AlfalfaGEDB | MS.gene031526

M. sativa cultivar XinJiangDaYe / MS.gene031526

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031526.t1	XP_003607708.1	99	287	2	1	1	286	151	437	5.00E-158	567

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031526.t1	G7JF39	99.0	287	2	1	1	286	151	437	3.6e-158	567.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene031526.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031526.t1	MTR_4g081420	98.955	287	2	1	1	286	151	437	0.0	578
MS.gene031526.t1	MTR_2g010860	53.147	286	124	6	4	285	97	376	1.63e-90	273
MS.gene031526.t1	MTR_2g010870	54.348	276	112	5	22	285	82	355	7.36e-90	271
MS.gene031526.t1	MTR_3g072920	51.240	242	104	7	49	283	214	448	4.31e-71	226
MS.gene031526.t1	MTR_1g024980	50.840	238	104	3	49	283	171	398	3.99e-70	222
MS.gene031526.t1	MTR_3g463270	44.167	240	117	8	54	283	154	386	1.56e-55	184
MS.gene031526.t1	MTR_5g012220	37.736	212	103	8	76	285	105	289	2.31e-29	113
MS.gene031526.t1	MTR_5g094440	32.864	213	129	5	73	283	68	268	3.37e-27	107
MS.gene031526.t1	MTR_4g101450	35.096	208	99	6	79	283	98	272	3.69e-27	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031526.t1	AT5G54630	71.382	304	65	7	1	285	171	471	6.96e-143	410
MS.gene031526.t1	AT4G27240	75.969	258	59	3	31	285	173	430	6.46e-137	394
MS.gene031526.t1	AT4G27240	74.783	230	55	3	31	257	173	402	5.84e-116	340
MS.gene031526.t1	AT1G11490	50.199	251	111	5	44	285	119	364	8.26e-73	228
MS.gene031526.t1	AT1G11490	50.199	251	111	5	44	285	119	364	8.26e-73	228
MS.gene031526.t1	AT1G75710	46.484	256	110	5	54	285	206	458	2.00e-61	201
MS.gene031526.t1	AT2G29660	41.245	257	126	7	46	283	120	370	1.27e-48	166
MS.gene031526.t1	AT1G62520	38.863	211	96	7	77	285	100	279	5.71e-30	114
MS.gene031526.t1	AT4G22560	38.140	215	87	9	73	283	89	261	1.49e-28	110
MS.gene031526.t1	AT4G12450	32.719	217	97	7	77	283	97	274	1.19e-22	95.1

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Find 49 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAAGGTGATTTCCT+TGG	0.433309	4.2:+28112788	None:intergenic
AAAATATTTACCAGCATGCT+TGG	0.405089	4.2:+28112613	None:intergenic
AAACAAGGAAGAAGAGCTCT+AGG	0.526190	4.2:+28111598	None:intergenic
AAATAGTGGAAATTATATGC+AGG	0.573880	4.2:-28112152	MS.gene031526:CDS
AAATTATATGCAGGACAAGC+TGG	0.530091	4.2:-28112143	MS.gene031526:CDS
AACTCCAGAAGAAACATCCT+AGG	0.587019	4.2:-28112005	MS.gene031526:CDS
AAGGAGTTGAAAGGTGGAAT+AGG	0.409316	4.2:-28111841	MS.gene031526:CDS
ACCAAGAGAACAAGCTACTG+TGG	0.672385	4.2:+28111942	None:intergenic
ACCACAGTAGCTTGTTCTCT+TGG	0.380190	4.2:-28111943	MS.gene031526:CDS
ACTGGATTTGATTCTTTGGC+TGG	0.418812	4.2:-28111667	MS.gene031526:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAAAGGTGATTTCCT+TGG	+	chr4.2:28111621-28111640	None:intergenic	30.0%
AAAATATTTACCAGCATGCT+TGG	+	chr4.2:28111796-28111815	None:intergenic	30.0%
AGATTCATCAAGGAAAATAG+TGG	-	chr4.2:28112240-28112259	MS.gene031526:intron	30.0%
AGCATATCAGATAAAGACTA+TGG	+	chr4.2:28111882-28111901	None:intergenic	30.0%
AGGATAAAGTAGATTGGAAA+AGG	+	chr4.2:28112075-28112094	None:intergenic	30.0%
AGGTCTTTATTCAAACATTG+AGG	-	chr4.2:28112768-28112787	MS.gene031526:CDS	30.0%
GGATAAAGTAGATTGGAAAA+GGG	+	chr4.2:28112074-28112093	None:intergenic	30.0%
GTTGTGTTTGTAGAATCATT+AGG	-	chr4.2:28112524-28112543	MS.gene031526:intron	30.0%
TAATGAACCTTCACTTAGAA+AGG	-	chr4.2:28112642-28112661	MS.gene031526:CDS	30.0%
TCAAACTGGATTTGATTCTT+TGG	-	chr4.2:28112735-28112754	MS.gene031526:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	28111576	28112852	28111576	ID=MS.gene031526
chr4.2	mRNA	28111576	28112852	28111576	ID=MS.gene031526.t1;Parent=MS.gene031526
chr4.2	exon	28112624	28112852	28112624	ID=MS.gene031526.t1.exon1;Parent=MS.gene031526.t1
chr4.2	CDS	28112624	28112852	28112624	ID=cds.MS.gene031526.t1;Parent=MS.gene031526.t1
chr4.2	exon	28111576	28112207	28111576	ID=MS.gene031526.t1.exon2;Parent=MS.gene031526.t1
chr4.2	CDS	28111576	28112207	28111576	ID=cds.MS.gene031526.t1;Parent=MS.gene031526.t1

Gene Sequence

>MS.gene031526

ATGCATTACTTTAACCCTTCTTTTAGGACTTCTTCAACTCCTCCAAGGAAATCACCTTTTCTTTTGTCAGAAGGGTCTAATGGTTTTCATGGTGGTGGTGTTCATTCAAGTAATAGGATGTCTCTTGAAACAGATTCTAATGGTTCTTCAACTGTTACTTGTCACAAATGTGGTGAACAGTTTAACAAATGGGAAGCTGCTGAAGCTCACCATCTCTCCAAGCATGCTGGTAAATATTTTTTTATTAAAAATTCTTCTTGGCTTTAGGTTATCCAAATATTTTTCTGACCACAAACTTTTTGGCCATAGTCTTTATCTGATATGCTATAGAATTTTTTTATGGTGGTGTGACAAATCTTACAATAAATCCACACTTTTTGAATTTGGGACTGTAAAGCTGATTTTGCTTTTTCCATGCCTTTTTAATTTAGAATTGTTTGTATTCTCCAACAGATTTTATTTTCAAAATATCTAGGATAAATAAAAGTACTATCTCCCTTTTCCAATCTACTTTATCCTAGTATTTTGAACATTGAACAATAGTGTATCAAAGAACAATAGAGATTTGTTCAAGTTTGTTGTTATGACATTTTGAGTTTCATAAATTTTGAATTTTAAGAGAAAAATTTGTTTTTCCCTTGGCAGTTACTGAACTTTTGGAAGGAGATTCATCAAGGAAAATAGTGGAAATTATATGCAGGACAAGCTGGTTAAAGTCAGAAAACCACTGTGGCAGAATAGAGAGAGTTTTAAAGGTCCACAATATGCAAAAAACTTTAGCTAGATTTGAAGAGTACAGAGAGATGGTAAAAATCAAAGCAAGTAAACTCCAGAAGAAACATCCTAGGCGTCTAGCTGATGGAAATGAACTTTTACGGTTCTATGGAACCACAGTAGCTTGTTCTCTTGGTCTCAATGGCTCTTCAAGTCTTTGTTTATCAGAAAAATGTTGTGTTTGTAGAATCATTAGGAGTGGTTTTTCTGCTAAGAAGGAGTTGAAAGGTGGAATAGGTGTTTTCACAACATCTACAAGTGGAAGGGCTTTTGAATCTATAGAAATTTTTGATAATGAACCTTCACTTAGAAAGGCATTGATAGTATGCAGAGTAATTGCTGGTAGGGTTCATAGGCCACTTGAAAACATTCAAGAAATGGCATCTCAAACTGGATTTGATTCTTTGGCTGGTAAAGTAGGTCTTTATTCAAACATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGTTTTGTGGTAATTTGCAAATCATGA

Protein sequence

>MS.gene031526.t1

MHYFNPSFRTSSTPPRKSPFLLSEGSNGFHGGGVHSSNRMSLETDSNGSSTVTCHKCGEQFNKWEAAEAHHLSKHAVTELLEGDSSRKIVEIICRTSWLKSENHCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRRLADGNELLRFYGTTVACSLGLNGSSSLCLSEKCCVCRIIRSGFSAKKELKGGIGVFTTSTSGRAFESIEIFDNEPSLRKALIVCRVIAGRVHRPLENIQEMASQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKS