Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031483.t1 | AES89947.1 | 97.8 | 537 | 12 | 0 | 3 | 539 | 4 | 540 | 2.40E-307 | 1063.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031483.t1 | Q75BF1 | 41.1 | 73 | 42 | 1 | 323 | 394 | 336 | 408 | 3.3e-10 | 68.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031483.t1 | G7JG98 | 97.8 | 537 | 12 | 0 | 3 | 539 | 4 | 540 | 1.8e-307 | 1063.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene031483.t1 | TR | SET |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031483.t1 | MTR_4g082140 | 97.584 | 538 | 13 | 0 | 2 | 539 | 3 | 540 | 0.0 | 1082 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031483.t1 | AT1G26760 | 58.254 | 527 | 215 | 3 | 10 | 532 | 17 | 542 | 0.0 | 602 |
Find 133 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGAGCTTGCTGAATTTAT+TGG | 0.149845 | 4.2:+27655370 | MS.gene031483:CDS |
| TGCGATGGAGAGGAGTATTT+TGG | 0.176280 | 4.2:+27655489 | MS.gene031483:CDS |
| GGTTAAGTTGTTGGCTATAT+TGG | 0.205927 | 4.2:+27655729 | MS.gene031483:CDS |
| TGCATGTACTCTTCTTCTTC+TGG | 0.230924 | 4.2:-27654875 | None:intergenic |
| TGATGCTGGGTCTTTGATTT+TGG | 0.235068 | 4.2:+27655453 | MS.gene031483:CDS |
| TTGTCTTAATAGATATTCTA+TGG | 0.274950 | 4.2:+27655186 | MS.gene031483:CDS |
| TGGCAGTGGTGGTGGAAATT+TGG | 0.287633 | 4.2:+27656356 | MS.gene031483:CDS |
| TCGCTATATTCGGAGGCTTA+TGG | 0.291838 | 4.2:+27656198 | MS.gene031483:CDS |
| AACAGCTATGCTTGAGAATC+AGG | 0.300867 | 4.2:+27655225 | MS.gene031483:CDS |
| ATGCGAGGCGGTTGCATGTT+GGG | 0.304086 | 4.2:+27655869 | MS.gene031483:CDS |
| TCTGCATTTCCCTCTGCAAC+CGG | 0.305823 | 4.2:+27655047 | MS.gene031483:CDS |
| GATACTTGAGAGCTTCATTT+TGG | 0.314098 | 4.2:+27656175 | MS.gene031483:CDS |
| TTGATTGGTAAATTGTCAAT+TGG | 0.316106 | 4.2:+27655610 | MS.gene031483:CDS |
| TGATTGGTAAATTGTCAATT+GGG | 0.339421 | 4.2:+27655611 | MS.gene031483:CDS |
| AATCTCCTTCACTTCTTGCT+TGG | 0.343179 | 4.2:-27656058 | None:intergenic |
| GATGAAAAGCTCTGTTGCTT+TGG | 0.360086 | 4.2:-27654909 | None:intergenic |
| TGGTGAAGTGGGTTGGGGTG+TGG | 0.372932 | 4.2:-27655004 | None:intergenic |
| ATCGATGGATCTTTCTGATT+GGG | 0.373282 | 4.2:+27655321 | MS.gene031483:CDS |
| TTTGAATGGGTTTCCTGGTA+AGG | 0.385478 | 4.2:+27655345 | MS.gene031483:CDS |
| CGAGGATGTTGAGATTGATA+TGG | 0.387279 | 4.2:+27655708 | MS.gene031483:CDS |
| ATTGTTATGGTGTTGGGCTC+TGG | 0.390152 | 4.2:+27655809 | MS.gene031483:CDS |
| TGCTGTTGAGATTAGAAAAT+CGG | 0.393927 | 4.2:+27655393 | MS.gene031483:CDS |
| GATCGATGGATCTTTCTGAT+TGG | 0.394895 | 4.2:+27655320 | MS.gene031483:CDS |
| TTTGATGGTGAAGTGGGTTG+GGG | 0.398288 | 4.2:-27655009 | None:intergenic |
| ACATGCAACCGCCTCGCATT+AGG | 0.405164 | 4.2:-27655865 | None:intergenic |
| CGGAGAGGTGTATGAAAAGA+TGG | 0.420346 | 4.2:+27656223 | MS.gene031483:CDS |
| CTCTTATTCAAGGGAGAAAG+TGG | 0.422699 | 4.2:-27655961 | None:intergenic |
| AAGAGTGATGAAATGGGAAT+AGG | 0.425368 | 4.2:-27654960 | None:intergenic |
| TACCTGTTGTTGATCTGTTT+AGG | 0.433162 | 4.2:+27655656 | MS.gene031483:CDS |
| TTTGAGTGAGGATACTCAAT+TGG | 0.433474 | 4.2:+27655522 | MS.gene031483:CDS |
| AGGAAGAATAATGATTGTTA+TGG | 0.434601 | 4.2:+27655796 | MS.gene031483:CDS |
| AATGCGAGGCGGTTGCATGT+TGG | 0.436488 | 4.2:+27655868 | MS.gene031483:CDS |
| TTCAAGAGTCTTGTTTGTAA+AGG | 0.438253 | 4.2:+27655151 | MS.gene031483:CDS |
| TGGTTTGGTGTATAAGTTTG+AGG | 0.439146 | 4.2:+27656113 | MS.gene031483:CDS |
| TTCACCTCACCAACATTCTC+AGG | 0.445472 | 4.2:-27655679 | None:intergenic |
| GTGTAAGAGGTGTAAGTTTG+AGG | 0.445952 | 4.2:+27656020 | MS.gene031483:CDS |
| CAGGGTGCTTAAGATCTTGA+TGG | 0.447688 | 4.2:+27656311 | MS.gene031483:CDS |
| CACAAGACTAGGAATTTGAT+TGG | 0.450988 | 4.2:+27655595 | MS.gene031483:CDS |
| AGGGATGGATGTAGGTGGTT+TGG | 0.454334 | 4.2:+27656098 | MS.gene031483:CDS |
| GGAACTGTGAAATGCTTGTT+GGG | 0.457834 | 4.2:+27655254 | MS.gene031483:CDS |
| ATTGAGATTGGTATTGAAAG+AGG | 0.460526 | 4.2:+27656078 | MS.gene031483:CDS |
| GGGTGCAAAGAGTGATGAAA+TGG | 0.462864 | 4.2:-27654967 | None:intergenic |
| AAAAGAATTGTCTGTGACAT+GGG | 0.463603 | 4.2:+27655984 | MS.gene031483:CDS |
| GATTGATATGGTTAAGTTGT+TGG | 0.464137 | 4.2:+27655720 | MS.gene031483:CDS |
| ATGTAGTGGGAGGTGATCAC+AGG | 0.469829 | 4.2:+27656292 | MS.gene031483:CDS |
| AAAGGCGGTGGCAGTGGTGG+TGG | 0.469890 | 4.2:+27656348 | MS.gene031483:CDS |
| GAAGTGAAGGAGATTGAGAT+TGG | 0.472610 | 4.2:+27656066 | MS.gene031483:CDS |
| TGCGAGGCGGTTGCATGTTG+GGG | 0.475570 | 4.2:+27655870 | MS.gene031483:CDS |
| ATAATGATTGTTATGGTGTT+GGG | 0.477794 | 4.2:+27655803 | MS.gene031483:CDS |
| TGTAAGAGGTGTAAGTTTGA+GGG | 0.479731 | 4.2:+27656021 | MS.gene031483:CDS |
| AAGTTAGCAAGAGAAGTGTA+TGG | 0.484594 | 4.2:+27656396 | MS.gene031483:CDS |
| GGGAAGGAGAATTCCGGCAT+TGG | 0.484683 | 4.2:+27656245 | MS.gene031483:CDS |
| CACGAGTGATTTATAAATGA+AGG | 0.487421 | 4.2:-27655838 | None:intergenic |
| GAAATGGGAATAGGTTTCAA+TGG | 0.490510 | 4.2:-27654951 | None:intergenic |
| GGAATAGGTTTCAATGGCAT+TGG | 0.490849 | 4.2:-27654945 | None:intergenic |
| AATAATGATTGTTATGGTGT+TGG | 0.491400 | 4.2:+27655802 | MS.gene031483:CDS |
| AAGAGAAAAGGCGGTGGCAG+TGG | 0.492447 | 4.2:+27656342 | MS.gene031483:CDS |
| GGGAACTGTGAAATGCTTGT+TGG | 0.492814 | 4.2:+27655253 | MS.gene031483:CDS |
| AAGAGAAGTGTATGGGAAGG+TGG | 0.498751 | 4.2:+27656404 | MS.gene031483:CDS |
| GGATTCATTGCAAGTGTAAG+AGG | 0.499575 | 4.2:+27656007 | MS.gene031483:CDS |
| GCTCTGTTGCTTTGGATCTG+AGG | 0.500867 | 4.2:-27654901 | None:intergenic |
| TTGAGATTGGTATTGAAAGA+GGG | 0.501722 | 4.2:+27656079 | MS.gene031483:CDS |
| TTGAGGAACAAATGAAGAGA+TGG | 0.502193 | 4.2:+27656130 | MS.gene031483:CDS |
| GCTTCAAGAGATTTGAAAGC+TGG | 0.503483 | 4.2:+27655910 | MS.gene031483:CDS |
| ATGGAGGAATTGAAGAGAAA+AGG | 0.506698 | 4.2:+27656330 | MS.gene031483:CDS |
| AAGATGGGGAAGGAGAATTC+CGG | 0.510697 | 4.2:+27656239 | MS.gene031483:CDS |
| GGAGAGGTGTATGAAAAGAT+GGG | 0.512728 | 4.2:+27656224 | MS.gene031483:CDS |
| ATTGTCAATTGGGGAAAATG+AGG | 0.513846 | 4.2:+27655621 | MS.gene031483:CDS |
| AGGATACTCAATTGGTTATG+TGG | 0.519773 | 4.2:+27655530 | MS.gene031483:CDS |
| ATATTCGGAGGCTTATGGTT+CGG | 0.520594 | 4.2:+27656203 | MS.gene031483:CDS |
| TTGCTTCGGCCCGGTTGCAG+AGG | 0.520596 | 4.2:-27655057 | None:intergenic |
| GCAAGCTCAGGAGCCTTACC+AGG | 0.521541 | 4.2:-27655358 | None:intergenic |
| GGTTACTAAGGCGGTTGCGA+TGG | 0.521998 | 4.2:+27655474 | MS.gene031483:CDS |
| ATGAAGAGATGGAAGGTGAG+GGG | 0.523693 | 4.2:+27656141 | MS.gene031483:CDS |
| GGCCTAAACAGATCAACAAC+AGG | 0.525052 | 4.2:-27655658 | None:intergenic |
| CCAATAAATTCAGCAAGCTC+AGG | 0.530739 | 4.2:-27655370 | None:intergenic |
| CTGCATTTCCCTCTGCAACC+GGG | 0.537433 | 4.2:+27655048 | MS.gene031483:CDS |
| AAAATCGGAGATTAGTGGGC+GGG | 0.537459 | 4.2:+27655408 | MS.gene031483:CDS |
| GCTATGAAGAATGTTGATGC+TGG | 0.538553 | 4.2:+27655439 | MS.gene031483:CDS |
| AAATCGGAGATTAGTGGGCG+GGG | 0.539278 | 4.2:+27655409 | MS.gene031483:CDS |
| GATTGGTAAATTGTCAATTG+GGG | 0.539434 | 4.2:+27655612 | MS.gene031483:CDS |
| CTAAAGCAGAGTTGAATTCG+CGG | 0.539490 | 4.2:-27655090 | None:intergenic |
| AGCAAGAGAAGTGTATGGGA+AGG | 0.541807 | 4.2:+27656401 | MS.gene031483:CDS |
| TGATAGCATTACAGATGTAG+TGG | 0.547590 | 4.2:+27656278 | MS.gene031483:CDS |
| TTTATCGAGGACTGGATCGA+TGG | 0.547984 | 4.2:+27655306 | MS.gene031483:CDS |
| TGCTTCGGCCCGGTTGCAGA+GGG | 0.548209 | 4.2:-27655056 | None:intergenic |
| TCAACCACTGCATCCAATGC+CGG | 0.554486 | 4.2:-27656258 | None:intergenic |
| TGGGGTGTGGAAGAGAAAGA+TGG | 0.555098 | 4.2:-27654991 | None:intergenic |
| AGAAAAGGCGGTGGCAGTGG+TGG | 0.555153 | 4.2:+27656345 | MS.gene031483:CDS |
| ATTAGAAAATCGGAGATTAG+TGG | 0.560856 | 4.2:+27655403 | MS.gene031483:CDS |
| AATGAAGAGATGGAAGGTGA+GGG | 0.561622 | 4.2:+27656140 | MS.gene031483:CDS |
| ATTGAAAGAGGGATGGATGT+AGG | 0.565884 | 4.2:+27656090 | MS.gene031483:CDS |
| ATCGGAGATTAGTGGGCGGG+GGG | 0.568384 | 4.2:+27655411 | MS.gene031483:CDS |
| TGAAGAGATGGAAGGTGAGG+GGG | 0.569302 | 4.2:+27656142 | MS.gene031483:CDS |
| GATTGGTATTGAAAGAGGGA+TGG | 0.569642 | 4.2:+27656083 | MS.gene031483:CDS |
| CTATGAAGAATGTTGATGCT+GGG | 0.576287 | 4.2:+27655440 | MS.gene031483:CDS |
| AGTTAGCAAGAGAAGTGTAT+GGG | 0.577336 | 4.2:+27656397 | MS.gene031483:CDS |
| CTGTTTAGGCCTGAGAATGT+TGG | 0.579614 | 4.2:+27655670 | MS.gene031483:CDS |
| GATAGCATTACAGATGTAGT+GGG | 0.579758 | 4.2:+27656279 | MS.gene031483:CDS |
| TTAGAAAATCGGAGATTAGT+GGG | 0.580312 | 4.2:+27655404 | MS.gene031483:CDS |
| AAATGAAGAGATGGAAGGTG+AGG | 0.581313 | 4.2:+27656139 | MS.gene031483:CDS |
| TGGTGGTGGAAATTTGGAGA+TGG | 0.584813 | 4.2:+27656362 | MS.gene031483:CDS |
| GGTGTATGAAAAGATGGGGA+AGG | 0.584919 | 4.2:+27656229 | MS.gene031483:CDS |
| AATCGGAGATTAGTGGGCGG+GGG | 0.588641 | 4.2:+27655410 | MS.gene031483:CDS |
| GTAAGAGGTGTAAGTTTGAG+GGG | 0.591209 | 4.2:+27656022 | MS.gene031483:CDS |
| GTTATCCAAGCAAGAAGTGA+AGG | 0.591908 | 4.2:+27656053 | MS.gene031483:CDS |
| AATTCCGGCATTGGATGCAG+TGG | 0.593389 | 4.2:+27656254 | MS.gene031483:CDS |
| GAAAGAGGGATGGATGTAGG+TGG | 0.596582 | 4.2:+27656093 | MS.gene031483:CDS |
| GGTGCAAAGAGTGATGAAAT+GGG | 0.597081 | 4.2:-27654966 | None:intergenic |
| TGCTTGAGAATCAGGCAAGT+GGG | 0.601634 | 4.2:+27655233 | MS.gene031483:CDS |
| GGGAGGTAAAGATTTGAGTG+AGG | 0.601669 | 4.2:+27655510 | MS.gene031483:CDS |
| AAAGAATTGTCTGTGACATG+GGG | 0.611357 | 4.2:+27655985 | MS.gene031483:CDS |
| TAAGAGGTGTAAGTTTGAGG+GGG | 0.611503 | 4.2:+27656023 | MS.gene031483:CDS |
| GAAAAGAATTGTCTGTGACA+TGG | 0.612754 | 4.2:+27655983 | MS.gene031483:CDS |
| CTAAGGCGGTTGCGATGGAG+AGG | 0.616650 | 4.2:+27655479 | MS.gene031483:CDS |
| ATGCTTGAGAATCAGGCAAG+TGG | 0.617092 | 4.2:+27655232 | MS.gene031483:CDS |
| GGTGTGGAAGAGAAAGATGG+TGG | 0.630801 | 4.2:-27654988 | None:intergenic |
| CGGAGGCTTATGGTTCGGAG+AGG | 0.648399 | 4.2:+27656208 | MS.gene031483:CDS |
| ACTCGTGTTGTCCTAATGCG+AGG | 0.649170 | 4.2:+27655854 | MS.gene031483:CDS |
| GAGGAATTGAAGAGAAAAGG+CGG | 0.653690 | 4.2:+27656333 | MS.gene031483:CDS |
| GGAACAAATGAAGAGATGGA+AGG | 0.654855 | 4.2:+27656134 | MS.gene031483:CDS |
| GAGAGGTGTATGAAAAGATG+GGG | 0.655954 | 4.2:+27656225 | MS.gene031483:CDS |
| TGTAGTGGGAGGTGATCACA+GGG | 0.656015 | 4.2:+27656293 | MS.gene031483:CDS |
| GTGTGGAAGAGAAAGATGGT+GGG | 0.659362 | 4.2:-27654987 | None:intergenic |
| GGTGCTTAAGATCTTGATGG+AGG | 0.683661 | 4.2:+27656314 | MS.gene031483:CDS |
| AGCATTACAGATGTAGTGGG+AGG | 0.687102 | 4.2:+27656282 | MS.gene031483:CDS |
| TAGGCCTGAGAATGTTGGTG+AGG | 0.688195 | 4.2:+27655675 | MS.gene031483:CDS |
| AAGAATTGTCTGTGACATGG+GGG | 0.694508 | 4.2:+27655986 | MS.gene031483:CDS |
| GAATTGAAGAGAAAAGGCGG+TGG | 0.699050 | 4.2:+27656336 | MS.gene031483:CDS |
| CGTGTTGTCCTAATGCGAGG+CGG | 0.716928 | 4.2:+27655857 | MS.gene031483:CDS |
| GAAAATCGGAGATTAGTGGG+CGG | 0.725116 | 4.2:+27655407 | MS.gene031483:CDS |
| GGATGTTAATTCTCTCACTG+AGG | 0.729479 | 4.2:+27655750 | MS.gene031483:CDS |
| TGGTGAGGTGAATTCAAACG+AGG | 0.805283 | 4.2:+27655690 | MS.gene031483:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTCTTAATAGATATTCTA+TGG | + | chr4.2:27655186-27655205 | MS.gene031483:CDS | 20.0% |
| !!! | AAAAGTTTGAATTTTTATCG+AGG | + | chr4.2:27655293-27655312 | MS.gene031483:CDS | 20.0% |
| !!! | AATTCTTTTCTCTTATTCAA+GGG | - | chr4.2:27655973-27655992 | None:intergenic | 20.0% |
| ! | AATAATGATTGTTATGGTGT+TGG | + | chr4.2:27655802-27655821 | MS.gene031483:CDS | 25.0% |
| ! | AGGAAGAATAATGATTGTTA+TGG | + | chr4.2:27655796-27655815 | MS.gene031483:CDS | 25.0% |
| ! | ATAATGATTGTTATGGTGTT+GGG | + | chr4.2:27655803-27655822 | MS.gene031483:CDS | 25.0% |
| ! | TGATTGGTAAATTGTCAATT+GGG | + | chr4.2:27655611-27655630 | MS.gene031483:CDS | 25.0% |
| ! | TTGATTGGTAAATTGTCAAT+TGG | + | chr4.2:27655610-27655629 | MS.gene031483:CDS | 25.0% |
| !! | CAATTCTTTTCTCTTATTCA+AGG | - | chr4.2:27655974-27655993 | None:intergenic | 25.0% |
| AAAAGAATTGTCTGTGACAT+GGG | + | chr4.2:27655984-27656003 | MS.gene031483:CDS | 30.0% | |
| ATTAGAAAATCGGAGATTAG+TGG | + | chr4.2:27655403-27655422 | MS.gene031483:CDS | 30.0% | |
| CACGAGTGATTTATAAATGA+AGG | - | chr4.2:27655841-27655860 | None:intergenic | 30.0% | |
| GATTGGTAAATTGTCAATTG+GGG | + | chr4.2:27655612-27655631 | MS.gene031483:CDS | 30.0% | |
| TGCTGTTGAGATTAGAAAAT+CGG | + | chr4.2:27655393-27655412 | MS.gene031483:CDS | 30.0% | |
| TTAGAAAATCGGAGATTAGT+GGG | + | chr4.2:27655404-27655423 | MS.gene031483:CDS | 30.0% | |
| ! | ATTGAGATTGGTATTGAAAG+AGG | + | chr4.2:27656078-27656097 | MS.gene031483:CDS | 30.0% |
| ! | GATTGATATGGTTAAGTTGT+TGG | + | chr4.2:27655720-27655739 | MS.gene031483:CDS | 30.0% |
| ! | GTGATTTATGAAGCTTTTGA+TGG | - | chr4.2:27655027-27655046 | None:intergenic | 30.0% |
| ! | TTGAGATTGGTATTGAAAGA+GGG | + | chr4.2:27656079-27656098 | MS.gene031483:CDS | 30.0% |
| ! | TTTGAATTTTTATCGAGGAC+TGG | + | chr4.2:27655298-27655317 | MS.gene031483:CDS | 30.0% |
| !! | TTAAAAAGTGTCACAAGACT+AGG | + | chr4.2:27655584-27655603 | MS.gene031483:CDS | 30.0% |
| !! | TTCAAGAGTCTTGTTTGTAA+AGG | + | chr4.2:27655151-27655170 | MS.gene031483:CDS | 30.0% |
| !! | TTCATTTTGGTCGCTATATT+CGG | + | chr4.2:27656188-27656207 | MS.gene031483:CDS | 30.0% |
| !!! | GTCTTTGATTTTGGTTACTA+AGG | + | chr4.2:27655462-27655481 | MS.gene031483:CDS | 30.0% |
| !!! | TTTCTGATTGGGTTTTGAAT+GGG | + | chr4.2:27655332-27655351 | MS.gene031483:CDS | 30.0% |
| !!! | TTTGATTTTGGTTACTAAGG+CGG | + | chr4.2:27655465-27655484 | MS.gene031483:CDS | 30.0% |
| AAAGAATTGTCTGTGACATG+GGG | + | chr4.2:27655985-27656004 | MS.gene031483:CDS | 35.0% | |
| AAGAGTGATGAAATGGGAAT+AGG | - | chr4.2:27654963-27654982 | None:intergenic | 35.0% | |
| AGGATACTCAATTGGTTATG+TGG | + | chr4.2:27655530-27655549 | MS.gene031483:CDS | 35.0% | |
| ATCGATGGATCTTTCTGATT+GGG | + | chr4.2:27655321-27655340 | MS.gene031483:CDS | 35.0% | |
| ATGGAGGAATTGAAGAGAAA+AGG | + | chr4.2:27656330-27656349 | MS.gene031483:CDS | 35.0% | |
| ATTGTCAATTGGGGAAAATG+AGG | + | chr4.2:27655621-27655640 | MS.gene031483:CDS | 35.0% | |
| CACAAGACTAGGAATTTGAT+TGG | + | chr4.2:27655595-27655614 | MS.gene031483:CDS | 35.0% | |
| CTATGAAGAATGTTGATGCT+GGG | + | chr4.2:27655440-27655459 | MS.gene031483:CDS | 35.0% | |
| GAAAAGAATTGTCTGTGACA+TGG | + | chr4.2:27655983-27656002 | MS.gene031483:CDS | 35.0% | |
| GAAATGGGAATAGGTTTCAA+TGG | - | chr4.2:27654954-27654973 | None:intergenic | 35.0% | |
| GATAGCATTACAGATGTAGT+GGG | + | chr4.2:27656279-27656298 | MS.gene031483:CDS | 35.0% | |
| TACCTGTTGTTGATCTGTTT+AGG | + | chr4.2:27655656-27655675 | MS.gene031483:CDS | 35.0% | |
| TGATAGCATTACAGATGTAG+TGG | + | chr4.2:27656278-27656297 | MS.gene031483:CDS | 35.0% | |
| TTGAGGAACAAATGAAGAGA+TGG | + | chr4.2:27656130-27656149 | MS.gene031483:CDS | 35.0% | |
| TTTGAGTGAGGATACTCAAT+TGG | + | chr4.2:27655522-27655541 | MS.gene031483:CDS | 35.0% | |
| ! | AAGTTAGCAAGAGAAGTGTA+TGG | + | chr4.2:27656396-27656415 | MS.gene031483:CDS | 35.0% |
| ! | AGCTTTTCATCAGAGAAGAA+TGG | + | chr4.2:27654921-27654940 | MS.gene031483:CDS | 35.0% |
| ! | AGTTAGCAAGAGAAGTGTAT+GGG | + | chr4.2:27656397-27656416 | MS.gene031483:CDS | 35.0% |
| ! | CAGTTTCAGCTAATGTTTTG+AGG | + | chr4.2:27655776-27655795 | MS.gene031483:CDS | 35.0% |
| ! | GATACTTGAGAGCTTCATTT+TGG | + | chr4.2:27656175-27656194 | MS.gene031483:CDS | 35.0% |
| ! | GGTTAAGTTGTTGGCTATAT+TGG | + | chr4.2:27655729-27655748 | MS.gene031483:CDS | 35.0% |
| ! | TGTAAGAGGTGTAAGTTTGA+GGG | + | chr4.2:27656021-27656040 | MS.gene031483:CDS | 35.0% |
| !! | TGGTTTGGTGTATAAGTTTG+AGG | + | chr4.2:27656113-27656132 | MS.gene031483:CDS | 35.0% |
| !!! | CTTTCTGATTGGGTTTTGAA+TGG | + | chr4.2:27655331-27655350 | MS.gene031483:CDS | 35.0% |
| AAATGAAGAGATGGAAGGTG+AGG | + | chr4.2:27656139-27656158 | MS.gene031483:CDS | 40.0% | |
| AACAGCTATGCTTGAGAATC+AGG | + | chr4.2:27655225-27655244 | MS.gene031483:CDS | 40.0% | |
| AAGAATTGTCTGTGACATGG+GGG | + | chr4.2:27655986-27656005 | MS.gene031483:CDS | 40.0% | |
| AATCTCCTTCACTTCTTGCT+TGG | - | chr4.2:27656061-27656080 | None:intergenic | 40.0% | |
| AATGAAGAGATGGAAGGTGA+GGG | + | chr4.2:27656140-27656159 | MS.gene031483:CDS | 40.0% | |
| ATATTCGGAGGCTTATGGTT+CGG | + | chr4.2:27656203-27656222 | MS.gene031483:CDS | 40.0% | |
| ATTGAAAGAGGGATGGATGT+AGG | + | chr4.2:27656090-27656109 | MS.gene031483:CDS | 40.0% | |
| CCAATAAATTCAGCAAGCTC+AGG | - | chr4.2:27655373-27655392 | None:intergenic | 40.0% | |
| CGAGGATGTTGAGATTGATA+TGG | + | chr4.2:27655708-27655727 | MS.gene031483:CDS | 40.0% | |
| CTAAAGCAGAGTTGAATTCG+CGG | - | chr4.2:27655093-27655112 | None:intergenic | 40.0% | |
| CTCTTATTCAAGGGAGAAAG+TGG | - | chr4.2:27655964-27655983 | None:intergenic | 40.0% | |
| GAAGTGAAGGAGATTGAGAT+TGG | + | chr4.2:27656066-27656085 | MS.gene031483:CDS | 40.0% | |
| GAGGAATTGAAGAGAAAAGG+CGG | + | chr4.2:27656333-27656352 | MS.gene031483:CDS | 40.0% | |
| GATCGATGGATCTTTCTGAT+TGG | + | chr4.2:27655320-27655339 | MS.gene031483:CDS | 40.0% | |
| GCTATGAAGAATGTTGATGC+TGG | + | chr4.2:27655439-27655458 | MS.gene031483:CDS | 40.0% | |
| GCTTCAAGAGATTTGAAAGC+TGG | + | chr4.2:27655910-27655929 | MS.gene031483:CDS | 40.0% | |
| GGAACAAATGAAGAGATGGA+AGG | + | chr4.2:27656134-27656153 | MS.gene031483:CDS | 40.0% | |
| GGAACTGTGAAATGCTTGTT+GGG | + | chr4.2:27655254-27655273 | MS.gene031483:CDS | 40.0% | |
| GGAATAGGTTTCAATGGCAT+TGG | - | chr4.2:27654948-27654967 | None:intergenic | 40.0% | |
| GGATGTTAATTCTCTCACTG+AGG | + | chr4.2:27655750-27655769 | MS.gene031483:CDS | 40.0% | |
| GGATTCATTGCAAGTGTAAG+AGG | + | chr4.2:27656007-27656026 | MS.gene031483:CDS | 40.0% | |
| GGTGCAAAGAGTGATGAAAT+GGG | - | chr4.2:27654969-27654988 | None:intergenic | 40.0% | |
| GTTATCCAAGCAAGAAGTGA+AGG | + | chr4.2:27656053-27656072 | MS.gene031483:CDS | 40.0% | |
| TGCATGTACTCTTCTTCTTC+TGG | - | chr4.2:27654878-27654897 | None:intergenic | 40.0% | |
| TGGTGAAAAAGCAAGCAATG+AGG | + | chr4.2:27656424-27656443 | MS.gene031483:CDS | 40.0% | |
| ! | GAGAGGTGTATGAAAAGATG+GGG | + | chr4.2:27656225-27656244 | MS.gene031483:CDS | 40.0% |
| ! | GATGAAAAGCTCTGTTGCTT+TGG | - | chr4.2:27654912-27654931 | None:intergenic | 40.0% |
| ! | GATTGGTATTGAAAGAGGGA+TGG | + | chr4.2:27656083-27656102 | MS.gene031483:CDS | 40.0% |
| ! | GGAGAGGTGTATGAAAAGAT+GGG | + | chr4.2:27656224-27656243 | MS.gene031483:CDS | 40.0% |
| ! | GTAAGAGGTGTAAGTTTGAG+GGG | + | chr4.2:27656022-27656041 | MS.gene031483:CDS | 40.0% |
| ! | GTGTAAGAGGTGTAAGTTTG+AGG | + | chr4.2:27656020-27656039 | MS.gene031483:CDS | 40.0% |
| ! | TAAGAGGTGTAAGTTTGAGG+GGG | + | chr4.2:27656023-27656042 | MS.gene031483:CDS | 40.0% |
| ! | TTTGAATGGGTTTCCTGGTA+AGG | + | chr4.2:27655345-27655364 | MS.gene031483:CDS | 40.0% |
| !! | ATTTTGGTCGCTATATTCGG+AGG | + | chr4.2:27656191-27656210 | MS.gene031483:CDS | 40.0% |
| !! | CCTGAGCTTGCTGAATTTAT+TGG | + | chr4.2:27655370-27655389 | MS.gene031483:CDS | 40.0% |
| !! | TGATGCTGGGTCTTTGATTT+TGG | + | chr4.2:27655453-27655472 | MS.gene031483:CDS | 40.0% |
| !!! | GAAGCTTTTGATGGTGAAGT+GGG | - | chr4.2:27655018-27655037 | None:intergenic | 40.0% |
| !!! | GCGGAGTTTTGATTTTGCTT+CGG | - | chr4.2:27655074-27655093 | None:intergenic | 40.0% |
| !!! | TGAAGCTTTTGATGGTGAAG+TGG | - | chr4.2:27655019-27655038 | None:intergenic | 40.0% |
| !!! | TTTTGATGGTGAAGTGGGTT+GGG | - | chr4.2:27655013-27655032 | None:intergenic | 40.0% |
| AAGATGGGGAAGGAGAATTC+CGG | + | chr4.2:27656239-27656258 | MS.gene031483:CDS | 45.0% | |
| ATGAAGAGATGGAAGGTGAG+GGG | + | chr4.2:27656141-27656160 | MS.gene031483:CDS | 45.0% | |
| ATGCTTGAGAATCAGGCAAG+TGG | + | chr4.2:27655232-27655251 | MS.gene031483:CDS | 45.0% | |
| CTGTTTAGGCCTGAGAATGT+TGG | + | chr4.2:27655670-27655689 | MS.gene031483:CDS | 45.0% | |
| GAAAATCGGAGATTAGTGGG+CGG | + | chr4.2:27655407-27655426 | MS.gene031483:CDS | 45.0% | |
| GAATTGAAGAGAAAAGGCGG+TGG | + | chr4.2:27656336-27656355 | MS.gene031483:CDS | 45.0% | |
| GGCCTAAACAGATCAACAAC+AGG | - | chr4.2:27655661-27655680 | None:intergenic | 45.0% | |
| GGGAACTGTGAAATGCTTGT+TGG | + | chr4.2:27655253-27655272 | MS.gene031483:CDS | 45.0% | |
| GGGAGGTAAAGATTTGAGTG+AGG | + | chr4.2:27655510-27655529 | MS.gene031483:CDS | 45.0% | |
| GGGTGCAAAGAGTGATGAAA+TGG | - | chr4.2:27654970-27654989 | None:intergenic | 45.0% | |
| GGTGCTTAAGATCTTGATGG+AGG | + | chr4.2:27656314-27656333 | MS.gene031483:CDS | 45.0% | |
| GGTGTATGAAAAGATGGGGA+AGG | + | chr4.2:27656229-27656248 | MS.gene031483:CDS | 45.0% | |
| GTGTGGAAGAGAAAGATGGT+GGG | - | chr4.2:27654990-27655009 | None:intergenic | 45.0% | |
| TCGCTATATTCGGAGGCTTA+TGG | + | chr4.2:27656198-27656217 | MS.gene031483:CDS | 45.0% | |
| TGCTTGAGAATCAGGCAAGT+GGG | + | chr4.2:27655233-27655252 | MS.gene031483:CDS | 45.0% | |
| TGGTGAGGTGAATTCAAACG+AGG | + | chr4.2:27655690-27655709 | MS.gene031483:CDS | 45.0% | |
| TTCACCTCACCAACATTCTC+AGG | - | chr4.2:27655682-27655701 | None:intergenic | 45.0% | |
| TTTATCGAGGACTGGATCGA+TGG | + | chr4.2:27655306-27655325 | MS.gene031483:CDS | 45.0% | |
| ! | AAAATCGGAGATTAGTGGGC+GGG | + | chr4.2:27655408-27655427 | MS.gene031483:CDS | 45.0% |
| ! | AAGAGAAGTGTATGGGAAGG+TGG | + | chr4.2:27656404-27656423 | MS.gene031483:CDS | 45.0% |
| ! | AGCAAGAGAAGTGTATGGGA+AGG | + | chr4.2:27656401-27656420 | MS.gene031483:CDS | 45.0% |
| ! | AGCATTACAGATGTAGTGGG+AGG | + | chr4.2:27656282-27656301 | MS.gene031483:CDS | 45.0% |
| ! | ATTGTTATGGTGTTGGGCTC+TGG | + | chr4.2:27655809-27655828 | MS.gene031483:CDS | 45.0% |
| ! | CAGGGTGCTTAAGATCTTGA+TGG | + | chr4.2:27656311-27656330 | MS.gene031483:CDS | 45.0% |
| ! | CGGAGAGGTGTATGAAAAGA+TGG | + | chr4.2:27656223-27656242 | MS.gene031483:CDS | 45.0% |
| !! | TGGTGGTGGAAATTTGGAGA+TGG | + | chr4.2:27656362-27656381 | MS.gene031483:CDS | 45.0% |
| !! | TTTGATGGTGAAGTGGGTTG+GGG | - | chr4.2:27655012-27655031 | None:intergenic | 45.0% |
| !!! | ATGGAGAGGAGTATTTTGGG+AGG | + | chr4.2:27655493-27655512 | MS.gene031483:CDS | 45.0% |
| !!! | CTTTTGATGGTGAAGTGGGT+TGG | - | chr4.2:27655014-27655033 | None:intergenic | 45.0% |
| !!! | GCGATGGAGAGGAGTATTTT+GGG | + | chr4.2:27655490-27655509 | MS.gene031483:CDS | 45.0% |
| !!! | GTTTTGATTTTGCTTCGGCC+CGG | - | chr4.2:27655069-27655088 | None:intergenic | 45.0% |
| !!! | TGCGATGGAGAGGAGTATTT+TGG | + | chr4.2:27655489-27655508 | MS.gene031483:CDS | 45.0% |
| !!! | TGGGTTTTGAATGGGTTTCC+TGG | + | chr4.2:27655340-27655359 | MS.gene031483:CDS | 45.0% |
| AAGGTGAGGGGGAAAGAGAA+GGG | + | chr4.2:27656153-27656172 | MS.gene031483:CDS | 50.0% | |
| ACTCGTGTTGTCCTAATGCG+AGG | + | chr4.2:27655854-27655873 | MS.gene031483:CDS | 50.0% | |
| AGGGATGGATGTAGGTGGTT+TGG | + | chr4.2:27656098-27656117 | MS.gene031483:CDS | 50.0% | |
| GAAAGAGGGATGGATGTAGG+TGG | + | chr4.2:27656093-27656112 | MS.gene031483:CDS | 50.0% | |
| GGTGTGGAAGAGAAAGATGG+TGG | - | chr4.2:27654991-27655010 | None:intergenic | 50.0% | |
| TAGGCCTGAGAATGTTGGTG+AGG | + | chr4.2:27655675-27655694 | MS.gene031483:CDS | 50.0% | |
| TCAACCACTGCATCCAATGC+CGG | - | chr4.2:27656261-27656280 | None:intergenic | 50.0% | |
| TCTGCATTTCCCTCTGCAAC+CGG | + | chr4.2:27655047-27655066 | MS.gene031483:CDS | 50.0% | |
| TGAAGAGATGGAAGGTGAGG+GGG | + | chr4.2:27656142-27656161 | MS.gene031483:CDS | 50.0% | |
| TGGGGTGTGGAAGAGAAAGA+TGG | - | chr4.2:27654994-27655013 | None:intergenic | 50.0% | |
| ! | AAATCGGAGATTAGTGGGCG+GGG | + | chr4.2:27655409-27655428 | MS.gene031483:CDS | 50.0% |
| ! | AATTCCGGCATTGGATGCAG+TGG | + | chr4.2:27656254-27656273 | MS.gene031483:CDS | 50.0% |
| ! | ATGTAGTGGGAGGTGATCAC+AGG | + | chr4.2:27656292-27656311 | MS.gene031483:CDS | 50.0% |
| ! | TGTAGTGGGAGGTGATCACA+GGG | + | chr4.2:27656293-27656312 | MS.gene031483:CDS | 50.0% |
| !! | GCTCTGTTGCTTTGGATCTG+AGG | - | chr4.2:27654904-27654923 | None:intergenic | 50.0% |
| !! | TGGCAGTGGTGGTGGAAATT+TGG | + | chr4.2:27656356-27656375 | MS.gene031483:CDS | 50.0% |
| AAGAGAAAAGGCGGTGGCAG+TGG | + | chr4.2:27656342-27656361 | MS.gene031483:CDS | 55.0% | |
| AATGCGAGGCGGTTGCATGT+TGG | + | chr4.2:27655868-27655887 | MS.gene031483:CDS | 55.0% | |
| ACATGCAACCGCCTCGCATT+AGG | - | chr4.2:27655868-27655887 | None:intergenic | 55.0% | |
| ATGCGAGGCGGTTGCATGTT+GGG | + | chr4.2:27655869-27655888 | MS.gene031483:CDS | 55.0% | |
| CGTGTTGTCCTAATGCGAGG+CGG | + | chr4.2:27655857-27655876 | MS.gene031483:CDS | 55.0% | |
| CTGCATTTCCCTCTGCAACC+GGG | + | chr4.2:27655048-27655067 | MS.gene031483:CDS | 55.0% | |
| GAAGGTGAGGGGGAAAGAGA+AGG | + | chr4.2:27656152-27656171 | MS.gene031483:CDS | 55.0% | |
| GGGAAGGAGAATTCCGGCAT+TGG | + | chr4.2:27656245-27656264 | MS.gene031483:CDS | 55.0% | |
| GGTTACTAAGGCGGTTGCGA+TGG | + | chr4.2:27655474-27655493 | MS.gene031483:CDS | 55.0% | |
| ! | AATCGGAGATTAGTGGGCGG+GGG | + | chr4.2:27655410-27655429 | MS.gene031483:CDS | 55.0% |
| AGAAAAGGCGGTGGCAGTGG+TGG | + | chr4.2:27656345-27656364 | MS.gene031483:CDS | 60.0% | |
| CTAAGGCGGTTGCGATGGAG+AGG | + | chr4.2:27655479-27655498 | MS.gene031483:CDS | 60.0% | |
| GCAAGCTCAGGAGCCTTACC+AGG | - | chr4.2:27655361-27655380 | None:intergenic | 60.0% | |
| TGCGAGGCGGTTGCATGTTG+GGG | + | chr4.2:27655870-27655889 | MS.gene031483:CDS | 60.0% | |
| ! | ATCGGAGATTAGTGGGCGGG+GGG | + | chr4.2:27655411-27655430 | MS.gene031483:CDS | 60.0% |
| ! | CGGAGGCTTATGGTTCGGAG+AGG | + | chr4.2:27656208-27656227 | MS.gene031483:CDS | 60.0% |
| !! | TGGTGAAGTGGGTTGGGGTG+TGG | - | chr4.2:27655007-27655026 | None:intergenic | 60.0% |
| AAAGGCGGTGGCAGTGGTGG+TGG | + | chr4.2:27656348-27656367 | MS.gene031483:CDS | 65.0% | |
| TGCTTCGGCCCGGTTGCAGA+GGG | - | chr4.2:27655059-27655078 | None:intergenic | 65.0% | |
| TTGCTTCGGCCCGGTTGCAG+AGG | - | chr4.2:27655060-27655079 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 27654860 | 27656479 | 27654860 | ID=MS.gene031483 |
| chr4.2 | mRNA | 27654860 | 27656479 | 27654860 | ID=MS.gene031483.t1;Parent=MS.gene031483 |
| chr4.2 | exon | 27654860 | 27656479 | 27654860 | ID=MS.gene031483.t1.exon1;Parent=MS.gene031483.t1 |
| chr4.2 | CDS | 27654860 | 27656479 | 27654860 | ID=cds.MS.gene031483.t1;Parent=MS.gene031483.t1 |
| Gene Sequence |
| Protein sequence |
