Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031498.t1 | XP_003607748.1 | 84.2 | 467 | 72 | 1 | 1 | 467 | 1 | 465 | 1.20E-214 | 755.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031498.t1 | Q8LFV3 | 42.3 | 371 | 173 | 12 | 113 | 466 | 101 | 447 | 2.2e-55 | 218.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031498.t1 | G7JG96 | 84.2 | 467 | 72 | 1 | 1 | 467 | 1 | 465 | 8.9e-215 | 755.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene031498.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031498.t1 | MTR_4g082060 | 95.075 | 467 | 21 | 1 | 1 | 467 | 1 | 465 | 0.0 | 893 |
MS.gene031498.t1 | MTR_6g012450 | 44.466 | 506 | 227 | 18 | 1 | 465 | 1 | 493 | 7.43e-116 | 349 |
MS.gene031498.t1 | MTR_7g010950 | 44.800 | 500 | 225 | 16 | 1 | 465 | 1 | 484 | 1.32e-107 | 328 |
MS.gene031498.t1 | MTR_3g435480 | 44.040 | 495 | 215 | 20 | 1 | 465 | 1 | 463 | 4.34e-105 | 321 |
MS.gene031498.t1 | MTR_5g041530 | 41.443 | 485 | 150 | 17 | 6 | 465 | 4 | 379 | 7.59e-87 | 271 |
MS.gene031498.t1 | MTR_5g041380 | 38.525 | 488 | 150 | 17 | 6 | 465 | 4 | 369 | 1.12e-73 | 236 |
MS.gene031498.t1 | MTR_5g041400 | 36.810 | 489 | 151 | 18 | 6 | 466 | 4 | 362 | 3.68e-71 | 230 |
MS.gene031498.t1 | MTR_8g044220 | 33.740 | 492 | 230 | 19 | 5 | 465 | 11 | 437 | 2.65e-62 | 209 |
MS.gene031498.t1 | MTR_7g086780 | 33.197 | 488 | 235 | 17 | 1 | 465 | 1 | 420 | 6.35e-60 | 202 |
MS.gene031498.t1 | MTR_5g041420 | 49.528 | 212 | 70 | 8 | 4 | 185 | 2 | 206 | 3.07e-50 | 174 |
MS.gene031498.t1 | MTR_6g027460 | 34.056 | 323 | 142 | 11 | 4 | 306 | 9 | 280 | 1.97e-42 | 154 |
MS.gene031498.t1 | MTR_6g027450 | 46.857 | 175 | 76 | 4 | 85 | 243 | 51 | 224 | 7.07e-42 | 152 |
MS.gene031498.t1 | MTR_2g016030 | 86.667 | 60 | 8 | 0 | 116 | 175 | 41 | 100 | 1.16e-33 | 124 |
MS.gene031498.t1 | MTR_3g091820 | 61.765 | 68 | 26 | 0 | 108 | 175 | 29 | 96 | 1.26e-25 | 107 |
MS.gene031498.t1 | MTR_8g027295 | 65.625 | 64 | 22 | 0 | 117 | 180 | 19 | 82 | 3.03e-25 | 105 |
MS.gene031498.t1 | MTR_8g068210 | 52.381 | 84 | 40 | 0 | 97 | 180 | 7 | 90 | 5.42e-25 | 105 |
MS.gene031498.t1 | MTR_8g079060 | 63.934 | 61 | 22 | 0 | 122 | 182 | 29 | 89 | 1.25e-24 | 102 |
MS.gene031498.t1 | MTR_2g093220 | 64.615 | 65 | 23 | 0 | 111 | 175 | 29 | 93 | 2.84e-24 | 102 |
MS.gene031498.t1 | MTR_8g479350 | 66.102 | 59 | 20 | 0 | 122 | 180 | 68 | 126 | 3.12e-24 | 103 |
MS.gene031498.t1 | MTR_4g022370 | 67.241 | 58 | 19 | 0 | 118 | 175 | 78 | 135 | 4.04e-24 | 103 |
MS.gene031498.t1 | MTR_1g077600 | 57.971 | 69 | 29 | 0 | 106 | 174 | 27 | 95 | 8.90e-24 | 100 |
MS.gene031498.t1 | MTR_1g077600 | 57.971 | 69 | 29 | 0 | 106 | 174 | 27 | 95 | 9.46e-24 | 101 |
MS.gene031498.t1 | MTR_4g088580 | 74.074 | 54 | 14 | 0 | 124 | 177 | 57 | 110 | 1.53e-23 | 102 |
MS.gene031498.t1 | MTR_2g059540 | 73.469 | 49 | 13 | 0 | 122 | 170 | 31 | 79 | 3.65e-23 | 97.4 |
MS.gene031498.t1 | MTR_4g063780 | 58.571 | 70 | 26 | 1 | 108 | 174 | 58 | 127 | 5.48e-23 | 99.8 |
MS.gene031498.t1 | MTR_1g056810 | 53.333 | 90 | 40 | 2 | 117 | 204 | 6 | 95 | 5.75e-23 | 99.0 |
MS.gene031498.t1 | MTR_2g096740 | 68.519 | 54 | 17 | 0 | 122 | 175 | 62 | 115 | 6.16e-23 | 99.0 |
MS.gene031498.t1 | MTR_2g096740 | 68.519 | 54 | 17 | 0 | 122 | 175 | 77 | 130 | 6.82e-23 | 99.0 |
MS.gene031498.t1 | MTR_4g109980 | 67.925 | 53 | 17 | 0 | 120 | 172 | 38 | 90 | 7.11e-23 | 99.4 |
MS.gene031498.t1 | MTR_8g015840 | 62.903 | 62 | 23 | 0 | 122 | 183 | 20 | 81 | 8.11e-23 | 96.7 |
MS.gene031498.t1 | MTR_4g461080 | 56.000 | 75 | 29 | 1 | 104 | 174 | 7 | 81 | 2.74e-22 | 96.7 |
MS.gene031498.t1 | MTR_7g059400 | 71.154 | 52 | 15 | 0 | 124 | 175 | 78 | 129 | 3.30e-22 | 97.8 |
MS.gene031498.t1 | MTR_4g089095 | 70.370 | 54 | 15 | 1 | 124 | 177 | 52 | 104 | 7.66e-22 | 95.9 |
MS.gene031498.t1 | MTR_7g024670 | 72.549 | 51 | 14 | 0 | 124 | 174 | 79 | 129 | 8.23e-22 | 97.1 |
MS.gene031498.t1 | MTR_2g013370 | 67.857 | 56 | 17 | 1 | 122 | 177 | 46 | 100 | 9.32e-22 | 95.1 |
MS.gene031498.t1 | MTR_4g089095 | 70.370 | 54 | 15 | 1 | 124 | 177 | 18 | 70 | 9.89e-22 | 94.7 |
MS.gene031498.t1 | MTR_3g090430 | 59.155 | 71 | 27 | 2 | 107 | 175 | 34 | 104 | 1.07e-21 | 96.3 |
MS.gene031498.t1 | MTR_2g014170 | 71.429 | 49 | 14 | 0 | 122 | 170 | 45 | 93 | 1.84e-21 | 95.1 |
MS.gene031498.t1 | MTR_5g031440 | 63.636 | 55 | 20 | 0 | 118 | 172 | 39 | 93 | 1.87e-21 | 95.5 |
MS.gene031498.t1 | MTR_3g077750 | 61.290 | 62 | 23 | 1 | 112 | 172 | 50 | 111 | 3.16e-21 | 94.7 |
MS.gene031498.t1 | MTR_2g014060 | 70.000 | 50 | 15 | 0 | 124 | 173 | 27 | 76 | 4.05e-21 | 94.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031498.t1 | AT3G47500 | 40.612 | 490 | 223 | 17 | 1 | 466 | 2 | 447 | 3.72e-85 | 269 |
MS.gene031498.t1 | AT5G39660 | 38.264 | 507 | 216 | 19 | 4 | 465 | 1 | 455 | 1.76e-80 | 257 |
MS.gene031498.t1 | AT5G39660 | 38.264 | 507 | 216 | 19 | 4 | 465 | 1 | 455 | 1.76e-80 | 257 |
MS.gene031498.t1 | AT5G39660 | 38.264 | 507 | 216 | 19 | 4 | 465 | 1 | 455 | 1.76e-80 | 257 |
MS.gene031498.t1 | AT5G62430 | 41.979 | 374 | 104 | 15 | 97 | 466 | 33 | 297 | 1.69e-64 | 210 |
MS.gene031498.t1 | AT1G69570 | 33.126 | 483 | 217 | 19 | 1 | 465 | 1 | 395 | 7.51e-48 | 169 |
MS.gene031498.t1 | AT1G26790 | 33.120 | 468 | 206 | 18 | 1 | 465 | 7 | 370 | 4.51e-47 | 167 |
MS.gene031498.t1 | AT1G29160 | 88.333 | 60 | 7 | 0 | 116 | 175 | 56 | 115 | 2.54e-35 | 129 |
MS.gene031498.t1 | AT2G34140 | 52.727 | 110 | 52 | 0 | 66 | 175 | 2 | 111 | 2.71e-34 | 127 |
MS.gene031498.t1 | AT5G60200 | 37.931 | 174 | 99 | 4 | 118 | 288 | 51 | 218 | 2.36e-27 | 110 |
MS.gene031498.t1 | AT4G24060 | 61.538 | 65 | 25 | 0 | 111 | 175 | 42 | 106 | 2.41e-24 | 103 |
MS.gene031498.t1 | AT1G51700 | 53.086 | 81 | 31 | 1 | 100 | 180 | 18 | 91 | 2.56e-24 | 100 |
MS.gene031498.t1 | AT3G55370 | 43.243 | 111 | 49 | 2 | 118 | 217 | 72 | 179 | 3.57e-24 | 103 |
MS.gene031498.t1 | AT3G55370 | 43.243 | 111 | 49 | 2 | 118 | 217 | 72 | 179 | 4.27e-24 | 103 |
MS.gene031498.t1 | AT5G60850 | 72.222 | 54 | 15 | 0 | 122 | 175 | 51 | 104 | 4.77e-24 | 102 |
MS.gene031498.t1 | AT3G55370 | 67.241 | 58 | 19 | 0 | 118 | 175 | 117 | 174 | 5.41e-24 | 103 |
MS.gene031498.t1 | AT2G28810 | 57.143 | 70 | 30 | 0 | 104 | 173 | 59 | 128 | 5.74e-24 | 102 |
MS.gene031498.t1 | AT3G50410 | 68.421 | 57 | 18 | 0 | 122 | 178 | 30 | 86 | 6.77e-24 | 100 |
MS.gene031498.t1 | AT2G28810 | 46.078 | 102 | 49 | 2 | 78 | 173 | 44 | 145 | 7.54e-24 | 102 |
MS.gene031498.t1 | AT1G21340 | 48.936 | 94 | 37 | 3 | 124 | 216 | 40 | 123 | 9.13e-24 | 100 |
MS.gene031498.t1 | AT2G37590 | 57.576 | 66 | 28 | 0 | 110 | 175 | 77 | 142 | 1.00e-23 | 102 |
MS.gene031498.t1 | AT1G64620 | 55.128 | 78 | 34 | 1 | 93 | 170 | 21 | 97 | 1.39e-23 | 102 |
MS.gene031498.t1 | AT3G61850 | 60.938 | 64 | 25 | 0 | 112 | 175 | 52 | 115 | 1.74e-23 | 100 |
MS.gene031498.t1 | AT3G61850 | 60.938 | 64 | 25 | 0 | 112 | 175 | 52 | 115 | 1.74e-23 | 100 |
MS.gene031498.t1 | AT3G61850 | 58.824 | 68 | 28 | 0 | 112 | 179 | 64 | 131 | 2.02e-23 | 100 |
MS.gene031498.t1 | AT3G61850 | 60.938 | 64 | 25 | 0 | 112 | 175 | 52 | 115 | 2.91e-23 | 100 |
MS.gene031498.t1 | AT3G61850 | 58.824 | 68 | 28 | 0 | 112 | 179 | 64 | 131 | 3.23e-23 | 100 |
MS.gene031498.t1 | AT3G21270 | 71.698 | 53 | 15 | 0 | 122 | 174 | 29 | 81 | 3.84e-23 | 97.4 |
MS.gene031498.t1 | AT2G28510 | 67.797 | 59 | 19 | 0 | 124 | 182 | 50 | 108 | 6.45e-23 | 99.0 |
MS.gene031498.t1 | AT1G07640 | 69.811 | 53 | 16 | 0 | 122 | 174 | 21 | 73 | 7.74e-23 | 98.2 |
MS.gene031498.t1 | AT3G45610 | 57.143 | 63 | 27 | 0 | 118 | 180 | 36 | 98 | 8.52e-23 | 97.4 |
MS.gene031498.t1 | AT1G28310 | 70.370 | 54 | 16 | 0 | 122 | 175 | 27 | 80 | 9.06e-23 | 99.0 |
MS.gene031498.t1 | AT1G07640 | 69.811 | 53 | 16 | 0 | 122 | 174 | 77 | 129 | 1.17e-22 | 99.0 |
MS.gene031498.t1 | AT1G28310 | 47.475 | 99 | 43 | 2 | 79 | 175 | 13 | 104 | 1.44e-22 | 99.0 |
MS.gene031498.t1 | AT1G07640 | 69.811 | 53 | 16 | 0 | 122 | 174 | 85 | 137 | 1.53e-22 | 99.0 |
MS.gene031498.t1 | AT5G02460 | 57.746 | 71 | 27 | 1 | 108 | 175 | 78 | 148 | 1.88e-22 | 99.4 |
MS.gene031498.t1 | AT5G66940 | 60.000 | 60 | 24 | 0 | 122 | 181 | 32 | 91 | 2.57e-22 | 95.5 |
MS.gene031498.t1 | AT5G65590 | 54.930 | 71 | 32 | 0 | 105 | 175 | 24 | 94 | 3.30e-22 | 97.4 |
MS.gene031498.t1 | AT4G00940 | 56.757 | 74 | 27 | 1 | 109 | 177 | 50 | 123 | 4.42e-22 | 96.7 |
MS.gene031498.t1 | AT4G00940 | 56.757 | 74 | 27 | 1 | 109 | 177 | 50 | 123 | 4.42e-22 | 96.7 |
MS.gene031498.t1 | AT4G00940 | 56.757 | 74 | 27 | 1 | 109 | 177 | 50 | 123 | 4.42e-22 | 96.7 |
MS.gene031498.t1 | AT1G47655 | 71.429 | 49 | 14 | 0 | 122 | 170 | 29 | 77 | 7.26e-22 | 94.0 |
MS.gene031498.t1 | AT3G52440 | 48.936 | 94 | 40 | 3 | 93 | 180 | 11 | 102 | 8.52e-22 | 95.1 |
MS.gene031498.t1 | AT4G38000 | 62.500 | 56 | 20 | 1 | 121 | 176 | 40 | 94 | 2.62e-21 | 93.2 |
MS.gene031498.t1 | AT3G52440 | 64.912 | 57 | 20 | 0 | 124 | 180 | 27 | 83 | 2.75e-21 | 93.2 |
MS.gene031498.t1 | AT2G46590 | 60.656 | 61 | 22 | 1 | 109 | 169 | 57 | 115 | 3.25e-21 | 95.1 |
MS.gene031498.t1 | AT2G46590 | 60.656 | 61 | 22 | 1 | 109 | 169 | 69 | 127 | 3.70e-21 | 95.1 |
MS.gene031498.t1 | AT4G21050 | 43.564 | 101 | 55 | 1 | 115 | 213 | 17 | 117 | 6.27e-21 | 91.3 |
MS.gene031498.t1 | AT5G62940 | 69.388 | 49 | 15 | 0 | 124 | 172 | 75 | 123 | 9.65e-20 | 91.3 |
MS.gene031498.t1 | AT4G21040 | 47.297 | 74 | 37 | 1 | 102 | 175 | 7 | 78 | 1.09e-17 | 82.4 |
MS.gene031498.t1 | AT4G21080 | 57.692 | 52 | 22 | 0 | 124 | 175 | 27 | 78 | 1.44e-16 | 79.7 |
MS.gene031498.t1 | AT4G21030 | 59.091 | 44 | 18 | 0 | 124 | 167 | 23 | 66 | 4.11e-11 | 62.8 |
Find 123 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCAGTTCTGTCCCGACTTT+GGG | 0.197222 | 4.2:-27846247 | MS.gene031498:CDS |
CCCTAATGGATTACATAGTT+TGG | 0.197772 | 4.2:-27846722 | MS.gene031498:CDS |
GTAATTAGTTCTTTCCTTGA+TGG | 0.235655 | 4.2:+27847162 | None:intergenic |
CCAAACTATGTAATCCATTA+GGG | 0.240822 | 4.2:+27846722 | None:intergenic |
AGTAACTCCACCTGCATATT+GGG | 0.244547 | 4.2:-27846344 | MS.gene031498:CDS |
TCATCAAATCTAAGTGTCTT+TGG | 0.276528 | 4.2:+27846127 | None:intergenic |
CAATATGCAGGTGGAGTTAC+TGG | 0.285499 | 4.2:+27846346 | None:intergenic |
GTAAGAAATGTCAAAGATAC+TGG | 0.307217 | 4.2:-27846861 | MS.gene031498:CDS |
ATTGTTGAAGTAACAAAATT+TGG | 0.309323 | 4.2:+27846912 | None:intergenic |
CCCAAACTATGTAATCCATT+AGG | 0.311917 | 4.2:+27846721 | None:intergenic |
ATTCCATGGATAAGGCAAAA+AGG | 0.312423 | 4.2:+27846426 | None:intergenic |
CAGTAACTCCACCTGCATAT+TGG | 0.313645 | 4.2:-27846345 | MS.gene031498:CDS |
GCTAAACTTAATTCCCCTAA+TGG | 0.325757 | 4.2:-27846736 | MS.gene031498:CDS |
GTTTCAGTTGATGGAGTCTT+AGG | 0.326230 | 4.2:+27847057 | None:intergenic |
GAATTCTCGGTTTCAGTTGA+TGG | 0.328378 | 4.2:+27847048 | None:intergenic |
GCCTCCTCCATTGAGAGAAT+TGG | 0.332869 | 4.2:+27846045 | None:intergenic |
CCTAATGGATTACATAGTTT+GGG | 0.335592 | 4.2:-27846721 | MS.gene031498:CDS |
TAGAATGCTAATGGATAGTT+TGG | 0.337503 | 4.2:+27846373 | None:intergenic |
ATCATGCAAGTTCGTATAGT+AGG | 0.370122 | 4.2:-27846588 | MS.gene031498:CDS |
TCTCAGTTCTGTCCCGACTT+TGG | 0.371870 | 4.2:-27846248 | MS.gene031498:CDS |
AAAGGCCACACCGGCACAAA+TGG | 0.375943 | 4.2:-27846505 | MS.gene031498:CDS |
GACCCTGCGATAAAGCTCTT+TGG | 0.376470 | 4.2:-27848237 | MS.gene031498:CDS |
ACAAATGGGTTGGTAGATAA+AGG | 0.391250 | 4.2:-27846490 | MS.gene031498:CDS |
AGGGAAAATGATCACTCAAT+TGG | 0.410885 | 4.2:-27846568 | MS.gene031498:CDS |
CATCAAATCTAAGTGTCTTT+GGG | 0.411049 | 4.2:+27846128 | None:intergenic |
GAACTCTTTGCAGCTTCACT+TGG | 0.413363 | 4.2:+27846103 | None:intergenic |
TGATTAACAGAAGCACTTCC+TGG | 0.414702 | 4.2:+27846283 | None:intergenic |
AGAGGGAGATGAAGAGTCAT+TGG | 0.419013 | 4.2:+27848179 | None:intergenic |
AGATTTCAATAACGAATTCT+CGG | 0.425048 | 4.2:+27847035 | None:intergenic |
TTGGTAGATAAAGGAGTTGA+AGG | 0.425049 | 4.2:-27846481 | MS.gene031498:CDS |
GGATTACATAGTTTGGGAAA+TGG | 0.427090 | 4.2:-27846715 | MS.gene031498:CDS |
TGTATTGCAGAGGTGAATTC+TGG | 0.445396 | 4.2:+27848147 | None:intergenic |
AGTTCATTGTGGTCAAAGCT+TGG | 0.456620 | 4.2:-27846085 | MS.gene031498:CDS |
TTGAGTGTTTCCCCAAAGTC+GGG | 0.458025 | 4.2:+27846236 | None:intergenic |
ACTCAAAATTGCGTGTCAAA+TGG | 0.459020 | 4.2:-27846616 | MS.gene031498:CDS |
ACTGGAGTATAGAATGCTAA+TGG | 0.468260 | 4.2:+27846364 | None:intergenic |
GTGATTCATGTCCTTTACCT+TGG | 0.468280 | 4.2:+27846003 | None:intergenic |
GTTCATTGTGGTCAAAGCTT+GGG | 0.469560 | 4.2:-27846084 | MS.gene031498:CDS |
GACAAAGCCAATTCTCTCAA+TGG | 0.470994 | 4.2:-27846052 | MS.gene031498:CDS |
TGGATAGTTTGGTGGACAAA+AGG | 0.471372 | 4.2:+27846384 | None:intergenic |
GGAGATGAAGAGTCATTGGC+AGG | 0.477484 | 4.2:+27848183 | None:intergenic |
AATGGAGGAGGCATGTTCAA+TGG | 0.477902 | 4.2:-27846034 | MS.gene031498:CDS |
ATGCTATTGCATCGCGGGCA+TGG | 0.486276 | 4.2:+27846940 | None:intergenic |
GAATTCTGGTGGAGAAGAAG+AGG | 0.486452 | 4.2:+27848161 | None:intergenic |
ATTGCAGAATTCCATGGATA+AGG | 0.486834 | 4.2:+27846418 | None:intergenic |
GAATTAAGTTTAGCACCCTC+TGG | 0.491397 | 4.2:+27846745 | None:intergenic |
TTGCGGCGACCAGCTCCAAC+AGG | 0.495368 | 4.2:+27846811 | None:intergenic |
CCGCGATAAAGCCGCAGGGT+TGG | 0.504467 | 4.2:+27845952 | None:intergenic |
AATGATCACTCAATTGGAGT+TGG | 0.507132 | 4.2:-27846562 | MS.gene031498:CDS |
TCAAATTCATCAGATAGAAA+AGG | 0.510956 | 4.2:-27846523 | MS.gene031498:CDS |
AAGGCCACACCGGCACAAAT+GGG | 0.516822 | 4.2:-27846504 | MS.gene031498:CDS |
GGCATACAACCCCAATATGC+AGG | 0.516977 | 4.2:+27846334 | None:intergenic |
TGGATTTCAGTCCAAGGTAA+AGG | 0.518064 | 4.2:-27846014 | MS.gene031498:CDS |
AACTCTTTGCAGCTTCACTT+GGG | 0.519788 | 4.2:+27846104 | None:intergenic |
CAATTAGGTTTCCTCATGGA+AGG | 0.522646 | 4.2:+27845922 | None:intergenic |
CTTGAGTGTTTCCCCAAAGT+CGG | 0.525777 | 4.2:+27846235 | None:intergenic |
TGTCAAAGATACTGGACTGC+AGG | 0.528621 | 4.2:-27846853 | MS.gene031498:CDS |
ATCTACCAACCCATTTGTGC+CGG | 0.532135 | 4.2:+27846495 | None:intergenic |
TGTCCATGCTATTGCATCGC+GGG | 0.535971 | 4.2:+27846935 | None:intergenic |
CGAGACCGCGATAAAGCCGC+AGG | 0.536771 | 4.2:+27845947 | None:intergenic |
CGACTTTGGGGAAACACTCA+AGG | 0.540052 | 4.2:-27846234 | MS.gene031498:CDS |
TCATGCAAGTTCGTATAGTA+GGG | 0.541345 | 4.2:-27846587 | MS.gene031498:CDS |
TCAGTTGATGGAGTCTTAGG+AGG | 0.550036 | 4.2:+27847060 | None:intergenic |
TTCACAATTAGGTTTCCTCA+TGG | 0.553418 | 4.2:+27845918 | None:intergenic |
AATGCTAATGGATAGTTTGG+TGG | 0.554354 | 4.2:+27846376 | None:intergenic |
GAGACACATGGTATATTCCA+TGG | 0.554398 | 4.2:+27846307 | None:intergenic |
CTTCCAAAGAGCTTTATCGC+AGG | 0.556819 | 4.2:+27848234 | None:intergenic |
ACAATGAGAAATGTTCCTGT+TGG | 0.557862 | 4.2:-27846826 | MS.gene031498:CDS |
TAGTTTGGTGGACAAAAGGT+AGG | 0.562573 | 4.2:+27846388 | None:intergenic |
AATTCTGGTGGAGAAGAAGA+GGG | 0.562827 | 4.2:+27848162 | None:intergenic |
GCCAATTCTCTCAATGGAGG+AGG | 0.563194 | 4.2:-27846046 | MS.gene031498:CDS |
ATCCTCGGTGGTTTGTTGCG+AGG | 0.566064 | 4.2:+27847122 | None:intergenic |
TTCCAAAGAGCTTTATCGCA+GGG | 0.567023 | 4.2:+27848235 | None:intergenic |
GAATATGTTGCAACTGAGGA+GGG | 0.570048 | 4.2:+27846455 | None:intergenic |
GGAGGCATTGCAGAATTCCA+TGG | 0.572249 | 4.2:+27846412 | None:intergenic |
TTTGGTGGACAAAAGGTAGG+AGG | 0.574664 | 4.2:+27846391 | None:intergenic |
GGAATATGTTGCAACTGAGG+AGG | 0.574863 | 4.2:+27846454 | None:intergenic |
AGAAATGTTCCTGTTGGAGC+TGG | 0.575931 | 4.2:-27846820 | MS.gene031498:CDS |
TGTGAGAGCTCTTAAATCCT+CGG | 0.579385 | 4.2:+27847107 | None:intergenic |
CTTGGAATATGTTGCAACTG+AGG | 0.581444 | 4.2:+27846451 | None:intergenic |
TTGGGGAAACACTCAAGGGA+TGG | 0.586619 | 4.2:-27846229 | MS.gene031498:CDS |
GGGGTTGTATGCCACCTCCA+TGG | 0.588317 | 4.2:-27846324 | MS.gene031498:CDS |
CATGGTATATTCCATGGAGG+TGG | 0.595774 | 4.2:+27846313 | None:intergenic |
GGTGGACAAAAGGTAGGAGG+AGG | 0.603448 | 4.2:+27846394 | None:intergenic |
CCAACCCATTTGTGCCGGTG+TGG | 0.605033 | 4.2:+27846500 | None:intergenic |
CGACATTTGATAATTCCAGA+GGG | 0.606272 | 4.2:-27846760 | MS.gene031498:CDS |
TCAGTTCTGTCCCGACTTTG+GGG | 0.606745 | 4.2:-27846246 | MS.gene031498:CDS |
CCACACCGGCACAAATGGGT+TGG | 0.611096 | 4.2:-27846500 | MS.gene031498:CDS |
GTAACTCCACCTGCATATTG+GGG | 0.611433 | 4.2:-27846343 | MS.gene031498:CDS |
CAAAGATACTGGACTGCAGG+AGG | 0.611856 | 4.2:-27846850 | MS.gene031498:CDS |
GTTCAATGGATTTCAGTCCA+AGG | 0.615097 | 4.2:-27846020 | MS.gene031498:CDS |
CTGCGATAAAGCTCTTTGGA+AGG | 0.619750 | 4.2:-27848233 | MS.gene031498:CDS |
AATATACCATGTGTCTCACC+AGG | 0.620306 | 4.2:-27846301 | MS.gene031498:CDS |
GATGTTCAATACAGAAGCCA+TGG | 0.623380 | 4.2:+27846648 | None:intergenic |
GAGATGAAGAGTCATTGGCA+GGG | 0.625244 | 4.2:+27848184 | None:intergenic |
TCGACATTTGATAATTCCAG+AGG | 0.625580 | 4.2:-27846761 | MS.gene031498:CDS |
TCATTGGCAGGGATGATCAG+TGG | 0.630276 | 4.2:+27848195 | None:intergenic |
GCACTTCCTGGTGAGACACA+TGG | 0.630353 | 4.2:+27846295 | None:intergenic |
AGTTTCATGCTGTATTGCAG+AGG | 0.631365 | 4.2:+27848137 | None:intergenic |
GACTTTGGGGAAACACTCAA+GGG | 0.631484 | 4.2:-27846233 | MS.gene031498:CDS |
GTGTCCATGCTATTGCATCG+CGG | 0.634519 | 4.2:+27846934 | None:intergenic |
ATGCCCGCGATGCAATAGCA+TGG | 0.635421 | 4.2:-27846938 | MS.gene031498:CDS |
CCAACCCTGCGGCTTTATCG+CGG | 0.637960 | 4.2:-27845952 | MS.gene031498:CDS |
GGGATGATCAGTGGAAGAAG+CGG | 0.640321 | 4.2:+27848204 | None:intergenic |
GCAGGGTTGGCATACATCAG+CGG | 0.645757 | 4.2:+27845965 | None:intergenic |
CAAACTATGTAATCCATTAG+GGG | 0.651674 | 4.2:+27846723 | None:intergenic |
TCAGATAGAAAAGGCCACAC+CGG | 0.654081 | 4.2:-27846514 | MS.gene031498:CDS |
GAGAGCTCTTAAATCCTCGG+TGG | 0.655637 | 4.2:+27847110 | None:intergenic |
CTAATTACAGCACAAGACGA+TGG | 0.658149 | 4.2:-27847147 | MS.gene031498:CDS |
AAAGCCAATTCTCTCAATGG+AGG | 0.662101 | 4.2:-27846049 | MS.gene031498:CDS |
TGCAATACAGCATGAAACTG+AGG | 0.664237 | 4.2:-27848133 | MS.gene031498:intron |
GCCATGGTGTTACAAAGCGG+AGG | 0.666467 | 4.2:+27846664 | None:intergenic |
ATTGCAGAGGTGAATTCTGG+TGG | 0.675104 | 4.2:+27848150 | None:intergenic |
TCCTCCGCTTTGTAACACCA+TGG | 0.687107 | 4.2:-27846665 | MS.gene031498:CDS |
GGTAAAGGACATGAATCACA+CGG | 0.721107 | 4.2:-27845999 | MS.gene031498:CDS |
ATACAACCCCAATATGCAGG+TGG | 0.724114 | 4.2:+27846337 | None:intergenic |
GAAGCCATGGTGTTACAAAG+CGG | 0.731105 | 4.2:+27846661 | None:intergenic |
GAGACCGCGATAAAGCCGCA+GGG | 0.731318 | 4.2:+27845948 | None:intergenic |
GCGGTCTCGTACCTTCCATG+AGG | 0.732623 | 4.2:-27845933 | MS.gene031498:CDS |
ACACATGGTATATTCCATGG+AGG | 0.757531 | 4.2:+27846310 | None:intergenic |
GCTGATGTATGCCAACCCTG+CGG | 0.770728 | 4.2:-27845963 | MS.gene031498:CDS |
AAGCTGCAAAGAGTTCATTG+TGG | 0.774211 | 4.2:-27846096 | MS.gene031498:CDS |
AGCCTCGCAACAAACCACCG+AGG | 0.815203 | 4.2:-27847124 | MS.gene031498:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATAAAAATAGCAGAAAA+GGG | + | chr4.2:27846769-27846788 | None:intergenic | 15.0% |
!! | TTATATAAAAATAGCAGAAA+AGG | + | chr4.2:27846770-27846789 | None:intergenic | 15.0% |
!!! | CAATTATCAATTTTTTGTTT+TGG | - | chr4.2:27846441-27846460 | MS.gene031498:CDS | 15.0% |
!!! | TTAATCATATTCATTGTTTT+AGG | - | chr4.2:27846990-27847009 | MS.gene031498:CDS | 15.0% |
!! | AATTAACTGCTTAAGAAAAA+TGG | + | chr4.2:27846157-27846176 | None:intergenic | 20.0% |
!! | ATTAACTGCTTAAGAAAAAT+GGG | + | chr4.2:27846156-27846175 | None:intergenic | 20.0% |
!! | ATTGTTGAAGTAACAAAATT+TGG | + | chr4.2:27847268-27847287 | None:intergenic | 20.0% |
!! | TTAAGCAGTTAATTGTTAAT+GGG | - | chr4.2:27846163-27846182 | MS.gene031498:CDS | 20.0% |
!!! | TTGAATCTTTTATTAAGTTG+TGG | - | chr4.2:27846299-27846318 | MS.gene031498:CDS | 20.0% |
!!! | TTTGTTTTTTACTTCTATTG+AGG | - | chr4.2:27846906-27846925 | MS.gene031498:CDS | 20.0% |
! | AAATTGGATCGAATTTATTC+TGG | - | chr4.2:27846352-27846371 | MS.gene031498:CDS | 25.0% |
! | AACTTACTGTATACACAAAA+GGG | + | chr4.2:27846957-27846976 | None:intergenic | 25.0% |
! | ACATTTCTTACAAAAATGAC+GGG | + | chr4.2:27847307-27847326 | None:intergenic | 25.0% |
! | AGATTTCAATAACGAATTCT+CGG | + | chr4.2:27847145-27847164 | None:intergenic | 25.0% |
! | CTTAAGCAGTTAATTGTTAA+TGG | - | chr4.2:27846162-27846181 | MS.gene031498:CDS | 25.0% |
! | GACATTTCTTACAAAAATGA+CGG | + | chr4.2:27847308-27847327 | None:intergenic | 25.0% |
! | TAACTTACTGTATACACAAA+AGG | + | chr4.2:27846958-27846977 | None:intergenic | 25.0% |
! | TCAAATTCATCAGATAGAAA+AGG | - | chr4.2:27847654-27847673 | MS.gene031498:intron | 25.0% |
!! | TAGATAAGTTTTTGTTCTTG+CGG | + | chr4.2:27847386-27847405 | None:intergenic | 25.0% |
!! | TTTTGATGTCAATTGAATTG+AGG | - | chr4.2:27846203-27846222 | MS.gene031498:CDS | 25.0% |
!!! | TTTCTTCAGAGTTTTTTCTT+CGG | + | chr4.2:27847202-27847221 | None:intergenic | 25.0% |
CAAACTATGTAATCCATTAG+GGG | + | chr4.2:27847457-27847476 | None:intergenic | 30.0% | |
CATCAAATCTAAGTGTCTTT+GGG | + | chr4.2:27848052-27848071 | None:intergenic | 30.0% | |
CATTTCTTACAAAAATGACG+GGG | + | chr4.2:27847306-27847325 | None:intergenic | 30.0% | |
CCAAACTATGTAATCCATTA+GGG | + | chr4.2:27847458-27847477 | None:intergenic | 30.0% | |
GAAAAAACCAAAGCAAAACA+AGG | + | chr4.2:27846422-27846441 | None:intergenic | 30.0% | |
GCATACGTGTATAAAAACAT+TGG | + | chr4.2:27846864-27846883 | None:intergenic | 30.0% | |
GTAAGAAATGTCAAAGATAC+TGG | - | chr4.2:27847316-27847335 | MS.gene031498:intron | 30.0% | |
TAACCAAAACACTTCAATCA+AGG | + | chr4.2:27846529-27846548 | None:intergenic | 30.0% | |
TCAATCATATGAAACCTTCA+TGG | + | chr4.2:27846076-27846095 | None:intergenic | 30.0% | |
TCATCAAATCTAAGTGTCTT+TGG | + | chr4.2:27848053-27848072 | None:intergenic | 30.0% | |
TCTATGAGAATCCATATATG+AGG | - | chr4.2:27846692-27846711 | MS.gene031498:CDS | 30.0% | |
! | AATAGTTTAGTTCAAGACCA+TGG | + | chr4.2:27846558-27846577 | None:intergenic | 30.0% |
! | AATTTTAAGCGCAAAGTGAA+AGG | + | chr4.2:27846672-27846691 | None:intergenic | 30.0% |
! | GGTCTTGAACTAAACTATTT+TGG | - | chr4.2:27846559-27846578 | MS.gene031498:CDS | 30.0% |
! | GTAATTAGTTCTTTCCTTGA+TGG | + | chr4.2:27847018-27847037 | None:intergenic | 30.0% |
! | TAGAATGCTAATGGATAGTT+TGG | + | chr4.2:27847807-27847826 | None:intergenic | 30.0% |
!! | CCTAATGGATTACATAGTTT+GGG | - | chr4.2:27847456-27847475 | MS.gene031498:intron | 30.0% |
!! | CTGCATATAATTTTAGCATG+AGG | + | chr4.2:27846805-27846824 | None:intergenic | 30.0% |
!! | TCATTTTCAGGCTTTTCTTT+TGG | + | chr4.2:27847999-27848018 | None:intergenic | 30.0% |
!! | TGTTTTTATACACGTATGCT+CGG | - | chr4.2:27846865-27846884 | MS.gene031498:CDS | 30.0% |
AATGATCACTCAATTGGAGT+TGG | - | chr4.2:27847615-27847634 | MS.gene031498:intron | 35.0% | |
ACAATGAGAAATGTTCCTGT+TGG | - | chr4.2:27847351-27847370 | MS.gene031498:intron | 35.0% | |
ACTCAAAATTGCGTGTCAAA+TGG | - | chr4.2:27847561-27847580 | MS.gene031498:intron | 35.0% | |
ACTGCTTAAGAAAAATGGGT+TGG | + | chr4.2:27846152-27846171 | None:intergenic | 35.0% | |
ACTGGAGTATAGAATGCTAA+TGG | + | chr4.2:27847816-27847835 | None:intergenic | 35.0% | |
AGGGAAAATGATCACTCAAT+TGG | - | chr4.2:27847609-27847628 | MS.gene031498:intron | 35.0% | |
ATCATGCAAGTTCGTATAGT+AGG | - | chr4.2:27847589-27847608 | MS.gene031498:intron | 35.0% | |
ATTCCATGGATAAGGCAAAA+AGG | + | chr4.2:27847754-27847773 | None:intergenic | 35.0% | |
ATTCGATCCAATTTCACTGA+TGG | + | chr4.2:27846346-27846365 | None:intergenic | 35.0% | |
ATTGCAGAATTCCATGGATA+AGG | + | chr4.2:27847762-27847781 | None:intergenic | 35.0% | |
CCCAAACTATGTAATCCATT+AGG | + | chr4.2:27847459-27847478 | None:intergenic | 35.0% | |
GCTAAACTTAATTCCCCTAA+TGG | - | chr4.2:27847441-27847460 | MS.gene031498:intron | 35.0% | |
GGAATTGCTGAAATTCTCAA+TGG | - | chr4.2:27846224-27846243 | MS.gene031498:CDS | 35.0% | |
GGATTACATAGTTTGGGAAA+TGG | - | chr4.2:27847462-27847481 | MS.gene031498:intron | 35.0% | |
TATTGTAGGAGACAAGAGTA+AGG | + | chr4.2:27846622-27846641 | None:intergenic | 35.0% | |
TCATGCAAGTTCGTATAGTA+GGG | - | chr4.2:27847590-27847609 | MS.gene031498:intron | 35.0% | |
TGTGGCTCAAATTCATTATG+TGG | - | chr4.2:27846317-27846336 | MS.gene031498:CDS | 35.0% | |
TTCCATGGATAAGGCAAAAA+GGG | + | chr4.2:27847753-27847772 | None:intergenic | 35.0% | |
TTCGATCCAATTTCACTGAT+GGG | + | chr4.2:27846345-27846364 | None:intergenic | 35.0% | |
TTGGTAGATAAAGGAGTTGA+AGG | - | chr4.2:27847696-27847715 | MS.gene031498:intron | 35.0% | |
! | AATGCTAATGGATAGTTTGG+TGG | + | chr4.2:27847804-27847823 | None:intergenic | 35.0% |
! | CGACATTTGATAATTCCAGA+GGG | - | chr4.2:27847417-27847436 | MS.gene031498:intron | 35.0% |
! | TCGACATTTGATAATTCCAG+AGG | - | chr4.2:27847416-27847435 | MS.gene031498:intron | 35.0% |
! | TTCTTTTGGTGAATTGACTG+AGG | + | chr4.2:27847985-27848004 | None:intergenic | 35.0% |
!! | ACAAATGGGTTGGTAGATAA+AGG | - | chr4.2:27847687-27847706 | MS.gene031498:intron | 35.0% |
!! | CCCTAATGGATTACATAGTT+TGG | - | chr4.2:27847455-27847474 | MS.gene031498:intron | 35.0% |
!! | GTGCTATTGTGTTCATTTTC+AGG | + | chr4.2:27848011-27848030 | None:intergenic | 35.0% |
!! | TTGCCTTGATTGAAGTGTTT+TGG | - | chr4.2:27846523-27846542 | MS.gene031498:CDS | 35.0% |
!!! | CATTGTTTTAGGAACCATCA+AGG | - | chr4.2:27847001-27847020 | MS.gene031498:CDS | 35.0% |
!!! | TCCATGGACTGTTAGTTTTT+AGG | - | chr4.2:27846596-27846615 | MS.gene031498:CDS | 35.0% |
!!! | TGGTTTACCTTGTTTTGCTT+TGG | - | chr4.2:27846412-27846431 | MS.gene031498:CDS | 35.0% |
!!! | TGTTTTGGTTACTTTTGCCA+TGG | - | chr4.2:27846538-27846557 | MS.gene031498:CDS | 35.0% |
AAAGCCAATTCTCTCAATGG+AGG | - | chr4.2:27848128-27848147 | MS.gene031498:intron | 40.0% | |
AACTCTTTGCAGCTTCACTT+GGG | + | chr4.2:27848076-27848095 | None:intergenic | 40.0% | |
AAGCTGCAAAGAGTTCATTG+TGG | - | chr4.2:27848081-27848100 | MS.gene031498:intron | 40.0% | |
AATATACCATGTGTCTCACC+AGG | - | chr4.2:27847876-27847895 | MS.gene031498:intron | 40.0% | |
AATTCTGGTGGAGAAGAAGA+GGG | + | chr4.2:27846018-27846037 | None:intergenic | 40.0% | |
ACACATGGTATATTCCATGG+AGG | + | chr4.2:27847870-27847889 | None:intergenic | 40.0% | |
AGTAACTCCACCTGCATATT+GGG | - | chr4.2:27847833-27847852 | MS.gene031498:intron | 40.0% | |
AGTTCATTGTGGTCAAAGCT+TGG | - | chr4.2:27848092-27848111 | MS.gene031498:intron | 40.0% | |
AGTTTCATGCTGTATTGCAG+AGG | + | chr4.2:27846043-27846062 | None:intergenic | 40.0% | |
CTAATTACAGCACAAGACGA+TGG | - | chr4.2:27847030-27847049 | MS.gene031498:CDS | 40.0% | |
CTTGGAATATGTTGCAACTG+AGG | + | chr4.2:27847729-27847748 | None:intergenic | 40.0% | |
GAATATGTTGCAACTGAGGA+GGG | + | chr4.2:27847725-27847744 | None:intergenic | 40.0% | |
GAATTAAGTTTAGCACCCTC+TGG | + | chr4.2:27847435-27847454 | None:intergenic | 40.0% | |
GAATTCTCGGTTTCAGTTGA+TGG | + | chr4.2:27847132-27847151 | None:intergenic | 40.0% | |
GACAAAGCCAATTCTCTCAA+TGG | - | chr4.2:27848125-27848144 | MS.gene031498:intron | 40.0% | |
GAGACACATGGTATATTCCA+TGG | + | chr4.2:27847873-27847892 | None:intergenic | 40.0% | |
GATGTTCAATACAGAAGCCA+TGG | + | chr4.2:27847532-27847551 | None:intergenic | 40.0% | |
GCCTAAAAACTAACAGTCCA+TGG | + | chr4.2:27846600-27846619 | None:intergenic | 40.0% | |
GGTAAAGGACATGAATCACA+CGG | - | chr4.2:27848178-27848197 | MS.gene031498:CDS | 40.0% | |
GTGATTCATGTCCTTTACCT+TGG | + | chr4.2:27848177-27848196 | None:intergenic | 40.0% | |
GTTCATTGTGGTCAAAGCTT+GGG | - | chr4.2:27848093-27848112 | MS.gene031498:intron | 40.0% | |
TCCTACAATACTTATGCCTC+TGG | - | chr4.2:27846632-27846651 | MS.gene031498:CDS | 40.0% | |
TGACTCTGACTCCTCATATA+TGG | + | chr4.2:27846706-27846725 | None:intergenic | 40.0% | |
TGCAATACAGCATGAAACTG+AGG | - | chr4.2:27846044-27846063 | MS.gene031498:CDS | 40.0% | |
TGGATTTCAGTCCAAGGTAA+AGG | - | chr4.2:27848163-27848182 | MS.gene031498:CDS | 40.0% | |
TGTATTGCAGAGGTGAATTC+TGG | + | chr4.2:27846033-27846052 | None:intergenic | 40.0% | |
TGTGAGAGCTCTTAAATCCT+CGG | + | chr4.2:27847073-27847092 | None:intergenic | 40.0% | |
! | ACCAGAGGCATAAGTATTGT+AGG | + | chr4.2:27846636-27846655 | None:intergenic | 40.0% |
! | GTTCAATGGATTTCAGTCCA+AGG | - | chr4.2:27848157-27848176 | MS.gene031498:CDS | 40.0% |
! | TAGTTTGGTGGACAAAAGGT+AGG | + | chr4.2:27847792-27847811 | None:intergenic | 40.0% |
! | TGGATAGTTTGGTGGACAAA+AGG | + | chr4.2:27847796-27847815 | None:intergenic | 40.0% |
! | TTCCAAAGAGCTTTATCGCA+GGG | + | chr4.2:27845945-27845964 | None:intergenic | 40.0% |
!! | CGGGCATGGAATTATTTTGT+CGG | + | chr4.2:27847226-27847245 | None:intergenic | 40.0% |
!! | GGGCATGGAATTATTTTGTC+GGG | + | chr4.2:27847225-27847244 | None:intergenic | 40.0% |
!! | GGTTAGACACTTTTTGTCCA+TGG | - | chr4.2:27846580-27846599 | MS.gene031498:CDS | 40.0% |
!! | GTTTCAGTTGATGGAGTCTT+AGG | + | chr4.2:27847123-27847142 | None:intergenic | 40.0% |
!! | TGATTAACAGAAGCACTTCC+TGG | + | chr4.2:27847897-27847916 | None:intergenic | 40.0% |
AGAAATGTTCCTGTTGGAGC+TGG | - | chr4.2:27847357-27847376 | MS.gene031498:intron | 45.0% | |
AGAGGGAGATGAAGAGTCAT+TGG | + | chr4.2:27846001-27846020 | None:intergenic | 45.0% | |
ATACAACCCCAATATGCAGG+TGG | + | chr4.2:27847843-27847862 | None:intergenic | 45.0% | |
ATCTACCAACCCATTTGTGC+CGG | + | chr4.2:27847685-27847704 | None:intergenic | 45.0% | |
ATTGCAGAGGTGAATTCTGG+TGG | + | chr4.2:27846030-27846049 | None:intergenic | 45.0% | |
CAATATGCAGGTGGAGTTAC+TGG | + | chr4.2:27847834-27847853 | None:intergenic | 45.0% | |
CAGTAACTCCACCTGCATAT+TGG | - | chr4.2:27847832-27847851 | MS.gene031498:intron | 45.0% | |
CATGGTATATTCCATGGAGG+TGG | + | chr4.2:27847867-27847886 | None:intergenic | 45.0% | |
CTGCGATAAAGCTCTTTGGA+AGG | - | chr4.2:27845944-27845963 | MS.gene031498:CDS | 45.0% | |
CTTGAGTGTTTCCCCAAAGT+CGG | + | chr4.2:27847945-27847964 | None:intergenic | 45.0% | |
GAACTCTTTGCAGCTTCACT+TGG | + | chr4.2:27848077-27848096 | None:intergenic | 45.0% | |
GAATTCTGGTGGAGAAGAAG+AGG | + | chr4.2:27846019-27846038 | None:intergenic | 45.0% | |
GAGATGAAGAGTCATTGGCA+GGG | + | chr4.2:27845996-27846015 | None:intergenic | 45.0% | |
GGAATATGTTGCAACTGAGG+AGG | + | chr4.2:27847726-27847745 | None:intergenic | 45.0% | |
GGATAAGGCAAAAAGGGACT+TGG | + | chr4.2:27847747-27847766 | None:intergenic | 45.0% | |
GGTTAGTGAATTCACACCAG+AGG | + | chr4.2:27846651-27846670 | None:intergenic | 45.0% | |
GTAACTCCACCTGCATATTG+GGG | - | chr4.2:27847834-27847853 | MS.gene031498:intron | 45.0% | |
GTGGTTCCCATCAGTGAAAT+TGG | - | chr4.2:27846336-27846355 | MS.gene031498:CDS | 45.0% | |
TCAGATAGAAAAGGCCACAC+CGG | - | chr4.2:27847663-27847682 | MS.gene031498:intron | 45.0% | |
TGTCAAAGATACTGGACTGC+AGG | - | chr4.2:27847324-27847343 | MS.gene031498:intron | 45.0% | |
TTGAGTGTTTCCCCAAAGTC+GGG | + | chr4.2:27847944-27847963 | None:intergenic | 45.0% | |
! | AATGGAGGAGGCATGTTCAA+TGG | - | chr4.2:27848143-27848162 | MS.gene031498:CDS | 45.0% |
! | CTTCCAAAGAGCTTTATCGC+AGG | + | chr4.2:27845946-27845965 | None:intergenic | 45.0% |
! | GACTTTGGGGAAACACTCAA+GGG | - | chr4.2:27847944-27847963 | MS.gene031498:intron | 45.0% |
! | GTCCCTTTTTGCCTTATCCA+TGG | - | chr4.2:27847748-27847767 | MS.gene031498:intron | 45.0% |
! | TCTTACAAAAATGACGGGGC+TGG | + | chr4.2:27847302-27847321 | None:intergenic | 45.0% |
! | TTTGGTGGACAAAAGGTAGG+AGG | + | chr4.2:27847789-27847808 | None:intergenic | 45.0% |
!! | GAAGCCATGGTGTTACAAAG+CGG | + | chr4.2:27847519-27847538 | None:intergenic | 45.0% |
!! | TCAGTTGATGGAGTCTTAGG+AGG | + | chr4.2:27847120-27847139 | None:intergenic | 45.0% |
!! | ATAATATTTAATATATTATG+TGG | - | chr4.2:27846392-27846411 | MS.gene031498:CDS | 5.0% |
AACTGAGGTACGTGCCATGA+AGG | - | chr4.2:27846059-27846078 | MS.gene031498:CDS | 50.0% | |
CAAAGATACTGGACTGCAGG+AGG | - | chr4.2:27847327-27847346 | MS.gene031498:intron | 50.0% | |
CTCAGTTCTGTCCCGACTTT+GGG | - | chr4.2:27847930-27847949 | MS.gene031498:intron | 50.0% | |
GACCCTGCGATAAAGCTCTT+TGG | - | chr4.2:27845940-27845959 | MS.gene031498:CDS | 50.0% | |
GAGAGCTCTTAAATCCTCGG+TGG | + | chr4.2:27847070-27847089 | None:intergenic | 50.0% | |
GCCAATTCTCTCAATGGAGG+AGG | - | chr4.2:27848131-27848150 | MS.gene031498:intron | 50.0% | |
GCCTCCTCCATTGAGAGAAT+TGG | + | chr4.2:27848135-27848154 | None:intergenic | 50.0% | |
GGAGATGAAGAGTCATTGGC+AGG | + | chr4.2:27845997-27846016 | None:intergenic | 50.0% | |
GGCATACAACCCCAATATGC+AGG | + | chr4.2:27847846-27847865 | None:intergenic | 50.0% | |
GGGATGATCAGTGGAAGAAG+CGG | + | chr4.2:27845976-27845995 | None:intergenic | 50.0% | |
GTGTCCATGCTATTGCATCG+CGG | + | chr4.2:27847246-27847265 | None:intergenic | 50.0% | |
TCAGTTCTGTCCCGACTTTG+GGG | - | chr4.2:27847931-27847950 | MS.gene031498:intron | 50.0% | |
TCATTGGCAGGGATGATCAG+TGG | + | chr4.2:27845985-27846004 | None:intergenic | 50.0% | |
TCCTCCGCTTTGTAACACCA+TGG | - | chr4.2:27847512-27847531 | MS.gene031498:intron | 50.0% | |
TCTCAGTTCTGTCCCGACTT+TGG | - | chr4.2:27847929-27847948 | MS.gene031498:intron | 50.0% | |
TGTCCATGCTATTGCATCGC+GGG | + | chr4.2:27847245-27847264 | None:intergenic | 50.0% | |
TTGGGGAAACACTCAAGGGA+TGG | - | chr4.2:27847948-27847967 | MS.gene031498:intron | 50.0% | |
! | CGACTTTGGGGAAACACTCA+AGG | - | chr4.2:27847943-27847962 | MS.gene031498:intron | 50.0% |
!! | GGAGGCATTGCAGAATTCCA+TGG | + | chr4.2:27847768-27847787 | None:intergenic | 50.0% |
AAAGGCCACACCGGCACAAA+TGG | - | chr4.2:27847672-27847691 | MS.gene031498:intron | 55.0% | |
AAGGCCACACCGGCACAAAT+GGG | - | chr4.2:27847673-27847692 | MS.gene031498:intron | 55.0% | |
ATGCCCGCGATGCAATAGCA+TGG | - | chr4.2:27847239-27847258 | MS.gene031498:intron | 55.0% | |
ATGCTATTGCATCGCGGGCA+TGG | + | chr4.2:27847240-27847259 | None:intergenic | 55.0% | |
GCACTTCCTGGTGAGACACA+TGG | + | chr4.2:27847885-27847904 | None:intergenic | 55.0% | |
GCTGATGTATGCCAACCCTG+CGG | - | chr4.2:27848214-27848233 | MS.gene031498:CDS | 55.0% | |
GGTGGACAAAAGGTAGGAGG+AGG | + | chr4.2:27847786-27847805 | None:intergenic | 55.0% | |
! | GCAGGGTTGGCATACATCAG+CGG | + | chr4.2:27848215-27848234 | None:intergenic | 55.0% |
!! | ATCCTCGGTGGTTTGTTGCG+AGG | + | chr4.2:27847058-27847077 | None:intergenic | 55.0% |
!! | GCCATGGTGTTACAAAGCGG+AGG | + | chr4.2:27847516-27847535 | None:intergenic | 55.0% |
AGCCTCGCAACAAACCACCG+AGG | - | chr4.2:27847053-27847072 | MS.gene031498:CDS | 60.0% | |
CCACACCGGCACAAATGGGT+TGG | - | chr4.2:27847677-27847696 | MS.gene031498:intron | 60.0% | |
GAGACCGCGATAAAGCCGCA+GGG | + | chr4.2:27848232-27848251 | None:intergenic | 60.0% | |
GCGGTCTCGTACCTTCCATG+AGG | - | chr4.2:27848244-27848263 | MS.gene031498:CDS | 60.0% | |
GGGGTTGTATGCCACCTCCA+TGG | - | chr4.2:27847853-27847872 | MS.gene031498:intron | 60.0% | |
! | CCAACCCATTTGTGCCGGTG+TGG | + | chr4.2:27847680-27847699 | None:intergenic | 60.0% |
! | CCAACCCTGCGGCTTTATCG+CGG | - | chr4.2:27848225-27848244 | MS.gene031498:CDS | 60.0% |
CCGCGATAAAGCCGCAGGGT+TGG | + | chr4.2:27848228-27848247 | None:intergenic | 65.0% | |
CGAGACCGCGATAAAGCCGC+AGG | + | chr4.2:27848233-27848252 | None:intergenic | 65.0% | |
TTGCGGCGACCAGCTCCAAC+AGG | + | chr4.2:27847369-27847388 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 27845925 | 27848274 | 27845925 | ID=MS.gene031498 |
chr4.2 | mRNA | 27845925 | 27848274 | 27845925 | ID=MS.gene031498.t1;Parent=MS.gene031498 |
chr4.2 | exon | 27848134 | 27848274 | 27848134 | ID=MS.gene031498.t1.exon1;Parent=MS.gene031498.t1 |
chr4.2 | CDS | 27848134 | 27848274 | 27848134 | ID=cds.MS.gene031498.t1;Parent=MS.gene031498.t1 |
chr4.2 | exon | 27845925 | 27847187 | 27845925 | ID=MS.gene031498.t1.exon2;Parent=MS.gene031498.t1 |
chr4.2 | CDS | 27845925 | 27847187 | 27845925 | ID=cds.MS.gene031498.t1;Parent=MS.gene031498.t1 |
Gene Sequence |
Protein sequence |