Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031494.t1 | AES89938.1 | 71.1 | 273 | 79 | 0 | 1 | 273 | 1 | 273 | 5.00E-91 | 344.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031494.t1 | G7JG89 | 71.1 | 273 | 79 | 0 | 1 | 273 | 1 | 273 | 3.6e-91 | 344.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene031494.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031494.t1 | MTR_4g081980 | 90.110 | 273 | 27 | 0 | 1 | 273 | 1 | 273 | 1.32e-174 | 482 |
| MS.gene031494.t1 | MTR_4g085660 | 47.525 | 303 | 119 | 9 | 1 | 267 | 1 | 299 | 1.18e-66 | 209 |
| MS.gene031494.t1 | MTR_4g085700 | 46.429 | 308 | 116 | 9 | 1 | 267 | 1 | 300 | 1.93e-61 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031494.t1 | AT1G49770 | 31.474 | 251 | 108 | 6 | 73 | 267 | 59 | 301 | 2.33e-25 | 102 |
Find 40 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCCATTTCTACATTT+TGG | 0.093907 | 4.2:+27768209 | None:intergenic |
| CCTCCACTGAAATTGCATTT+TGG | 0.191221 | 4.2:+27765955 | None:intergenic |
| TGACTTTAGATGATGATAAA+TGG | 0.249362 | 4.2:-27768330 | MS.gene031494:CDS |
| AGCTAGCAGCAGGAGAAATT+AGG | 0.262683 | 4.2:-27765923 | MS.gene031494:CDS |
| TTCATCTCCGCAAATGTTAA+AGG | 0.277405 | 4.2:+27767058 | None:intergenic |
| AATGGTTCTTTGTTCTCATT+TGG | 0.286563 | 4.2:+27768250 | None:intergenic |
| GCTAGCAGCAGGAGAAATTA+GGG | 0.304341 | 4.2:-27765922 | MS.gene031494:CDS |
| CTCATTGATTCAATGTCTAA+TGG | 0.319505 | 4.2:+27768232 | None:intergenic |
| AACATCTTGTGCAATGATAA+TGG | 0.343823 | 4.2:-27766942 | MS.gene031494:CDS |
| CACATTGCTTCTTATTCACT+AGG | 0.390758 | 4.2:+27768182 | None:intergenic |
| ATTTGAAACTTACATGGGCT+TGG | 0.392532 | 4.2:+27766904 | None:intergenic |
| AATGAGCCAAAATGTAGAAA+TGG | 0.410797 | 4.2:-27768215 | MS.gene031494:CDS |
| AATGTTACCTTTAACATTTG+CGG | 0.450475 | 4.2:-27767065 | MS.gene031494:CDS |
| GATTCCTCATCTTACTTACA+AGG | 0.453723 | 4.2:-27768005 | MS.gene031494:intron |
| AAAACAAACTCTTGAAAAGC+TGG | 0.453918 | 4.2:-27767216 | MS.gene031494:CDS |
| GATGAGGAATCAAATCTTGA+AGG | 0.457081 | 4.2:+27768017 | None:intergenic |
| ATTTGGTTTATCAGAAATGA+AGG | 0.457704 | 4.2:+27768267 | None:intergenic |
| AAAATTGTTGTCAACAAGCC+TGG | 0.495164 | 4.2:+27767005 | None:intergenic |
| ATGTGTGAAAATCAATCATC+GGG | 0.496092 | 4.2:-27768292 | MS.gene031494:CDS |
| TAAGAAGCAATGTGAGGGAG+GGG | 0.496799 | 4.2:-27768173 | MS.gene031494:CDS |
| ATTATCATTGCACAAGATGT+TGG | 0.497659 | 4.2:+27766944 | None:intergenic |
| ATGCACGTGCTGAGAGAGAA+AGG | 0.501549 | 4.2:-27768069 | MS.gene031494:CDS |
| GAAAGTTACAAGCTAGCAGC+AGG | 0.519236 | 4.2:-27765933 | MS.gene031494:CDS |
| AATAAGAAGCAATGTGAGGG+AGG | 0.525488 | 4.2:-27768175 | MS.gene031494:CDS |
| ACATTGCTTCTTATTCACTA+GGG | 0.529713 | 4.2:+27768183 | None:intergenic |
| TTTGGTTTATCAGAAATGAA+GGG | 0.532763 | 4.2:+27768268 | None:intergenic |
| CATGTGTGAAAATCAATCAT+CGG | 0.538236 | 4.2:-27768293 | MS.gene031494:CDS |
| CTTCACTGCTTCCTCCACAA+TGG | 0.569321 | 4.2:+27767253 | None:intergenic |
| TTTATCATCATCTAAAGTCA+TGG | 0.573233 | 4.2:+27768333 | None:intergenic |
| ATAAGAAGCAATGTGAGGGA+GGG | 0.586200 | 4.2:-27768174 | MS.gene031494:CDS |
| TTGGTTTATCAGAAATGAAG+GGG | 0.597449 | 4.2:+27768269 | None:intergenic |
| TTTACCTTGTAAGTAAGATG+AGG | 0.598129 | 4.2:+27768001 | None:intergenic |
| GTGAATAAGAAGCAATGTGA+GGG | 0.611245 | 4.2:-27768178 | MS.gene031494:CDS |
| CCAAAATGCAATTTCAGTGG+AGG | 0.613831 | 4.2:-27765955 | MS.gene031494:CDS |
| AAGCCAAAATGCAATTTCAG+TGG | 0.614102 | 4.2:-27765958 | MS.gene031494:CDS |
| ATATACACAACTAAGAAGCC+AGG | 0.619168 | 4.2:-27767023 | MS.gene031494:CDS |
| GGTAGATTCTGTAACCATTG+TGG | 0.628284 | 4.2:-27767267 | MS.gene031494:CDS |
| CTAGCAGCAGGAGAAATTAG+GGG | 0.636230 | 4.2:-27765921 | MS.gene031494:CDS |
| AGATTCTGTAACCATTGTGG+AGG | 0.646571 | 4.2:-27767264 | MS.gene031494:CDS |
| AGTGAATAAGAAGCAATGTG+AGG | 0.680971 | 4.2:-27768179 | MS.gene031494:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAAAAAAAAAAAAGT+TGG | + | chr4.2:27768042-27768061 | None:intergenic | 10.0% |
| !! | TTAAATGTTAAAAATGATAA+GGG | - | chr4.2:27766112-27766131 | MS.gene031494:intron | 10.0% |
| !! | TTTAAATGTTAAAAATGATA+AGG | - | chr4.2:27766111-27766130 | MS.gene031494:intron | 10.0% |
| !!! | GTTTTTCATTTTTTTTTTTT+TGG | + | chr4.2:27768144-27768163 | None:intergenic | 10.0% |
| !! | AAAATTGAAAGGATAAAATT+AGG | + | chr4.2:27766391-27766410 | None:intergenic | 15.0% |
| !! | AATACAACAAAAAAAAGTTT+GGG | - | chr4.2:27766787-27766806 | MS.gene031494:intron | 15.0% |
| !! | CTTTAACTAAATTCAAATAT+GGG | - | chr4.2:27766671-27766690 | MS.gene031494:intron | 15.0% |
| !! | TAAATGTTAAAAATGATAAG+GGG | - | chr4.2:27766113-27766132 | MS.gene031494:intron | 15.0% |
| !! | TAATACAACAAAAAAAAGTT+TGG | - | chr4.2:27766786-27766805 | MS.gene031494:intron | 15.0% |
| !!! | ACAAAATTTTCATTGAAAAA+TGG | + | chr4.2:27766312-27766331 | None:intergenic | 15.0% |
| !!! | ATTACATTCATTTTTAAGAT+TGG | - | chr4.2:27766267-27766286 | MS.gene031494:intron | 15.0% |
| !!! | GTCTAAATTTTAAATTACTA+AGG | - | chr4.2:27766737-27766756 | MS.gene031494:intron | 15.0% |
| !!! | TAGTAATTTAAAATTTAGAC+TGG | + | chr4.2:27766737-27766756 | None:intergenic | 15.0% |
| !! | GCTTTAACTAAATTCAAATA+TGG | - | chr4.2:27766670-27766689 | MS.gene031494:intron | 20.0% |
| !! | TCAATATATATGCTATGTTA+CGG | + | chr4.2:27767520-27767539 | None:intergenic | 20.0% |
| !!! | AATTGAATTTGAAACTTACA+TGG | + | chr4.2:27767347-27767366 | None:intergenic | 20.0% |
| !!! | ATAAACTTTAGGTTTGTTTA+CGG | + | chr4.2:27767970-27767989 | None:intergenic | 20.0% |
| !!! | ATTGAATTTGAAACTTACAT+GGG | + | chr4.2:27767346-27767365 | None:intergenic | 20.0% |
| !!! | ATTTTTTATTCTTTGTACCA+TGG | - | chr4.2:27766494-27766513 | MS.gene031494:intron | 20.0% |
| !!! | TAATTTAAAATTTAGACTGG+AGG | + | chr4.2:27766734-27766753 | None:intergenic | 20.0% |
| !!! | TGCTTTGTATTTAATTTCTT+TGG | - | chr4.2:27766950-27766969 | MS.gene031494:CDS | 20.0% |
| !!! | TTTTTGTTGTATTAATTCGT+TGG | + | chr4.2:27766780-27766799 | None:intergenic | 20.0% |
| ! | AATGTTACCTTTAACATTTG+CGG | - | chr4.2:27767177-27767196 | MS.gene031494:CDS | 25.0% |
| ! | ATTAAATCAATGTTACACCT+AGG | + | chr4.2:27766922-27766941 | None:intergenic | 25.0% |
| ! | TGACTTTAGATGATGATAAA+TGG | - | chr4.2:27765912-27765931 | MS.gene031494:CDS | 25.0% |
| ! | TTATTTCATTATCCACAATG+TGG | - | chr4.2:27768204-27768223 | MS.gene031494:CDS | 25.0% |
| !! | ATCAAAATTGAATCGATTCA+TGG | + | chr4.2:27766639-27766658 | None:intergenic | 25.0% |
| !! | ATTTGGTTTATCAGAAATGA+AGG | + | chr4.2:27765978-27765997 | None:intergenic | 25.0% |
| !! | CATGGATCTTTATTTAAGAA+AGG | - | chr4.2:27767800-27767819 | MS.gene031494:intron | 25.0% |
| !! | CATTTCTTTTGACAAAAAAG+AGG | - | chr4.2:27767611-27767630 | MS.gene031494:intron | 25.0% |
| !! | TAAACTTTAGGTTTGTTTAC+GGG | + | chr4.2:27767969-27767988 | None:intergenic | 25.0% |
| !! | TTAGCAAAATACTTTTCTTC+TGG | + | chr4.2:27768007-27768026 | None:intergenic | 25.0% |
| !! | TTGTATTTAATTTCTTTGGC+AGG | - | chr4.2:27766954-27766973 | MS.gene031494:CDS | 25.0% |
| !! | TTTATCATCATCTAAAGTCA+TGG | + | chr4.2:27765912-27765931 | None:intergenic | 25.0% |
| !! | TTTGGTTTATCAGAAATGAA+GGG | + | chr4.2:27765977-27765996 | None:intergenic | 25.0% |
| !!! | ATGAATAATCGGTTTGAAAT+AGG | + | chr4.2:27766851-27766870 | None:intergenic | 25.0% |
| !!! | ATGAATCGATTCAATTTTGA+TGG | - | chr4.2:27766638-27766657 | MS.gene031494:intron | 25.0% |
| !!! | TGTCATGAAAAGTTTTATTG+CGG | - | chr4.2:27767827-27767846 | MS.gene031494:intron | 25.0% |
| AAAACAAACTCTTGAAAAGC+TGG | - | chr4.2:27767026-27767045 | MS.gene031494:CDS | 30.0% | |
| AAAGTTTATCCTTTGACTAC+TGG | - | chr4.2:27767981-27768000 | MS.gene031494:intron | 30.0% | |
| AACATCTTGTGCAATGATAA+TGG | - | chr4.2:27767300-27767319 | MS.gene031494:intron | 30.0% | |
| AATGAGCCAAAATGTAGAAA+TGG | - | chr4.2:27766027-27766046 | MS.gene031494:intron | 30.0% | |
| AATGGTTCTTTGTTCTCATT+TGG | + | chr4.2:27765995-27766014 | None:intergenic | 30.0% | |
| ACATTGCTTCTTATTCACTA+GGG | + | chr4.2:27766062-27766081 | None:intergenic | 30.0% | |
| ACTAAATTCAAATATGGGCT+TGG | - | chr4.2:27766676-27766695 | MS.gene031494:intron | 30.0% | |
| ACTTTGATGTCAATGATCAT+CGG | - | chr4.2:27767765-27767784 | MS.gene031494:intron | 30.0% | |
| AGTTATTTACATCCACATTG+TGG | + | chr4.2:27768219-27768238 | None:intergenic | 30.0% | |
| ATGTATATATAGCAACACCT+AGG | - | chr4.2:27766902-27766921 | MS.gene031494:intron | 30.0% | |
| ATGTGTGAAAATCAATCATC+GGG | - | chr4.2:27765950-27765969 | MS.gene031494:CDS | 30.0% | |
| ATTATCATTGCACAAGATGT+TGG | + | chr4.2:27767301-27767320 | None:intergenic | 30.0% | |
| CATGTGTGAAAATCAATCAT+CGG | - | chr4.2:27765949-27765968 | MS.gene031494:CDS | 30.0% | |
| CGGATTTAAACTGTGAATAA+TGG | + | chr4.2:27767500-27767519 | None:intergenic | 30.0% | |
| CTAGTACTTGTAGAGTAATT+TGG | - | chr4.2:27767403-27767422 | MS.gene031494:intron | 30.0% | |
| GAGAAAGGAGAAAAAAAATG+AGG | - | chr4.2:27766188-27766207 | MS.gene031494:intron | 30.0% | |
| GTAGTCAAAGGATAAACTTT+AGG | + | chr4.2:27767981-27768000 | None:intergenic | 30.0% | |
| GTGCTCAAAATTAGTGTTTA+GGG | - | chr4.2:27767676-27767695 | MS.gene031494:intron | 30.0% | |
| TAAGTCTTAATGAGTGACTT+AGG | - | chr4.2:27767701-27767720 | MS.gene031494:intron | 30.0% | |
| TCTTACATACTCTCTTCTAT+TGG | + | chr4.2:27767450-27767469 | None:intergenic | 30.0% | |
| TGTGCTCAAAATTAGTGTTT+AGG | - | chr4.2:27767675-27767694 | MS.gene031494:intron | 30.0% | |
| TTGGTTTATCAGAAATGAAG+GGG | + | chr4.2:27765976-27765995 | None:intergenic | 30.0% | |
| TTTACCTTGTAAGTAAGATG+AGG | + | chr4.2:27766244-27766263 | None:intergenic | 30.0% | |
| ! | AAAATTGAATCGATTCATGG+AGG | + | chr4.2:27766636-27766655 | None:intergenic | 30.0% |
| ! | AATGACGTGCAAATTTTTCT+TGG | + | chr4.2:27766577-27766596 | None:intergenic | 30.0% |
| ! | CTTCTTCCATTTCTACATTT+TGG | + | chr4.2:27766036-27766055 | None:intergenic | 30.0% |
| ! | GTGACTTAGGTTTTCTTTTT+TGG | - | chr4.2:27767714-27767733 | MS.gene031494:intron | 30.0% |
| ! | TTTTTCTTGGATGATATCAG+CGG | + | chr4.2:27766564-27766583 | None:intergenic | 30.0% |
| !! | AAGATAGACGCTTTTTGTTT+AGG | - | chr4.2:27767878-27767897 | MS.gene031494:intron | 30.0% |
| !! | AGAACTTTTGTGATTTGTGT+CGG | - | chr4.2:27767644-27767663 | MS.gene031494:intron | 30.0% |
| !! | CTCATTGATTCAATGTCTAA+TGG | + | chr4.2:27766013-27766032 | None:intergenic | 30.0% |
| !! | TTGATTTGTGTTAATGTTGC+AGG | - | chr4.2:27768242-27768261 | MS.gene031494:CDS | 30.0% |
| AAAATTGTTGTCAACAAGCC+TGG | + | chr4.2:27767240-27767259 | None:intergenic | 35.0% | |
| AAGCCAAAATGCAATTTCAG+TGG | - | chr4.2:27768284-27768303 | MS.gene031494:CDS | 35.0% | |
| AGTGAATAAGAAGCAATGTG+AGG | - | chr4.2:27766063-27766082 | MS.gene031494:intron | 35.0% | |
| ATATACACAACTAAGAAGCC+AGG | - | chr4.2:27767219-27767238 | MS.gene031494:CDS | 35.0% | |
| CAAAAAAAAGTTTGGGCAAG+AGG | - | chr4.2:27766794-27766813 | MS.gene031494:intron | 35.0% | |
| CACATTGCTTCTTATTCACT+AGG | + | chr4.2:27766063-27766082 | None:intergenic | 35.0% | |
| CATCGGATTTATTTCAGTCA+TGG | - | chr4.2:27767782-27767801 | MS.gene031494:intron | 35.0% | |
| CATTATTGTTCTCCGAAGAA+AGG | + | chr4.2:27767936-27767955 | None:intergenic | 35.0% | |
| CTCAAGCGAAATCGTAAAAA+TGG | + | chr4.2:27767584-27767603 | None:intergenic | 35.0% | |
| GATGAGGAATCAAATCTTGA+AGG | + | chr4.2:27766228-27766247 | None:intergenic | 35.0% | |
| GATTCCTCATCTTACTTACA+AGG | - | chr4.2:27766237-27766256 | MS.gene031494:intron | 35.0% | |
| GTACTTGTAGAGTAATTTGG+AGG | - | chr4.2:27767406-27767425 | MS.gene031494:intron | 35.0% | |
| GTGAATAAGAAGCAATGTGA+GGG | - | chr4.2:27766064-27766083 | MS.gene031494:intron | 35.0% | |
| TAAAGATGCATGTGTACTCA+CGG | + | chr4.2:27768187-27768206 | None:intergenic | 35.0% | |
| TCTTCGGAGAACAATAATGT+GGG | - | chr4.2:27767937-27767956 | MS.gene031494:intron | 35.0% | |
| TTCATCTCCGCAAATGTTAA+AGG | + | chr4.2:27767187-27767206 | None:intergenic | 35.0% | |
| TTCTTCCTTAGTCCTTTCTT+CGG | - | chr4.2:27767921-27767940 | MS.gene031494:intron | 35.0% | |
| TTCTTCGGAGAACAATAATG+TGG | - | chr4.2:27767936-27767955 | MS.gene031494:intron | 35.0% | |
| TTTATTCTTTGTACCATGGC+AGG | - | chr4.2:27766498-27766517 | MS.gene031494:intron | 35.0% | |
| ! | ATTTGAAACTTACATGGGCT+TGG | + | chr4.2:27767341-27767360 | None:intergenic | 35.0% |
| ! | GACAACAATTTTTCATGCGA+TGG | - | chr4.2:27767248-27767267 | MS.gene031494:CDS | 35.0% |
| !! | CTTGGTGCACATTTTATGAA+AGG | + | chr4.2:27766349-27766368 | None:intergenic | 35.0% |
| !! | TAATCGGTTTGAAATAGGAG+CGG | + | chr4.2:27766846-27766865 | None:intergenic | 35.0% |
| !!! | TTTTAGTTTGAACTCGCAGA+TGG | - | chr4.2:27767110-27767129 | MS.gene031494:CDS | 35.0% |
| !!! | TTTTTTGGTCTCGATGTTGA+CGG | - | chr4.2:27767729-27767748 | MS.gene031494:intron | 35.0% |
| AAAGTAAACTTGTCCTGCCA+TGG | + | chr4.2:27766514-27766533 | None:intergenic | 40.0% | |
| AAGAATGTGTGTGTTCGAGA+AGG | - | chr4.2:27767466-27767485 | MS.gene031494:intron | 40.0% | |
| AATAAGAAGCAATGTGAGGG+AGG | - | chr4.2:27766067-27766086 | MS.gene031494:intron | 40.0% | |
| AGATTCTGTAACCATTGTGG+AGG | - | chr4.2:27766978-27766997 | MS.gene031494:CDS | 40.0% | |
| ATAAGAAGCAATGTGAGGGA+GGG | - | chr4.2:27766068-27766087 | MS.gene031494:intron | 40.0% | |
| CCAAAATGCAATTTCAGTGG+AGG | - | chr4.2:27768287-27768306 | MS.gene031494:CDS | 40.0% | |
| GGTAGATTCTGTAACCATTG+TGG | - | chr4.2:27766975-27766994 | MS.gene031494:CDS | 40.0% | |
| ! | CACGAGCTTTTCAACAAATG+TGG | - | chr4.2:27767145-27767164 | MS.gene031494:CDS | 40.0% |
| ! | CCTCCACTGAAATTGCATTT+TGG | + | chr4.2:27768290-27768309 | None:intergenic | 40.0% |
| ! | TGGGCTTGGATTTTTCTCAA+TGG | - | chr4.2:27766690-27766709 | MS.gene031494:intron | 40.0% |
| !! | AATCGGTTTGAAATAGGAGC+GGG | + | chr4.2:27766845-27766864 | None:intergenic | 40.0% |
| AGCTAGCAGCAGGAGAAATT+AGG | - | chr4.2:27768319-27768338 | MS.gene031494:CDS | 45.0% | |
| ATGACACATCCACGACACTA+CGG | + | chr4.2:27767855-27767874 | None:intergenic | 45.0% | |
| CAAAACACTCTTCGAGGACT+TGG | + | chr4.2:27766367-27766386 | None:intergenic | 45.0% | |
| CTAGCAGCAGGAGAAATTAG+GGG | - | chr4.2:27768321-27768340 | MS.gene031494:CDS | 45.0% | |
| GAAAGTTACAAGCTAGCAGC+AGG | - | chr4.2:27768309-27768328 | MS.gene031494:CDS | 45.0% | |
| GCTAGCAGCAGGAGAAATTA+GGG | - | chr4.2:27768320-27768339 | MS.gene031494:CDS | 45.0% | |
| GTTCTCCGAAGAAAGGACTA+AGG | + | chr4.2:27767929-27767948 | None:intergenic | 45.0% | |
| TAAGAAGCAATGTGAGGGAG+GGG | - | chr4.2:27766069-27766088 | MS.gene031494:intron | 45.0% | |
| TGGGCAAGAGGTTGAGATTA+GGG | - | chr4.2:27766806-27766825 | MS.gene031494:intron | 45.0% | |
| TTAGGCCAAAACACTCTTCG+AGG | + | chr4.2:27766373-27766392 | None:intergenic | 45.0% | |
| TTCTTCTGGCCAGTAGTCAA+AGG | + | chr4.2:27767993-27768012 | None:intergenic | 45.0% | |
| TTGGGCAAGAGGTTGAGATT+AGG | - | chr4.2:27766805-27766824 | MS.gene031494:intron | 45.0% | |
| !!! | CAAGTCCTCGAAGAGTGTTT+TGG | - | chr4.2:27766365-27766384 | MS.gene031494:intron | 45.0% |
| !! | AAATAAAATAAAAAATTGAA+AGG | + | chr4.2:27766402-27766421 | None:intergenic | 5.0% |
| !!! | ATAAATTTTATATGAATAAT+CGG | + | chr4.2:27766862-27766881 | None:intergenic | 5.0% |
| ATGCACGTGCTGAGAGAGAA+AGG | - | chr4.2:27766173-27766192 | MS.gene031494:intron | 50.0% | |
| CTTCACTGCTTCCTCCACAA+TGG | + | chr4.2:27766992-27767011 | None:intergenic | 50.0% | |
| TGACACATCCACGACACTAC+GGG | + | chr4.2:27767854-27767873 | None:intergenic | 50.0% | |
| TGCACGTCATTCGACATGCA+TGG | - | chr4.2:27766586-27766605 | MS.gene031494:intron | 50.0% | |
| GACACATCCACGACACTACG+GGG | + | chr4.2:27767853-27767872 | None:intergenic | 55.0% | |
| ATTGCGGCCCCGTAGTGTCG+TGG | - | chr4.2:27767843-27767862 | MS.gene031494:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 27765905 | 27768359 | 27765905 | ID=MS.gene031494 |
| chr4.2 | mRNA | 27765905 | 27768359 | 27765905 | ID=MS.gene031494.t1;Parent=MS.gene031494 |
| chr4.2 | exon | 27768006 | 27768359 | 27768006 | ID=MS.gene031494.t1.exon1;Parent=MS.gene031494.t1 |
| chr4.2 | CDS | 27768006 | 27768359 | 27768006 | ID=cds.MS.gene031494.t1;Parent=MS.gene031494.t1 |
| chr4.2 | exon | 27766917 | 27767288 | 27766917 | ID=MS.gene031494.t1.exon2;Parent=MS.gene031494.t1 |
| chr4.2 | CDS | 27766917 | 27767288 | 27766917 | ID=cds.MS.gene031494.t1;Parent=MS.gene031494.t1 |
| chr4.2 | exon | 27765905 | 27766000 | 27765905 | ID=MS.gene031494.t1.exon3;Parent=MS.gene031494.t1 |
| chr4.2 | CDS | 27765905 | 27766000 | 27765905 | ID=cds.MS.gene031494.t1;Parent=MS.gene031494.t1 |
| Gene Sequence |
| Protein sequence |
