e-154 445
MS.gene031223.t1 MTR_1g042280 70.149 268 80 0 32 299 9 276 9.31e-145 414
MS.gene031223.t1 MTR_0492s0030 65.000 300 95 2 1 290 1 300 1.96e-140 406
MS.gene031223.t1 MTR_0543s0020 65.000 300 95 2 1 290 1 300 1.96e-140 406
MS.gene031223.t1 MTR_2g099670 68.214 280 86 2 55 331 11 290 3.93e-140 407
MS.gene031223.t1 MTR_1g075870 68.045 266 77 1 50 315 2 259 4.18e-134 387
MS.gene031223.t1 MTR_2g039930 60.204 294 100 5 74 356 1 288 1.11e-122 362
MS.gene031223.t1 MTR_7g097160 68.927 177 55 0 136 312 25 201 2.61e-85 264
MS.gene031223.t1 MTR_3g110240 37.121 264 155 5 7 265 133 390 7.91e-51 182
MS.gene031223.t1 MTR_1g007150 36.364 264 157 5 7 265 136 393 7.45e-50 179
MS.gene031223.t1 MTR_7g006030 35.206 267 162 5 7 265 49 312 8.55e-50 178
MS.gene031223.t1 MTR_7g085540 36.296 270 162 5 7 269 159 425 2.59e-49 178
MS.gene031223.t1 MTR_1g116210 34.286 280 162 6 5 265 113 389 2.94e-47 172
MS.gene031223.t1 MTR_8g014050 34.444 270 161 7 7 265 140 404 1.47e-42 159
MS.gene031223.t1 MTR_7g116400 52.308 65 30 1 74 137 3 67 7.64e-16 72.8
MS.gene031223.t1 MTR_7g118020 26.728 217 133 5 6 205 141 348 7.21e-12 67.8
MS.gene031223.t1 MTR_4g086660 29.448 163 105 3 44 205 188 341 7.91e-12 67.4
MS.gene031223.t1 MTR_7g073520 32.800 125 71 3 99 221 250 363 8.38e-12 67.4
MS.gene031223.t1 MTR_8g079790 28.221 163 107 3 44 205 179 332 1.48e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031223.t1 AT4G28880 59.346 428 145 6 1 416 1 411 5.05e-178 503
MS.gene031223.t1 AT4G28880 59.346 428 145 6 1 416 1 411 5.05e-178 503
MS.gene031223.t1 AT4G28880 59.346 428 145 6 1 416 1 411 5.05e-178 503
MS.gene031223.t1 AT4G28880 59.346 428 145 6 1 416 1 411 5.05e-178 503
MS.gene031223.t1 AT4G28860 59.569 418 144 5 1 409 1 402 2.60e-176 499
MS.gene031223.t1 AT4G28860 71.384 318 83 1 1 310 1 318 7.65e-175 494
MS.gene031223.t1 AT4G26100 55.422 415 143 9 1 399 1 389 2.67e-159 457
MS.gene031223.t1 AT5G57015 64.308 325 106 2 1 315 1 325 1.34e-156 449
MS.gene031223.t1 AT1G72710 64.329 328 107 3 1 319 1 327 1.42e-156 451
MS.gene031223.t1 AT5G44100 69.360 297 83 1 1 289 1 297 1.84e-155 448
MS.gene031223.t1 AT5G44100 69.360 297 83 1 1 289 1 297 1.84e-155 448
MS.gene031223.t1 AT1G03930 67.340 297 89 1 1 289 1 297 1.97e-154 445
MS.gene031223.t1 AT4G28540 68.121 298 87 1 1 290 5 302 4.38e-154 445
MS.gene031223.t1 AT3G23340 64.688 320 104 2 1 312 1 319 5.93e-154 443
MS.gene031223.t1 AT2G19470 62.614 329 108 2 1 321 1 322 2.17e-153 441
MS.gene031223.t1 AT4G14340 64.062 320 106 2 1 312 7 325 6.82e-152 438
MS.gene031223.t1 AT4G14340 62.090 335 111 2 1 327 7 333 9.54e-152 434
MS.gene031223.t1 AT5G43320 68.013 297 87 1 1 289 1 297 2.26e-150 435
MS.gene031223.t1 AT3G23340 64.423 312 104 2 1 312 1 305 8.44e-150 432
MS.gene031223.t1 AT5G43320 61.383 347 122 3 1 339 1 343 1.44e-149 429
MS.gene031223.t1 AT5G43320 61.383 347 122 3 1 339 1 343 1.44e-149 429
MS.gene031223.t1 AT1G04440 67.340 297 89 1 1 289 1 297 2.20e-148 430
MS.gene031223.t1 AT4G08800 58.163 294 83 3 1 286 1 262 9.53e-121 353
MS.gene031223.t1 AT3G13670 35.424 271 164 5 7 269 149 416 1.51e-50 182
MS.gene031223.t1 AT2G25760 36.194 268 162 4 7 265 119 386 2.27e-50 181
MS.gene031223.t1 AT3G03940 36.296 270 162 5 7 269 152 418 2.44e-50 181
MS.gene031223.t1 AT2G25760 36.567 268 158 5 7 265 119 383 7.72e-50 179
MS.gene031223.t1 AT5G18190 35.662 272 165 5 7 271 142 410 3.00e-49 178
MS.gene031223.t1 AT5G18190 35.662 272 165 5 7 271 142 410 3.00e-49 178
MS.gene031223.t1 AT3G50530 30.061 163 104 3 44 205 199 352 2.48e-13 72.4
MS.gene031223.t1 AT3G49370 28.440 218 130 6 7 207 140 348 1.04e-11 67.4
MS.gene031223.t1 AT3G50530 28.495 186 108 6 44 205 199 383 3.84e-11 65.5
MS.gene031223.t1 AT5G24430 27.854 219 130 6 7 207 141 349 3.97e-11 65.5
MS.gene031223.t1 AT2G46700 29.082 196 118 5 11 205 172 347 9.51e-11 64.3

Find 98 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTTCCTGTGGGCCTTTC+AGG 0.062348 3.4:-95159856 None:intergenic
TCAAACCTAGGTCGTGTATT+TGG 0.098979 3.4:+95159877 MS.gene031223:CDS
AGGAATATGCTTGCTTGTTT+TGG 0.195324 3.4:-95156590 None:intergenic
TATTCTGGTTATGGATCTTC+TGG 0.212846 3.4:+95155993 MS.gene031223:CDS
TTTGATCAAGATCCAGATTA+TGG 0.217415 3.4:+95158125 MS.gene031223:CDS
TTGGAGAAGACTGTATAATT+TGG 0.243957 3.4:-95155820 None:intergenic
GAATCCAGCTGCTTGAAATA+TGG 0.275973 3.4:-95159909 None:intergenic
CAAGCAAGCATATTCCTTAT+AGG 0.278492 3.4:+95156596 MS.gene031223:CDS
ATAACTTCCTAATGGGTATT+AGG 0.293154 3.4:+95156388 MS.gene031223:CDS
GCAGCTGGATTCCTTCTTTA+CGG 0.295950 3.4:+95159920 MS.gene031223:CDS
AGAGAGAATAAAAGTTTAAC+AGG 0.303019 3.4:+95157389 MS.gene031223:intron
CAAACCTAGGTCGTGTATTT+GGG 0.321394 3.4:+95159878 MS.gene031223:CDS
GCAAAGTCGCCGTGATGATT+TGG 0.329153 3.4:+95157535 MS.gene031223:CDS
ATACCCATTAGGAAGTTATC+TGG 0.331317 3.4:-95156384 None:intergenic
TAGGTTTATATTATTGATTT+CGG 0.339874 3.4:+95156544 MS.gene031223:intron
TGATGGAGATCATAATATTC+TGG 0.354764 3.4:+95155978 MS.gene031223:CDS
GGATCTTCTGGGACGTAGTC+TGG 0.355238 3.4:+95156005 MS.gene031223:CDS
AGCATTTAGATTCTTTAGAT+TGG 0.357090 3.4:-95159548 None:intergenic
CAAACCAGATAACTTCCTAA+TGG 0.358154 3.4:+95156380 MS.gene031223:CDS
CGCTTTAAGAATCCATAATC+TGG 0.362175 3.4:-95158137 None:intergenic
GTCCTTATGTACTTCTTAAG+AGG 0.366081 3.4:+95157572 MS.gene031223:CDS
AACAACAAAATATACCTATA+AGG 0.367234 3.4:-95156610 None:intergenic
CGTGATGATTTGGAGTCTAT+TGG 0.367974 3.4:+95157545 MS.gene031223:CDS
AGATCATAATATTCTGGTTA+TGG 0.373211 3.4:+95155984 MS.gene031223:CDS
TGAGGTCGTTGCCGTCAAAA+TGG 0.379560 3.4:+95155324 MS.gene031223:CDS
TTTAAGATTGGTCGCAAAAT+CGG 0.381240 3.4:+95155160 MS.gene031223:CDS
TATATTATTGATTTCGGACT+AGG 0.399991 3.4:+95156550 MS.gene031223:CDS
CACATTTGGACGATCAAGAT+TGG 0.402023 3.4:-95159506 None:intergenic
TTAGGCTGCACACGCACATT+TGG 0.429031 3.4:-95159520 None:intergenic
AAACCAGATAACTTCCTAAT+GGG 0.430261 3.4:+95156381 MS.gene031223:CDS
TTTATAACTTACTTTCTCCT+TGG 0.432685 3.4:-95155839 None:intergenic
AATCCAGCTGCTTGAAATAT+GGG 0.440658 3.4:-95159908 None:intergenic
ACTCCCATATTTCAAGCAGC+TGG 0.449190 3.4:+95159905 MS.gene031223:CDS
TGCTCCCGCAGAAGACAAAA+AGG 0.451965 3.4:-95156032 None:intergenic
TTTAGATTCTTTAGATTGGA+TGG 0.456240 3.4:-95159544 None:intergenic
GTTGGCGGAAAGTTTAAGAT+TGG 0.473575 3.4:+95155148 MS.gene031223:CDS
ATTCTGGTTATGGATCTTCT+GGG 0.476383 3.4:+95155994 MS.gene031223:CDS
ACTATGACAATTTATTCGAC+TGG 0.479555 3.4:+95158737 MS.gene031223:CDS
TGCAATACTCACTTAGGAAT+CGG 0.487644 3.4:+95157431 MS.gene031223:CDS
TTCTTTAGATTGGATGGCTT+AGG 0.488699 3.4:-95159538 None:intergenic
TTCCTCTTAAGAAGTACATA+AGG 0.490195 3.4:-95157574 None:intergenic
GAAGAAATTCGCCGTAAAGA+AGG 0.496549 3.4:-95159931 None:intergenic
CAGTCTACAACCAGTGGTTG+TGG 0.500770 3.4:+95159000 MS.gene031223:CDS
GTACCGCACCATCTCATAGT+TGG 0.509024 3.4:-95155955 None:intergenic
TCTAAATGCTAAGAATCATA+CGG 0.510015 3.4:+95159561 MS.gene031223:CDS
CGTGAGTTGTTCACTCGTGA+AGG 0.516158 3.4:+95158167 MS.gene031223:CDS
AATAGAGTACATGCATTCCA+AGG 0.528223 3.4:+95156338 MS.gene031223:CDS
GCATCCACAACTATTGTATG+AGG 0.532224 3.4:+95155797 MS.gene031223:CDS
GCAAGTTGCAATACTCACTT+AGG 0.533425 3.4:+95157425 MS.gene031223:CDS
AACATGGAGTGGGTCGTTGG+CGG 0.534619 3.4:+95155133 None:intergenic
ACCTAGGTTTGAAGTTCCTG+TGG 0.540684 3.4:-95159866 None:intergenic
TATTAGGAGAAAATCAAGTC+AGG 0.540941 3.4:+95156404 MS.gene031223:CDS
TTGGCCTCATACAATAGTTG+TGG 0.548570 3.4:-95155801 None:intergenic
CAATGATCCGTCCACTTCAT+CGG 0.549710 3.4:+95159798 MS.gene031223:CDS
TTATGTACTTCTTAAGAGGA+AGG 0.553282 3.4:+95157576 MS.gene031223:CDS
CTTTCAGACCCTGCCAAGGA+AGG 0.558293 3.4:-95157725 None:intergenic
ATGAGATGGTGCGGTACTGA+TGG 0.560221 3.4:+95155961 MS.gene031223:CDS
AACAACATGGAGTGGGTCGT+TGG 0.562685 3.4:+95155130 None:intergenic
TTTGATGTTAGCAGACCAGA+TGG 0.566646 3.4:+95156074 MS.gene031223:CDS
TGTAGGAGAAGAAGAGAACA+AGG 0.572961 3.4:+95155775 MS.gene031223:intron
CTAAATGCTAAGAATCATAC+GGG 0.574445 3.4:+95159562 MS.gene031223:CDS
GAATAAAAGTTTAACAGGGA+CGG 0.577039 3.4:+95157394 MS.gene031223:CDS
TTTGGGCAAAGCCGATGAAG+TGG 0.584387 3.4:-95159809 None:intergenic
TCTAAGCCTGAAAGGCCCAC+AGG 0.585651 3.4:+95159850 MS.gene031223:CDS
GCACTAGGTACGGCATCTGA+AGG 0.595661 3.4:-95158956 None:intergenic
TATTCCCAAATACACGACCT+AGG 0.597805 3.4:-95159882 None:intergenic
AAAGTAAGACGCAAACTCCA+CGG 0.599632 3.4:-95158081 None:intergenic
CATCCGCTAACAACATGGAG+TGG 0.601509 3.4:+95155122 None:intergenic
AAGTAAGACGCAAACTCCAC+GGG 0.604948 3.4:-95158080 None:intergenic
CCTAGGTTTGAAGTTCCTGT+GGG 0.606084 3.4:-95159865 None:intergenic
ACTAGGAACAGCACTAGGTA+CGG 0.607129 3.4:-95158966 None:intergenic
ACCACTGGTTGTAGACTGCT+AGG 0.607910 3.4:-95158995 None:intergenic
ATCAGCAGACGCAACAGACA+AGG 0.613053 3.4:+95158773 MS.gene031223:CDS
ATCCGCTAACAACATGGAGT+GGG 0.614583 3.4:+95155123 None:intergenic
TGGATCTTGATCAAATGTCA+AGG 0.615184 3.4:-95158117 None:intergenic
GTGGTATTCCAACTATGAGA+TGG 0.615515 3.4:+95155947 MS.gene031223:CDS
AGACTGCTAGGCACAGCACT+AGG 0.616647 3.4:-95158983 None:intergenic
AAGGAGACAAAAGCAATCAT+CGG 0.624317 3.4:+95158792 MS.gene031223:CDS
ATTGGTCGCAAAATCGGAAG+CGG 0.626522 3.4:+95155166 MS.gene031223:CDS
CTCAGAGGTGTCCATATCAG+AGG 0.626948 3.4:-95155305 None:intergenic
GGCAAAGCCGATGAAGTGGA+CGG 0.627991 3.4:-95159805 None:intergenic
AAAATGTCTCTAAGCCTGAA+AGG 0.629959 3.4:+95159842 MS.gene031223:CDS
CCCACAGGAACTTCAAACCT+AGG 0.637853 3.4:+95159865 MS.gene031223:CDS
AAATTATACAGTCTTCTCCA+AGG 0.638640 3.4:+95155822 MS.gene031223:CDS
GCCTAGCAGTCTACAACCAG+TGG 0.640292 3.4:+95158994 MS.gene031223:CDS
ACAGCTTTCAGACCCTGCCA+AGG 0.644712 3.4:-95157729 None:intergenic
ATTGAAAATGTATACCTCAG+TGG 0.646544 3.4:-95157802 None:intergenic
TCTTCTGGGACGTAGTCTGG+AGG 0.649427 3.4:+95156008 MS.gene031223:CDS
TCTGAAAGCTGTCACCAAAG+AGG 0.650261 3.4:+95157740 MS.gene031223:CDS
ACAGCACTAGGAACAGCACT+AGG 0.656993 3.4:-95158971 None:intergenic
ATAGAGTACATGCATTCCAA+GGG 0.660373 3.4:+95156339 MS.gene031223:CDS
GCTTTGCGAATCATATCCCG+TGG 0.663642 3.4:+95158064 MS.gene031223:CDS
CTCTGATATGGACACCTCTG+AGG 0.669495 3.4:+95155306 MS.gene031223:CDS
CAATAGACTCCAAATCATCA+CGG 0.670210 3.4:-95157544 None:intergenic
ATTCCAACTATGAGATGGTG+CGG 0.673968 3.4:+95155952 MS.gene031223:CDS
GAGAGAATAAAAGTTTAACA+GGG 0.702224 3.4:+95157390 MS.gene031223:intron
TTTGACGGCAACGACCTCAG+AGG 0.711927 3.4:-95155320 None:intergenic
GAAGTTATCAACTTCCACTG+AGG 0.761442 3.4:+95157788 MS.gene031223:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAATAATAATAATAACA+AGG - chr3.4:95159307-95159326 None:intergenic 10.0%
!!! ACATTTTGAATTTTAAAAAA+TGG + chr3.4:95157630-95157649 MS.gene031223:intron 10.0%
!!! ATATTTCTAATCTTTTATTA+TGG + chr3.4:95156644-95156663 MS.gene031223:intron 10.0%
!!! TATTATTATTATTTTTCACT+TGG + chr3.4:95159310-95159329 MS.gene031223:intron 10.0%
!! AAAAAAATGTCTAAATTTGA+TGG + chr3.4:95157000-95157019 MS.gene031223:intron 15.0%
!! AAATAAACTTCTTATTACAT+CGG - chr3.4:95158692-95158711 None:intergenic 15.0%
!! TGATATTAATTATTCTTCAT+TGG + chr3.4:95156834-95156853 MS.gene031223:intron 15.0%
!!! ATTCTTTTTAGGTAAATTTA+GGG + chr3.4:95157675-95157694 MS.gene031223:intron 15.0%
!!! TAAACAAATCAAGTATTTTT+AGG - chr3.4:95156705-95156724 None:intergenic 15.0%
!!! TAGGTTTATATTATTGATTT+CGG + chr3.4:95156544-95156563 MS.gene031223:intron 15.0%
!!! TGTTTTGATTTTTTTTTACT+TGG + chr3.4:95159730-95159749 MS.gene031223:intron 15.0%
!! AAAATTAAGAAGAAATCCAA+TGG - chr3.4:95159622-95159641 None:intergenic 20.0%
!! AACAACAAAATATACCTATA+AGG - chr3.4:95156613-95156632 None:intergenic 20.0%
!! AATAAACTTCTTATTACATC+GGG - chr3.4:95158691-95158710 None:intergenic 20.0%
!! AATAATAACAAGGAATTTGT+TGG - chr3.4:95159297-95159316 None:intergenic 20.0%
!! AATCAGGAAAGTTTAATAAT+CGG - chr3.4:95158898-95158917 None:intergenic 20.0%
!! ATCATAAAATGTTAGATAGT+TGG - chr3.4:95158481-95158500 None:intergenic 20.0%
!! ATGAAACATAAAAGGAATTA+TGG - chr3.4:95156487-95156506 None:intergenic 20.0%
!! CAAAATAGAATGAAATTTGT+GGG - chr3.4:95157499-95157518 None:intergenic 20.0%
!! GAAATTAAAAACTAGATTGA+GGG - chr3.4:95157851-95157870 None:intergenic 20.0%
!! GATGTAATAAGAAGTTTATT+TGG + chr3.4:95158691-95158710 MS.gene031223:intron 20.0%
!! GTAAGAAAATTACAATGAAT+GGG - chr3.4:95157612-95157631 None:intergenic 20.0%
!! TAAGACATATGAAACATAAA+AGG - chr3.4:95156495-95156514 None:intergenic 20.0%
!! TAGACCATAAAAATGTTTAA+AGG - chr3.4:95158836-95158855 None:intergenic 20.0%
!! TGAAACATAAAAGGAATTAT+GGG - chr3.4:95156486-95156505 None:intergenic 20.0%
!! TGTAAGAAAATTACAATGAA+TGG - chr3.4:95157613-95157632 None:intergenic 20.0%
!! TTTAAGTAATTACTGTCAAT+TGG + chr3.4:95158220-95158239 MS.gene031223:intron 20.0%
!!! AACAATATTAAGAGCTTTTA+AGG + chr3.4:95157926-95157945 MS.gene031223:intron 20.0%
!!! AACATTAAAGTATTAACGTA+AGG - chr3.4:95157077-95157096 None:intergenic 20.0%
!!! AAGTTATAAAAGAAGCATTT+GGG + chr3.4:95155852-95155871 MS.gene031223:intron 20.0%
!!! AATTTTTGGATATAGAGTAA+TGG - chr3.4:95158519-95158538 None:intergenic 20.0%
!!! ACATTAAAGTATTAACGTAA+GGG - chr3.4:95157076-95157095 None:intergenic 20.0%
!!! ATATCCAAAAATTCATGTTT+TGG + chr3.4:95158526-95158545 MS.gene031223:intron 20.0%
!!! ATGATAATTTGCTTATTAGT+TGG + chr3.4:95158274-95158293 MS.gene031223:intron 20.0%
!!! ATGATATTAAATATGGCTTT+TGG + chr3.4:95156159-95156178 MS.gene031223:intron 20.0%
!!! ATTTCCAAAACATGAATTTT+TGG - chr3.4:95158533-95158552 None:intergenic 20.0%
!!! CATTCTTTTTAGGTAAATTT+AGG + chr3.4:95157674-95157693 MS.gene031223:intron 20.0%
!!! TAAGTTATAAAAGAAGCATT+TGG + chr3.4:95155851-95155870 MS.gene031223:intron 20.0%
!!! TAGGTATTTTTTGCTTATAA+TGG + chr3.4:95157127-95157146 MS.gene031223:intron 20.0%
!!! TCATGTTTTTACTTGTTATA+AGG + chr3.4:95156668-95156687 MS.gene031223:intron 20.0%
!!! TCATTTGGTGAAATTTATAT+AGG + chr3.4:95155190-95155209 MS.gene031223:intron 20.0%
!!! TGAAAGTGTGTAAAAAATAA+AGG - chr3.4:95155685-95155704 None:intergenic 20.0%
!!! TGAACCTTTAAACATTTTTA+TGG + chr3.4:95158829-95158848 MS.gene031223:intron 20.0%
!!! TTCCTTGATGATATTAAATA+TGG + chr3.4:95156152-95156171 MS.gene031223:intron 20.0%
! AAAACTGCTACTATATTGAT+AGG - chr3.4:95156206-95156225 None:intergenic 25.0%
! AAGAAAGGTTAAATACTTAG+TGG - chr3.4:95158342-95158361 None:intergenic 25.0%
! AGAGAGAATAAAAGTTTAAC+AGG + chr3.4:95157389-95157408 MS.gene031223:intron 25.0%
! AGCATTTAGATTCTTTAGAT+TGG - chr3.4:95159551-95159570 None:intergenic 25.0%
! AGCCATATTTAATATCATCA+AGG - chr3.4:95156157-95156176 None:intergenic 25.0%
! AGTTTAACTAGTCAAGTTAA+TGG + chr3.4:95157334-95157353 MS.gene031223:intron 25.0%
! ATAAACTTCTTATTACATCG+GGG - chr3.4:95158690-95158709 None:intergenic 25.0%
! ATCAGGAAAGTTTAATAATC+GGG - chr3.4:95158897-95158916 None:intergenic 25.0%
! CACAAAATTTGCATAACTAA+AGG - chr3.4:95158371-95158390 None:intergenic 25.0%
! CACTTCAATATACATTATCT+AGG - chr3.4:95159113-95159132 None:intergenic 25.0%
! CATTGGATAACAGTTAATAA+AGG + chr3.4:95156851-95156870 MS.gene031223:intron 25.0%
! CCAAAATAGAATGAAATTTG+TGG - chr3.4:95157500-95157519 None:intergenic 25.0%
! GAGAGAATAAAAGTTTAACA+GGG + chr3.4:95157390-95157409 MS.gene031223:intron 25.0%
! GGAAATTAAAAACTAGATTG+AGG - chr3.4:95157852-95157871 None:intergenic 25.0%
! GTTAATACTTTAATGTTGTG+AGG + chr3.4:95157080-95157099 MS.gene031223:intron 25.0%
! TAAATTCTAACTCATTCTAC+TGG - chr3.4:95159161-95159180 None:intergenic 25.0%
! TACAAAATGTTGATCTCATT+AGG - chr3.4:95155449-95155468 None:intergenic 25.0%
! TCTAAATGCTAAGAATCATA+CGG + chr3.4:95159561-95159580 MS.gene031223:CDS 25.0%
! TCTAAATTCATTATCTTCAC+TGG + chr3.4:95156435-95156454 MS.gene031223:intron 25.0%
! TTATCAAGGTCAAAACATTA+GGG - chr3.4:95157361-95157380 None:intergenic 25.0%
! TTTAGATTCTTTAGATTGGA+TGG - chr3.4:95159547-95159566 None:intergenic 25.0%
! TTTATAACTTACTTTCTCCT+TGG - chr3.4:95155842-95155861 None:intergenic 25.0%
! TTTATCAAGGTCAAAACATT+AGG - chr3.4:95157362-95157381 None:intergenic 25.0%
!! AAAGAAACAAACCATTTTGA+CGG - chr3.4:95155338-95155357 None:intergenic 25.0%
!! AGATCATAATATTCTGGTTA+TGG + chr3.4:95155984-95156003 MS.gene031223:CDS 25.0%
!! AGCTTGATAACATGAAATTA+GGG + chr3.4:95155580-95155599 MS.gene031223:intron 25.0%
!! ATCAATTGCACATTCTTTTT+AGG + chr3.4:95157664-95157683 MS.gene031223:intron 25.0%
!! ATCTCAAATAATTCCTTTTC+CGG + chr3.4:95157261-95157280 MS.gene031223:intron 25.0%
!! ATGAGATCAACATTTTGTAT+CGG + chr3.4:95155450-95155469 MS.gene031223:intron 25.0%
!! CCACAAATTTCATTCTATTT+TGG + chr3.4:95157497-95157516 MS.gene031223:intron 25.0%
!! TAGCTTGATAACATGAAATT+AGG + chr3.4:95155579-95155598 MS.gene031223:intron 25.0%
!! TCTATTTACAAAAGTTCTAG+AGG + chr3.4:95156729-95156748 MS.gene031223:intron 25.0%
!! TGAAATTAGGGATATGTTTT+TGG + chr3.4:95155592-95155611 MS.gene031223:intron 25.0%
!! TTTTAATGCTCATTGCAAAA+CGG + chr3.4:95159189-95159208 MS.gene031223:intron 25.0%
!!! ATTATTTTTCACTTGGAAGT+TGG + chr3.4:95159317-95159336 MS.gene031223:intron 25.0%
!!! CTGCAATTTGTTACATTTAT+AGG + chr3.4:95156525-95156544 MS.gene031223:intron 25.0%
!!! GCTACATTTCTTTATTTTGT+AGG + chr3.4:95155758-95155777 MS.gene031223:intron 25.0%
!!! TATATTATTGATTTCGGACT+AGG + chr3.4:95156550-95156569 MS.gene031223:CDS 25.0%
!!! TGAATTATTGATTCCTGAAA+AGG - chr3.4:95159458-95159477 None:intergenic 25.0%
!!! TGCTTGCTTTATTTTTCAAT+TGG + chr3.4:95156120-95156139 MS.gene031223:intron 25.0%
AAACCAGATAACTTCCTAAT+GGG + chr3.4:95156381-95156400 MS.gene031223:CDS 30.0%
AAATTATACAGTCTTCTCCA+AGG + chr3.4:95155822-95155841 MS.gene031223:CDS 30.0%
AACGAATTCTGTTCAATTGT+GGG + chr3.4:95159079-95159098 MS.gene031223:intron 30.0%
AACTAAAGGAGAAAGAAGAA+AGG - chr3.4:95158357-95158376 None:intergenic 30.0%
AATCAACTATACTGCAAACT+TGG - chr3.4:95159389-95159408 None:intergenic 30.0%
ACATAAAAGGAATTATGGGA+CGG - chr3.4:95156482-95156501 None:intergenic 30.0%
ACTATGACAATTTATTCGAC+TGG + chr3.4:95158737-95158756 MS.gene031223:CDS 30.0%
AGATTACACAGATTACAAGT+TGG - chr3.4:95157245-95157264 None:intergenic 30.0%
ATGTACTAGTAACCAATCTT+AGG + chr3.4:95158617-95158636 MS.gene031223:intron 30.0%
ATTAAGACATGTACATCATC+AGG - chr3.4:95159433-95159452 None:intergenic 30.0%
ATTCTTCATTTGTGTTTGCT+TGG + chr3.4:95158572-95158591 MS.gene031223:intron 30.0%
ATTGAAAATGTATACCTCAG+TGG - chr3.4:95157805-95157824 None:intergenic 30.0%
ATTTGGATCTCATATGGAAA+AGG + chr3.4:95155878-95155897 MS.gene031223:intron 30.0%
CATGTCTTAGCAATTAATAG+AGG - chr3.4:95159655-95159674 None:intergenic 30.0%
CTAAATGCTAAGAATCATAC+GGG + chr3.4:95159562-95159581 MS.gene031223:CDS 30.0%
CTCTATTAATTGCTAAGACA+TGG + chr3.4:95159653-95159672 MS.gene031223:intron 30.0%
CTCTCTGTATAAGTTTATCA+AGG - chr3.4:95157375-95157394 None:intergenic 30.0%
CTTCTTATGTTCATACAATG+AGG + chr3.4:95159046-95159065 MS.gene031223:intron 30.0%
GAAGATAAATACAACACAAG+AGG - chr3.4:95158665-95158684 None:intergenic 30.0%
GAATAAAAGTTTAACAGGGA+CGG + chr3.4:95157394-95157413 MS.gene031223:CDS 30.0%
GCAATTAATAGAGGATATAG+AGG - chr3.4:95159646-95159665 None:intergenic 30.0%
GTGATGAATGATAAAGAGAT+GGG - chr3.4:95155380-95155399 None:intergenic 30.0%
TAAACTTATACTTGCTTGCT+AGG + chr3.4:95155647-95155666 MS.gene031223:intron 30.0%
TAAACTTCTTATTACATCGG+GGG - chr3.4:95158689-95158708 None:intergenic 30.0%
TATTAATTGCTAAGACATGG+TGG + chr3.4:95159656-95159675 MS.gene031223:intron 30.0%
TATTAGGAGAAAATCAAGTC+AGG + chr3.4:95156404-95156423 MS.gene031223:CDS 30.0%
TGATCTATTCCTTAGATTAC+CGG - chr3.4:95155420-95155439 None:intergenic 30.0%
TGATGGAGATCATAATATTC+TGG + chr3.4:95155978-95155997 MS.gene031223:CDS 30.0%
TGGTAAATATCTGTCAATCT+TGG - chr3.4:95159277-95159296 None:intergenic 30.0%
TGTACTAGTAACCAATCTTA+GGG + chr3.4:95158618-95158637 MS.gene031223:intron 30.0%
TGTGTGACATTAAAACAATC+TGG - chr3.4:95156770-95156789 None:intergenic 30.0%
TTACCAAAAACTTCTGTAAC+TGG + chr3.4:95156910-95156929 MS.gene031223:intron 30.0%
TTACTGTCAATTGGACATAT+AGG + chr3.4:95158229-95158248 MS.gene031223:intron 30.0%
TTATGTACTTCTTAAGAGGA+AGG + chr3.4:95157576-95157595 MS.gene031223:CDS 30.0%
TTGGAGAAGACTGTATAATT+TGG - chr3.4:95155823-95155842 None:intergenic 30.0%
TTTGATCAAGATCCAGATTA+TGG + chr3.4:95158125-95158144 MS.gene031223:CDS 30.0%
! AAATTTAGGGCTTGACTATA+TGG + chr3.4:95157688-95157707 MS.gene031223:intron 30.0%
! ATAACTTCCTAATGGGTATT+AGG + chr3.4:95156388-95156407 MS.gene031223:CDS 30.0%
! ATTTTCTCCTAATACCCATT+AGG - chr3.4:95156398-95156417 None:intergenic 30.0%
! CATGTCTTAATTTCCTTTTC+AGG + chr3.4:95159442-95159461 MS.gene031223:intron 30.0%
! CTTGTCATATTTTTCCTCTT+TGG - chr3.4:95157757-95157776 None:intergenic 30.0%
! GATCATTGCCTATTTTCTTA+TGG + chr3.4:95156936-95156955 MS.gene031223:intron 30.0%
! TAAAACAATCTGGTTTCATG+TGG - chr3.4:95156760-95156779 None:intergenic 30.0%
! TGAGATCAACATTTTGTATC+GGG + chr3.4:95155451-95155470 MS.gene031223:intron 30.0%
! TGCTTATAATGGAGTTTAGA+GGG + chr3.4:95157138-95157157 MS.gene031223:intron 30.0%
! TTCCTCTTAAGAAGTACATA+AGG - chr3.4:95157577-95157596 None:intergenic 30.0%
! TTGCTTATAATGGAGTTTAG+AGG + chr3.4:95157137-95157156 MS.gene031223:intron 30.0%
! TTTAAGATTGGTCGCAAAAT+CGG + chr3.4:95155160-95155179 MS.gene031223:CDS 30.0%
!! AAGAAGCATTTGGGTATATT+TGG + chr3.4:95155861-95155880 MS.gene031223:intron 30.0%
!! AATAGTCATTGATTCAAGTG+AGG - chr3.4:95158931-95158950 None:intergenic 30.0%
!! ACATTTTCTGCAGTTGATTT+GGG - chr3.4:95159829-95159848 None:intergenic 30.0%
!! CTTTTAAGGATTGCTATTAC+TGG + chr3.4:95157940-95157959 MS.gene031223:intron 30.0%
!!! AGTTTTGTTACAGTAACTTG+AGG - chr3.4:95159481-95159500 None:intergenic 30.0%
!!! GATTGTTTTAATGTCACACA+TGG + chr3.4:95156770-95156789 MS.gene031223:intron 30.0%
AAAAACTAGATTGAGGGTCA+GGG - chr3.4:95157845-95157864 None:intergenic 35.0%
AAAATGTCTCTAAGCCTGAA+AGG + chr3.4:95159842-95159861 MS.gene031223:CDS 35.0%
AAGGAGACAAAAGCAATCAT+CGG + chr3.4:95158792-95158811 MS.gene031223:CDS 35.0%
AATAGAGTACATGCATTCCA+AGG + chr3.4:95156338-95156357 MS.gene031223:CDS 35.0%
AATCAGAACTCAGAAAAGTC+CGG - chr3.4:95157283-95157302 None:intergenic 35.0%
AATCCAGCTGCTTGAAATAT+GGG - chr3.4:95159911-95159930 None:intergenic 35.0%
ACATACTGCATACAGTACAT+AGG + chr3.4:95158412-95158431 MS.gene031223:intron 35.0%
ACCATAATAAGTGTGGAAGT+AGG + chr3.4:95157108-95157127 MS.gene031223:intron 35.0%
ACCTACTTCCACACTTATTA+TGG - chr3.4:95157112-95157131 None:intergenic 35.0%
AGTTTAAACCCTGATCATCA+AGG + chr3.4:95155529-95155548 MS.gene031223:intron 35.0%
ATACCCATTAGGAAGTTATC+TGG - chr3.4:95156387-95156406 None:intergenic 35.0%
ATAGAGTACATGCATTCCAA+GGG + chr3.4:95156339-95156358 MS.gene031223:CDS 35.0%
ATAGTTCCAGGTATTCATGT+AGG - chr3.4:95157900-95157919 None:intergenic 35.0%
ATCGAAAAGTTACCTCTTGT+AGG + chr3.4:95156228-95156247 MS.gene031223:intron 35.0%
ATTGTTTCGTCAATAGTTCC+AGG - chr3.4:95157912-95157931 None:intergenic 35.0%
CAAACCAGATAACTTCCTAA+TGG + chr3.4:95156380-95156399 MS.gene031223:CDS 35.0%
CAAGCAAGCATATTCCTTAT+AGG + chr3.4:95156596-95156615 MS.gene031223:CDS 35.0%
CAAGGATGCCATAAGAAAAT+AGG - chr3.4:95156947-95156966 None:intergenic 35.0%
CAATAGACTCCAAATCATCA+CGG - chr3.4:95157547-95157566 None:intergenic 35.0%
CATAAAAGGAATTATGGGAC+GGG - chr3.4:95156481-95156500 None:intergenic 35.0%
CGTGATGAATGATAAAGAGA+TGG - chr3.4:95155381-95155400 None:intergenic 35.0%
CTCAACAACTATTGTGTACA+AGG + chr3.4:95155715-95155734 MS.gene031223:intron 35.0%
CTCATTGCAAAACGGAAAAA+AGG + chr3.4:95159197-95159216 MS.gene031223:intron 35.0%
CTTCAATGATAAAACCTCTC+AGG - chr3.4:95157994-95158013 None:intergenic 35.0%
GAACGAATTCTGTTCAATTG+TGG + chr3.4:95159078-95159097 MS.gene031223:intron 35.0%
GGGTATATTTGGATCTCATA+TGG + chr3.4:95155872-95155891 MS.gene031223:intron 35.0%
GTCCTTATGTACTTCTTAAG+AGG + chr3.4:95157572-95157591 MS.gene031223:CDS 35.0%
GTCTCTATGTAAAAATCCCT+TGG - chr3.4:95156358-95156377 None:intergenic 35.0%
GTGAGGAAGAGAATAAAATC+AGG - chr3.4:95158914-95158933 None:intergenic 35.0%
GTGCTTAAGTAGAGATATTC+TGG - chr3.4:95158394-95158413 None:intergenic 35.0%
TAAAAACTAGATTGAGGGTC+AGG - chr3.4:95157846-95157865 None:intergenic 35.0%
TACAAGCTTAGCTGTAAAGA+AGG - chr3.4:95157475-95157494 None:intergenic 35.0%
TCATGTAGGTCAAAGTATGA+GGG - chr3.4:95157886-95157905 None:intergenic 35.0%
TGATGATCAGGGTTTAAACT+CGG - chr3.4:95155529-95155548 None:intergenic 35.0%
TGCAATACTCACTTAGGAAT+CGG + chr3.4:95157431-95157450 MS.gene031223:CDS 35.0%
TGCATTTACTGGAATGCATA+TGG + chr3.4:95158859-95158878 MS.gene031223:intron 35.0%
TGGATCTTGATCAAATGTCA+AGG - chr3.4:95158120-95158139 None:intergenic 35.0%
TTATAACTGCACAGTAGTAC+TGG - chr3.4:95156977-95156996 None:intergenic 35.0%
TTCATGTAGGTCAAAGTATG+AGG - chr3.4:95157887-95157906 None:intergenic 35.0%
TTCTTTAGATTGGATGGCTT+AGG - chr3.4:95159541-95159560 None:intergenic 35.0%
TTTGGCTGAATTTAATGAGC+AGG + chr3.4:95158709-95158728 MS.gene031223:intron 35.0%
! ACACCAGTTACAGAAGTTTT+TGG - chr3.4:95156916-95156935 None:intergenic 35.0%
! ACATTTTGTATCGGGTTTGA+TGG + chr3.4:95155459-95155478 MS.gene031223:intron 35.0%
! AGGAATATGCTTGCTTGTTT+TGG - chr3.4:95156593-95156612 None:intergenic 35.0%
! ATTCTGGTTATGGATCTTCT+GGG + chr3.4:95155994-95156013 MS.gene031223:CDS 35.0%
! CATTTTGTATCGGGTTTGAT+GGG + chr3.4:95155460-95155479 MS.gene031223:intron 35.0%
! CTTATAATGGAGTTTAGAGG+GGG + chr3.4:95157140-95157159 MS.gene031223:intron 35.0%
! CTTCTGAGAACAAGGAATAT+GGG - chr3.4:95158045-95158064 None:intergenic 35.0%
! GACATTTTCTGCAGTTGATT+TGG - chr3.4:95159830-95159849 None:intergenic 35.0%
! GCTTATAATGGAGTTTAGAG+GGG + chr3.4:95157139-95157158 MS.gene031223:intron 35.0%
! GTCAGGGGTTAATCATTTTA+TGG - chr3.4:95157829-95157848 None:intergenic 35.0%
! TATTCTGGTTATGGATCTTC+TGG + chr3.4:95155993-95156012 MS.gene031223:CDS 35.0%
! TTCTGATTCGTCTTACACTT+CGG + chr3.4:95155917-95155936 MS.gene031223:intron 35.0%
!! ACGTTAATTTGTGAATGCTC+CGG + chr3.4:95155398-95155417 MS.gene031223:intron 35.0%
!! CGCTTTAAGAATCCATAATC+TGG - chr3.4:95158140-95158159 None:intergenic 35.0%
!! GGAATATGCTTGCTTGTTTT+GGG - chr3.4:95156592-95156611 None:intergenic 35.0%
!! TTTTGCATTTTAGCCTTCCT+TGG + chr3.4:95157712-95157731 MS.gene031223:intron 35.0%
!!! GAATATGCTTGCTTGTTTTG+GGG - chr3.4:95156591-95156610 None:intergenic 35.0%
!!! TGTTTTAGCCTGTTGAATGT+AGG + chr3.4:95158298-95158317 MS.gene031223:intron 35.0%
AAAACTAGATTGAGGGTCAG+GGG - chr3.4:95157844-95157863 None:intergenic 40.0%
AAAATCGGAAGCGGTTCATT+TGG + chr3.4:95155175-95155194 MS.gene031223:intron 40.0%
AAAGTAAGACGCAAACTCCA+CGG - chr3.4:95158084-95158103 None:intergenic 40.0%
AACTCAGAAAAGTCCGGAAA+AGG - chr3.4:95157277-95157296 None:intergenic 40.0%
AGAAGAAATCCAATGGCAGT+CGG - chr3.4:95159615-95159634 None:intergenic 40.0%
AGCTAGTACGAATCAGCATT+AGG - chr3.4:95155741-95155760 None:intergenic 40.0%
ATGAATCAGTGGTTACCATC+TGG - chr3.4:95156092-95156111 None:intergenic 40.0%
ATTCCAACTATGAGATGGTG+CGG + chr3.4:95155952-95155971 MS.gene031223:CDS 40.0%
CAAACCTAGGTCGTGTATTT+GGG + chr3.4:95159878-95159897 MS.gene031223:CDS 40.0%
CAATGATAAAACCTCTCAGG+AGG - chr3.4:95157991-95158010 None:intergenic 40.0%
CACATTTGGACGATCAAGAT+TGG - chr3.4:95159509-95159528 None:intergenic 40.0%
CTCAACTGATTAGGGTTGAA+AGG + chr3.4:95155492-95155511 MS.gene031223:intron 40.0%
CTTTGACCTACATGAATACC+TGG + chr3.4:95157891-95157910 MS.gene031223:intron 40.0%
GAAGAAATTCGCCGTAAAGA+AGG - chr3.4:95159934-95159953 None:intergenic 40.0%
GAAGTTATCAACTTCCACTG+AGG + chr3.4:95157788-95157807 MS.gene031223:CDS 40.0%
GAATCCAGCTGCTTGAAATA+TGG - chr3.4:95159912-95159931 None:intergenic 40.0%
GCAAGTTGCAATACTCACTT+AGG + chr3.4:95157425-95157444 MS.gene031223:CDS 40.0%
GCAATCCAGATATGAATCAG+TGG - chr3.4:95156103-95156122 None:intergenic 40.0%
GCATCCACAACTATTGTATG+AGG + chr3.4:95155797-95155816 MS.gene031223:CDS 40.0%
GGAGATGACCATAATAAGTG+TGG + chr3.4:95157101-95157120 MS.gene031223:intron 40.0%
GGTCTTTCTTAGTTGAACAG+CGG - chr3.4:95159368-95159387 None:intergenic 40.0%
GTGGTATTCCAACTATGAGA+TGG + chr3.4:95155947-95155966 MS.gene031223:CDS 40.0%
GTGGTTGTGGAAAAACATAC+AGG + chr3.4:95159013-95159032 MS.gene031223:CDS 40.0%
TAATGCCTCCTACATTCAAC+AGG - chr3.4:95158309-95158328 None:intergenic 40.0%
TAATTTCTTCCGACTGCCAT+TGG + chr3.4:95159603-95159622 MS.gene031223:intron 40.0%
TACTCTATTCTCGAAAGCTG+TGG - chr3.4:95156327-95156346 None:intergenic 40.0%
TATTCCCAAATACACGACCT+AGG - chr3.4:95159885-95159904 None:intergenic 40.0%
TCAAACCTAGGTCGTGTATT+TGG + chr3.4:95159877-95159896 MS.gene031223:CDS 40.0%
TGTAGGAGAAGAAGAGAACA+AGG + chr3.4:95155775-95155794 MS.gene031223:intron 40.0%
TTAGGGTTGAAAGGAGTTAG+AGG + chr3.4:95155501-95155520 MS.gene031223:intron 40.0%
TTCACTTGGAAGTTGGAACT+TGG + chr3.4:95159324-95159343 MS.gene031223:intron 40.0%
TTGGCCTCATACAATAGTTG+TGG - chr3.4:95155804-95155823 None:intergenic 40.0%
TTGGGTAGCTCAACTGATTA+GGG + chr3.4:95155484-95155503 MS.gene031223:intron 40.0%
TTGTTCTCAAGACCACATGT+AGG - chr3.4:95158456-95158475 None:intergenic 40.0%
TTTAGCCTGTTGAATGTAGG+AGG + chr3.4:95158301-95158320 MS.gene031223:intron 40.0%
TTTGATGTTAGCAGACCAGA+TGG + chr3.4:95156074-95156093 MS.gene031223:CDS 40.0%
TTTGGGTAGCTCAACTGATT+AGG + chr3.4:95155483-95155502 MS.gene031223:intron 40.0%
! AGTAGCTACCTTGATGATCA+GGG - chr3.4:95155540-95155559 None:intergenic 40.0%
! ATGGTCTAGCTTGCATTTAC+TGG + chr3.4:95158848-95158867 MS.gene031223:intron 40.0%
! CGTCTTACACTTCGGATTTT+AGG + chr3.4:95155925-95155944 MS.gene031223:intron 40.0%
! CGTGATGATTTGGAGTCTAT+TGG + chr3.4:95157545-95157564 MS.gene031223:CDS 40.0%
! CTTACACTTCGGATTTTAGG+TGG + chr3.4:95155928-95155947 MS.gene031223:intron 40.0%
! GCTTCTGAGAACAAGGAATA+TGG - chr3.4:95158046-95158065 None:intergenic 40.0%
! GTATGTTTTTCCACAACCAC+TGG - chr3.4:95159013-95159032 None:intergenic 40.0%
! GTTGCGTCTGCTGATATTTT+AGG - chr3.4:95158768-95158787 None:intergenic 40.0%
! GTTGGCGGAAAGTTTAAGAT+TGG + chr3.4:95155148-95155167 MS.gene031223:CDS 40.0%
! TAGGGTTTCAGAGTTGTTTC+TGG + chr3.4:95158636-95158655 MS.gene031223:intron 40.0%
! TAGTAGCTACCTTGATGATC+AGG - chr3.4:95155541-95155560 None:intergenic 40.0%
! TCGGACTAGGAAAAAGATAC+CGG + chr3.4:95156563-95156582 MS.gene031223:CDS 40.0%
! TTTGAGATGAGACCTACATG+TGG + chr3.4:95158441-95158460 MS.gene031223:intron 40.0%
!! AGTAGTACTGGTACACATCA+AGG - chr3.4:95156965-95156984 None:intergenic 40.0%
!! ATAGGAGCATTTCCTACAAG+AGG - chr3.4:95156243-95156262 None:intergenic 40.0%
!! CAACTCTGAAACCCTAAGAT+TGG - chr3.4:95158632-95158651 None:intergenic 40.0%
!! CGTCTGCTGATATTTTAGGA+TGG - chr3.4:95158764-95158783 None:intergenic 40.0%
!! GGTAACCACTGATTCATATC+TGG + chr3.4:95156095-95156114 MS.gene031223:intron 40.0%
!!! AGAGGGGGTATTTTGTGAAA+TGG + chr3.4:95157155-95157174 MS.gene031223:intron 40.0%
AAGTAAGACGCAAACTCCAC+GGG - chr3.4:95158083-95158102 None:intergenic 45.0%
ACTAGGAACAGCACTAGGTA+CGG - chr3.4:95158969-95158988 None:intergenic 45.0%
ACTCCCATATTTCAAGCAGC+TGG + chr3.4:95159905-95159924 MS.gene031223:CDS 45.0%
AGGAAATGCTCCTATCCACA+GGG + chr3.4:95156248-95156267 MS.gene031223:intron 45.0%
AGTATGAGGGCGAGAAGAAA+AGG - chr3.4:95157873-95157892 None:intergenic 45.0%
ATAAAACCTCTCAGGAGGAG+GGG - chr3.4:95157986-95158005 None:intergenic 45.0%
ATTGGTCGCAAAATCGGAAG+CGG + chr3.4:95155166-95155185 MS.gene031223:CDS 45.0%
CAATGATCCGTCCACTTCAT+CGG + chr3.4:95159798-95159817 MS.gene031223:CDS 45.0%
CATTGAAAGTCCCTGTGGAT+AGG - chr3.4:95156261-95156280 None:intergenic 45.0%
GATAAAACCTCTCAGGAGGA+GGG - chr3.4:95157987-95158006 None:intergenic 45.0%
GCAGCTGGATTCCTTCTTTA+CGG + chr3.4:95159920-95159939 MS.gene031223:CDS 45.0%
GCTTTCATTGAAAGTCCCTG+TGG - chr3.4:95156266-95156285 None:intergenic 45.0%
GTGAATGCTCCGGTAATCTA+AGG + chr3.4:95155408-95155427 MS.gene031223:intron 45.0%
TAGGAAATGCTCCTATCCAC+AGG + chr3.4:95156247-95156266 MS.gene031223:intron 45.0%
TCTGAAAGCTGTCACCAAAG+AGG + chr3.4:95157740-95157759 MS.gene031223:CDS 45.0%
TGATAAAACCTCTCAGGAGG+AGG - chr3.4:95157988-95158007 None:intergenic 45.0%
! ACCTAGGTTTGAAGTTCCTG+TGG - chr3.4:95159869-95159888 None:intergenic 45.0%
! AGGACCTTTTTGTCTTCTGC+GGG + chr3.4:95156028-95156047 MS.gene031223:CDS 45.0%
! CCTAGGTTTGAAGTTCCTGT+GGG - chr3.4:95159868-95159887 None:intergenic 45.0%
! CGGACTAGGAAAAAGATACC+GGG + chr3.4:95156564-95156583 MS.gene031223:CDS 45.0%
! GAGGACCTTTTTGTCTTCTG+CGG + chr3.4:95156027-95156046 MS.gene031223:CDS 45.0%
! GATGGACTCAAAGTGTCTAC+TGG + chr3.4:95157018-95157037 MS.gene031223:intron 45.0%
! GCTTTTTGCAGCCTCTGATA+TGG + chr3.4:95155294-95155313 MS.gene031223:intron 45.0%
! TCGCAAAGCTTCTGAGAACA+AGG - chr3.4:95158053-95158072 None:intergenic 45.0%
!! CATTTTAGCCTTCCTTGGCA+GGG + chr3.4:95157717-95157736 MS.gene031223:intron 45.0%
!! GTATCGGGTTTGATGGGTTT+GGG + chr3.4:95155466-95155485 MS.gene031223:intron 45.0%
!! TGTATCGGGTTTGATGGGTT+TGG + chr3.4:95155465-95155484 MS.gene031223:intron 45.0%
ACAGCACTAGGAACAGCACT+AGG - chr3.4:95158974-95158993 None:intergenic 50.0%
ATCAGCAGACGCAACAGACA+AGG + chr3.4:95158773-95158792 MS.gene031223:CDS 50.0%
CAGTCTACAACCAGTGGTTG+TGG + chr3.4:95159000-95159019 MS.gene031223:CDS 50.0%
CCCACAGGAACTTCAAACCT+AGG + chr3.4:95159865-95159884 MS.gene031223:CDS 50.0%
CGTGAGTTGTTCACTCGTGA+AGG + chr3.4:95158167-95158186 MS.gene031223:CDS 50.0%
CTCTGATATGGACACCTCTG+AGG + chr3.4:95155306-95155325 MS.gene031223:CDS 50.0%
GCAAAGTCGCCGTGATGATT+TGG + chr3.4:95157535-95157554 MS.gene031223:CDS 50.0%
GCTTTGCGAATCATATCCCG+TGG + chr3.4:95158064-95158083 MS.gene031223:CDS 50.0%
GTACCGCACCATCTCATAGT+TGG - chr3.4:95155958-95155977 None:intergenic 50.0%
TGAGGTCGTTGCCGTCAAAA+TGG + chr3.4:95155324-95155343 MS.gene031223:CDS 50.0%
TGCTCCCGCAGAAGACAAAA+AGG - chr3.4:95156035-95156054 None:intergenic 50.0%
TTAGGCTGCACACGCACATT+TGG - chr3.4:95159523-95159542 None:intergenic 50.0%
TTTGGGCAAAGCCGATGAAG+TGG - chr3.4:95159812-95159831 None:intergenic 50.0%
! ACCACTGGTTGTAGACTGCT+AGG - chr3.4:95158998-95159017 None:intergenic 50.0%
! ATGAGATGGTGCGGTACTGA+TGG + chr3.4:95155961-95155980 MS.gene031223:CDS 50.0%
!! CTCAGAGGTGTCCATATCAG+AGG - chr3.4:95155308-95155327 None:intergenic 50.0%
!! GCATTTTAGCCTTCCTTGGC+AGG + chr3.4:95157716-95157735 MS.gene031223:intron 50.0%
ACAGCTTTCAGACCCTGCCA+AGG - chr3.4:95157732-95157751 None:intergenic 55.0%
AGACTGCTAGGCACAGCACT+AGG - chr3.4:95158986-95159005 None:intergenic 55.0%
CTTTCAGACCCTGCCAAGGA+AGG - chr3.4:95157728-95157747 None:intergenic 55.0%
GAAGTTCCTGTGGGCCTTTC+AGG - chr3.4:95159859-95159878 None:intergenic 55.0%
GCACTAGGTACGGCATCTGA+AGG - chr3.4:95158959-95158978 None:intergenic 55.0%
GCCTAGCAGTCTACAACCAG+TGG + chr3.4:95158994-95159013 MS.gene031223:CDS 55.0%
GGCAAAGCCGATGAAGTGGA+CGG - chr3.4:95159808-95159827 None:intergenic 55.0%
TCTAAGCCTGAAAGGCCCAC+AGG + chr3.4:95159850-95159869 MS.gene031223:CDS 55.0%
TTTGACGGCAACGACCTCAG+AGG - chr3.4:95155323-95155342 None:intergenic 55.0%
!! GGATCTTCTGGGACGTAGTC+TGG + chr3.4:95156005-95156024 MS.gene031223:CDS 55.0%
!! TCTTCTGGGACGTAGTCTGG+AGG + chr3.4:95156008-95156027 MS.gene031223:CDS 55.0%
!!! GCTTGCTTGTTTTGGGGTCC+CGG - chr3.4:95156585-95156604 None:intergenic 55.0%
AGTTAGCCCCTCCTCCTGAG+AGG + chr3.4:95157977-95157996 MS.gene031223:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 95155136 95159963 95155136 ID=MS.gene031223
chr3.4 mRNA 95155136 95159963 95155136 ID=MS.gene031223.t1;Parent=MS.gene031223
chr3.4 exon 95155136 95155187 95155136 ID=MS.gene031223.t1.exon1;Parent=MS.gene031223.t1
chr3.4 CDS 95155136 95155187 95155136 ID=cds.MS.gene031223.t1;Parent=MS.gene031223.t1
chr3.4 exon 95155305 95155345 95155305 ID=MS.gene031223.t1.exon2;Parent=MS.gene031223.t1
chr3.4 CDS 95155305 95155345 95155305 ID=cds.MS.gene031223.t1;Parent=MS.gene031223.t1
chr3.4 exon 95155780 95155849 95155780 ID=MS.gene031223.t1.exon3;Parent=MS.gene031223.t1
chr3.4 CDS 95155780 95155849 95155780 ID=cds.MS.gene031223.t1;Parent=MS.gene031223.t1
chr3.4 exon 95155947 95156095 95155947 ID=MS.gene031223.t1.exon4;Parent=MS.gene031223.t1
chr3.4 CDS 95155947 95156095 95155947 ID=cds.MS.gene031223.t1;Parent=MS.gene031223.t1
chr3.4 exon 95156330 95156425 95156330 ID=MS.gene031223.t1.exon5;Parent=MS.gene031223.t1
chr3.4 CDS 95156330 95156425 95156330 ID=cds.MS.gene031223.t1;Parent=MS.gene031223.t1
chr3.4 exon 95156547 95156617 95156547 ID=MS.gene031223.t1.exon6;Parent=MS.gene031223.t1
chr3.4 CDS 95156547 95156617 95156547 ID=cds.MS.gene031223.t1;Parent=MS.gene031223.t1
chr3.4 exon 95157391 95157452 95157391 ID=MS.gene031223.t1.exon7;Parent=MS.gene031223.t1
chr3.4 CDS 95157391 95157452 95157391 ID=cds.MS.gene031223.t1;Parent=MS.gene031223.t1
chr3.4 exon 95157534 95157597 95157534 ID=MS.gene031223.t1.exon8;Parent=MS.gene031223.t1
chr3.4 CDS 95157534 95157597 95157534 ID=cds.MS.gene031223.t1;Parent=MS.gene031223.t1
chr3.4 exon 95157725 95157809 95157725 ID=MS.gene031223.t1.exon9;Parent=MS.gene031223.t1
chr3.4 CDS 95157725 95157809 95157725 ID=cds.MS.gene031223.t1;Parent=MS.gene031223.t1
chr3.4 exon 95158062 95158188 95158062 ID=MS.gene031223.t1.exon10;Parent=MS.gene031223.t1
chr3.4 CDS 95158062 95158188 95158062 ID=cds.MS.gene031223.t1;Parent=MS.gene031223.t1
chr3.4 exon 95158731 95158813 95158731 ID=MS.gene031223.t1.exon11;Parent=MS.gene031223.t1
chr3.4 CDS 95158731 95158813 95158731 ID=cds.MS.gene031223.t1;Parent=MS.gene031223.t1
chr3.4 exon 95158956 95159034 95158956 ID=MS.gene031223.t1.exon12;Parent=MS.gene031223.t1
chr3.4 CDS 95158956 95159034 95158956 ID=cds.MS.gene031223.t1;Parent=MS.gene031223.t1
chr3.4 exon 95159464 95159591 95159464 ID=MS.gene031223.t1.exon13;Parent=MS.gene031223.t1
chr3.4 CDS 95159464 95159591 95159464 ID=cds.MS.gene031223.t1;Parent=MS.gene031223.t1
chr3.4 exon 95159790 95159963 95159790 ID=MS.gene031223.t1.exon14;Parent=MS.gene031223.t1
chr3.4 CDS 95159790 95159963 95159790 ID=cds.MS.gene031223.t1;Parent=MS.gene031223.t1
Gene Sequence

>MS.gene031223

ATGGAGTGGGTCGTTGGCGGAAAGTTTAAGATTGGTCGCAAAATCGGAAGCGGTTCATTTGGTGAAATTTATATAGGTAATTTATTATTATTCATTTCTATTTCATTTATTTGTATTGTTCTATTCAATATTCATATGCGTATGCTGATTATCTTGTTGCTTTTTGCAGCCTCTGATATGGACACCTCTGAGGTCGTTGCCGTCAAAATGGTTTGTTTCTTTCTTTCTTTTTCTTTCATTTCCCATCTCTTTATCATTCATCACGTTAATTTGTGAATGCTCCGGTAATCTAAGGAATAGATCATTTTATCCTAATGAGATCAACATTTTGTATCGGGTTTGATGGGTTTGGGTAGCTCAACTGATTAGGGTTGAAAGGAGTTAGAGGATCCGAGTTTAAACCCTGATCATCAAGGTAGCTACTAATTATTAAGAAATGAATGTAGCTTGATAACATGAAATTAGGGATATGTTTTTGGATATGCATATAGTGAATAAATCACTACAAGTATAAACTTATACTTGCTTGCTAGGTGTAAGCTATGACCTTTATTTTTTACACACTTTCATATTCAATTGCTCAACAACTATTGTGTACAAGGCCTAATGCTGATTCGTACTAGCTACATTTCTTTATTTTGTAGGAGAAGAAGAGAACAAGGCATCCACAACTATTGTATGAGGCCAAATTATACAGTCTTCTCCAAGGAGAAAGTAAGTTATAAAAGAAGCATTTGGGTATATTTGGATCTCATATGGAAAAGGCTATGTTACTTGTTTTTTCTGATTCGTCTTACACTTCGGATTTTAGGTGGTATTCCAACTATGAGATGGTGCGGTACTGATGGAGATCATAATATTCTGGTTATGGATCTTCTGGGACGTAGTCTGGAGGACCTTTTTGTCTTCTGCGGGAGCAAGTTTACTTTAAAAACAGTTTTGATGTTAGCAGACCAGATGGTAACCACTGATTCATATCTGGATTGCTTGCTTTATTTTTCAATTGGCATCATTAGTTCCTTGATGATATTAAATATGGCTTTTGGAAATAACTATCATGTTTGTTGCCTATCAATATAGTAGCAGTTTTATATCGAAAAGTTACCTCTTGTAGGAAATGCTCCTATCCACAGGGACTTTCAATGAAAGCACATTAATGTCAGTTTATTTCTGCTTTATTGTACTTGACCACAGCTTTCGAGAATAGAGTACATGCATTCCAAGGGATTTTTACATAGAGACATCAAACCAGATAACTTCCTAATGGGTATTAGGAGAAAATCAAGTCAGGTAAAATCATCTAAATTCATTATCTTCACTGGCTAATTATGTTGATAATTTTCCCGTCCCATAATTCCTTTTATGTTTCATATGTCTTACATTTTCTTTCTGCAATTTGTTACATTTATAGGTTTATATTATTGATTTCGGACTAGGAAAAAGATACCGGGACCCCAAAACAAGCAAGCATATTCCTTATAGGTATATTTTGTTGTTTAATTTTAATTATATTTCTAATCTTTTATTATGGATCATGTTTTTACTTGTTATAAGGTTTTCTTGTGTCCTAAAAATACTTGATTTGTTTACTTTTCTATTTACAAAAGTTCTAGAGGTTTGACCACATGAAACCAGATTGTTTTAATGTCACACATGGAGTAAAAAAAAAAAAAATATATGAGAAGATAAATTGAAAGTTGATATTAATTATTCTTCATTGGATAACAGTTAATAAAGGTATTCAATTAAGTTTTCTATATTTCAAATCTTATAATTACCAAAAACTTCTGTAACTGGTGTGATCATTGCCTATTTTCTTATGGCATCCTTGATGTGTACCAGTACTACTGTGCAGTTATAAGCAAAAAAAATGTCTAAATTTGATGGACTCAAAGTGTCTACTGGTGTGATCATTTAATGTTACTATTACAAAAACACCCTTACGTTAATACTTTAATGTTGTGAGGAGATGACCATAATAAGTGTGGAAGTAGGTATTTTTTGCTTATAATGGAGTTTAGAGGGGGTATTTTGTGAAATGGTCTCTCATTTTTTTTTTTTTTTTGTAAATTAAATGTACATTGCTGTTTATCAATAGAGAGTCTTCCAACTTGTAATCTGTGTAATCTCAAATAATTCCTTTTCCGGACTTTTCTGAGTTCTGATTGTTTCATTCTCACTGCTACTTGTGATTTGCTAGTTTAACTAGTCAAGTTAATGGTCCCTAATGTTTTGACCTTGATAAACTTATACAGAGAGAATAAAAGTTTAACAGGGACGGCACGATATGCAAGTTGCAATACTCACTTAGGAATCGGTACGTAGAAATAACTTCTCCTTCTTTACAGCTAAGCTTGTAACCCACAAATTTCATTCTATTTTGGTTTAATTTATTCAGAGCAAAGTCGCCGTGATGATTTGGAGTCTATTGGCTATGTCCTTATGTACTTCTTAAGAGGAAGGTATGTTTCTTCCCATTCATTGTAATTTTCTTACATTTTGAATTTTAAAAAATGGTGCATATGAGTATCAATTGCACATTCTTTTTAGGTAAATTTAGGGCTTGACTATATGGTTTTTGCATTTTAGCCTTCCTTGGCAGGGTCTGAAAGCTGTCACCAAAGAGGAAAAATATGACAAGATTCGTGAGAAGAAGTTATCAACTTCCACTGAGGTATACATTTTCAATTCCATAAAATGATTAACCCCTGACCCTCAATCTAGTTTTTAATTTCCTTTTCTTCTCGCCCTCATACTTTGACCTACATGAATACCTGGAACTATTGACGAAACAATATTAAGAGCTTTTAAGGATTGCTATTACTGGATTTATCAAATTTTAGTTAGCCCCTCCTCCTGAGAGGTTTTATCATTGAAGTGTTTTTGTTACTCAGAAGTTTAATGAACCCATATTCCTTGTTCTCAGAAGCTTTGCGAATCATATCCCGTGGAGTTTGCGTCTTACTTTCATTATTGTCGCTCCTTGACATTTGATCAAGATCCAGATTATGGATTCTTAAAGCGTCTGTTTCGTGAGTTGTTCACTCGTGAAGGTATTGACTGCTTTTTTATCTTATACTTGATTTTAAGTAATTACTGTCAATTGGACATATAGGATATATGACATTGTTTGATGATATGATAATTTGCTTATTAGTTGGTTGTTTTAGCCTGTTGAATGTAGGAGGCATTATAAATGACTTCCACTAAGTATTTAACCTTTCTTCTTTCTCCTTTAGTTATGCAAATTTTGTGCCAGAATATCTCTACTTAAGCACATACTGCATACAGTACATAGGTATACGTTTGAGATGAGACCTACATGTGGTCTTGAGAACAAAGCCAACTATCTAACATTTTATGATTTTATTGTTTTTCATCCATTACTCTATATCCAAAAATTCATGTTTTGGAAATTTTATGAATTAGTTCATTAATTCTTCATTTGTGTTTGCTTGGAAATAAATGATTTAGCTGTATCATGTACTAGTAACCAATCTTAGGGTTTCAGAGTTGTTTCTGGTAGCCTCTTGTGTTGTATTTATCTTCTCCCCCGATGTAATAAGAAGTTTATTTGGCTGAATTTAATGAGCAGGATATGACTATGACAATTTATTCGACTGGACCATCCTAAAATATCAGCAGACGCAACAGACAAGGAGACAAAAGCAATCATCGGTTAGTATTTTATTTTGAACCTTTAAACATTTTTATGGTCTAGCTTGCATTTACTGGAATGCATATGGATTGTCTGATAGCCCGATTATTAAACTTTCCTGATTTTATTCTCTTCCTCACTTGAATCAATGACTATTTGCAGCCTTCAGATGCCGTACCTAGTGCTGTTCCTAGTGCTGTGCCTAGCAGTCTACAACCAGTGGTTGTGGAAAAACATACAGGTAACTTCAGTCTTCTTATGTTCATACAATGAGGTTAAAACTTGAACGAATTCTGTTCAATTGTGGGAGATTTTTCCTAGATAATGTATATTGAAGTGATTTGCTAGATGAGATTTTTATTTTCCAGTAGAATGAGTTAGAATTTAAAGTTACATTTTAATGCTCATTGCAAAACGGAAAAAAGGCAATAGTTTCTATCTTAATATAAGCTTCTGATGTACAAAGAATTAAGATAGTTGCCAAGATTGACAGATATTTACCAACAAATTCCTTGTTATTATTATTATTTTTCACTTGGAAGTTGGAACTTGGAAGTTTTGCTTTGCTGTACCGCTGTTCAACTAAGAAAGACCAAGTTTGCAGTATAGTTGATTAATGCTGTCTACAGATTACATCCTGATGATGTACATGTCTTAATTTCCTTTTCAGGAATCAATAATTCACCTCAAGTTACTGTAACAAAACTGCTAACCAATCTTGATCGTCCAAATGTGCGTGTGCAGCCTAAGCCATCCAATCTAAAGAATCTAAATGCTAAGAATCATACGGGAAAACATGTAAGTCACAGTAATTTCTTCCGACTGCCATTGGATTTCTTCTTAATTTTACCTCTATATCCTCTATTAATTGCTAAGACATGGTGGCGTCACTTCTGTCGTCATGTTTGTGCTGTTAGTTCAATCACAAAGATATTTTGTTTTGATTTTTTTTTACTTGGCTGAAGAAATTCAACTGATTGAGATAAATTTGTGCAGAATGTGAACAATGATCCGTCCACTTCATCGGCTTTGCCCAAATCAACTGCAGAAAATGTCTCTAAGCCTGAAAGGCCCACAGGAACTTCAAACCTAGGTCGTGTATTTGGGAATAACTCCCATATTTCAAGCAGCTGGATTCCTTCTTTACGGCGAATTTCTTCTACCAAATAG

Protein sequence

>MS.gene031223.t1

MEWVVGGKFKIGRKIGSASDMDTSEVVAVKMEKKRTRHPQLLYEAKLYSLLQGESGIPTMRWCGTDGDHNILVMDLLGRSLEDLFVFCGSKFTLKTVLMLADQMLSRIEYMHSKGFLHRDIKPDNFLMGIRRKSSQVYIIDFGLGKRYRDPKTSKHIPYRENKSLTGTARYASCNTHLGIEQSRRDDLESIGYVLMYFLRGSLPWQGLKAVTKEEKYDKIREKKLSTSTEKLCESYPVEFASYFHYCRSLTFDQDPDYGFLKRLFRELFTREGYDYDNLFDWTILKYQQTQQTRRQKQSSPSDAVPSAVPSAVPSSLQPVVVEKHTGINNSPQVTVTKLLTNLDRPNVRVQPKPSNLKNLNAKNHTGKHNVNNDPSTSSALPKSTAENVSKPERPTGTSNLGRVFGNNSHISSSWIPSLRRISSTK