AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031275

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031275.t1 MTR_2g082640 98.696 230 2 1 1 229 1 230 4.39e-168 462
MS.gene031275.t1 MTR_4g081370 78.571 238 41 4 1 229 1 237 2.69e-125 354
MS.gene031275.t1 MTR_4g081370 87.634 186 22 1 45 229 8 193 3.65e-114 325
MS.gene031275.t1 MTR_2g089000 50.195 257 84 8 9 229 12 260 1.26e-72 222
MS.gene031275.t1 MTR_1g043430 52.273 176 80 1 54 229 75 246 6.18e-58 184
MS.gene031275.t1 MTR_4g075480 51.515 99 47 1 69 167 6 103 4.94e-23 94.4
MS.gene031275.t1 MTR_4g075480 51.515 99 47 1 69 167 34 131 1.28e-22 94.0
MS.gene031275.t1 MTR_1g032600 36.806 144 78 3 32 167 36 174 1.99e-19 85.9
MS.gene031275.t1 MTR_4g108360 33.898 118 74 2 51 168 35 148 4.39e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031275.t1 AT5G54680 69.787 235 64 5 1 229 1 234 2.18e-108 311
MS.gene031275.t1 AT1G51070 62.343 239 67 6 1 229 1 226 5.99e-95 277
MS.gene031275.t1 AT1G51070 65.829 199 57 4 36 229 100 292 3.08e-84 252
MS.gene031275.t1 AT4G14410 52.041 196 77 6 37 229 96 277 2.77e-55 178
MS.gene031275.t1 AT4G14410 52.041 196 77 6 37 229 96 277 2.77e-55 178
MS.gene031275.t1 AT4G14410 52.041 196 77 6 37 229 102 283 3.14e-55 178
MS.gene031275.t1 AT3G23210 52.261 199 87 5 35 229 97 291 4.98e-55 178
MS.gene031275.t1 AT3G23210 52.261 199 87 5 35 229 126 320 1.37e-54 177
MS.gene031275.t1 AT3G19860 45.299 117 59 2 66 178 2 117 1.24e-22 93.6
MS.gene031275.t1 AT3G19860 45.299 117 59 2 66 178 33 148 2.25e-22 93.6
MS.gene031275.t1 AT3G19860 45.299 117 59 2 66 178 55 170 2.39e-22 93.6
MS.gene031275.t1 AT4G36060 38.971 136 72 5 69 199 26 155 1.31e-18 82.4
MS.gene031275.t1 AT4G36060 39.706 136 71 5 69 199 26 155 2.32e-18 81.6
MS.gene031275.t1 AT4G36060 38.971 136 72 5 69 199 44 173 4.41e-18 81.3
MS.gene031275.t1 AT4G36060 39.706 136 71 5 69 199 44 173 4.76e-18 81.3
MS.gene031275.t1 AT3G47640 30.128 156 93 4 73 216 31 182 4.93e-12 63.9
MS.gene031275.t1 AT3G47640 30.128 156 93 4 73 216 31 182 4.93e-12 63.9
MS.gene031275.t1 AT3G47640 30.128 156 93 4 73 216 31 182 4.93e-12 63.9

Find 77 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAAGATTAAAGAGTTAA+AGG 0.125284 2.1:-18307641 MS.gene031275:intron
AATTTGAGTCTTTCAACTTT+TGG 0.132451 2.1:+18307674 None:intergenic
TGAAAGGCATTAACTTGTTT+GGG 0.247330 2.1:+18307295 None:intergenic
ATGAAAGGCATTAACTTGTT+TGG 0.257284 2.1:+18307294 None:intergenic
ATTGATAGGTTTGTTGAATT+AGG 0.284956 2.1:-18307790 MS.gene031275:intron
AGGAGGGTGTGTCAAGAAAC+TGG 0.351738 2.1:+18307353 None:intergenic
ATGTGCTCCTTCCAGCTCTA+AGG 0.373277 2.1:-18307947 MS.gene031275:CDS
GCATTAACTTGTTTGGGGCT+TGG 0.383016 2.1:+18307301 None:intergenic
CTCTGCTCCTAGTATTGAAA+TGG 0.383024 2.1:-18308330 MS.gene031275:intron
GCAAATGCAGCAGGGATTGC+AGG 0.388118 2.1:+18307333 None:intergenic
AAGGAGCCATCGACAGAAAC+AGG 0.397378 2.1:+18309165 None:intergenic
CGGTTGCCAATTTAGGCAAC+TGG 0.406655 2.1:+18307192 None:intergenic
CCGAATGGTGACACAGTTGC+GGG 0.410732 2.1:-18307704 MS.gene031275:CDS
AAGTTGAAAGACTCAAATTC+AGG 0.412450 2.1:-18307670 MS.gene031275:CDS
TGTTGAATTAGGCTCCATCT+TGG 0.436518 2.1:-18307779 MS.gene031275:CDS
TAAGGCTGAGAAGGAGAAGT+TGG 0.437128 2.1:-18307406 MS.gene031275:CDS
GAAGGAGAAGTTGGAGCAGC+AGG 0.442475 2.1:-18307397 MS.gene031275:CDS
ATGCCTTTCATGAGTTATCC+AGG 0.449494 2.1:-18307282 MS.gene031275:CDS
AATTGCCACATGGCAACTCC+TGG 0.456430 2.1:+18307264 None:intergenic
CCCGCAACTGTGTCACCATT+CGG 0.471915 2.1:+18307704 None:intergenic
TGATGAGAAGCAGAGGCTTA+AGG 0.477872 2.1:-18307424 MS.gene031275:CDS
TTTCCCCGGAAAACACCAAT+TGG 0.488899 2.1:-18309218 MS.gene031275:CDS
GAGAGAAGTTGCGGAGGGAT+AGG 0.490114 2.1:-18307918 MS.gene031275:CDS
CCTTGATGAGCAAATGCAGC+AGG 0.490383 2.1:+18307324 None:intergenic
AGTTACCTCTTCTTCGAACC+AGG 0.496718 2.1:+18308269 None:intergenic
TTCTTGTTGCAGAGGTAGAT+CGG 0.503971 2.1:-18307974 MS.gene031275:intron
TCCGAATGGTGACACAGTTG+CGG 0.503977 2.1:-18307705 MS.gene031275:CDS
TTAGGCTCCATCTTGGAGCC+TGG 0.505934 2.1:-18307772 MS.gene031275:CDS
TGTGAGGTATCCACGGCGGC+TGG 0.507559 2.1:+18307234 None:intergenic
GAAATTCCTGTTTCTGTCGA+TGG 0.514909 2.1:-18309171 MS.gene031275:CDS
CAGGAATTTCATCAATCAAA+GGG 0.518186 2.1:+18309184 None:intergenic
GCCATTGGAGAGTTGAGGTG+GGG 0.518653 2.1:+18309128 None:intergenic
AGGGTAATCGAAAAGCCAAT+TGG 0.523695 2.1:+18309203 None:intergenic
CGCCATTGGAGAGTTGAGGT+GGG 0.524275 2.1:+18309127 None:intergenic
ACAGGAATTTCATCAATCAA+AGG 0.524589 2.1:+18309183 None:intergenic
CTCTCGACATGCCTTAGAGC+TGG 0.527575 2.1:+18307936 None:intergenic
CAACCCAACTATGGTTTCCC+CGG 0.528497 2.1:-18309232 None:intergenic
GCAGAGGCTTAAGGCTGAGA+AGG 0.531438 2.1:-18307415 MS.gene031275:CDS
CCTGCTGCATTTGCTCATCA+AGG 0.536277 2.1:-18307324 MS.gene031275:CDS
CACCTCAACTCTCCAATGGC+GGG 0.541239 2.1:-18309125 MS.gene031275:intron
GAGGTATCCACGGCGGCTGG+TGG 0.543817 2.1:+18307237 None:intergenic
CAAAATCAGATACCCGCCAT+TGG 0.547933 2.1:+18309113 None:intergenic
GTGTGTCAAGAAACTGGGTT+GGG 0.557971 2.1:+18307359 None:intergenic
GCTCCATCTTGGAGCCTGGA+AGG 0.560039 2.1:-18307768 MS.gene031275:CDS
AAGAACCTGGTTCGAAGAAG+AGG 0.561194 2.1:-18308274 MS.gene031275:intron
CCGCCATTGGAGAGTTGAGG+TGG 0.568621 2.1:+18309126 None:intergenic
GAAAGGCATTAACTTGTTTG+GGG 0.569345 2.1:+18307296 None:intergenic
CCATTGGAGAGTTGAGGTGG+GGG 0.574009 2.1:+18309129 None:intergenic
TGGCCTTCCAGGCTCCAAGA+TGG 0.580720 2.1:+18307765 None:intergenic
AATGGATGATAGCTCTCTAG+TGG 0.589069 2.1:-18308312 MS.gene031275:CDS
CGACATGCCTTAGAGCTGGA+AGG 0.592843 2.1:+18307940 None:intergenic
CAATTTAGGCAACTGGTGGA+CGG 0.594311 2.1:+18307199 None:intergenic
CCACCTCAACTCTCCAATGG+CGG 0.595417 2.1:-18309126 MS.gene031275:CDS
ATTCATGCCACCAGCCGCCG+TGG 0.596384 2.1:-18307244 MS.gene031275:CDS
AGGCATGTCGAGAGAAGTTG+CGG 0.604709 2.1:-18307927 MS.gene031275:CDS
ATGATCTTGTGAGGTATCCA+CGG 0.609314 2.1:+18307227 None:intergenic
ACTCCTGGATAACTCATGAA+AGG 0.613176 2.1:+18307279 None:intergenic
TCTGATGGTATCAAAGAACC+TGG 0.613566 2.1:-18308287 MS.gene031275:CDS
TTGCCAATTTAGGCAACTGG+TGG 0.613733 2.1:+18307195 None:intergenic
TACCCGCCATTGGAGAGTTG+AGG 0.621755 2.1:+18309123 None:intergenic
AACTTCGTGATGAGAAGCAG+AGG 0.627738 2.1:-18307431 MS.gene031275:CDS
GGTGTGTCAAGAAACTGGGT+TGG 0.631646 2.1:+18307358 None:intergenic
AGCTCTCTAGTGGATTCTGA+TGG 0.634077 2.1:-18308302 MS.gene031275:CDS
ATGGCTCCTTCGCCTTCACG+TGG 0.638692 2.1:-18309152 MS.gene031275:CDS
CTTGATGAGCAAATGCAGCA+GGG 0.642514 2.1:+18307325 None:intergenic
AATGCAGCAGGGATTGCAGG+AGG 0.644570 2.1:+18307336 None:intergenic
ATGCAGCAGGGATTGCAGGA+GGG 0.653807 2.1:+18307337 None:intergenic
CATGTCGAGAGAAGTTGCGG+AGG 0.656044 2.1:-18307924 MS.gene031275:CDS
ATGTCGAGAGAAGTTGCGGA+GGG 0.659997 2.1:-18307923 MS.gene031275:CDS
TCTGATTGATGCTGTCCGAA+TGG 0.662212 2.1:-18307719 MS.gene031275:CDS
TGGTGGCATGAATTGCCACA+TGG 0.684045 2.1:+18307254 None:intergenic
GGAGGGTGTGTCAAGAAACT+GGG 0.689856 2.1:+18307354 None:intergenic
ACGGAGTACATGATCTTGTG+AGG 0.697745 2.1:+18307218 None:intergenic
AAGGCCACCTAAAACAGACA+AGG 0.714338 2.1:-18307749 MS.gene031275:CDS
CGAATGGTGACACAGTTGCG+GGG 0.732614 2.1:-18307703 MS.gene031275:CDS
GTTATCCAGGAGTTGCCATG+TGG 0.743485 2.1:-18307269 MS.gene031275:CDS
ATCTTGTGAGGTATCCACGG+CGG 0.745646 2.1:+18307230 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAAATACAAAAATAT+GGG + chr2.1:18308436-18308455 None:intergenic 10.0%
!! AACTTAGTAAATTAATACTA+TGG + chr2.1:18308058-18308077 None:intergenic 15.0%
!! ACTTAGTAAATTAATACTAT+GGG + chr2.1:18308057-18308076 None:intergenic 15.0%
!! AGTTAAAGTATAAAAATGAA+GGG + chr2.1:18308880-18308899 None:intergenic 15.0%
!! CAAGAAAAAATACAAAAATA+TGG + chr2.1:18308437-18308456 None:intergenic 15.0%
!!! AAAGTTTGAATTTTTAAACT+TGG - chr2.1:18307409-18307428 MS.gene031275:CDS 15.0%
!!! AAATGAAATGATTTAGAATA+TGG + chr2.1:18308857-18308876 None:intergenic 15.0%
!!! AAGTTTGAATTTTTAAACTT+GGG - chr2.1:18307410-18307429 MS.gene031275:CDS 15.0%
!!! GTATTTTTTATAAATTGTTG+TGG - chr2.1:18307457-18307476 MS.gene031275:intron 15.0%
!! CAGTTAAAGTATAAAAATGA+AGG + chr2.1:18308881-18308900 None:intergenic 20.0%
!! GTAATATAATTGAGTCAAAT+TGG - chr2.1:18308293-18308312 MS.gene031275:CDS 20.0%
!! TATCCACAAATTTGAAAAAA+GGG + chr2.1:18307372-18307391 None:intergenic 20.0%
!! TCAATATTCAGTGTTATATA+AGG + chr2.1:18308943-18308962 None:intergenic 20.0%
!! TTATCCACAAATTTGAAAAA+AGG + chr2.1:18307373-18307392 None:intergenic 20.0%
! AAACCCTAAATTAAGAAAAG+GGG + chr2.1:18307338-18307357 None:intergenic 25.0%
! AATAATAAAAGGCAAGATAG+TGG + chr2.1:18308551-18308570 None:intergenic 25.0%
! AGAGAAGATTAAAGAGTTAA+AGG - chr2.1:18308784-18308803 MS.gene031275:intron 25.0%
! AGATTAAAGAGTTAAAGGTA+AGG - chr2.1:18308789-18308808 MS.gene031275:intron 25.0%
! AGTAAATTAATACTATGGGA+TGG + chr2.1:18308053-18308072 None:intergenic 25.0%
! ATAATAAAAGGCAAGATAGT+GGG + chr2.1:18308550-18308569 None:intergenic 25.0%
! ATCCACAAATTTGAAAAAAG+GGG + chr2.1:18307371-18307390 None:intergenic 25.0%
! CTAATATGATTGACATTGAT+AGG - chr2.1:18308621-18308640 MS.gene031275:intron 25.0%
! CTTGTTTAATGAGAAATGAA+AGG + chr2.1:18308193-18308212 None:intergenic 25.0%
! GAAACCCTAAATTAAGAAAA+GGG + chr2.1:18307339-18307358 None:intergenic 25.0%
! GTAAATTAATACTATGGGAT+GGG + chr2.1:18308052-18308071 None:intergenic 25.0%
! TCTTATAGTATACAAGCAAT+AGG + chr2.1:18308404-18308423 None:intergenic 25.0%
! TGAAACCCTAAATTAAGAAA+AGG + chr2.1:18307340-18307359 None:intergenic 25.0%
!! AAATTGCTCTAAATCAATTG+AGG + chr2.1:18308815-18308834 None:intergenic 25.0%
!! AAATTGTTGTGGTTTTCATT+TGG - chr2.1:18307468-18307487 MS.gene031275:intron 25.0%
!! AATTTGAGTCTTTCAACTTT+TGG + chr2.1:18308754-18308773 None:intergenic 25.0%
!! ATTTGAGTCTTTCAACTTTT+GGG + chr2.1:18308753-18308772 None:intergenic 25.0%
!! GACAAGTGTAATTTTTGAAT+TGG - chr2.1:18307575-18307594 MS.gene031275:intron 25.0%
!! TGTTATGTTTTGTGTACTTA+TGG - chr2.1:18307503-18307522 MS.gene031275:intron 25.0%
!!! AATTTTCTTTGAGAGATAGA+AGG - chr2.1:18308830-18308849 MS.gene031275:intron 25.0%
!!! ATTGATAGGTTTGTTGAATT+AGG - chr2.1:18308635-18308654 MS.gene031275:intron 25.0%
AAACCAAAACCTAAAATCCA+AGG + chr2.1:18307992-18308011 None:intergenic 30.0%
AAACCTAAAATCCAAGGTAA+AGG + chr2.1:18307986-18308005 None:intergenic 30.0%
AAAGGAATTGCAACAGTAAT+TGG + chr2.1:18307968-18307987 None:intergenic 30.0%
AAGAGGAGAGGAATAATAAA+AGG + chr2.1:18308562-18308581 None:intergenic 30.0%
AAGGAATTGCAACAGTAATT+GGG + chr2.1:18307967-18307986 None:intergenic 30.0%
AAGTTGAAAGACTCAAATTC+AGG - chr2.1:18308755-18308774 MS.gene031275:intron 30.0%
AATTGATATGTGTTAAACGC+TGG - chr2.1:18307784-18307803 MS.gene031275:CDS 30.0%
ACAGGAATTTCATCAATCAA+AGG + chr2.1:18307245-18307264 None:intergenic 30.0%
CAGGAATTTCATCAATCAAA+GGG + chr2.1:18307244-18307263 None:intergenic 30.0%
CTATCATCCATTTCAATACT+AGG + chr2.1:18308105-18308124 None:intergenic 30.0%
GTCAAATTGGCAATTTAACA+TGG - chr2.1:18308306-18308325 MS.gene031275:CDS 30.0%
TAATAAAAGGCAAGATAGTG+GGG + chr2.1:18308549-18308568 None:intergenic 30.0%
TTGAATTCTATCTACTATGC+AGG - chr2.1:18308959-18308978 MS.gene031275:intron 30.0%
! ATTCCTTTACCTTGGATTTT+AGG - chr2.1:18307980-18307999 MS.gene031275:intron 30.0%
! GTTTTGTGTACTTATGGTTT+TGG - chr2.1:18307509-18307528 MS.gene031275:intron 30.0%
! TTGCCCCTTTTCTTAATTTA+GGG - chr2.1:18307332-18307351 MS.gene031275:CDS 30.0%
! TTTGCCCCTTTTCTTAATTT+AGG - chr2.1:18307331-18307350 MS.gene031275:CDS 30.0%
! TTTTTATTGATGCCACTGAA+CGG + chr2.1:18308366-18308385 None:intergenic 30.0%
!! ATGAAAGGCATTAACTTGTT+TGG + chr2.1:18309134-18309153 None:intergenic 30.0%
!! CCTAGTTTTCCATAATACAA+GGG + chr2.1:18307882-18307901 None:intergenic 30.0%
!! TCCTAGTTTTCCATAATACA+AGG + chr2.1:18307883-18307902 None:intergenic 30.0%
!! TGAAAGGCATTAACTTGTTT+GGG + chr2.1:18309133-18309152 None:intergenic 30.0%
!!! TGTATTTTTTCTTGTTGCAG+AGG - chr2.1:18308443-18308462 MS.gene031275:intron 30.0%
!!! TTACCTTGGATTTTAGGTTT+TGG - chr2.1:18307986-18308005 MS.gene031275:intron 30.0%
ACAAGCAATAGGATTTGACA+GGG + chr2.1:18308393-18308412 None:intergenic 35.0%
AGGAATTGCAACAGTAATTG+GGG + chr2.1:18307966-18307985 None:intergenic 35.0%
CCCTTGTATTATGGAAAACT+AGG - chr2.1:18307879-18307898 MS.gene031275:intron 35.0%
TACAAGCAATAGGATTTGAC+AGG + chr2.1:18308394-18308413 None:intergenic 35.0%
TAGTAGAACTTGAACTACGA+TGG - chr2.1:18307540-18307559 MS.gene031275:intron 35.0%
TCAACTAACTTACAGCTTTG+AGG - chr2.1:18308271-18308290 MS.gene031275:intron 35.0%
TGAAGATAATTAGCGATAGC+AGG - chr2.1:18308338-18308357 MS.gene031275:intron 35.0%
TGTTCTTGAATCTTCTGTTC+TGG - chr2.1:18307608-18307627 MS.gene031275:intron 35.0%
! ATCTTCTGTTCTGGATATGT+TGG - chr2.1:18307617-18307636 MS.gene031275:intron 35.0%
! TATTCCTCTCCTCTTTTACT+CGG - chr2.1:18308567-18308586 MS.gene031275:intron 35.0%
!! AAAAGCCAATTGGTGTTTTC+CGG + chr2.1:18307215-18307234 None:intergenic 35.0%
!! GAAAGGCATTAACTTGTTTG+GGG + chr2.1:18309132-18309151 None:intergenic 35.0%
!!! TGCCCCTTTTTTCAAATTTG+TGG - chr2.1:18307366-18307385 MS.gene031275:CDS 35.0%
!!! TTGTGTACTTATGGTTTTGG+TGG - chr2.1:18307512-18307531 MS.gene031275:intron 35.0%
AACCTGCATCCCTTGTATTA+TGG - chr2.1:18307870-18307889 MS.gene031275:intron 40.0%
AATGGATGATAGCTCTCTAG+TGG - chr2.1:18308113-18308132 MS.gene031275:intron 40.0%
ACATACACGAACACAAGACA+CGG - chr2.1:18307694-18307713 MS.gene031275:CDS 40.0%
ACTCCTGGATAACTCATGAA+AGG + chr2.1:18309149-18309168 None:intergenic 40.0%
AGGGTAATCGAAAAGCCAAT+TGG + chr2.1:18307225-18307244 None:intergenic 40.0%
ATGCCTTTCATGAGTTATCC+AGG - chr2.1:18309143-18309162 MS.gene031275:CDS 40.0%
CTGTTGCAATTCCTTTACCT+TGG - chr2.1:18307972-18307991 MS.gene031275:intron 40.0%
TCTGATGGTATCAAAGAACC+TGG - chr2.1:18308138-18308157 MS.gene031275:intron 40.0%
TGGGTGTAGACTGTGTATTT+GGG - chr2.1:18308590-18308609 MS.gene031275:intron 40.0%
TGTTGAATTAGGCTCCATCT+TGG - chr2.1:18308646-18308665 MS.gene031275:intron 40.0%
TTCCATAATACAAGGGATGC+AGG + chr2.1:18307875-18307894 None:intergenic 40.0%
TTCTTGTTGCAGAGGTAGAT+CGG - chr2.1:18308451-18308470 MS.gene031275:intron 40.0%
! ATGATCTTGTGAGGTATCCA+CGG + chr2.1:18309201-18309220 None:intergenic 40.0%
! ATTGCTGCCTTGTCTGTTTT+AGG + chr2.1:18308686-18308705 None:intergenic 40.0%
! CTCTGCTCCTAGTATTGAAA+TGG - chr2.1:18308095-18308114 MS.gene031275:intron 40.0%
! TCTGTTCTGGATATGTTGGT+GGG - chr2.1:18307621-18307640 MS.gene031275:intron 40.0%
! TTCTGTTCTGGATATGTTGG+TGG - chr2.1:18307620-18307639 MS.gene031275:intron 40.0%
!! AAAGCCAATTGGTGTTTTCC+GGG + chr2.1:18307214-18307233 None:intergenic 40.0%
!! GAAATTCCTGTTTCTGTCGA+TGG - chr2.1:18307254-18307273 MS.gene031275:CDS 40.0%
AACTTCGTGATGAGAAGCAG+AGG - chr2.1:18308994-18309013 MS.gene031275:intron 45.0%
AAGGCCACCTAAAACAGACA+AGG - chr2.1:18308676-18308695 MS.gene031275:intron 45.0%
ACACAGCATGTGTCAGTGTT+GGG - chr2.1:18307761-18307780 MS.gene031275:CDS 45.0%
ACGGAGTACATGATCTTGTG+AGG + chr2.1:18309210-18309229 None:intergenic 45.0%
AGTTACCTCTTCTTCGAACC+AGG + chr2.1:18308159-18308178 None:intergenic 45.0%
CAAAATCAGATACCCGCCAT+TGG + chr2.1:18307315-18307334 None:intergenic 45.0%
CAATTTGCACGAGCAGCTTA+AGG + chr2.1:18307848-18307867 None:intergenic 45.0%
CTTGATGAGCAAATGCAGCA+GGG + chr2.1:18309103-18309122 None:intergenic 45.0%
GGGTGTAGACTGTGTATTTG+GGG - chr2.1:18308591-18308610 MS.gene031275:intron 45.0%
GTGGGTGTAGACTGTGTATT+TGG - chr2.1:18308589-18308608 MS.gene031275:intron 45.0%
GTGTGTCAAGAAACTGGGTT+GGG + chr2.1:18309069-18309088 None:intergenic 45.0%
TAAGGCTGAGAAGGAGAAGT+TGG - chr2.1:18309019-18309038 MS.gene031275:intron 45.0%
TCTGATTGATGCTGTCCGAA+TGG - chr2.1:18308706-18308725 MS.gene031275:intron 45.0%
TGATGAGAAGCAGAGGCTTA+AGG - chr2.1:18309001-18309020 MS.gene031275:intron 45.0%
TTTCCCCGGAAAACACCAAT+TGG - chr2.1:18307207-18307226 MS.gene031275:CDS 45.0%
! AAGAACCTGGTTCGAAGAAG+AGG - chr2.1:18308151-18308170 MS.gene031275:intron 45.0%
! CTGAAGTGTCAGTGCTACAT+AGG - chr2.1:18307820-18307839 MS.gene031275:intron 45.0%
!! AAGCCAATTGGTGTTTTCCG+GGG + chr2.1:18307213-18307232 None:intergenic 45.0%
!! AGCTCTCTAGTGGATTCTGA+TGG - chr2.1:18308123-18308142 MS.gene031275:intron 45.0%
!! GCATTAACTTGTTTGGGGCT+TGG + chr2.1:18309127-18309146 None:intergenic 45.0%
AAGGAGCCATCGACAGAAAC+AGG + chr2.1:18307263-18307282 None:intergenic 50.0%
AATTGCCACATGGCAACTCC+TGG + chr2.1:18309164-18309183 None:intergenic 50.0%
AGGCATGTCGAGAGAAGTTG+CGG - chr2.1:18308498-18308517 MS.gene031275:intron 50.0%
ATGTCGAGAGAAGTTGCGGA+GGG - chr2.1:18308502-18308521 MS.gene031275:intron 50.0%
ATGTGCTCCTTCCAGCTCTA+AGG - chr2.1:18308478-18308497 MS.gene031275:intron 50.0%
CCTGCTGCATTTGCTCATCA+AGG - chr2.1:18309101-18309120 MS.gene031275:intron 50.0%
CCTTGATGAGCAAATGCAGC+AGG + chr2.1:18309104-18309123 None:intergenic 50.0%
CTACACCCACCGAGTAAAAG+AGG + chr2.1:18308579-18308598 None:intergenic 50.0%
GACACAGCATGTGTCAGTGT+TGG - chr2.1:18307760-18307779 MS.gene031275:CDS 50.0%
GGTGTGTCAAGAAACTGGGT+TGG + chr2.1:18309070-18309089 None:intergenic 50.0%
GTTATCCAGGAGTTGCCATG+TGG - chr2.1:18309156-18309175 MS.gene031275:CDS 50.0%
TCCGAATGGTGACACAGTTG+CGG - chr2.1:18308720-18308739 MS.gene031275:intron 50.0%
TGGTGGCATGAATTGCCACA+TGG + chr2.1:18309174-18309193 None:intergenic 50.0%
! AGGAGGGTGTGTCAAGAAAC+TGG + chr2.1:18309075-18309094 None:intergenic 50.0%
! ATCTTGTGAGGTATCCACGG+CGG + chr2.1:18309198-18309217 None:intergenic 50.0%
! CCTCTCCTCTTTTACTCGGT+GGG - chr2.1:18308571-18308590 MS.gene031275:intron 50.0%
! GGAGGGTGTGTCAAGAAACT+GGG + chr2.1:18309074-18309093 None:intergenic 50.0%
! TCCTCTCCTCTTTTACTCGG+TGG - chr2.1:18308570-18308589 MS.gene031275:intron 50.0%
!! GCTGCCTTGTCTGTTTTAGG+TGG + chr2.1:18308683-18308702 None:intergenic 50.0%
!! TCTGTTTTAGGTGGCCTTCC+AGG + chr2.1:18308674-18308693 None:intergenic 50.0%
AATGCAGCAGGGATTGCAGG+AGG + chr2.1:18309092-18309111 None:intergenic 55.0%
ATGCAGCAGGGATTGCAGGA+GGG + chr2.1:18309091-18309110 None:intergenic 55.0%
CACCTCAACTCTCCAATGGC+GGG - chr2.1:18307300-18307319 MS.gene031275:CDS 55.0%
CATGTCGAGAGAAGTTGCGG+AGG - chr2.1:18308501-18308520 MS.gene031275:intron 55.0%
CCACCTCAACTCTCCAATGG+CGG - chr2.1:18307299-18307318 MS.gene031275:CDS 55.0%
CCATTGGAGAGTTGAGGTGG+GGG + chr2.1:18307299-18307318 None:intergenic 55.0%
CCCACCGAGTAAAAGAGGAG+AGG + chr2.1:18308574-18308593 None:intergenic 55.0%
CCCGCAACTGTGTCACCATT+CGG + chr2.1:18308724-18308743 None:intergenic 55.0%
CCGAATGGTGACACAGTTGC+GGG - chr2.1:18308721-18308740 MS.gene031275:intron 55.0%
CGAATGGTGACACAGTTGCG+GGG - chr2.1:18308722-18308741 MS.gene031275:intron 55.0%
CGACATGCCTTAGAGCTGGA+AGG + chr2.1:18308488-18308507 None:intergenic 55.0%
CGCCATTGGAGAGTTGAGGT+GGG + chr2.1:18307301-18307320 None:intergenic 55.0%
CTCTCGACATGCCTTAGAGC+TGG + chr2.1:18308492-18308511 None:intergenic 55.0%
GAAGGAGAAGTTGGAGCAGC+AGG - chr2.1:18309028-18309047 MS.gene031275:intron 55.0%
GAGAGAAGTTGCGGAGGGAT+AGG - chr2.1:18308507-18308526 MS.gene031275:intron 55.0%
GCAAATGCAGCAGGGATTGC+AGG + chr2.1:18309095-18309114 None:intergenic 55.0%
GCAGAGGCTTAAGGCTGAGA+AGG - chr2.1:18309010-18309029 MS.gene031275:intron 55.0%
GCCATTGGAGAGTTGAGGTG+GGG + chr2.1:18307300-18307319 None:intergenic 55.0%
TACCCGCCATTGGAGAGTTG+AGG + chr2.1:18307305-18307324 None:intergenic 55.0%
TTAGGCTCCATCTTGGAGCC+TGG - chr2.1:18308653-18308672 MS.gene031275:intron 55.0%
ATGGCTCCTTCGCCTTCACG+TGG - chr2.1:18307273-18307292 MS.gene031275:CDS 60.0%
CCCCCACCTCAACTCTCCAA+TGG - chr2.1:18307296-18307315 MS.gene031275:CDS 60.0%
CCGCCATTGGAGAGTTGAGG+TGG + chr2.1:18307302-18307321 None:intergenic 60.0%
CGATAGCAGGCTCCGTTCAG+TGG - chr2.1:18308351-18308370 MS.gene031275:intron 60.0%
GCTCCATCTTGGAGCCTGGA+AGG - chr2.1:18308657-18308676 MS.gene031275:intron 60.0%
TGGCCTTCCAGGCTCCAAGA+TGG + chr2.1:18308663-18308682 None:intergenic 60.0%
ATTCATGCCACCAGCCGCCG+TGG - chr2.1:18309181-18309200 MS.gene031275:CDS 65.0%
TTGAGGTGGGGGCCACGTGA+AGG + chr2.1:18307288-18307307 None:intergenic 65.0%
! TGTGAGGTATCCACGGCGGC+TGG + chr2.1:18309194-18309213 None:intergenic 65.0%
TGGGGGCCACGTGAAGGCGA+AGG + chr2.1:18307282-18307301 None:intergenic 70.0%
! GAGGTATCCACGGCGGCTGG+TGG + chr2.1:18309191-18309210 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 18307203 18309244 18307203 ID=MS.gene031275
chr2.1 mRNA 18307203 18309244 18307203 ID=MS.gene031275.t1;Parent=MS.gene031275
chr2.1 exon 18309126 18309244 18309126 ID=MS.gene031275.t1.exon1;Parent=MS.gene031275.t1
chr2.1 CDS 18309126 18309244 18309126 ID=cds.MS.gene031275.t1;Parent=MS.gene031275.t1
chr2.1 exon 18308275 18308340 18308275 ID=MS.gene031275.t1.exon2;Parent=MS.gene031275.t1
chr2.1 CDS 18308275 18308340 18308275 ID=cds.MS.gene031275.t1;Parent=MS.gene031275.t1
chr2.1 exon 18307907 18307984 18307907 ID=MS.gene031275.t1.exon3;Parent=MS.gene031275.t1
chr2.1 CDS 18307907 18307984 18307907 ID=cds.MS.gene031275.t1;Parent=MS.gene031275.t1
chr2.1 exon 18307642 18307804 18307642 ID=MS.gene031275.t1.exon4;Parent=MS.gene031275.t1
chr2.1 CDS 18307642 18307804 18307642 ID=cds.MS.gene031275.t1;Parent=MS.gene031275.t1
chr2.1 exon 18307203 18307466 18307203 ID=MS.gene031275.t1.exon5;Parent=MS.gene031275.t1
chr2.1 CDS 18307203 18307466 18307203 ID=cds.MS.gene031275.t1;Parent=MS.gene031275.t1
Gene Sequence

>MS.gene031275

ATGGTTTCCCCGGAAAACACCAATTGGCTTTTCGATTACCCTTTGATTGATGAAATTCCTGTTTCTGTCGATGGCTCCTTCGCCTTCACGTGGCCCCCACCTCAACTCTCCAATGGCGGGTATCTGATTTTGCCCCTTTTCTTAATTTAGGGTTTCAAGTTTTTGCCCCTTTTTTCAAATTTGTGGATAATTGTTGTGCTTTTTGTAAAGTTTGAATTTTTAAACTTGGGTTTGTAAAATTTTGTTGTAAAATTGTATTTTTTATAAATTGTTGTGGTTTTCATTTGGTCTTCAGTTATTTGTTATGTTTTGTGTACTTATGGTTTTGGTGGATTTGTAGTAGAACTTGAACTACGATGGAAGTACAAGTGTGACAAGTGTAATTTTTGAATTGGTTAATGATGATGTTCTTGAATCTTCTGTTCTGGATATGTTGGTGGGTTTAATTGTCTGTGCTGTCTTGTTTCAATAGCTGTTGATGAAGCATCGACACATACACGAACACAAGACACGGCACTGACACTAGTAAACAATTTGAGAAAAATGAATAATTAAATGACACAGCATGTGTCAGTGTTGGGAATTGATATGTGTTAAACGCTGGAAACACTTTCAATCTGAAGTGTCAGTGCTACATAGGTGCCTTAAGCTGCTCGTGCAAATTGACAACCTGCATCCCTTGTATTATGGAAAACTAGGAACTAATTGTGACTGATGCAATCGTAGTTTAATTACAACAGCGATGATGTAGTTGTAGAGACCCCAATTACTGTTGCAATTCCTTTACCTTGGATTTTAGGTTTTGGTTTGAGAATTAGAATTTTTTTCTTCTATAAATACATATCTCCCATCCCATAGTATTAATTTACTAAGTTATGCTTCTGTGTTATCTCTCTGCTCCTAGTATTGAAATGGATGATAGCTCTCTAGTGGATTCTGATGGTATCAAAGAACCTGGTTCGAAGAAGAGGTAACTATTTTGTTTTACCTTTCATTTCTCATTAAACAAGTTAGTCAATGTTAATAAAATCAACACATGATCGACATGAGTAGTGTAGCGACTTAGCGTCAACTAACTTACAGCTTTGAGGTAATATAATTGAGTCAAATTGGCAATTTAACATGGTTTCTAAAGTGAAGATAATTAGCGATAGCAGGCTCCGTTCAGTGGCATCAATAAAAAAATTCCCTGTCAAATCCTATTGCTTGTATACTATAAGAAAAAGTTATCCCATATTTTTGTATTTTTTCTTGTTGCAGAGGTAGATCGGATTCATGTGCTCCTTCCAGCTCTAAGGCATGTCGAGAGAAGTTGCGGAGGGATAGGCTGAACGACAAGTAATCCCCACTATCTTGCCTTTTATTATTCCTCTCCTCTTTTACTCGGTGGGTGTAGACTGTGTATTTGGGGTATGCAACTAATATGATTGACATTGATAGGTTTGTTGAATTAGGCTCCATCTTGGAGCCTGGAAGGCCACCTAAAACAGACAAGGCAGCAATTCTGATTGATGCTGTCCGAATGGTGACACAGTTGCGGGGTGAAGCCCAAAAGTTGAAAGACTCAAATTCAGGTCTTCAAGAGAAGATTAAAGAGTTAAAGGTAAGGCCTCAATTGATTTAGAGCAATTTTCTTTGAGAGATAGAAGGTCCATATTCTAAATCATTTCATTTCCCTTCATTTTTATACTTTAACTGTAGTACTTTGTCATATCAGTGACTTCAATATCTGATTGACCTTATATAACACTGAATATTGAATTCTATCTACTATGCAGGTTGAGAAGAATGAACTTCGTGATGAGAAGCAGAGGCTTAAGGCTGAGAAGGAGAAGTTGGAGCAGCAGGTGAAATCAATGAACACCCAACCCAGTTTCTTGACACACCCTCCTGCAATCCCTGCTGCATTTGCTCATCAAGGCCAAGCCCCAAACAAGTTAATGCCTTTCATGAGTTATCCAGGAGTTGCCATGTGGCAATTCATGCCACCAGCCGCCGTGGATACCTCACAAGATCATGTACTCCGTCCACCAGTTGCCTAA
Protein sequence

>MS.gene031275.t1

MVSPENTNWLFDYPLIDEIPVSVDGSFAFTWPPPQLSNGGIEMDDSSLVDSDGIKEPGSKKRGRSDSCAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQVKSMNTQPSFLTHPPAIPAAFAHQGQAPNKLMPFMSYPGVAMWQFMPPAAVDTSQDHVLRPPVA