Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031622.t1 | XP_003607570.1 | 95 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 4.20E-132 | 480.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031622.t1 | Q9S7Y1 | 45.6 | 171 | 86 | 3 | 68 | 235 | 170 | 336 | 1.4e-30 | 134.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031622.t1 | G7JCJ8 | 95.0 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 3.1e-132 | 480.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene031622.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031622.t1 | MTR_4g079760 | 95.000 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 0.0 | 502 |
| MS.gene031622.t1 | MTR_2g091190 | 73.077 | 260 | 57 | 3 | 1 | 260 | 1 | 247 | 4.50e-114 | 328 |
| MS.gene031622.t1 | MTR_2g015890 | 48.837 | 215 | 105 | 3 | 25 | 238 | 19 | 229 | 6.11e-62 | 196 |
| MS.gene031622.t1 | MTR_2g015890 | 51.266 | 158 | 73 | 2 | 25 | 181 | 19 | 173 | 1.96e-46 | 154 |
| MS.gene031622.t1 | MTR_4g087920 | 40.964 | 249 | 138 | 6 | 6 | 248 | 10 | 255 | 1.16e-42 | 146 |
| MS.gene031622.t1 | MTR_2g015890 | 48.889 | 135 | 65 | 2 | 104 | 238 | 1 | 131 | 2.12e-35 | 124 |
| MS.gene031622.t1 | MTR_1g093750 | 41.667 | 192 | 101 | 2 | 68 | 255 | 154 | 338 | 3.08e-34 | 126 |
| MS.gene031622.t1 | MTR_3g070970 | 38.265 | 196 | 106 | 4 | 64 | 248 | 65 | 256 | 1.45e-33 | 122 |
| MS.gene031622.t1 | MTR_3g096568 | 71.053 | 76 | 22 | 0 | 140 | 215 | 236 | 311 | 3.44e-33 | 123 |
| MS.gene031622.t1 | MTR_5g066080 | 39.634 | 164 | 72 | 3 | 64 | 201 | 28 | 190 | 8.13e-21 | 89.0 |
| MS.gene031622.t1 | MTR_5g032375 | 34.356 | 163 | 90 | 3 | 60 | 209 | 33 | 191 | 2.43e-20 | 86.7 |
| MS.gene031622.t1 | MTR_2g015890 | 53.846 | 78 | 33 | 1 | 104 | 181 | 1 | 75 | 6.82e-20 | 82.8 |
| MS.gene031622.t1 | MTR_8g032210 | 80.357 | 56 | 9 | 2 | 42 | 97 | 41 | 94 | 6.49e-19 | 80.1 |
| MS.gene031622.t1 | MTR_1g018820 | 76.316 | 38 | 9 | 0 | 103 | 140 | 58 | 95 | 1.39e-12 | 62.8 |
| MS.gene031622.t1 | MTR_5g014520 | 27.568 | 185 | 93 | 6 | 47 | 201 | 133 | 306 | 1.17e-11 | 64.3 |
| MS.gene031622.t1 | MTR_8g064700 | 28.814 | 177 | 90 | 5 | 79 | 225 | 248 | 418 | 5.27e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031622.t1 | AT1G68810 | 37.891 | 256 | 134 | 9 | 4 | 249 | 111 | 351 | 4.87e-33 | 124 |
| MS.gene031622.t1 | AT3G56770 | 39.535 | 172 | 95 | 4 | 67 | 236 | 40 | 204 | 1.80e-28 | 108 |
| MS.gene031622.t1 | AT3G25710 | 41.830 | 153 | 88 | 1 | 68 | 220 | 128 | 279 | 7.05e-28 | 109 |
| MS.gene031622.t1 | AT2G40200 | 35.294 | 187 | 111 | 4 | 74 | 253 | 65 | 248 | 3.09e-26 | 103 |
| MS.gene031622.t1 | AT2G41130 | 36.199 | 221 | 126 | 5 | 25 | 236 | 13 | 227 | 3.78e-25 | 100 |
| MS.gene031622.t1 | AT4G38070 | 34.752 | 141 | 85 | 2 | 61 | 201 | 81 | 214 | 3.75e-17 | 79.0 |
| MS.gene031622.t1 | AT4G37850 | 24.865 | 185 | 106 | 5 | 74 | 233 | 151 | 327 | 1.40e-11 | 63.9 |
| MS.gene031622.t1 | AT4G37850 | 24.865 | 185 | 106 | 5 | 74 | 233 | 151 | 327 | 1.40e-11 | 63.9 |
Find 41 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACTTTCTCTTTGGTTT+TGG | 0.189232 | 4.3:+29374907 | MS.gene031622:CDS |
| GATTGGGGTTATGATATATT+TGG | 0.190751 | 4.3:+29374815 | MS.gene031622:CDS |
| GACATTTGAAAGAGCTAAAA+AGG | 0.203088 | 4.3:+29376561 | MS.gene031622:CDS |
| AAAGCAGATATTGCAACTTT+TGG | 0.234706 | 4.3:+29376770 | MS.gene031622:CDS |
| AGTGATGCTTTAATTGAAAA+AGG | 0.247436 | 4.3:-29376674 | None:intergenic |
| TTATGGTTCAACTTTCTCTT+TGG | 0.279286 | 4.3:+29374901 | MS.gene031622:CDS |
| GAAGTAAACAATGAGGTAAT+TGG | 0.285315 | 4.3:+29374872 | MS.gene031622:CDS |
| TGTAGAGGCACCTGTTAAAA+TGG | 0.303301 | 4.3:+29374949 | MS.gene031622:CDS |
| GAATACAGACAGTTTCTTGC+TGG | 0.381216 | 4.3:+29376854 | MS.gene031622:CDS |
| GAGGTAATTGGAAGTGGTTA+TGG | 0.384357 | 4.3:+29374884 | MS.gene031622:CDS |
| CTTATTTCATCATTGTCCTT+TGG | 0.388296 | 4.3:-29376617 | None:intergenic |
| TGTCATTCCAGGTGCTTTGA+AGG | 0.393290 | 4.3:+29375084 | MS.gene031622:CDS |
| GGAGATGCTACTGAGAGAAT+TGG | 0.414764 | 4.3:+29374836 | MS.gene031622:CDS |
| GGAAATGGAAGGTTATGATT+GGG | 0.418530 | 4.3:+29374799 | MS.gene031622:CDS |
| ACACTTCGTTGTGTCATTCC+AGG | 0.420229 | 4.3:+29375073 | MS.gene031622:CDS |
| TGGAAATGGAAGGTTATGAT+TGG | 0.437370 | 4.3:+29374798 | MS.gene031622:CDS |
| GAACAAGAGGGAGGTTGGAA+TGG | 0.468944 | 4.3:+29376647 | MS.gene031622:CDS |
| CAAGCTCTTAAGTCTGTACT+TGG | 0.491840 | 4.3:+29376887 | MS.gene031622:CDS |
| AACAATGAGGTAATTGGAAG+TGG | 0.504571 | 4.3:+29374878 | MS.gene031622:CDS |
| ACCTGTTAAAATGGAAGGAA+AGG | 0.510809 | 4.3:+29374958 | MS.gene031622:CDS |
| TTGAAGAACAAGAGGGAGGT+TGG | 0.512376 | 4.3:+29376642 | MS.gene031622:CDS |
| AATAAGCGTTGAAGAACAAG+AGG | 0.524950 | 4.3:+29376634 | MS.gene031622:CDS |
| CTTATATTAGACAATAAACC+TGG | 0.525756 | 4.3:-29376713 | None:intergenic |
| GAGGCACCTGTTAAAATGGA+AGG | 0.536082 | 4.3:+29374953 | MS.gene031622:CDS |
| CTATGTTGTGAATATCAACC+AGG | 0.546737 | 4.3:+29376695 | MS.gene031622:CDS |
| GAAATGGAAGGTTATGATTG+GGG | 0.551297 | 4.3:+29374800 | MS.gene031622:CDS |
| ATGGACAAAGCATCATTACT+TGG | 0.558251 | 4.3:+29376527 | MS.gene031622:CDS |
| CAGAGAGGAGGAGAAGAGCT+AGG | 0.569549 | 4.3:+29375032 | MS.gene031622:CDS |
| CAAAGCATCATTACTTGGTG+AGG | 0.575226 | 4.3:+29376532 | MS.gene031622:CDS |
| CAAGTACAGACTTAAGAGCT+TGG | 0.585666 | 4.3:-29376886 | None:intergenic |
| ATCATAGTGAGGCAGAGAGG+AGG | 0.598403 | 4.3:+29375020 | MS.gene031622:CDS |
| CCTGTTAAAATGGAAGGAAA+GGG | 0.600881 | 4.3:+29374959 | MS.gene031622:CDS |
| GAACTAACCTTCAAAGCACC+TGG | 0.603639 | 4.3:-29375091 | None:intergenic |
| GGAGAGAGGGGAGCTTGTAG+AGG | 0.606852 | 4.3:+29374934 | MS.gene031622:CDS |
| TACTTGGCTATGGAAATGGA+AGG | 0.619525 | 4.3:+29374788 | None:intergenic |
| TGAAGGTTTAATGATACCAA+AGG | 0.625000 | 4.3:+29376601 | MS.gene031622:CDS |
| AATGAAGCACAAGCATGTGA+AGG | 0.642340 | 4.3:+29376584 | MS.gene031622:CDS |
| AGAATCATAGTGAGGCAGAG+AGG | 0.654591 | 4.3:+29375017 | MS.gene031622:CDS |
| AGCTTTGAAGAATCATAGTG+AGG | 0.662555 | 4.3:+29375009 | MS.gene031622:CDS |
| AGCGTTGAAGAACAAGAGGG+AGG | 0.722418 | 4.3:+29376638 | MS.gene031622:CDS |
| ATAAGCGTTGAAGAACAAGA+GGG | 0.752312 | 4.3:+29376635 | MS.gene031622:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATTATAATTCCTTAAAAA+TGG | + | chr4.3:29376168-29376187 | MS.gene031622:intron | 15.0% |
| !! | TTCTTAATAACCAATTATAT+TGG | + | chr4.3:29375385-29375404 | MS.gene031622:intron | 15.0% |
| !!! | AGAGTATTTAATTGTTTTTA+TGG | + | chr4.3:29376130-29376149 | MS.gene031622:intron | 15.0% |
| !!! | CTTATTTTTATAAGCATTTT+AGG | - | chr4.3:29375633-29375652 | None:intergenic | 15.0% |
| !! | AGAAATATGTCTTCAAATTA+AGG | - | chr4.3:29375955-29375974 | None:intergenic | 20.0% |
| !! | CAATTAAATACTCTTCTAAA+TGG | - | chr4.3:29376124-29376143 | None:intergenic | 20.0% |
| !! | TAAATATTTGTGAAACTGTT+TGG | - | chr4.3:29375702-29375721 | None:intergenic | 20.0% |
| !!! | ATTTCTATGATCCATTTTTA+AGG | - | chr4.3:29376182-29376201 | None:intergenic | 20.0% |
| !!! | CTTCTAAATGGTTTTATTAA+TGG | - | chr4.3:29376112-29376131 | None:intergenic | 20.0% |
| !!! | TAACATGGTACTATTTTATT+GGG | + | chr4.3:29375848-29375867 | MS.gene031622:intron | 20.0% |
| !!! | TATTTTCTTATATTTGAGAC+CGG | + | chr4.3:29375319-29375338 | MS.gene031622:intron | 20.0% |
| !!! | TTTTCTCAATGATTAAAGAA+AGG | - | chr4.3:29375138-29375157 | None:intergenic | 20.0% |
| ! | AGTGATGCTTTAATTGAAAA+AGG | - | chr4.3:29376677-29376696 | None:intergenic | 25.0% |
| ! | ATACTTCACACCAATATAAT+TGG | - | chr4.3:29375398-29375417 | None:intergenic | 25.0% |
| ! | ATCCAACATAGTTATGTATT+GGG | + | chr4.3:29376214-29376233 | MS.gene031622:intron | 25.0% |
| ! | CTACTCAATGAATCTAAAAA+AGG | + | chr4.3:29375294-29375313 | MS.gene031622:intron | 25.0% |
| ! | CTTATATTAGACAATAAACC+TGG | - | chr4.3:29376716-29376735 | None:intergenic | 25.0% |
| ! | TAACTATCTCTCTAACAAAA+AGG | + | chr4.3:29375555-29375574 | MS.gene031622:intron | 25.0% |
| ! | TAGGTTGTCACAATTTATTT+AGG | - | chr4.3:29375763-29375782 | None:intergenic | 25.0% |
| ! | TATCCAACATAGTTATGTAT+TGG | + | chr4.3:29376213-29376232 | MS.gene031622:intron | 25.0% |
| ! | TGGTAAATGATCATATGTAA+GGG | + | chr4.3:29376083-29376102 | MS.gene031622:intron | 25.0% |
| ! | TGTTGAATTTAAGTGTTAAG+TGG | - | chr4.3:29376397-29376416 | None:intergenic | 25.0% |
| !! | GTAACATGGTACTATTTTAT+TGG | + | chr4.3:29375847-29375866 | MS.gene031622:intron | 25.0% |
| !!! | TCTTTTCTTATATTTGAGAC+CGG | - | chr4.3:29375210-29375229 | None:intergenic | 25.0% |
| AAAGTCATTTACTCCATGTT+TGG | + | chr4.3:29375155-29375174 | MS.gene031622:intron | 30.0% | |
| AAGTCACAGTTTGATGTATT+TGG | + | chr4.3:29375896-29375915 | MS.gene031622:intron | 30.0% | |
| ACTGAGAGAATTGGTAAAAA+TGG | + | chr4.3:29374845-29374864 | MS.gene031622:CDS | 30.0% | |
| AGCTAGTTATTTGGTTGATT+AGG | + | chr4.3:29375783-29375802 | MS.gene031622:intron | 30.0% | |
| AGGTAAAATCAAGCTTCAAA+TGG | + | chr4.3:29375823-29375842 | MS.gene031622:intron | 30.0% | |
| ATACAAGATGAGATGGATAA+TGG | - | chr4.3:29376005-29376024 | None:intergenic | 30.0% | |
| ATATTTGTGAAACTGTTTGG+TGG | - | chr4.3:29375699-29375718 | None:intergenic | 30.0% | |
| ATGTCTTCAAATTAAGGCTT+TGG | - | chr4.3:29375949-29375968 | None:intergenic | 30.0% | |
| CATTGAGTAGTTAATGTATG+TGG | - | chr4.3:29375284-29375303 | None:intergenic | 30.0% | |
| CTCGTATATATCTTTCATTC+AGG | + | chr4.3:29376346-29376365 | MS.gene031622:intron | 30.0% | |
| CTGGTAAATGATCATATGTA+AGG | + | chr4.3:29376082-29376101 | MS.gene031622:intron | 30.0% | |
| CTTATTTCATCATTGTCCTT+TGG | - | chr4.3:29376620-29376639 | None:intergenic | 30.0% | |
| GAAGTAAACAATGAGGTAAT+TGG | + | chr4.3:29374872-29374891 | MS.gene031622:CDS | 30.0% | |
| GAATGAAAGATATATACGAG+AGG | - | chr4.3:29376346-29376365 | None:intergenic | 30.0% | |
| GACATTTGAAAGAGCTAAAA+AGG | + | chr4.3:29376561-29376580 | MS.gene031622:CDS | 30.0% | |
| GATTGGGGTTATGATATATT+TGG | + | chr4.3:29374815-29374834 | MS.gene031622:CDS | 30.0% | |
| GCTAGTTATTTGGTTGATTA+GGG | + | chr4.3:29375784-29375803 | MS.gene031622:intron | 30.0% | |
| GGTAAATGATCATATGTAAG+GGG | + | chr4.3:29376084-29376103 | MS.gene031622:intron | 30.0% | |
| TCCAACATAGTTATGTATTG+GGG | + | chr4.3:29376215-29376234 | MS.gene031622:intron | 30.0% | |
| TGAAGGTTTAATGATACCAA+AGG | + | chr4.3:29376601-29376620 | MS.gene031622:CDS | 30.0% | |
| TTAAGTTTAGCGTATAGATG+TGG | - | chr4.3:29376303-29376322 | None:intergenic | 30.0% | |
| TTATGGTTCAACTTTCTCTT+TGG | + | chr4.3:29374901-29374920 | MS.gene031622:CDS | 30.0% | |
| TTCTTCAATACAAGATGAGA+TGG | - | chr4.3:29376012-29376031 | None:intergenic | 30.0% | |
| ! | AAAGCAGATATTGCAACTTT+TGG | + | chr4.3:29376770-29376789 | MS.gene031622:CDS | 30.0% |
| ! | ATCAACCAAATAACTAGCTT+AGG | - | chr4.3:29375782-29375801 | None:intergenic | 30.0% |
| ! | ATCTTGTATTGAAGAAGTGT+TGG | + | chr4.3:29376016-29376035 | MS.gene031622:intron | 30.0% |
| ! | ATTTAGGTTCTATCCAAACA+TGG | - | chr4.3:29375171-29375190 | None:intergenic | 30.0% |
| ! | TGACTAGTTAGATTTCATAG+TGG | - | chr4.3:29375446-29375465 | None:intergenic | 30.0% |
| ! | TTTCCTTTTTATGACACAGA+TGG | + | chr4.3:29376508-29376527 | MS.gene031622:intron | 30.0% |
| !! | TCATAGTGGATATTAGTCAT+CGG | - | chr4.3:29375432-29375451 | None:intergenic | 30.0% |
| !! | TCTTGTATTGAAGAAGTGTT+GGG | + | chr4.3:29376017-29376036 | MS.gene031622:intron | 30.0% |
| !! | TTCAACTTTCTCTTTGGTTT+TGG | + | chr4.3:29374907-29374926 | MS.gene031622:CDS | 30.0% |
| !!! | TGGTTTTGAAGTAAACAATG+AGG | + | chr4.3:29374865-29374884 | MS.gene031622:CDS | 30.0% |
| !!! | TTTCTCTTTGGTTTTGGATA+GGG | + | chr4.3:29374913-29374932 | MS.gene031622:CDS | 30.0% |
| AACAATGAGGTAATTGGAAG+TGG | + | chr4.3:29374878-29374897 | MS.gene031622:CDS | 35.0% | |
| AAGCTTCAAATGGTGTAACA+TGG | + | chr4.3:29375833-29375852 | MS.gene031622:intron | 35.0% | |
| ACCTGTTAAAATGGAAGGAA+AGG | + | chr4.3:29374958-29374977 | MS.gene031622:CDS | 35.0% | |
| ACTACAATAGACCGATGATT+AGG | + | chr4.3:29376258-29376277 | MS.gene031622:intron | 35.0% | |
| AGGGAGTAAGTGCTTAATTT+AGG | - | chr4.3:29375187-29375206 | None:intergenic | 35.0% | |
| ATCCGAGTCTGATATCATAT+AGG | + | chr4.3:29375522-29375541 | MS.gene031622:intron | 35.0% | |
| ATCTAACTAGTCACCTTTAG+TGG | + | chr4.3:29375453-29375472 | MS.gene031622:intron | 35.0% | |
| CACCTATATGATATCAGACT+CGG | - | chr4.3:29375527-29375546 | None:intergenic | 35.0% | |
| CCTGTTAAAATGGAAGGAAA+GGG | + | chr4.3:29374959-29374978 | MS.gene031622:CDS | 35.0% | |
| CTATGTTGTGAATATCAACC+AGG | + | chr4.3:29376695-29376714 | MS.gene031622:CDS | 35.0% | |
| CTCTTAATGGTCCTAATCAT+CGG | - | chr4.3:29376272-29376291 | None:intergenic | 35.0% | |
| GAAATGGAAGGTTATGATTG+GGG | + | chr4.3:29374800-29374819 | MS.gene031622:CDS | 35.0% | |
| GACAACCTAAGCTAGTTATT+TGG | + | chr4.3:29375774-29375793 | MS.gene031622:intron | 35.0% | |
| GATTAGGGTGATGAAAAGAA+GGG | + | chr4.3:29375799-29375818 | MS.gene031622:intron | 35.0% | |
| GGAAAAACTTTGATTAGGAG+GGG | - | chr4.3:29375484-29375503 | None:intergenic | 35.0% | |
| GGAAATGGAAGGTTATGATT+GGG | + | chr4.3:29374799-29374818 | MS.gene031622:CDS | 35.0% | |
| GGAGTATAAACCATACTAGT+TGG | + | chr4.3:29376053-29376072 | MS.gene031622:intron | 35.0% | |
| GGGAAAAACTTTGATTAGGA+GGG | - | chr4.3:29375485-29375504 | None:intergenic | 35.0% | |
| TAAGAGCAAGAAAAAGAAGG+AGG | + | chr4.3:29376936-29376955 | MS.gene031622:CDS | 35.0% | |
| TACTTATCTTATACTCCCTC+CGG | - | chr4.3:29375341-29375360 | None:intergenic | 35.0% | |
| TCCCCAATACATAACTATGT+TGG | - | chr4.3:29376219-29376238 | None:intergenic | 35.0% | |
| TCTAACTAGTCACCTTTAGT+GGG | + | chr4.3:29375454-29375473 | MS.gene031622:intron | 35.0% | |
| TCTCGGGAAAAACTTTGATT+AGG | - | chr4.3:29375489-29375508 | None:intergenic | 35.0% | |
| TGATTAGGGTGATGAAAAGA+AGG | + | chr4.3:29375798-29375817 | MS.gene031622:intron | 35.0% | |
| TGCTAAGAGCAAGAAAAAGA+AGG | + | chr4.3:29376933-29376952 | MS.gene031622:CDS | 35.0% | |
| TGGAAATGGAAGGTTATGAT+TGG | + | chr4.3:29374798-29374817 | MS.gene031622:CDS | 35.0% | |
| TGTCCATCTGTGTCATAAAA+AGG | - | chr4.3:29376514-29376533 | None:intergenic | 35.0% | |
| ! | AAACTGTTTGGTGGAACTTA+TGG | - | chr4.3:29375690-29375709 | None:intergenic | 35.0% |
| ! | ATGGACAAAGCATCATTACT+TGG | + | chr4.3:29376527-29376546 | MS.gene031622:CDS | 35.0% |
| ! | TGGTAGATTTTCTGTTTCAC+AGG | + | chr4.3:29376907-29376926 | MS.gene031622:CDS | 35.0% |
| ! | TTCTTATATTTGAGACCGGA+GGG | + | chr4.3:29375323-29375342 | MS.gene031622:intron | 35.0% |
| ! | TTCTTATATTTGAGACCGGA+GGG | - | chr4.3:29375342-29375323 | None:intergenic | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | + | chr4.3:29375322-29375341 | MS.gene031622:intron | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | - | chr4.3:29375341-29375322 | None:intergenic | 35.0% |
| !! | AATAAGCGTTGAAGAACAAG+AGG | + | chr4.3:29376634-29376653 | MS.gene031622:CDS | 35.0% |
| !! | AGCTTTGAAGAATCATAGTG+AGG | + | chr4.3:29375009-29375028 | MS.gene031622:CDS | 35.0% |
| !! | ATAAGCGTTGAAGAACAAGA+GGG | + | chr4.3:29376635-29376654 | MS.gene031622:CDS | 35.0% |
| !!! | CTTTCTCTTTGGTTTTGGAT+AGG | + | chr4.3:29374912-29374931 | MS.gene031622:CDS | 35.0% |
| AATGAAGCACAAGCATGTGA+AGG | + | chr4.3:29376584-29376603 | MS.gene031622:CDS | 40.0% | |
| AATTAAGCACTTACTCCCTC+CGG | + | chr4.3:29375188-29375207 | MS.gene031622:intron | 40.0% | |
| CAAGCTCTTAAGTCTGTACT+TGG | + | chr4.3:29376887-29376906 | MS.gene031622:CDS | 40.0% | |
| CAAGTACAGACTTAAGAGCT+TGG | - | chr4.3:29376889-29376908 | None:intergenic | 40.0% | |
| CCAGTTACTACCAACTAGTA+TGG | - | chr4.3:29376066-29376085 | None:intergenic | 40.0% | |
| CGGGAAAAACTTTGATTAGG+AGG | - | chr4.3:29375486-29375505 | None:intergenic | 40.0% | |
| CTTGTGAAGCTATGCTTACA+AGG | - | chr4.3:29375879-29375898 | None:intergenic | 40.0% | |
| GAATACAGACAGTTTCTTGC+TGG | + | chr4.3:29376854-29376873 | MS.gene031622:CDS | 40.0% | |
| GAGGTAATTGGAAGTGGTTA+TGG | + | chr4.3:29374884-29374903 | MS.gene031622:CDS | 40.0% | |
| GATCCTTTAAGCAAAGTCTC+GGG | - | chr4.3:29375505-29375524 | None:intergenic | 40.0% | |
| GGATCCTTTAAGCAAAGTCT+CGG | - | chr4.3:29375506-29375525 | None:intergenic | 40.0% | |
| GTGTTGGGAGCTTGAAAATT+TGG | + | chr4.3:29376032-29376051 | MS.gene031622:intron | 40.0% | |
| TAGTTATGTATTGGGGAGTC+CGG | + | chr4.3:29376222-29376241 | MS.gene031622:intron | 40.0% | |
| TTTCCCGAGACTTTGCTTAA+AGG | + | chr4.3:29375499-29375518 | MS.gene031622:intron | 40.0% | |
| ! | CAAAGCATCATTACTTGGTG+AGG | + | chr4.3:29376532-29376551 | MS.gene031622:CDS | 40.0% |
| ! | GCAGATATTGCAACTTTTGG+AGG | + | chr4.3:29376773-29376792 | MS.gene031622:CDS | 40.0% |
| !! | CCATACTAGTTGGTAGTAAC+TGG | + | chr4.3:29376063-29376082 | MS.gene031622:intron | 40.0% |
| !! | CCCTTTCCTTCCATTTTAAC+AGG | - | chr4.3:29374962-29374981 | None:intergenic | 40.0% |
| !! | TGTAGAGGCACCTGTTAAAA+TGG | + | chr4.3:29374949-29374968 | MS.gene031622:CDS | 40.0% |
| !! | TGTGGTGTTGTGTCTCTTAA+TGG | - | chr4.3:29376285-29376304 | None:intergenic | 40.0% |
| AGAATCATAGTGAGGCAGAG+AGG | + | chr4.3:29375017-29375036 | MS.gene031622:CDS | 45.0% | |
| AGGGTGATGAAAAGAAGGGT+AGG | + | chr4.3:29375803-29375822 | MS.gene031622:intron | 45.0% | |
| AGTTATGTATTGGGGAGTCC+GGG | + | chr4.3:29376223-29376242 | MS.gene031622:intron | 45.0% | |
| GATATTAGTCATCGGCAACG+CGG | - | chr4.3:29375424-29375443 | None:intergenic | 45.0% | |
| GGAGATGCTACTGAGAGAAT+TGG | + | chr4.3:29374836-29374855 | MS.gene031622:CDS | 45.0% | |
| TGTAGTTTCTGACACTCTCC+CGG | - | chr4.3:29376244-29376263 | None:intergenic | 45.0% | |
| TGTCATTCCAGGTGCTTTGA+AGG | + | chr4.3:29375084-29375103 | MS.gene031622:CDS | 45.0% | |
| TTGAAGAACAAGAGGGAGGT+TGG | + | chr4.3:29376642-29376661 | MS.gene031622:CDS | 45.0% | |
| ! | ACACTTCGTTGTGTCATTCC+AGG | + | chr4.3:29375073-29375092 | MS.gene031622:CDS | 45.0% |
| ! | GAACTAACCTTCAAAGCACC+TGG | - | chr4.3:29375094-29375113 | None:intergenic | 45.0% |
| ! | GAGGCACCTGTTAAAATGGA+AGG | + | chr4.3:29374953-29374972 | MS.gene031622:CDS | 45.0% |
| !! | TAAGGCTTTGGAGAAGATGC+AGG | - | chr4.3:29375937-29375956 | None:intergenic | 45.0% |
| !!! | TGGTTTTGGATAGGGAGAGA+GGG | + | chr4.3:29374921-29374940 | MS.gene031622:CDS | 45.0% |
| !!! | TTGGTTTTGGATAGGGAGAG+AGG | + | chr4.3:29374920-29374939 | MS.gene031622:CDS | 45.0% |
| ATCATAGTGAGGCAGAGAGG+AGG | + | chr4.3:29375020-29375039 | MS.gene031622:CDS | 50.0% | |
| GAACAAGAGGGAGGTTGGAA+TGG | + | chr4.3:29376647-29376666 | MS.gene031622:CDS | 50.0% | |
| GGAGAAGATGCAGGCATACA+TGG | - | chr4.3:29375928-29375947 | None:intergenic | 50.0% | |
| ! | AGCGTTGAAGAACAAGAGGG+AGG | + | chr4.3:29376638-29376657 | MS.gene031622:CDS | 50.0% |
| !!! | GGTTTTGGATAGGGAGAGAG+GGG | + | chr4.3:29374922-29374941 | MS.gene031622:CDS | 50.0% |
| ATTAGTCATCGGCAACGCGG+TGG | - | chr4.3:29375421-29375440 | None:intergenic | 55.0% | |
| CAGAGAGGAGGAGAAGAGCT+AGG | + | chr4.3:29375032-29375051 | MS.gene031622:CDS | 55.0% | |
| AGGAGGGGTGAGCCCACTAA+AGG | - | chr4.3:29375469-29375488 | None:intergenic | 60.0% | |
| GGAGAGAGGGGAGCTTGTAG+AGG | + | chr4.3:29374934-29374953 | MS.gene031622:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 29374797 | 29377000 | 29374797 | ID=MS.gene031622 |
| chr4.3 | mRNA | 29374797 | 29377000 | 29374797 | ID=MS.gene031622.t1;Parent=MS.gene031622 |
| chr4.3 | exon | 29374797 | 29375105 | 29374797 | ID=MS.gene031622.t1.exon1;Parent=MS.gene031622.t1 |
| chr4.3 | CDS | 29374797 | 29375105 | 29374797 | ID=cds.MS.gene031622.t1;Parent=MS.gene031622.t1 |
| chr4.3 | exon | 29376527 | 29377000 | 29376527 | ID=MS.gene031622.t1.exon2;Parent=MS.gene031622.t1 |
| chr4.3 | CDS | 29376527 | 29377000 | 29376527 | ID=cds.MS.gene031622.t1;Parent=MS.gene031622.t1 |
| Gene Sequence |
| Protein sequence |
