Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031243.t1 | AES73877.1 | 88.1 | 328 | 26 | 5 | 1 | 325 | 1 | 318 | 2.90E-146 | 528.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031243.t1 | O82632 | 48.3 | 317 | 119 | 8 | 30 | 325 | 16 | 308 | 9.0e-64 | 245.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031243.t1 | G7J3H0 | 88.1 | 328 | 26 | 5 | 1 | 325 | 1 | 318 | 2.1e-146 | 528.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene031243.t1 | TF | C2C2-GATA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031243.t1 | MTR_3g109760 | 91.768 | 328 | 14 | 5 | 1 | 325 | 1 | 318 | 0.0 | 540 |
| MS.gene031243.t1 | MTR_1g006650 | 52.857 | 350 | 122 | 10 | 6 | 325 | 8 | 344 | 8.51e-108 | 318 |
| MS.gene031243.t1 | MTR_8g013950 | 45.628 | 366 | 134 | 15 | 1 | 325 | 1 | 342 | 2.42e-80 | 248 |
| MS.gene031243.t1 | MTR_4g071590 | 36.577 | 298 | 144 | 11 | 1 | 283 | 13 | 280 | 4.95e-43 | 150 |
| MS.gene031243.t1 | MTR_4g471590 | 36.577 | 298 | 144 | 11 | 1 | 283 | 13 | 280 | 4.95e-43 | 150 |
| MS.gene031243.t1 | MTR_8g076340 | 38.516 | 283 | 131 | 10 | 19 | 284 | 32 | 288 | 1.22e-42 | 149 |
| MS.gene031243.t1 | MTR_3g117380 | 39.560 | 273 | 142 | 11 | 19 | 284 | 43 | 299 | 4.73e-38 | 137 |
| MS.gene031243.t1 | MTR_1g094930 | 37.165 | 261 | 96 | 8 | 83 | 278 | 49 | 306 | 4.47e-37 | 135 |
| MS.gene031243.t1 | MTR_6g032830 | 37.662 | 231 | 83 | 7 | 104 | 280 | 35 | 258 | 1.57e-36 | 132 |
| MS.gene031243.t1 | MTR_7g085410 | 41.706 | 211 | 84 | 6 | 104 | 278 | 45 | 252 | 2.72e-35 | 129 |
| MS.gene031243.t1 | MTR_5g021340 | 40.260 | 231 | 92 | 7 | 90 | 284 | 150 | 370 | 5.14e-35 | 131 |
| MS.gene031243.t1 | MTR_1g094930 | 57.009 | 107 | 44 | 2 | 173 | 278 | 106 | 211 | 1.77e-34 | 126 |
| MS.gene031243.t1 | MTR_1g046680 | 78.873 | 71 | 15 | 0 | 213 | 283 | 171 | 241 | 1.76e-33 | 124 |
| MS.gene031243.t1 | MTR_5g007600 | 53.211 | 109 | 51 | 0 | 175 | 283 | 220 | 328 | 5.38e-33 | 124 |
| MS.gene031243.t1 | MTR_5g007600 | 49.206 | 126 | 49 | 2 | 153 | 277 | 109 | 220 | 6.29e-30 | 116 |
| MS.gene031243.t1 | MTR_1g116010 | 73.529 | 68 | 18 | 0 | 211 | 278 | 161 | 228 | 1.23e-29 | 114 |
| MS.gene031243.t1 | MTR_2g094600 | 75.385 | 65 | 16 | 0 | 214 | 278 | 216 | 280 | 3.15e-29 | 114 |
| MS.gene031243.t1 | MTR_4g058910 | 62.963 | 81 | 30 | 0 | 214 | 294 | 314 | 394 | 3.97e-29 | 115 |
| MS.gene031243.t1 | MTR_7g446110 | 55.696 | 79 | 32 | 2 | 203 | 280 | 175 | 251 | 2.23e-22 | 94.4 |
| MS.gene031243.t1 | MTR_7g446070 | 53.947 | 76 | 31 | 1 | 199 | 274 | 121 | 192 | 1.22e-20 | 88.2 |
| MS.gene031243.t1 | MTR_7g445950 | 33.880 | 183 | 86 | 7 | 95 | 274 | 30 | 180 | 2.32e-20 | 87.4 |
| MS.gene031243.t1 | MTR_7g445980 | 66.071 | 56 | 18 | 1 | 218 | 272 | 37 | 92 | 3.14e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031243.t1 | AT4G32890 | 49.051 | 316 | 118 | 8 | 30 | 325 | 16 | 308 | 3.21e-87 | 264 |
| MS.gene031243.t1 | AT5G25830 | 47.175 | 354 | 131 | 11 | 2 | 325 | 4 | 331 | 2.38e-85 | 260 |
| MS.gene031243.t1 | AT3G60530 | 47.573 | 206 | 74 | 5 | 89 | 294 | 63 | 234 | 2.40e-51 | 170 |
| MS.gene031243.t1 | AT2G45050 | 47.465 | 217 | 76 | 7 | 89 | 291 | 65 | 257 | 1.92e-48 | 163 |
| MS.gene031243.t1 | AT4G36240 | 39.313 | 262 | 106 | 8 | 32 | 281 | 11 | 231 | 2.07e-38 | 136 |
| MS.gene031243.t1 | AT5G66320 | 40.079 | 252 | 109 | 5 | 76 | 294 | 87 | 329 | 1.31e-37 | 137 |
| MS.gene031243.t1 | AT5G66320 | 40.079 | 252 | 109 | 5 | 76 | 294 | 87 | 329 | 1.31e-37 | 137 |
| MS.gene031243.t1 | AT3G24050 | 77.941 | 68 | 15 | 0 | 213 | 280 | 193 | 260 | 4.57e-33 | 123 |
| MS.gene031243.t1 | AT1G08010 | 67.073 | 82 | 21 | 1 | 211 | 286 | 217 | 298 | 4.24e-32 | 122 |
| MS.gene031243.t1 | AT1G08010 | 67.073 | 82 | 21 | 1 | 211 | 286 | 217 | 298 | 4.24e-32 | 122 |
| MS.gene031243.t1 | AT1G08010 | 67.073 | 82 | 21 | 1 | 211 | 286 | 217 | 298 | 4.24e-32 | 122 |
| MS.gene031243.t1 | AT3G54810 | 75.000 | 68 | 17 | 0 | 214 | 281 | 229 | 296 | 1.02e-31 | 121 |
| MS.gene031243.t1 | AT3G54810 | 75.000 | 68 | 17 | 0 | 214 | 281 | 229 | 296 | 1.02e-31 | 121 |
| MS.gene031243.t1 | AT4G34680 | 43.011 | 186 | 73 | 7 | 99 | 283 | 96 | 249 | 2.03e-31 | 119 |
| MS.gene031243.t1 | AT4G34680 | 43.011 | 186 | 73 | 7 | 99 | 283 | 96 | 249 | 2.03e-31 | 119 |
| MS.gene031243.t1 | AT3G51080 | 73.913 | 69 | 18 | 0 | 214 | 282 | 221 | 289 | 4.04e-30 | 116 |
| MS.gene031243.t1 | AT1G08000 | 60.227 | 88 | 30 | 1 | 211 | 293 | 215 | 302 | 4.74e-30 | 116 |
| MS.gene031243.t1 | AT1G08000 | 60.227 | 88 | 30 | 1 | 211 | 293 | 215 | 302 | 4.74e-30 | 116 |
| MS.gene031243.t1 | AT3G45170 | 62.319 | 69 | 26 | 0 | 214 | 282 | 115 | 183 | 5.77e-26 | 102 |
| MS.gene031243.t1 | AT2G28340 | 68.254 | 63 | 20 | 0 | 216 | 278 | 193 | 255 | 1.15e-24 | 101 |
Find 93 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGATTCCTCAGCAAATT+TGG | 0.139979 | 3.4:+95368223 | None:intergenic |
| CTACATGAGGTGCGTGAAAT+CGG | 0.267854 | 3.4:+95367590 | None:intergenic |
| CACGCATTGCATAGTGTCTT+TGG | 0.290696 | 3.4:+95367846 | None:intergenic |
| ACAGTTGATATCTGGATTAA+AGG | 0.306992 | 3.4:-95368177 | MS.gene031243:CDS |
| CATAAGCTACAGTTGATATC+TGG | 0.309428 | 3.4:-95368185 | MS.gene031243:CDS |
| AAGGGCCGTCGGCAGAATTC+TGG | 0.309787 | 3.4:+95369811 | None:intergenic |
| CAGTGGCGCACCGGGCCATT+AGG | 0.332794 | 3.4:-95367870 | MS.gene031243:CDS |
| CATAGTGTCTTTGGACCTAA+TGG | 0.339675 | 3.4:+95367855 | None:intergenic |
| CACGTGTGCCTCCATGCAAC+TGG | 0.370780 | 3.4:-95368055 | MS.gene031243:CDS |
| GGGCCCTCATCATCTCCTTC+TGG | 0.374473 | 3.4:+95367709 | None:intergenic |
| ATTGTGGACAGAAGCTGGTT+TGG | 0.397002 | 3.4:+95370033 | None:intergenic |
| TTGCAACAATTGGTGTTGTT+GGG | 0.408578 | 3.4:+95367689 | None:intergenic |
| GTTGCAACAATTGGTGTTGT+TGG | 0.409369 | 3.4:+95367688 | None:intergenic |
| GACACTTGAGGGTGTATTGT+TGG | 0.425894 | 3.4:+95368107 | None:intergenic |
| TGCTTAGTCAACACAAATGT+TGG | 0.431309 | 3.4:+95367768 | None:intergenic |
| CATCACAGCATTATGTTTGA+AGG | 0.433831 | 3.4:-95367657 | MS.gene031243:CDS |
| TCTCTTTGATTTCTCTAATG+AGG | 0.434233 | 3.4:-95369946 | MS.gene031243:CDS |
| CGGCAAAAGCCCGTAGTAAA+CGG | 0.443499 | 3.4:-95368079 | MS.gene031243:CDS |
| TTCGAAAGTGGGGTCTTCAA+TGG | 0.445894 | 3.4:+95369917 | None:intergenic |
| TACATGAGGTGCGTGAAATC+GGG | 0.448275 | 3.4:+95367591 | None:intergenic |
| TTGCACCTTTCGATGTGAGT+TGG | 0.456005 | 3.4:+95367743 | None:intergenic |
| CTCCGGCGAACTCTCCGTTC+CGG | 0.462198 | 3.4:-95369787 | MS.gene031243:intron |
| ACGGAGAGTTCGCCGGAGAA+AGG | 0.464710 | 3.4:+95369792 | None:intergenic |
| AGATGTGGTGGTGGTGGTCA+TGG | 0.465812 | 3.4:+95368004 | None:intergenic |
| GTTTGTGGTGGAATTGTTGT+CGG | 0.468374 | 3.4:+95370010 | None:intergenic |
| GTGGTGGTGGTGGTCATGGT+TGG | 0.470501 | 3.4:+95368008 | None:intergenic |
| TTGCCGGGACAGACACTTGA+GGG | 0.471708 | 3.4:+95368096 | None:intergenic |
| ACAAATGTTGGGCTTGCTGC+AGG | 0.475199 | 3.4:+95367780 | None:intergenic |
| ATGATCTTGCGCAGCTAGAA+TGG | 0.476849 | 3.4:-95368250 | MS.gene031243:CDS |
| TCATCATCTCCTTCTGGCGT+CGG | 0.486176 | 3.4:+95367715 | None:intergenic |
| CGGAGAGTTCGCCGGAGAAA+GGG | 0.487872 | 3.4:+95369793 | None:intergenic |
| GCTTAGTCAACACAAATGTT+GGG | 0.498811 | 3.4:+95367769 | None:intergenic |
| AGCAGTGTTTACATTGTTTG+TGG | 0.499828 | 3.4:+95369995 | None:intergenic |
| TCTGCCGACGGCCCTTTCTC+CGG | 0.501462 | 3.4:-95369804 | MS.gene031243:CDS |
| GTGGGATTGGTTTCAAGAGG+AGG | 0.506926 | 3.4:+95369864 | None:intergenic |
| GTGGAATTGTTGTCGGATTG+TGG | 0.509048 | 3.4:+95370017 | None:intergenic |
| AGGAGGAGATTCTTCGAAAG+TGG | 0.514544 | 3.4:+95369905 | None:intergenic |
| GATGTTGTAGTTGCAACAAT+TGG | 0.517809 | 3.4:+95367679 | None:intergenic |
| ACACTTGAGGGTGTATTGTT+GGG | 0.518688 | 3.4:+95368108 | None:intergenic |
| AGACTCCACAGTGGCGCACC+GGG | 0.518894 | 3.4:-95367878 | MS.gene031243:CDS |
| AAGACTCCACAGTGGCGCAC+CGG | 0.525177 | 3.4:-95367879 | MS.gene031243:CDS |
| GAATCATTAGAGTTGGTAGG+AGG | 0.531077 | 3.4:+95369888 | None:intergenic |
| GCAAGAGCTCCGACGCCAGA+AGG | 0.533988 | 3.4:-95367724 | MS.gene031243:CDS |
| GTCGGATTGTGGACAGAAGC+TGG | 0.535564 | 3.4:+95370028 | None:intergenic |
| GGAGAATCATTAGAGTTGGT+AGG | 0.541668 | 3.4:+95369885 | None:intergenic |
| ATATCAACTGTAGCTTATGA+AGG | 0.545098 | 3.4:+95368189 | None:intergenic |
| AGGAGGAGAATCATTAGAGT+TGG | 0.548174 | 3.4:+95369881 | None:intergenic |
| GTCGACTCGTACCTGAGTAT+AGG | 0.562857 | 3.4:-95367803 | MS.gene031243:CDS |
| CACACGTGACCGTTTACTAC+GGG | 0.563431 | 3.4:+95368070 | None:intergenic |
| AATGGCCCGGTGCGCCACTG+TGG | 0.564107 | 3.4:+95367873 | None:intergenic |
| GGAGGAGATTCTTCGAAAGT+GGG | 0.565310 | 3.4:+95369906 | None:intergenic |
| TGTGGAGTCAGATACAAGTC+AGG | 0.567755 | 3.4:-95367825 | MS.gene031243:CDS |
| TACCGGAACGGAGAGTTCGC+CGG | 0.569597 | 3.4:+95369785 | None:intergenic |
| GACGCCAGAAGGAGATGATG+AGG | 0.570929 | 3.4:-95367713 | MS.gene031243:CDS |
| GAAGTGGGATTGGTTTCAAG+AGG | 0.577002 | 3.4:+95369861 | None:intergenic |
| AGAGATCTTCAACGATGAAG+TGG | 0.579783 | 3.4:+95369964 | None:intergenic |
| GTGAGAAGATGTGGTGGTGG+TGG | 0.580310 | 3.4:+95367998 | None:intergenic |
| GCACACGTGACCGTTTACTA+CGG | 0.581455 | 3.4:+95368069 | None:intergenic |
| AGGCGCGAAGTCCAGTTGCA+TGG | 0.582876 | 3.4:+95368044 | None:intergenic |
| TGTCTTTGGACCTAATGGCC+CGG | 0.587867 | 3.4:+95367860 | None:intergenic |
| GACCTCGGTGATGGAGGAGA+GGG | 0.591558 | 3.4:-95367930 | MS.gene031243:CDS |
| TTTGCCGGGACAGACACTTG+AGG | 0.592935 | 3.4:+95368095 | None:intergenic |
| ACACCCTCAAGTGTCTGTCC+CGG | 0.593472 | 3.4:-95368099 | MS.gene031243:CDS |
| AAAAGAGACCTCGGTGATGG+AGG | 0.595010 | 3.4:-95367936 | MS.gene031243:CDS |
| AATCAAGTAATCCTCACCGT+TGG | 0.595692 | 3.4:+95367629 | None:intergenic |
| AGAGTGAGAAGATGTGGTGG+TGG | 0.596239 | 3.4:+95367995 | None:intergenic |
| AAGTAATCCTCACCGTTGGA+TGG | 0.600786 | 3.4:+95367633 | None:intergenic |
| TATAATGGCACGTACCGGAA+CGG | 0.606350 | 3.4:+95369773 | None:intergenic |
| ACGCCAGAAGGAGATGATGA+GGG | 0.609091 | 3.4:-95367712 | MS.gene031243:CDS |
| AGACCTCGGTGATGGAGGAG+AGG | 0.609530 | 3.4:-95367931 | MS.gene031243:CDS |
| TTCGCCGGAGAAAGGGCCGT+CGG | 0.611125 | 3.4:+95369800 | None:intergenic |
| GCACTCCAACTCACATCGAA+AGG | 0.612333 | 3.4:-95367748 | MS.gene031243:CDS |
| AGTGTTTACATTGTTTGTGG+TGG | 0.618078 | 3.4:+95369998 | None:intergenic |
| CTTGCTGCAGGCCTATACTC+AGG | 0.624212 | 3.4:+95367792 | None:intergenic |
| ATCTTCAACGATGAAGTGGT+CGG | 0.624703 | 3.4:+95369968 | None:intergenic |
| ATCTTCTCACTCTGACACCA+TGG | 0.629511 | 3.4:-95367985 | MS.gene031243:CDS |
| TCGTGCCAGAATTCTGCCGA+CGG | 0.642132 | 3.4:-95369816 | MS.gene031243:CDS |
| GTCAGAGTGAGAAGATGTGG+TGG | 0.644152 | 3.4:+95367992 | None:intergenic |
| ATGTTTGAAGGACCATCCAA+CGG | 0.648434 | 3.4:-95367645 | MS.gene031243:CDS |
| CCAAAGCACCGTACTACATG+AGG | 0.651273 | 3.4:+95367577 | None:intergenic |
| CCACTGTGGAGTCTTATCAG+TGG | 0.652363 | 3.4:+95367887 | None:intergenic |
| ATGGATGTCCAAATTTGCTG+AGG | 0.653086 | 3.4:-95368231 | MS.gene031243:CDS |
| TGGTTGGAGAGAGAACTAGA+AGG | 0.657111 | 3.4:+95368024 | None:intergenic |
| CGCGAAGTCCAGTTGCATGG+AGG | 0.662375 | 3.4:+95368047 | None:intergenic |
| TACTTGATTCATCAACACGT+GGG | 0.670141 | 3.4:-95367615 | MS.gene031243:CDS |
| GGTGTCAGAGTGAGAAGATG+TGG | 0.671117 | 3.4:+95367989 | None:intergenic |
| TGAAGGACCATCCAACGGTG+AGG | 0.675304 | 3.4:-95367640 | MS.gene031243:CDS |
| AAGACACTATGCAATGCGTG+TGG | 0.676419 | 3.4:-95367843 | MS.gene031243:CDS |
| GAGGAGATTCTTCGAAAGTG+GGG | 0.692052 | 3.4:+95369907 | None:intergenic |
| TTACTTGATTCATCAACACG+TGG | 0.700709 | 3.4:-95367616 | MS.gene031243:CDS |
| GACCCTCTCCTCCATCACCG+AGG | 0.717630 | 3.4:+95367928 | None:intergenic |
| ATTCTGGCACGAATTGACGT+CGG | 0.752925 | 3.4:+95369827 | None:intergenic |
| CCACTGATAAGACTCCACAG+TGG | 0.837860 | 3.4:-95367887 | MS.gene031243:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTTAAAAAAAAATATAG+GGG | + | chr3.4:95368826-95368845 | None:intergenic | 10.0% |
| !! | CTATAGTTAAAAAAAAATAT+AGG | + | chr3.4:95368828-95368847 | None:intergenic | 10.0% |
| !! | TATTATTTATATACAACAAT+TGG | - | chr3.4:95367966-95367985 | MS.gene031243:CDS | 10.0% |
| !! | ATATAAAGTAAGAATTCTAA+TGG | - | chr3.4:95369128-95369147 | MS.gene031243:intron | 15.0% |
| !! | ATATTTGTAATAAAAGCTAA+GGG | + | chr3.4:95368874-95368893 | None:intergenic | 15.0% |
| !! | ATGTGACAAAATTAAAAATA+GGG | + | chr3.4:95368438-95368457 | None:intergenic | 15.0% |
| !! | TAGTTAAAAAAAAATATAGG+GGG | + | chr3.4:95368825-95368844 | None:intergenic | 15.0% |
| !! | TATATTTGTAATAAAAGCTA+AGG | + | chr3.4:95368875-95368894 | None:intergenic | 15.0% |
| !! | TATGTGACAAAATTAAAAAT+AGG | + | chr3.4:95368439-95368458 | None:intergenic | 15.0% |
| !!! | AAATAAAGAGAGTATTATTT+AGG | + | chr3.4:95368043-95368062 | None:intergenic | 15.0% |
| !!! | TATTATTTTTGTTTAGAGAA+GGG | + | chr3.4:95368913-95368932 | None:intergenic | 15.0% |
| !!! | TCATTTTTAAGATACTATAT+CGG | + | chr3.4:95369101-95369120 | None:intergenic | 15.0% |
| !!! | TCTTAAGATATACTTTTTTT+AGG | + | chr3.4:95369061-95369080 | None:intergenic | 15.0% |
| !!! | TTATTATTTTTGTTTAGAGA+AGG | + | chr3.4:95368914-95368933 | None:intergenic | 15.0% |
| !! | AGAAAATACATAACCTAATA+TGG | - | chr3.4:95369280-95369299 | MS.gene031243:intron | 20.0% |
| !! | TCTTAAGACAACAATTAAAA+AGG | - | chr3.4:95369073-95369092 | MS.gene031243:intron | 20.0% |
| !! | TTTCATAAGTATGACAATTA+TGG | + | chr3.4:95368232-95368251 | None:intergenic | 20.0% |
| !!! | ATTAGGTTATGTATTTTCTA+AGG | + | chr3.4:95369279-95369298 | None:intergenic | 20.0% |
| !!! | TTCTTTTTATACTCCATATT+AGG | + | chr3.4:95369296-95369315 | None:intergenic | 20.0% |
| !!! | TTTTTTGATTCAACGTTATT+TGG | + | chr3.4:95369494-95369513 | None:intergenic | 20.0% |
| ! | AATGGAACAGATAAAATTGT+AGG | + | chr3.4:95368006-95368025 | None:intergenic | 25.0% |
| ! | ATAAGAAAATGTGAGGTATA+TGG | - | chr3.4:95368534-95368553 | MS.gene031243:intron | 25.0% |
| ! | CAAAAGTAGAAAAATTGTCT+TGG | + | chr3.4:95368392-95368411 | None:intergenic | 25.0% |
| ! | TAAGAAAATGTGAGGTATAT+GGG | - | chr3.4:95368535-95368554 | MS.gene031243:intron | 25.0% |
| !! | CAAGACAATTTTTCTACTTT+TGG | - | chr3.4:95368390-95368409 | MS.gene031243:intron | 25.0% |
| !! | GAGTGAATTTTGAATTTCAA+GGG | - | chr3.4:95368565-95368584 | MS.gene031243:intron | 25.0% |
| !!! | ATAGTCTTTTATTTAGTCGT+GGG | - | chr3.4:95368509-95368528 | MS.gene031243:intron | 25.0% |
| !!! | TATAGTCTTTTATTTAGTCG+TGG | - | chr3.4:95368508-95368527 | MS.gene031243:intron | 25.0% |
| AAATGATTCCTCAGCAAATT+TGG | + | chr3.4:95369423-95369442 | None:intergenic | 30.0% | |
| ATATATATAATGGCACGTAC+CGG | + | chr3.4:95367878-95367897 | None:intergenic | 30.0% | |
| ATATCAACTGTAGCTTATGA+AGG | + | chr3.4:95369457-95369476 | None:intergenic | 30.0% | |
| ATCTGTTCCATTGAATTTGA+GGG | - | chr3.4:95368014-95368033 | MS.gene031243:CDS | 30.0% | |
| CACACATATTAAAGAAAAGC+AGG | + | chr3.4:95368154-95368173 | None:intergenic | 30.0% | |
| TATCTGTTCCATTGAATTTG+AGG | - | chr3.4:95368013-95368032 | MS.gene031243:CDS | 30.0% | |
| ! | ACAGTTGATATCTGGATTAA+AGG | - | chr3.4:95369466-95369485 | MS.gene031243:intron | 30.0% |
| ! | GGAGTGAATTTTGAATTTCA+AGG | - | chr3.4:95368564-95368583 | MS.gene031243:intron | 30.0% |
| ! | TCTCTTTGATTTCTCTAATG+AGG | - | chr3.4:95367697-95367716 | MS.gene031243:CDS | 30.0% |
| AAAATTAAAAATAGGGCCCC+GGG | + | chr3.4:95368431-95368450 | None:intergenic | 35.0% | |
| AGCAGTGTTTACATTGTTTG+TGG | + | chr3.4:95367651-95367670 | None:intergenic | 35.0% | |
| AGTGTTTACATTGTTTGTGG+TGG | + | chr3.4:95367648-95367667 | None:intergenic | 35.0% | |
| ATTGACGTCGGTGAAAAAAT+TGG | + | chr3.4:95367807-95367826 | None:intergenic | 35.0% | |
| ATTGGTTAAGCAGCTAAAAG+AGG | - | chr3.4:95368307-95368326 | MS.gene031243:intron | 35.0% | |
| CAAAATTAAAAATAGGGCCC+CGG | + | chr3.4:95368432-95368451 | None:intergenic | 35.0% | |
| CATCACAGCATTATGTTTGA+AGG | - | chr3.4:95369986-95370005 | MS.gene031243:CDS | 35.0% | |
| GAAAAAATTGGAAGTGGGAT+TGG | + | chr3.4:95367795-95367814 | None:intergenic | 35.0% | |
| GATGTTGTAGTTGCAACAAT+TGG | + | chr3.4:95369967-95369986 | None:intergenic | 35.0% | |
| GCTTAGTCAACACAAATGTT+GGG | + | chr3.4:95369877-95369896 | None:intergenic | 35.0% | |
| GTGGGAAATAAGAAAATGTG+AGG | - | chr3.4:95368527-95368546 | MS.gene031243:intron | 35.0% | |
| TACTTGATTCATCAACACGT+GGG | - | chr3.4:95370028-95370047 | MS.gene031243:CDS | 35.0% | |
| TAGGTTTCCCTCAAATTCAA+TGG | + | chr3.4:95368024-95368043 | None:intergenic | 35.0% | |
| TCGGTGAAAAAATTGGAAGT+GGG | + | chr3.4:95367800-95367819 | None:intergenic | 35.0% | |
| TGCTTAGTCAACACAAATGT+TGG | + | chr3.4:95369878-95369897 | None:intergenic | 35.0% | |
| TTACTTGATTCATCAACACG+TGG | - | chr3.4:95370027-95370046 | MS.gene031243:CDS | 35.0% | |
| TTGACTCAACATGTGTAGTT+AGG | - | chr3.4:95367932-95367951 | MS.gene031243:CDS | 35.0% | |
| ! | CATAAGCTACAGTTGATATC+TGG | - | chr3.4:95369458-95369477 | MS.gene031243:intron | 35.0% |
| !! | TTGCAACAATTGGTGTTGTT+GGG | + | chr3.4:95369957-95369976 | None:intergenic | 35.0% |
| !!! | TGAGGAATCATTTTCAAGTG+AGG | - | chr3.4:95369430-95369449 | MS.gene031243:intron | 35.0% |
| AAATTAAAAATAGGGCCCCG+GGG | + | chr3.4:95368430-95368449 | None:intergenic | 40.0% | |
| AATCAAGTAATCCTCACCGT+TGG | + | chr3.4:95370017-95370036 | None:intergenic | 40.0% | |
| AGAGATCTTCAACGATGAAG+TGG | + | chr3.4:95367682-95367701 | None:intergenic | 40.0% | |
| AGGAGGAGAATCATTAGAGT+TGG | + | chr3.4:95367765-95367784 | None:intergenic | 40.0% | |
| ATATCTTATGTTCGCCGTGT+AGG | + | chr3.4:95369238-95369257 | None:intergenic | 40.0% | |
| ATCTTCAACGATGAAGTGGT+CGG | + | chr3.4:95367678-95367697 | None:intergenic | 40.0% | |
| ATGTGAGGTATATGGGATAG+AGG | - | chr3.4:95368542-95368561 | MS.gene031243:intron | 40.0% | |
| ATGTTTGAAGGACCATCCAA+CGG | - | chr3.4:95369998-95370017 | MS.gene031243:CDS | 40.0% | |
| CATAGTGTCTTTGGACCTAA+TGG | + | chr3.4:95369791-95369810 | None:intergenic | 40.0% | |
| CCTTATGATACACACCTACA+CGG | - | chr3.4:95369221-95369240 | MS.gene031243:intron | 40.0% | |
| GTCGGTGAAAAAATTGGAAG+TGG | + | chr3.4:95367801-95367820 | None:intergenic | 40.0% | |
| TCTCCAAGAAAAAGAGACCT+CGG | - | chr3.4:95369698-95369717 | MS.gene031243:intron | 40.0% | |
| TGTGAGGTATATGGGATAGA+GGG | - | chr3.4:95368543-95368562 | MS.gene031243:intron | 40.0% | |
| ! | ACACTTGAGGGTGTATTGTT+GGG | + | chr3.4:95369538-95369557 | None:intergenic | 40.0% |
| ! | AGGTCTCTTTTTCTTGGAGA+GGG | + | chr3.4:95369698-95369717 | None:intergenic | 40.0% |
| ! | GGAGAATCATTAGAGTTGGT+AGG | + | chr3.4:95367761-95367780 | None:intergenic | 40.0% |
| ! | GTTTGTGGTGGAATTGTTGT+CGG | + | chr3.4:95367636-95367655 | None:intergenic | 40.0% |
| !! | ATGGATGTCCAAATTTGCTG+AGG | - | chr3.4:95369412-95369431 | MS.gene031243:intron | 40.0% |
| !! | GAATCATTAGAGTTGGTAGG+AGG | + | chr3.4:95367758-95367777 | None:intergenic | 40.0% |
| !! | GTTGCAACAATTGGTGTTGT+TGG | + | chr3.4:95369958-95369977 | None:intergenic | 40.0% |
| !!! | TTTCTTGGAGAGGGCTTTTT+TGG | + | chr3.4:95369689-95369708 | None:intergenic | 40.0% |
| AAGACACTATGCAATGCGTG+TGG | - | chr3.4:95369800-95369819 | MS.gene031243:CDS | 45.0% | |
| AAGTAATCCTCACCGTTGGA+TGG | + | chr3.4:95370013-95370032 | None:intergenic | 45.0% | |
| AGAAAAAGAGACCTCGGTGA+TGG | - | chr3.4:95369704-95369723 | MS.gene031243:intron | 45.0% | |
| AGGAGGAGATTCTTCGAAAG+TGG | + | chr3.4:95367741-95367760 | None:intergenic | 45.0% | |
| ATCTTCTCACTCTGACACCA+TGG | - | chr3.4:95369658-95369677 | MS.gene031243:intron | 45.0% | |
| ATGATCTTGCGCAGCTAGAA+TGG | - | chr3.4:95369393-95369412 | MS.gene031243:intron | 45.0% | |
| ATTCTGGCACGAATTGACGT+CGG | + | chr3.4:95367819-95367838 | None:intergenic | 45.0% | |
| ATTGTGGACAGAAGCTGGTT+TGG | + | chr3.4:95367613-95367632 | None:intergenic | 45.0% | |
| CACGCATTGCATAGTGTCTT+TGG | + | chr3.4:95369800-95369819 | None:intergenic | 45.0% | |
| CCGTGTAGGTGTGTATCATA+AGG | + | chr3.4:95369224-95369243 | None:intergenic | 45.0% | |
| CTACATGAGGTGCGTGAAAT+CGG | + | chr3.4:95370056-95370075 | None:intergenic | 45.0% | |
| GAGGAGATTCTTCGAAAGTG+GGG | + | chr3.4:95367739-95367758 | None:intergenic | 45.0% | |
| GGAGGAGATTCTTCGAAAGT+GGG | + | chr3.4:95367740-95367759 | None:intergenic | 45.0% | |
| GTGGAATTGTTGTCGGATTG+TGG | + | chr3.4:95367629-95367648 | None:intergenic | 45.0% | |
| TACATGAGGTGCGTGAAATC+GGG | + | chr3.4:95370055-95370074 | None:intergenic | 45.0% | |
| TATAATGGCACGTACCGGAA+CGG | + | chr3.4:95367873-95367892 | None:intergenic | 45.0% | |
| TGGATTCTTAACAAGTGCCC+CGG | - | chr3.4:95368410-95368429 | MS.gene031243:intron | 45.0% | |
| TGGTTGGAGAGAGAACTAGA+AGG | + | chr3.4:95369622-95369641 | None:intergenic | 45.0% | |
| TGTGGAGTCAGATACAAGTC+AGG | - | chr3.4:95369818-95369837 | MS.gene031243:CDS | 45.0% | |
| TTCGAAAGTGGGGTCTTCAA+TGG | + | chr3.4:95367729-95367748 | None:intergenic | 45.0% | |
| TTGCACCTTTCGATGTGAGT+TGG | + | chr3.4:95369903-95369922 | None:intergenic | 45.0% | |
| ! | GACACTTGAGGGTGTATTGT+TGG | + | chr3.4:95369539-95369558 | None:intergenic | 45.0% |
| ! | GAGGTCTCTTTTTCTTGGAG+AGG | + | chr3.4:95369699-95369718 | None:intergenic | 45.0% |
| ! | TCACCGAGGTCTCTTTTTCT+TGG | + | chr3.4:95369704-95369723 | None:intergenic | 45.0% |
| !! | GAAGTGGGATTGGTTTCAAG+AGG | + | chr3.4:95367785-95367804 | None:intergenic | 45.0% |
| !! | AATAATTACTATATATATAA+TGG | + | chr3.4:95367888-95367907 | None:intergenic | 5.0% |
| !! | TATAAATATATGATAAAAAA+AGG | + | chr3.4:95368492-95368511 | None:intergenic | 5.0% |
| !! | TATAGTTAAAAAAAAATATA+GGG | + | chr3.4:95368827-95368846 | None:intergenic | 5.0% |
| !!! | ATAAATTTTATTATATTTGA+TGG | + | chr3.4:95368995-95369014 | None:intergenic | 5.0% |
| !!! | TAAAATGAATATTATTTTTA+AGG | - | chr3.4:95368259-95368278 | MS.gene031243:CDS | 5.0% |
| ACGCCAGAAGGAGATGATGA+GGG | - | chr3.4:95369931-95369950 | MS.gene031243:CDS | 50.0% | |
| AGAATGTTAACCAGTGCCCC+GGG | - | chr3.4:95368282-95368301 | MS.gene031243:intron | 50.0% | |
| AGAGTGAGAAGATGTGGTGG+TGG | + | chr3.4:95369651-95369670 | None:intergenic | 50.0% | |
| CACACGTGACCGTTTACTAC+GGG | + | chr3.4:95369576-95369595 | None:intergenic | 50.0% | |
| CCACTGATAAGACTCCACAG+TGG | - | chr3.4:95369756-95369775 | MS.gene031243:intron | 50.0% | |
| CGGCAAAAGCCCGTAGTAAA+CGG | - | chr3.4:95369564-95369583 | MS.gene031243:intron | 50.0% | |
| GAGAATGTTAACCAGTGCCC+CGG | - | chr3.4:95368281-95368300 | MS.gene031243:intron | 50.0% | |
| GATTCTTAACAAGTGCCCCG+GGG | - | chr3.4:95368412-95368431 | MS.gene031243:intron | 50.0% | |
| GCACACGTGACCGTTTACTA+CGG | + | chr3.4:95369577-95369596 | None:intergenic | 50.0% | |
| GCACTCCAACTCACATCGAA+AGG | - | chr3.4:95369895-95369914 | MS.gene031243:CDS | 50.0% | |
| GGATTCTTAACAAGTGCCCC+GGG | - | chr3.4:95368411-95368430 | MS.gene031243:intron | 50.0% | |
| GGTGTCAGAGTGAGAAGATG+TGG | + | chr3.4:95369657-95369676 | None:intergenic | 50.0% | |
| GTCAGAGTGAGAAGATGTGG+TGG | + | chr3.4:95369654-95369673 | None:intergenic | 50.0% | |
| TAGCTGCTTAACCAATGCCC+CGG | + | chr3.4:95368303-95368322 | None:intergenic | 50.0% | |
| TCATCATCTCCTTCTGGCGT+CGG | + | chr3.4:95369931-95369950 | None:intergenic | 50.0% | |
| TGTCTTTGGACCTAATGGCC+CGG | + | chr3.4:95369786-95369805 | None:intergenic | 50.0% | |
| ! | AAAAGAGACCTCGGTGATGG+AGG | - | chr3.4:95369707-95369726 | MS.gene031243:intron | 50.0% |
| ! | CCACTGTGGAGTCTTATCAG+TGG | + | chr3.4:95369759-95369778 | None:intergenic | 50.0% |
| ! | CGTTTACTACGGGCTTTTGC+CGG | + | chr3.4:95369566-95369585 | None:intergenic | 50.0% |
| ! | GTTTACTACGGGCTTTTGCC+GGG | + | chr3.4:95369565-95369584 | None:intergenic | 50.0% |
| !! | ACAAATGTTGGGCTTGCTGC+AGG | + | chr3.4:95369866-95369885 | None:intergenic | 50.0% |
| !! | GTCGACTCGTACCTGAGTAT+AGG | - | chr3.4:95369840-95369859 | MS.gene031243:CDS | 50.0% |
| !! | GTGGGATTGGTTTCAAGAGG+AGG | + | chr3.4:95367782-95367801 | None:intergenic | 50.0% |
| !!! | CTTGGAGAGGGCTTTTTTGG+TGG | + | chr3.4:95369686-95369705 | None:intergenic | 50.0% |
| ACACCCTCAAGTGTCTGTCC+CGG | - | chr3.4:95369544-95369563 | MS.gene031243:intron | 55.0% | |
| AGCTGCTTAACCAATGCCCC+GGG | + | chr3.4:95368302-95368321 | None:intergenic | 55.0% | |
| CTTGCTGCAGGCCTATACTC+AGG | + | chr3.4:95369854-95369873 | None:intergenic | 55.0% | |
| GAATGTTAACCAGTGCCCCG+GGG | - | chr3.4:95368283-95368302 | MS.gene031243:intron | 55.0% | |
| GACGCCAGAAGGAGATGATG+AGG | - | chr3.4:95369930-95369949 | MS.gene031243:CDS | 55.0% | |
| GTCGGATTGTGGACAGAAGC+TGG | + | chr3.4:95367618-95367637 | None:intergenic | 55.0% | |
| TCGTGCCAGAATTCTGCCGA+CGG | - | chr3.4:95367827-95367846 | MS.gene031243:CDS | 55.0% | |
| TGAAGGACCATCCAACGGTG+AGG | - | chr3.4:95370003-95370022 | MS.gene031243:CDS | 55.0% | |
| TTGCCGGGACAGACACTTGA+GGG | + | chr3.4:95369550-95369569 | None:intergenic | 55.0% | |
| TTTGCCGGGACAGACACTTG+AGG | + | chr3.4:95369551-95369570 | None:intergenic | 55.0% | |
| !! | AGATGTGGTGGTGGTGGTCA+TGG | + | chr3.4:95369642-95369661 | None:intergenic | 55.0% |
| !! | GTGAGAAGATGTGGTGGTGG+TGG | + | chr3.4:95369648-95369667 | None:intergenic | 55.0% |
| !!! | GGGCTTTTTTGGTGGAGCCA+TGG | + | chr3.4:95369678-95369697 | None:intergenic | 55.0% |
| AAGACTCCACAGTGGCGCAC+CGG | - | chr3.4:95369764-95369783 | MS.gene031243:intron | 60.0% | |
| AAGGGCCGTCGGCAGAATTC+TGG | + | chr3.4:95367835-95367854 | None:intergenic | 60.0% | |
| ACGGAGAGTTCGCCGGAGAA+AGG | + | chr3.4:95367854-95367873 | None:intergenic | 60.0% | |
| AGGCGCGAAGTCCAGTTGCA+TGG | + | chr3.4:95369602-95369621 | None:intergenic | 60.0% | |
| CACGTGTGCCTCCATGCAAC+TGG | - | chr3.4:95369588-95369607 | MS.gene031243:intron | 60.0% | |
| CGCGAAGTCCAGTTGCATGG+AGG | + | chr3.4:95369599-95369618 | None:intergenic | 60.0% | |
| CGGAGAGTTCGCCGGAGAAA+GGG | + | chr3.4:95367853-95367872 | None:intergenic | 60.0% | |
| GCTGCTTAACCAATGCCCCG+GGG | + | chr3.4:95368301-95368320 | None:intergenic | 60.0% | |
| GGGCCCTCATCATCTCCTTC+TGG | + | chr3.4:95369937-95369956 | None:intergenic | 60.0% | |
| TACCGGAACGGAGAGTTCGC+CGG | + | chr3.4:95367861-95367880 | None:intergenic | 60.0% | |
| !! | AGACCTCGGTGATGGAGGAG+AGG | - | chr3.4:95369712-95369731 | MS.gene031243:intron | 60.0% |
| !! | GACCTCGGTGATGGAGGAGA+GGG | - | chr3.4:95369713-95369732 | MS.gene031243:intron | 60.0% |
| !! | GTGGTGGTGGTGGTCATGGT+TGG | + | chr3.4:95369638-95369657 | None:intergenic | 60.0% |
| AGACTCCACAGTGGCGCACC+GGG | - | chr3.4:95369765-95369784 | MS.gene031243:intron | 65.0% | |
| CTCCGGCGAACTCTCCGTTC+CGG | - | chr3.4:95367856-95367875 | MS.gene031243:CDS | 65.0% | |
| GACCCTCTCCTCCATCACCG+AGG | + | chr3.4:95369718-95369737 | None:intergenic | 65.0% | |
| GCAAGAGCTCCGACGCCAGA+AGG | - | chr3.4:95369919-95369938 | MS.gene031243:CDS | 65.0% | |
| TAACCAATGCCCCGGGGCAC+TGG | + | chr3.4:95368295-95368314 | None:intergenic | 65.0% | |
| TAACCAGTGCCCCGGGGCAT+TGG | - | chr3.4:95368289-95368308 | MS.gene031243:intron | 65.0% | |
| TCTGCCGACGGCCCTTTCTC+CGG | - | chr3.4:95367839-95367858 | MS.gene031243:CDS | 65.0% | |
| TTCGCCGGAGAAAGGGCCGT+CGG | + | chr3.4:95367846-95367865 | None:intergenic | 65.0% | |
| AATGGCCCGGTGCGCCACTG+TGG | + | chr3.4:95369773-95369792 | None:intergenic | 70.0% | |
| CAGTGGCGCACCGGGCCATT+AGG | - | chr3.4:95369773-95369792 | MS.gene031243:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 95367590 | 95370075 | 95367590 | ID=MS.gene031243 |
| chr3.4 | mRNA | 95367590 | 95370075 | 95367590 | ID=MS.gene031243.t1;Parent=MS.gene031243 |
| chr3.4 | exon | 95369788 | 95370075 | 95369788 | ID=MS.gene031243.t1.exon1;Parent=MS.gene031243.t1 |
| chr3.4 | CDS | 95369788 | 95370075 | 95369788 | ID=cds.MS.gene031243.t1;Parent=MS.gene031243.t1 |
| chr3.4 | exon | 95367590 | 95368279 | 95367590 | ID=MS.gene031243.t1.exon2;Parent=MS.gene031243.t1 |
| chr3.4 | CDS | 95367590 | 95368279 | 95367590 | ID=cds.MS.gene031243.t1;Parent=MS.gene031243.t1 |
| Gene Sequence |
| Protein sequence |
