Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03141.t1 | XP_013463003.1 | 93.6 | 683 | 44 | 0 | 1 | 683 | 1 | 683 | 0.00E+00 | 1159.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03141.t1 | A9LNK9 | 64.6 | 689 | 177 | 17 | 1 | 680 | 1 | 631 | 1.8e-191 | 670.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03141.t1 | A0A072V6R5 | 93.6 | 683 | 44 | 0 | 1 | 683 | 1 | 683 | 0.0e+00 | 1159.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene03141.t1 | TF | C3H |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03141.t1 | MTR_2g029540 | 97.218 | 683 | 19 | 0 | 1 | 683 | 1 | 683 | 0.0 | 1375 |
MS.gene03141.t1 | MTR_8g088390 | 26.452 | 155 | 104 | 2 | 246 | 394 | 343 | 493 | 1.92e-12 | 70.9 |
MS.gene03141.t1 | MTR_7g085500 | 29.710 | 138 | 91 | 2 | 259 | 394 | 432 | 565 | 2.69e-12 | 70.5 |
MS.gene03141.t1 | MTR_4g005110 | 26.316 | 152 | 101 | 3 | 259 | 403 | 395 | 542 | 3.60e-12 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03141.t1 | AT1G30460 | 61.718 | 687 | 200 | 16 | 1 | 680 | 1 | 631 | 0.0 | 669 |
MS.gene03141.t1 | AT1G30460 | 67.464 | 418 | 104 | 8 | 1 | 413 | 1 | 391 | 1.14e-179 | 517 |
MS.gene03141.t1 | AT1G30460 | 57.143 | 266 | 82 | 8 | 1 | 261 | 1 | 239 | 2.65e-75 | 242 |
MS.gene03141.t1 | AT4G11970 | 50.667 | 150 | 70 | 3 | 246 | 394 | 61 | 207 | 5.37e-35 | 137 |
MS.gene03141.t1 | AT4G11970 | 50.667 | 150 | 70 | 3 | 246 | 394 | 61 | 207 | 5.49e-35 | 136 |
MS.gene03141.t1 | AT4G11970 | 50.667 | 150 | 70 | 3 | 246 | 394 | 61 | 207 | 1.65e-34 | 135 |
MS.gene03141.t1 | AT4G11970 | 50.667 | 150 | 70 | 3 | 246 | 394 | 61 | 207 | 3.51e-33 | 133 |
MS.gene03141.t1 | AT4G11970 | 50.667 | 150 | 70 | 3 | 246 | 394 | 61 | 207 | 3.51e-33 | 133 |
MS.gene03141.t1 | AT4G11970 | 52.294 | 109 | 50 | 2 | 287 | 394 | 2 | 109 | 9.87e-23 | 99.4 |
MS.gene03141.t1 | AT4G11970 | 52.294 | 109 | 50 | 2 | 287 | 394 | 2 | 109 | 1.16e-22 | 98.6 |
MS.gene03141.t1 | AT1G27960 | 25.871 | 201 | 128 | 5 | 211 | 403 | 290 | 477 | 2.27e-13 | 73.6 |
MS.gene03141.t1 | AT1G27960 | 25.871 | 201 | 128 | 5 | 211 | 403 | 216 | 403 | 4.03e-13 | 72.8 |
MS.gene03141.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 401 | 551 | 9.45e-13 | 72.0 |
MS.gene03141.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 345 | 495 | 9.61e-13 | 71.6 |
MS.gene03141.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 388 | 538 | 1.01e-12 | 71.6 |
MS.gene03141.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 401 | 551 | 1.01e-12 | 71.6 |
MS.gene03141.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 401 | 551 | 1.04e-12 | 71.6 |
MS.gene03141.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 358 | 508 | 1.05e-12 | 71.6 |
MS.gene03141.t1 | AT3G13460 | 24.638 | 207 | 142 | 3 | 198 | 394 | 376 | 578 | 3.07e-12 | 70.5 |
MS.gene03141.t1 | AT3G13460 | 24.638 | 207 | 142 | 3 | 198 | 394 | 374 | 576 | 3.25e-12 | 70.1 |
MS.gene03141.t1 | AT3G13460 | 24.638 | 207 | 142 | 3 | 198 | 394 | 377 | 579 | 3.26e-12 | 70.1 |
MS.gene03141.t1 | AT5G61020 | 23.301 | 206 | 144 | 4 | 197 | 394 | 197 | 396 | 3.74e-11 | 66.6 |
MS.gene03141.t1 | AT5G61020 | 23.301 | 206 | 144 | 4 | 197 | 394 | 199 | 398 | 4.36e-11 | 66.2 |
Find 220 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTAGGTTCGGTGGTGATTT+TGG | 0.093023 | 2.1:-61439570 | MS.gene03141:CDS |
TCTTCAAATGGGACAATATC+TGG | 0.215787 | 2.1:+61439864 | None:intergenic |
AGAATTGGTGGTTCTGTTGC+TGG | 0.242654 | 2.1:-61443246 | MS.gene03141:CDS |
ATGTTTCCCGGTGGTGGATT+TGG | 0.262536 | 2.1:-61439498 | MS.gene03141:CDS |
TGTTTCCCGGTGGTGGATTT+GGG | 0.276865 | 2.1:-61439497 | MS.gene03141:CDS |
GGCATGGGTCCCCGAGGTTT+TGG | 0.279783 | 2.1:-61439603 | MS.gene03141:CDS |
TGATGTTCGATTGGCTTGAT+TGG | 0.286468 | 2.1:+61445779 | None:intergenic |
TCTTCTTCATTGTCTTCAAA+TGG | 0.286902 | 2.1:+61439852 | None:intergenic |
CGGGGTGGAGACGGCGGCGG+TGG | 0.296415 | 2.1:+61449426 | None:intergenic |
CCTGGTGGACCCGATGGTTT+TGG | 0.305420 | 2.1:-61439642 | MS.gene03141:CDS |
TGTCTGTACAACAAGGAGTA+TGG | 0.310359 | 2.1:-61444707 | MS.gene03141:CDS |
ACCGGTAAGTTCTCATTGTA+TGG | 0.319343 | 2.1:+61441827 | None:intergenic |
TGCTTCTGCAGGTACAAGTT+AGG | 0.323400 | 2.1:-61446128 | MS.gene03141:intron |
GCTCATGGAACGGCACATTA+TGG | 0.324684 | 2.1:-61443207 | MS.gene03141:CDS |
TCGTCGACCGGGAGCATTAC+CGG | 0.337873 | 2.1:+61449327 | None:intergenic |
GGTGGAGACGGCGGCGGTGG+AGG | 0.346062 | 2.1:+61449429 | None:intergenic |
AGCAACAGAACCACCAATTC+TGG | 0.361324 | 2.1:+61443248 | None:intergenic |
TTTCCTGACTCTGTAACTAA+TGG | 0.362682 | 2.1:+61445882 | None:intergenic |
CATTGTATGGATTTCTCAAA+TGG | 0.375064 | 2.1:+61441840 | None:intergenic |
TCAAACCCTGGGATGTTTCC+CGG | 0.378883 | 2.1:-61439510 | MS.gene03141:CDS |
GTTGAACTTGTTGCTGCTGC+TGG | 0.379641 | 2.1:+61445856 | None:intergenic |
GAATTGGTGGTTCTGTTGCT+GGG | 0.384527 | 2.1:-61443245 | MS.gene03141:CDS |
TGAGCCAGATAGTGAACTTA+TGG | 0.387028 | 2.1:-61440310 | MS.gene03141:intron |
TAGATATTCCTTGAGGTAAA+GGG | 0.389373 | 2.1:+61445754 | None:intergenic |
CAACCGTACTCGACATTTCC+AGG | 0.391792 | 2.1:-61444607 | MS.gene03141:intron |
TGTGGTGGAGGTGGAGGTGG+TGG | 0.398389 | 2.1:+61439372 | None:intergenic |
CTACCACCTCTTGGTGCGTT+CGG | 0.404919 | 2.1:+61439420 | None:intergenic |
CTTCTTCATTGTCTTCAAAT+GGG | 0.407303 | 2.1:+61439853 | None:intergenic |
TATCGACAATCAGGCCCATT+AGG | 0.408920 | 2.1:+61446098 | None:intergenic |
CTCCCGGTCGACGAAGCTTC+CGG | 0.409834 | 2.1:-61449318 | MS.gene03141:CDS |
ATGGGCCTGATTGTCGATAT+AGG | 0.411252 | 2.1:-61446094 | MS.gene03141:CDS |
AAGCGAGAATGCCGATTTGT+CGG | 0.414926 | 2.1:-61449219 | MS.gene03141:CDS |
GCAGATAAGTAGAGATTGTC+AGG | 0.416631 | 2.1:-61440379 | MS.gene03141:intron |
CCTCTTGGTGCGTTCGGACC+TGG | 0.418017 | 2.1:+61439426 | None:intergenic |
CAAGGAAGAGGTAGGGGCAG+AGG | 0.419654 | 2.1:-61439768 | MS.gene03141:CDS |
TTGCCGGAAGCTTCGTCGAC+CGG | 0.420756 | 2.1:+61449315 | None:intergenic |
CTAGATATTCCTTGAGGTAA+AGG | 0.426065 | 2.1:+61445753 | None:intergenic |
AAGGGAGTGAATCCAGATAA+TGG | 0.426746 | 2.1:-61439897 | MS.gene03141:CDS |
TGCCAACTGCTCACCGATAG+AGG | 0.426963 | 2.1:+61440347 | None:intergenic |
GCATGCCTATATCGACAATC+AGG | 0.427943 | 2.1:+61446089 | None:intergenic |
TCTTGACTCTTACCCTGATC+TGG | 0.427989 | 2.1:+61439282 | None:intergenic |
GGTCCATATGGTCCTAGGTT+CGG | 0.430942 | 2.1:-61439582 | MS.gene03141:CDS |
CCTGGGATGTTTCCCGGTGG+TGG | 0.433343 | 2.1:-61439504 | MS.gene03141:CDS |
CGGAATGATAGGTATAGTTC+AGG | 0.433860 | 2.1:-61439306 | MS.gene03141:CDS |
GATGAAGAGGAGGAGAGCTT+TGG | 0.434723 | 2.1:-61439813 | MS.gene03141:CDS |
CAAGTGCAAAATCTTGCTAA+TGG | 0.435613 | 2.1:-61445807 | MS.gene03141:CDS |
CTCGGAACATCATGCCAGCT+GGG | 0.436761 | 2.1:+61439541 | None:intergenic |
GATGTTCGATTGGCTTGATT+GGG | 0.437627 | 2.1:+61445780 | None:intergenic |
CATACCATAAGTTCACTATC+TGG | 0.440113 | 2.1:+61440306 | None:intergenic |
TATAGTTAGAACCCCTTTGT+TGG | 0.441127 | 2.1:+61445973 | None:intergenic |
CTACCTCTTCCTTGAACAGC+TGG | 0.443773 | 2.1:+61439777 | None:intergenic |
CCTCGGAACATCATGCCAGC+TGG | 0.447772 | 2.1:+61439540 | None:intergenic |
GCAAAATTTCAATCCTCTGA+TGG | 0.449597 | 2.1:-61439685 | MS.gene03141:CDS |
TTTCTCTGTTAAGTGGTTGA+AGG | 0.452217 | 2.1:-61443178 | MS.gene03141:intron |
AAACCATTAGTTACAGAGTC+AGG | 0.456574 | 2.1:-61445885 | MS.gene03141:CDS |
TGAAGAACCTCTTCAATTGG+AGG | 0.457703 | 2.1:+61446047 | None:intergenic |
GTATAGTTCAGGACCAGATC+AGG | 0.461811 | 2.1:-61439295 | MS.gene03141:CDS |
GACCAAGTGATCGGAATGAT+AGG | 0.463237 | 2.1:-61439317 | MS.gene03141:CDS |
GACGTAATTTCTCTGTTAAG+TGG | 0.464059 | 2.1:-61443185 | MS.gene03141:CDS |
GCTGTAGGGCCAGCTGTTCA+AGG | 0.464279 | 2.1:-61439786 | MS.gene03141:CDS |
GTATGGAGAATGTCGTGAAC+AGG | 0.464320 | 2.1:-61449185 | MS.gene03141:CDS |
AGTCGCGGTTGCGGCTCCAT+TGG | 0.465448 | 2.1:+61449372 | None:intergenic |
TCACAAGTTTAACCAACAAA+GGG | 0.465473 | 2.1:-61445985 | MS.gene03141:CDS |
GATCGGGGTGGAGACGGCGG+CGG | 0.465703 | 2.1:+61449423 | None:intergenic |
CGAGGTCGACCCTCAAACCC+TGG | 0.466597 | 2.1:-61439522 | MS.gene03141:CDS |
CTTTACCTCAAGGAATATCT+AGG | 0.467981 | 2.1:-61445752 | MS.gene03141:intron |
CCACCACCGGGAAACATCCC+AGG | 0.469211 | 2.1:+61439504 | None:intergenic |
CCTCACATGCATCTTGGGCG+TGG | 0.469309 | 2.1:-61439729 | MS.gene03141:CDS |
AAGTAGAGATTGTCAGGAGC+TGG | 0.471206 | 2.1:-61440373 | MS.gene03141:CDS |
AGACAATGAAGAAGAGGAAG+AGG | 0.471242 | 2.1:-61439844 | MS.gene03141:CDS |
TTGACTGGCCTACCACCTCT+TGG | 0.471572 | 2.1:+61439411 | None:intergenic |
CGGTGTGTCGTCACTGGCTA+AGG | 0.473431 | 2.1:-61449291 | MS.gene03141:CDS |
CGAGAAGAAGAGAAAGCAAA+GGG | 0.473546 | 2.1:-61439915 | MS.gene03141:CDS |
AACAGATGGAGTCGCGGTTG+CGG | 0.476724 | 2.1:+61449363 | None:intergenic |
AGGAATCGGATTGGACGATC+GGG | 0.476823 | 2.1:+61449407 | None:intergenic |
AATTGTAAGAATATAAATGT+TGG | 0.477942 | 2.1:+61446018 | None:intergenic |
TCAATTGGAGGAGGAGGTCC+AGG | 0.478308 | 2.1:+61446059 | None:intergenic |
AGTGACGACACACCGTTTGC+CGG | 0.482207 | 2.1:+61449299 | None:intergenic |
TCCATACAATGAGAACTTAC+CGG | 0.482376 | 2.1:-61441828 | MS.gene03141:CDS |
ACCTCTTCAATTGGAGGAGG+AGG | 0.484094 | 2.1:+61446053 | None:intergenic |
CCCATAAAAGGACCGCGTCC+AGG | 0.488496 | 2.1:+61439462 | None:intergenic |
GGGAAACATCCCAGGGTTTG+AGG | 0.491155 | 2.1:+61439512 | None:intergenic |
TTAGTTACAGAGTCAGGAAA+TGG | 0.494582 | 2.1:-61445879 | MS.gene03141:CDS |
TGATACTGCATGTCATCATC+AGG | 0.498554 | 2.1:+61439237 | None:intergenic |
GGAAACATCCCAGGGTTTGA+GGG | 0.500927 | 2.1:+61439513 | None:intergenic |
TTCGATTGGCTTGATTGGGC+TGG | 0.502203 | 2.1:+61445784 | None:intergenic |
TGCCGGAAGCTTCGTCGACC+GGG | 0.502328 | 2.1:+61449316 | None:intergenic |
GAGTTGCAATCGTGAAAACT+TGG | 0.502415 | 2.1:-61444733 | MS.gene03141:CDS |
TTCAATCCTCTGATGGGCGA+TGG | 0.503316 | 2.1:-61439678 | MS.gene03141:CDS |
GGCAAACGGTGTGTCGTCAC+TGG | 0.503851 | 2.1:-61449297 | MS.gene03141:CDS |
TCGACGAAGCTTCCGGCAAA+CGG | 0.505502 | 2.1:-61449311 | MS.gene03141:CDS |
GGGCCAGCTGTTCAAGGAAG+AGG | 0.506255 | 2.1:-61439780 | MS.gene03141:CDS |
CCACCGAACCTAGGACCATA+TGG | 0.506705 | 2.1:+61439579 | None:intergenic |
GGAGGTGATTGCAGTGGCGG+CGG | 0.507353 | 2.1:+61449447 | None:intergenic |
TTGGACGATCGGGGTGGAGA+CGG | 0.508352 | 2.1:+61449417 | None:intergenic |
AGTCCTCAACTTCGATTTCG+AGG | 0.508501 | 2.1:-61449491 | MS.gene03141:CDS |
GCATACTAATGATGATATCA+AGG | 0.514229 | 2.1:-61449149 | MS.gene03141:CDS |
GAGAGCTTTGGTCAAGCTGT+AGG | 0.516424 | 2.1:-61439801 | MS.gene03141:CDS |
AGAGGAAGAAAGTGATGAAG+AGG | 0.516977 | 2.1:-61439826 | MS.gene03141:CDS |
GGAAGGTGGTAAGTAGGAAT+CGG | 0.518366 | 2.1:+61449393 | None:intergenic |
GGAAGAGGTAGGGGCAGAGG+AGG | 0.518803 | 2.1:-61439765 | MS.gene03141:CDS |
TAAAGGGGTTGATGTTCGAT+TGG | 0.521566 | 2.1:+61445770 | None:intergenic |
ACCATATGGACCAAAACCTC+GGG | 0.523745 | 2.1:+61439593 | None:intergenic |
TATAGGCATGCAAAATCTCC+TGG | 0.524122 | 2.1:-61446077 | MS.gene03141:CDS |
CTCAACTTCGATTTCGAGGG+CGG | 0.524533 | 2.1:-61449487 | MS.gene03141:CDS |
GCGGTTGCGGCTCCATTGGA+AGG | 0.525005 | 2.1:+61449376 | None:intergenic |
TAGGAATCGGATTGGACGAT+CGG | 0.525623 | 2.1:+61449406 | None:intergenic |
GTGATTGCAGTGGCGGCGGA+AGG | 0.526955 | 2.1:+61449451 | None:intergenic |
GGAAAAGATAATACCTTCAC+CGG | 0.531864 | 2.1:+61441809 | None:intergenic |
ATCTGGCATACCAAAACCAT+CGG | 0.531939 | 2.1:+61439632 | None:intergenic |
GCAAAGATGACATCCAGAAT+TGG | 0.534997 | 2.1:-61443261 | MS.gene03141:CDS |
CGTCGACCGGGAGCATTACC+GGG | 0.535042 | 2.1:+61449328 | None:intergenic |
ACGAGAAGAAGAGAAAGCAA+AGG | 0.536291 | 2.1:-61439916 | MS.gene03141:CDS |
CTCACAAGTTTAACCAACAA+AGG | 0.536291 | 2.1:-61445986 | MS.gene03141:CDS |
TCTGTTGCTGAACATACTCC+CGG | 0.537402 | 2.1:-61449346 | MS.gene03141:CDS |
TCTGCAAACCAAGGTGCGGT+TGG | 0.537410 | 2.1:-61445909 | MS.gene03141:CDS |
AATTGGTGGTTCTGTTGCTG+GGG | 0.537847 | 2.1:-61443244 | MS.gene03141:CDS |
CAAAATTTCAATCCTCTGAT+GGG | 0.538738 | 2.1:-61439684 | MS.gene03141:CDS |
GCTGTTCAAGGAAGAGGTAG+GGG | 0.539653 | 2.1:-61439774 | MS.gene03141:CDS |
GTCTGTACAACAAGGAGTAT+GGG | 0.539886 | 2.1:-61444706 | MS.gene03141:CDS |
CCAAAACCATCGGGTCCACC+AGG | 0.541684 | 2.1:+61439642 | None:intergenic |
CAGCTGTTCAAGGAAGAGGT+AGG | 0.542218 | 2.1:-61439776 | MS.gene03141:CDS |
GGAAGAAAGTGATGAAGAGG+AGG | 0.544461 | 2.1:-61439823 | MS.gene03141:CDS |
ATCGAAGTTGAGGACTCCTT+CGG | 0.545071 | 2.1:+61449498 | None:intergenic |
CCAAAATCACCACCGAACCT+AGG | 0.547709 | 2.1:+61439570 | None:intergenic |
ATTTGAAGACAATGAAGAAG+AGG | 0.549441 | 2.1:-61439850 | MS.gene03141:CDS |
TACGGACCTGGTGGACCCGA+TGG | 0.551614 | 2.1:-61439648 | MS.gene03141:CDS |
TCCTACTTACCACCTTCCAA+TGG | 0.551728 | 2.1:-61449388 | MS.gene03141:CDS |
TTTGGGATGATGATGAATCC+TGG | 0.551843 | 2.1:-61439480 | MS.gene03141:CDS |
TCCATTGGAAGGTGGTAAGT+AGG | 0.553309 | 2.1:+61449387 | None:intergenic |
TACCTATCATTCCGATCACT+TGG | 0.553384 | 2.1:+61439315 | None:intergenic |
ACCCTCTATCGGTGAGCAGT+TGG | 0.555558 | 2.1:-61440349 | MS.gene03141:CDS |
TCTCCGTGTCTTGACCGCCT+AGG | 0.556999 | 2.1:+61439150 | None:intergenic |
CATCATCCCAAATCCACCAC+CGG | 0.557200 | 2.1:+61439491 | None:intergenic |
GAAAAGTCTCAGTTTCCTCA+AGG | 0.558709 | 2.1:-61445939 | MS.gene03141:CDS |
AGCTGTTCAAGGAAGAGGTA+GGG | 0.558892 | 2.1:-61439775 | MS.gene03141:CDS |
CACGCCCAAGATGCATGTGA+GGG | 0.559255 | 2.1:+61439730 | None:intergenic |
CAATGAGAACTTACCGGTGA+AGG | 0.559575 | 2.1:-61441822 | MS.gene03141:intron |
AAGACATGCTCAGTCAAAGT+GGG | 0.562941 | 2.1:-61439263 | MS.gene03141:CDS |
GGAAACTGGAAATATGCTCA+TGG | 0.564153 | 2.1:-61443222 | MS.gene03141:CDS |
CAGGAGCTGGAACCCTCTAT+CGG | 0.564912 | 2.1:-61440360 | MS.gene03141:CDS |
GTGGTAAGTAGGAATCGGAT+TGG | 0.569036 | 2.1:+61449398 | None:intergenic |
GGTGGAGGTGGTGGAAACAT+CGG | 0.569998 | 2.1:+61439381 | None:intergenic |
CCACAAAATATGAACCGCAC+TGG | 0.571385 | 2.1:-61439354 | MS.gene03141:CDS |
AACATCGGAGGCATATTGAC+TGG | 0.571438 | 2.1:+61439396 | None:intergenic |
GACCATATGGACCAAAACCT+CGG | 0.572478 | 2.1:+61439592 | None:intergenic |
AGAGCTTTGGTCAAGCTGTA+GGG | 0.574219 | 2.1:-61439800 | MS.gene03141:CDS |
AAGGAGTATGGGCAACTCAA+AGG | 0.574768 | 2.1:-61444695 | MS.gene03141:CDS |
CCACGCCCAAGATGCATGTG+AGG | 0.577024 | 2.1:+61439729 | None:intergenic |
GGTGGAGGTGATTGCAGTGG+CGG | 0.577871 | 2.1:+61449444 | None:intergenic |
GTCCTCAACTTCGATTTCGA+GGG | 0.578584 | 2.1:-61449490 | MS.gene03141:CDS |
GAGATCAAAGACCAAGTGAT+CGG | 0.578889 | 2.1:-61439326 | MS.gene03141:CDS |
ATACCTGGAAATGTCGAGTA+CGG | 0.579334 | 2.1:+61444604 | None:intergenic |
AGAACCTCTTCAATTGGAGG+AGG | 0.582530 | 2.1:+61446050 | None:intergenic |
CATACTCCCGGTAATGCTCC+CGG | 0.583758 | 2.1:-61449334 | MS.gene03141:CDS |
TCGGAACATCATGCCAGCTG+GGG | 0.587325 | 2.1:+61439542 | None:intergenic |
TTTGCAGAATTAATTCCTTG+AGG | 0.587634 | 2.1:+61445924 | None:intergenic |
CAAGACATGCTCAGTCAAAG+TGG | 0.589412 | 2.1:-61439264 | MS.gene03141:CDS |
GCACCTAGGCGGTCAAGACA+CGG | 0.591297 | 2.1:-61439153 | MS.gene03141:CDS |
CGTGGAGCAAGACCGATCCA+TGG | 0.593454 | 2.1:-61439711 | MS.gene03141:CDS |
GACGATCGGGGTGGAGACGG+CGG | 0.596912 | 2.1:+61449420 | None:intergenic |
ATGGGCGATGGATTATCCTA+CGG | 0.597859 | 2.1:-61439666 | MS.gene03141:CDS |
TCTGGCATACCAAAACCATC+GGG | 0.598006 | 2.1:+61439633 | None:intergenic |
CTAAGGAGTTTGTGTATGAA+AGG | 0.598009 | 2.1:-61449274 | MS.gene03141:CDS |
TATAGTTCAGGACCAGATCA+GGG | 0.598515 | 2.1:-61439294 | MS.gene03141:CDS |
CGATAGTGAAAGTGAAGATG+AGG | 0.599130 | 2.1:-61439175 | MS.gene03141:CDS |
GAGGTCGACCCTCAAACCCT+GGG | 0.599761 | 2.1:-61439521 | MS.gene03141:CDS |
AGATATTCCTTGAGGTAAAG+GGG | 0.599791 | 2.1:+61445755 | None:intergenic |
CGCCCAAGATGCATGTGAGG+GGG | 0.601403 | 2.1:+61439732 | None:intergenic |
CGCCCTCGAAATCGAAGTTG+AGG | 0.602456 | 2.1:+61449488 | None:intergenic |
GGAGTATGTTCAGCAACAGA+TGG | 0.603973 | 2.1:+61449349 | None:intergenic |
ATCTGGCTCAGTATATAGCA+AGG | 0.604895 | 2.1:+61440323 | None:intergenic |
TTCCAAATGGAGGATTCCGA+AGG | 0.608048 | 2.1:-61449514 | None:intergenic |
ACCTCCTCCTCCAATTGAAG+AGG | 0.608458 | 2.1:-61446054 | MS.gene03141:CDS |
GGATTATCCTACGGACCTGG+TGG | 0.610357 | 2.1:-61439657 | MS.gene03141:CDS |
AAATGAAGCATTCGACTCTG+TGG | 0.611269 | 2.1:-61444655 | MS.gene03141:CDS |
GATAATCCATCGCCCATCAG+AGG | 0.611995 | 2.1:+61439672 | None:intergenic |
CCATATGGTCCTAGGTTCGG+TGG | 0.617418 | 2.1:-61439579 | MS.gene03141:CDS |
ACAAGTCACAGCAAGATGAT+CGG | 0.617719 | 2.1:-61439203 | MS.gene03141:CDS |
CCAGCTGGCATGATGTTCCG+AGG | 0.617820 | 2.1:-61439540 | MS.gene03141:CDS |
ACGCCCAAGATGCATGTGAG+GGG | 0.617863 | 2.1:+61439731 | None:intergenic |
GCCAACTGCTCACCGATAGA+GGG | 0.624592 | 2.1:+61440348 | None:intergenic |
ACATCAACCCCTTTACCTCA+AGG | 0.625692 | 2.1:-61445762 | MS.gene03141:CDS |
GTATGAAAGGTGAAGCGTGT+GGG | 0.626726 | 2.1:-61449261 | MS.gene03141:CDS |
CAGGGTTTGAGGGTCGACCT+CGG | 0.627119 | 2.1:+61439523 | None:intergenic |
CGAACGCACCAAGAGGTGGT+AGG | 0.627845 | 2.1:-61439419 | MS.gene03141:CDS |
ATCATCCCAAATCCACCACC+GGG | 0.628611 | 2.1:+61439492 | None:intergenic |
GGAGGTGGTGGAAACATCGG+AGG | 0.628646 | 2.1:+61439384 | None:intergenic |
AAGATGACATCCAGAATTGG+TGG | 0.629196 | 2.1:-61443258 | MS.gene03141:CDS |
GATGGATTATCCTACGGACC+TGG | 0.631297 | 2.1:-61439660 | MS.gene03141:CDS |
CGGAACATCATGCCAGCTGG+GGG | 0.631408 | 2.1:+61439543 | None:intergenic |
CTGGAAATATGCTCATGGAA+CGG | 0.636269 | 2.1:-61443217 | MS.gene03141:CDS |
AGACATGCTCAGTCAAAGTG+GGG | 0.641645 | 2.1:-61439262 | MS.gene03141:CDS |
ATTGGTGGTTCTGTTGCTGG+GGG | 0.642974 | 2.1:-61443243 | MS.gene03141:CDS |
GGTCCGAACGCACCAAGAGG+TGG | 0.645123 | 2.1:-61439423 | MS.gene03141:CDS |
ATCGGATTGGACGATCGGGG+TGG | 0.646967 | 2.1:+61449411 | None:intergenic |
GGAATTAATTCTGCAAACCA+AGG | 0.649467 | 2.1:-61445918 | MS.gene03141:CDS |
GGCGGTGGAGGTGATTGCAG+TGG | 0.649508 | 2.1:+61449441 | None:intergenic |
GGAATCGGATTGGACGATCG+GGG | 0.649563 | 2.1:+61449408 | None:intergenic |
TAATTCTGCAAACCAAGGTG+CGG | 0.649941 | 2.1:-61445913 | MS.gene03141:CDS |
GTTGCGGCTCCATTGGAAGG+TGG | 0.651243 | 2.1:+61449379 | None:intergenic |
TAGGCGGTCAAGACACGGAG+AGG | 0.652708 | 2.1:-61439148 | MS.gene03141:CDS |
ATCGGGTCCACCAGGTCCGT+AGG | 0.656280 | 2.1:+61439650 | None:intergenic |
CACAAGTTTAACCAACAAAG+GGG | 0.657204 | 2.1:-61445984 | MS.gene03141:CDS |
CCAGGTCCGAACGCACCAAG+AGG | 0.659891 | 2.1:-61439426 | MS.gene03141:CDS |
TTCAGCAACAGATGGAGTCG+CGG | 0.661796 | 2.1:+61449357 | None:intergenic |
AAAGTGAAGATGAGGCACCT+AGG | 0.663202 | 2.1:-61439167 | MS.gene03141:CDS |
TGTATGAAAGGTGAAGCGTG+TGG | 0.667628 | 2.1:-61449262 | MS.gene03141:CDS |
GATGACATGCAGTATCAGCA+AGG | 0.670720 | 2.1:-61439231 | MS.gene03141:CDS |
GGGGCAGAGGAGGTATGATG+TGG | 0.674845 | 2.1:-61439755 | MS.gene03141:CDS |
CACCACCGGGAAACATCCCA+GGG | 0.675625 | 2.1:+61439505 | None:intergenic |
AGGCGGTCAAGACACGGAGA+GGG | 0.684082 | 2.1:-61439147 | MS.gene03141:CDS |
TTGGAGTTGTCTGTACAACA+AGG | 0.692074 | 2.1:-61444714 | MS.gene03141:CDS |
AACCCTGGGATGTTTCCCGG+TGG | 0.692839 | 2.1:-61439507 | MS.gene03141:CDS |
GACATGCTCAGTCAAAGTGG+GGG | 0.694693 | 2.1:-61439261 | MS.gene03141:CDS |
ATGATGATGAATCCTGGACG+CGG | 0.713076 | 2.1:-61439474 | MS.gene03141:CDS |
ACACACCTAGATATTCCTTG+AGG | 0.718712 | 2.1:+61445747 | None:intergenic |
GGAGTGAATCCAGATAATGG+AGG | 0.727786 | 2.1:-61439894 | MS.gene03141:CDS |
GTGAAGATGAGGCACCTAGG+CGG | 0.740940 | 2.1:-61439164 | MS.gene03141:CDS |
CCATATGGACCAAAACCTCG+GGG | 0.759985 | 2.1:+61439594 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 61439122 | 61449530 | 61439122 | ID=MS.gene03141 |
chr2.1 | mRNA | 61439122 | 61449530 | 61439122 | ID=MS.gene03141.t1;Parent=MS.gene03141 |
chr2.1 | exon | 61449139 | 61449530 | 61449139 | ID=MS.gene03141.t1.exon1;Parent=MS.gene03141.t1 |
chr2.1 | CDS | 61449139 | 61449530 | 61449139 | ID=cds.MS.gene03141.t1;Parent=MS.gene03141.t1 |
chr2.1 | exon | 61445753 | 61446139 | 61445753 | ID=MS.gene03141.t1.exon2;Parent=MS.gene03141.t1 |
chr2.1 | CDS | 61445753 | 61446139 | 61445753 | ID=cds.MS.gene03141.t1;Parent=MS.gene03141.t1 |
chr2.1 | exon | 61444608 | 61444770 | 61444608 | ID=MS.gene03141.t1.exon3;Parent=MS.gene03141.t1 |
chr2.1 | CDS | 61444608 | 61444770 | 61444608 | ID=cds.MS.gene03141.t1;Parent=MS.gene03141.t1 |
chr2.1 | exon | 61443179 | 61443289 | 61443179 | ID=MS.gene03141.t1.exon4;Parent=MS.gene03141.t1 |
chr2.1 | CDS | 61443179 | 61443289 | 61443179 | ID=cds.MS.gene03141.t1;Parent=MS.gene03141.t1 |
chr2.1 | exon | 61441823 | 61441891 | 61441823 | ID=MS.gene03141.t1.exon5;Parent=MS.gene03141.t1 |
chr2.1 | CDS | 61441823 | 61441891 | 61441823 | ID=cds.MS.gene03141.t1;Parent=MS.gene03141.t1 |
chr2.1 | exon | 61440311 | 61440397 | 61440311 | ID=MS.gene03141.t1.exon6;Parent=MS.gene03141.t1 |
chr2.1 | CDS | 61440311 | 61440397 | 61440311 | ID=cds.MS.gene03141.t1;Parent=MS.gene03141.t1 |
chr2.1 | exon | 61439122 | 61439964 | 61439122 | ID=MS.gene03141.t1.exon7;Parent=MS.gene03141.t1 |
chr2.1 | CDS | 61439122 | 61439964 | 61439122 | ID=cds.MS.gene03141.t1;Parent=MS.gene03141.t1 |
Gene Sequence |
Protein sequence |