Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031628.t1 | XP_003607555.1 | 97.6 | 336 | 7 | 1 | 1 | 336 | 1 | 335 | 1.20E-182 | 649 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031628.t1 | Q9MAH8 | 35.9 | 365 | 187 | 12 | 5 | 332 | 31 | 385 | 3.1e-35 | 150.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031628.t1 | G7ZZY9 | 97.6 | 336 | 7 | 1 | 1 | 336 | 1 | 335 | 8.4e-183 | 649.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene031628.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031628.t1 | MTR_4g079580 | 97.619 | 336 | 7 | 1 | 1 | 336 | 1 | 335 | 0.0 | 674 |
| MS.gene031628.t1 | MTR_2g090960 | 53.488 | 344 | 120 | 13 | 1 | 329 | 3 | 321 | 8.49e-105 | 310 |
| MS.gene031628.t1 | MTR_8g463380 | 36.318 | 402 | 176 | 10 | 3 | 332 | 34 | 427 | 4.53e-53 | 181 |
| MS.gene031628.t1 | MTR_2g078200 | 79.762 | 84 | 17 | 0 | 6 | 89 | 3 | 86 | 9.15e-44 | 152 |
| MS.gene031628.t1 | MTR_7g015010 | 59.740 | 77 | 31 | 0 | 17 | 93 | 51 | 127 | 1.40e-24 | 102 |
| MS.gene031628.t1 | MTR_6g015350 | 61.250 | 80 | 28 | 1 | 17 | 96 | 43 | 119 | 6.23e-22 | 95.1 |
| MS.gene031628.t1 | MTR_4g109660 | 57.971 | 69 | 29 | 0 | 16 | 84 | 49 | 117 | 4.34e-20 | 89.4 |
| MS.gene031628.t1 | MTR_3g026050 | 30.870 | 230 | 114 | 7 | 17 | 205 | 51 | 276 | 7.73e-20 | 89.7 |
| MS.gene031628.t1 | MTR_6g017055 | 48.148 | 81 | 41 | 1 | 3 | 83 | 107 | 186 | 1.28e-17 | 83.6 |
| MS.gene031628.t1 | MTR_1g103380 | 55.000 | 60 | 27 | 0 | 23 | 82 | 201 | 260 | 3.53e-16 | 79.7 |
| MS.gene031628.t1 | MTR_4g111935 | 46.250 | 80 | 42 | 1 | 3 | 82 | 113 | 191 | 1.82e-15 | 77.0 |
| MS.gene031628.t1 | MTR_7g018500 | 53.448 | 58 | 27 | 0 | 25 | 82 | 122 | 179 | 1.73e-14 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031628.t1 | AT2G31070 | 36.053 | 380 | 137 | 15 | 5 | 321 | 11 | 347 | 5.75e-49 | 168 |
| MS.gene031628.t1 | AT1G53230 | 37.432 | 366 | 180 | 14 | 5 | 332 | 31 | 385 | 6.65e-49 | 169 |
| MS.gene031628.t1 | AT1G53230 | 37.432 | 366 | 180 | 14 | 5 | 332 | 31 | 385 | 6.65e-49 | 169 |
| MS.gene031628.t1 | AT3G15030 | 34.085 | 399 | 181 | 12 | 5 | 332 | 27 | 414 | 2.56e-48 | 167 |
| MS.gene031628.t1 | AT3G15030 | 34.085 | 399 | 181 | 12 | 5 | 332 | 27 | 414 | 2.56e-48 | 167 |
| MS.gene031628.t1 | AT3G15030 | 34.085 | 399 | 181 | 12 | 5 | 332 | 27 | 414 | 2.56e-48 | 167 |
| MS.gene031628.t1 | AT3G15030 | 34.085 | 399 | 181 | 12 | 5 | 332 | 27 | 414 | 2.56e-48 | 167 |
| MS.gene031628.t1 | AT4G18390 | 59.184 | 98 | 29 | 3 | 17 | 109 | 36 | 127 | 3.30e-26 | 107 |
| MS.gene031628.t1 | AT4G18390 | 59.184 | 98 | 29 | 3 | 17 | 109 | 36 | 127 | 3.30e-26 | 107 |
| MS.gene031628.t1 | AT1G30210 | 65.217 | 69 | 24 | 0 | 16 | 84 | 43 | 111 | 9.56e-23 | 97.1 |
| MS.gene031628.t1 | AT1G30210 | 65.217 | 69 | 24 | 0 | 16 | 84 | 43 | 111 | 9.56e-23 | 97.1 |
| MS.gene031628.t1 | AT3G02150 | 63.768 | 69 | 25 | 0 | 17 | 85 | 68 | 136 | 4.83e-22 | 94.4 |
| MS.gene031628.t1 | AT3G02150 | 63.768 | 69 | 25 | 0 | 17 | 85 | 68 | 136 | 6.76e-22 | 95.1 |
| MS.gene031628.t1 | AT5G60970 | 55.696 | 79 | 31 | 2 | 17 | 94 | 57 | 132 | 4.25e-20 | 90.1 |
| MS.gene031628.t1 | AT5G08070 | 51.220 | 82 | 37 | 1 | 17 | 95 | 27 | 108 | 6.76e-20 | 87.8 |
| MS.gene031628.t1 | AT5G08070 | 51.220 | 82 | 37 | 1 | 17 | 95 | 27 | 108 | 6.76e-20 | 87.8 |
| MS.gene031628.t1 | AT1G68800 | 53.846 | 65 | 30 | 0 | 19 | 83 | 108 | 172 | 1.01e-18 | 86.3 |
| MS.gene031628.t1 | AT1G68800 | 53.846 | 65 | 30 | 0 | 19 | 83 | 108 | 172 | 1.08e-18 | 86.3 |
| MS.gene031628.t1 | AT1G67260 | 50.000 | 66 | 33 | 0 | 18 | 83 | 82 | 147 | 2.05e-17 | 82.4 |
| MS.gene031628.t1 | AT1G67260 | 50.000 | 66 | 33 | 0 | 18 | 83 | 82 | 147 | 2.05e-17 | 82.4 |
| MS.gene031628.t1 | AT1G67260 | 50.000 | 66 | 33 | 0 | 18 | 83 | 82 | 147 | 2.36e-17 | 82.4 |
| MS.gene031628.t1 | AT3G18550 | 50.769 | 65 | 32 | 0 | 18 | 82 | 143 | 207 | 6.49e-15 | 75.5 |
| MS.gene031628.t1 | AT3G18550 | 50.769 | 65 | 32 | 0 | 18 | 82 | 143 | 207 | 6.91e-15 | 75.5 |
| MS.gene031628.t1 | AT3G18550 | 50.769 | 65 | 32 | 0 | 18 | 82 | 143 | 207 | 6.91e-15 | 75.5 |
| MS.gene031628.t1 | AT3G18550 | 50.769 | 65 | 32 | 0 | 18 | 82 | 143 | 207 | 7.01e-15 | 75.5 |
Find 73 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCATCAAGCTTCAATCTT+TGG | 0.193207 | 4.3:+29517043 | MS.gene031628:CDS |
| AATTCTCAATTCTATGATAT+TGG | 0.253929 | 4.3:-29516823 | None:intergenic |
| GTGAAATGAAAGTTGAATTA+TGG | 0.327131 | 4.3:-29516583 | None:intergenic |
| TCTCCACCTTGAACTGTATC+AGG | 0.328569 | 4.3:-29517106 | None:intergenic |
| TATAAAGAAAGTTGGATTCA+TGG | 0.328597 | 4.3:+29516871 | MS.gene031628:CDS |
| GTAAACTCACAGCCATTTCT+AGG | 0.333729 | 4.3:+29516893 | MS.gene031628:CDS |
| AACTTTCTTTATATAATCAT+TGG | 0.342032 | 4.3:-29516861 | None:intergenic |
| GAATGAAACCATTGTGATCT+TGG | 0.357259 | 4.3:-29516721 | None:intergenic |
| AACTTTGCTCAGTTGTGATT+AGG | 0.360426 | 4.3:-29517169 | None:intergenic |
| TTCGACTGAAGGGCCTCGTT+TGG | 0.373869 | 4.3:-29516941 | None:intergenic |
| GAAGTAGGGATGAGGAGTAC+TGG | 0.386702 | 4.3:+29516164 | None:intergenic |
| GTAGTTGGAAAGAAAGGTAT+AGG | 0.386721 | 4.3:-29516626 | None:intergenic |
| CCATTTCTAGGCCAAGGTTC+AGG | 0.387585 | 4.3:+29516905 | MS.gene031628:CDS |
| TGCATTCCTGATACAGTTCA+AGG | 0.398078 | 4.3:+29517100 | MS.gene031628:CDS |
| AGCCAATCCACTGCTTTGCT+TGG | 0.398100 | 4.3:-29516359 | None:intergenic |
| GGAGAGATAGTTCAGGTAGA+AGG | 0.398765 | 4.3:+29516191 | MS.gene031628:CDS |
| TAGAAGGAGGACACATAGTT+CGG | 0.402620 | 4.3:+29516207 | MS.gene031628:CDS |
| GGAAGCAGGTTTGTTTCTGA+TGG | 0.414475 | 4.3:+29517064 | MS.gene031628:CDS |
| TTTGTTTCTGATGGATTAGC+AGG | 0.421645 | 4.3:+29517073 | MS.gene031628:CDS |
| AATATCATAGAATTGAGAAT+TGG | 0.422183 | 4.3:+29516825 | MS.gene031628:CDS |
| GAAGAGGTAGTTGGAAAGAA+AGG | 0.436289 | 4.3:-29516632 | None:intergenic |
| AATGATTATATAAAGAAAGT+TGG | 0.442550 | 4.3:+29516863 | MS.gene031628:CDS |
| AGGGTAGTTCTGAAAATTGA+TGG | 0.446306 | 4.3:-29516666 | None:intergenic |
| AAGCTTCAATCTTTGGAAGC+AGG | 0.461093 | 4.3:+29517050 | MS.gene031628:CDS |
| TGGAGGAGGAGAGATAGTTC+AGG | 0.462988 | 4.3:+29516184 | MS.gene031628:CDS |
| CAAAAGGTCCTCGTGATCGC+AGG | 0.468784 | 4.3:+29516270 | MS.gene031628:CDS |
| ATCACAATGGTTTCATTCCA+TGG | 0.469357 | 4.3:+29516726 | MS.gene031628:CDS |
| GAAGAAGTAGAAGAGGTAGT+TGG | 0.473749 | 4.3:-29516641 | None:intergenic |
| GGAGAAACATCAGAATCTAA+TGG | 0.478617 | 4.3:+29516515 | MS.gene031628:CDS |
| CCTGAACCTTGGCCTAGAAA+TGG | 0.484381 | 4.3:-29516905 | None:intergenic |
| AGAAGGAGGACACATAGTTC+GGG | 0.484476 | 4.3:+29516208 | MS.gene031628:CDS |
| AGCAAGGTTTACACATCAAA+AGG | 0.489089 | 4.3:+29516254 | MS.gene031628:CDS |
| AACTCAAGTGGAATGGTTGT+TGG | 0.490485 | 4.3:+29516494 | MS.gene031628:CDS |
| GATGGATGAAGAAGTAGAAG+AGG | 0.499986 | 4.3:-29516648 | None:intergenic |
| CTTCAGAGGTTCATCATCAC+AGG | 0.503181 | 4.3:+29517011 | MS.gene031628:CDS |
| GGATCAGTTTCAACATTATG+TGG | 0.505424 | 4.3:-29516605 | None:intergenic |
| AAGCTCCGCGAGCTTGTCAA+TGG | 0.510986 | 4.3:-29516402 | None:intergenic |
| GGGATGAGGAGTACTGGAGG+AGG | 0.516880 | 4.3:+29516170 | None:intergenic |
| TCCTATGGATTCTTCTTCAG+AGG | 0.520790 | 4.3:+29516997 | MS.gene031628:CDS |
| GACCAAGCAAAGCAGTGGAT+TGG | 0.524360 | 4.3:+29516357 | MS.gene031628:CDS |
| AGGAATGAAGAGAGAGGCCA+AGG | 0.528264 | 4.3:-29516697 | None:intergenic |
| CTTCCTCCATGGCATCCAAT+CGG | 0.535397 | 4.3:+29516422 | MS.gene031628:CDS |
| GAAACCATTGTGATCTTGGA+AGG | 0.539513 | 4.3:-29516717 | None:intergenic |
| AATGTAGTTGCAAACTCAAG+TGG | 0.546614 | 4.3:+29516482 | MS.gene031628:CDS |
| AGACAATTGAGTGAGAATCA+AGG | 0.556151 | 4.3:+29516557 | MS.gene031628:CDS |
| GTAGGGATGAGGAGTACTGG+AGG | 0.556752 | 4.3:+29516167 | None:intergenic |
| TCACAGCCATTTCTAGGCCA+AGG | 0.557024 | 4.3:+29516899 | MS.gene031628:CDS |
| AGCTCGCGGAGCTTCCTCCA+TGG | 0.559593 | 4.3:+29516411 | MS.gene031628:CDS |
| ACAGTTCAAGGTGGAGAAGA+GGG | 0.562685 | 4.3:+29517112 | MS.gene031628:CDS |
| AACATGGAATGAGATTCCTA+TGG | 0.565709 | 4.3:+29516982 | MS.gene031628:CDS |
| TTTCGCATTCTGTTAGAACA+TGG | 0.574908 | 4.3:+29516966 | MS.gene031628:CDS |
| ACATTCTGAACTTCTTCTAG+AGG | 0.582575 | 4.3:-29516464 | None:intergenic |
| AGTGGATTGGCTCATCAAGA+AGG | 0.590173 | 4.3:+29516370 | MS.gene031628:CDS |
| TACAGTTCAAGGTGGAGAAG+AGG | 0.595152 | 4.3:+29517111 | MS.gene031628:CDS |
| AAAAGGTCCTCGTGATCGCA+GGG | 0.597089 | 4.3:+29516271 | MS.gene031628:CDS |
| AACTACCCTTCTGAAAACCT+TGG | 0.597609 | 4.3:+29516680 | MS.gene031628:CDS |
| CATACTTGTTGTGATTGCCA+TGG | 0.603271 | 4.3:-29516743 | None:intergenic |
| TGCTTGGTCTGTCATAGCCG+AGG | 0.612632 | 4.3:-29516343 | None:intergenic |
| TACGATGTTCAAGATCGCCT+CGG | 0.620277 | 4.3:+29516326 | MS.gene031628:CDS |
| CATTCCTTCCAAGATCACAA+TGG | 0.621086 | 4.3:+29516713 | MS.gene031628:CDS |
| AGTCGAACCCTGCGATCACG+AGG | 0.621133 | 4.3:-29516278 | None:intergenic |
| AGTATTCTGAACCTGAACCT+TGG | 0.621967 | 4.3:-29516916 | None:intergenic |
| GAGATAGTTCAGGTAGAAGG+AGG | 0.622890 | 4.3:+29516194 | MS.gene031628:CDS |
| TTGAACATCGTAGAATTCGA+TGG | 0.627660 | 4.3:-29516315 | None:intergenic |
| TGACAGACCAAGCAAAGCAG+TGG | 0.629311 | 4.3:+29516352 | MS.gene031628:CDS |
| TTGTGATTAGGAGAAGAAGA+AGG | 0.632468 | 4.3:-29517157 | None:intergenic |
| CTTGGAAGGAATGAAGAGAG+AGG | 0.651388 | 4.3:-29516703 | None:intergenic |
| TCGCCGATTGGATGCCATGG+AGG | 0.652394 | 4.3:-29516425 | None:intergenic |
| ACCTCTGAAGAAGAATCCAT+AGG | 0.653923 | 4.3:-29516998 | None:intergenic |
| GTCTTCCATTGACAAGCTCG+CGG | 0.658985 | 4.3:+29516397 | MS.gene031628:CDS |
| AGTTGCAAACTCAAGTGGAA+TGG | 0.665604 | 4.3:+29516487 | MS.gene031628:CDS |
| TTCAGAATACTCTCCAAACG+AGG | 0.687891 | 4.3:+29516928 | MS.gene031628:CDS |
| ATTCCTGATACAGTTCAAGG+TGG | 0.775251 | 4.3:+29517103 | MS.gene031628:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTTTCTTTATATAATCAT+TGG | - | chr4.3:29516864-29516883 | None:intergenic | 15.0% |
| !! | AATGATTATATAAAGAAAGT+TGG | + | chr4.3:29516863-29516882 | MS.gene031628:CDS | 15.0% |
| !! | AATATCATAGAATTGAGAAT+TGG | + | chr4.3:29516825-29516844 | MS.gene031628:CDS | 20.0% |
| !! | AATTCTCAATTCTATGATAT+TGG | - | chr4.3:29516826-29516845 | None:intergenic | 20.0% |
| ! | GTGAAATGAAAGTTGAATTA+TGG | - | chr4.3:29516586-29516605 | None:intergenic | 25.0% |
| ! | TATAAAGAAAGTTGGATTCA+TGG | + | chr4.3:29516871-29516890 | MS.gene031628:CDS | 25.0% |
| !! | ATTGGTTCTCAAAAAAAGTT+TGG | - | chr4.3:29516808-29516827 | None:intergenic | 25.0% |
| !!! | AAAAAGTTTGGTTTTGGTTT+TGG | - | chr4.3:29516796-29516815 | None:intergenic | 25.0% |
| !!! | TCTCAAAAAAAGTTTGGTTT+TGG | - | chr4.3:29516802-29516821 | None:intergenic | 25.0% |
| !! | GGTTTTCATTTGAAGTTTCA+TGG | - | chr4.3:29516775-29516794 | None:intergenic | 30.0% |
| AACATGGAATGAGATTCCTA+TGG | + | chr4.3:29516982-29517001 | MS.gene031628:CDS | 35.0% | |
| AATGCGAAAAATTCGACTGA+AGG | - | chr4.3:29516955-29516974 | None:intergenic | 35.0% | |
| AATGTAGTTGCAAACTCAAG+TGG | + | chr4.3:29516482-29516501 | MS.gene031628:CDS | 35.0% | |
| ACATTCTGAACTTCTTCTAG+AGG | - | chr4.3:29516467-29516486 | None:intergenic | 35.0% | |
| AGACAATTGAGTGAGAATCA+AGG | + | chr4.3:29516557-29516576 | MS.gene031628:CDS | 35.0% | |
| AGCAAGGTTTACACATCAAA+AGG | + | chr4.3:29516254-29516273 | MS.gene031628:CDS | 35.0% | |
| ATCACAATGGTTTCATTCCA+TGG | + | chr4.3:29516726-29516745 | MS.gene031628:CDS | 35.0% | |
| ATGCGAAAAATTCGACTGAA+GGG | - | chr4.3:29516954-29516973 | None:intergenic | 35.0% | |
| GAATGAAACCATTGTGATCT+TGG | - | chr4.3:29516724-29516743 | None:intergenic | 35.0% | |
| GGAGAAACATCAGAATCTAA+TGG | + | chr4.3:29516515-29516534 | MS.gene031628:CDS | 35.0% | |
| GGATCAGTTTCAACATTATG+TGG | - | chr4.3:29516608-29516627 | None:intergenic | 35.0% | |
| GTTCATCAAGCTTCAATCTT+TGG | + | chr4.3:29517043-29517062 | MS.gene031628:CDS | 35.0% | |
| TAAAAAAGATCGTCACAGCA+AGG | + | chr4.3:29516238-29516257 | MS.gene031628:CDS | 35.0% | |
| TTGAACATCGTAGAATTCGA+TGG | - | chr4.3:29516318-29516337 | None:intergenic | 35.0% | |
| TTGTGATTAGGAGAAGAAGA+AGG | - | chr4.3:29517160-29517179 | None:intergenic | 35.0% | |
| TTTCGCATTCTGTTAGAACA+TGG | + | chr4.3:29516966-29516985 | MS.gene031628:CDS | 35.0% | |
| ! | GTAGTTGGAAAGAAAGGTAT+AGG | - | chr4.3:29516629-29516648 | None:intergenic | 35.0% |
| !! | AGGGTAGTTCTGAAAATTGA+TGG | - | chr4.3:29516669-29516688 | None:intergenic | 35.0% |
| !! | TTTGTTTCTGATGGATTAGC+AGG | + | chr4.3:29517073-29517092 | MS.gene031628:CDS | 35.0% |
| AACTCAAGTGGAATGGTTGT+TGG | + | chr4.3:29516494-29516513 | MS.gene031628:CDS | 40.0% | |
| AGTATTCTGAACCTGAACCT+TGG | - | chr4.3:29516919-29516938 | None:intergenic | 40.0% | |
| AGTTGCAAACTCAAGTGGAA+TGG | + | chr4.3:29516487-29516506 | MS.gene031628:CDS | 40.0% | |
| ATTCCTGATACAGTTCAAGG+TGG | + | chr4.3:29517103-29517122 | MS.gene031628:CDS | 40.0% | |
| CATTCCTTCCAAGATCACAA+TGG | + | chr4.3:29516713-29516732 | MS.gene031628:CDS | 40.0% | |
| GAAACCATTGTGATCTTGGA+AGG | - | chr4.3:29516720-29516739 | None:intergenic | 40.0% | |
| GAAGAAGTAGAAGAGGTAGT+TGG | - | chr4.3:29516644-29516663 | None:intergenic | 40.0% | |
| GAAGAGGTAGTTGGAAAGAA+AGG | - | chr4.3:29516635-29516654 | None:intergenic | 40.0% | |
| GATGGATGAAGAAGTAGAAG+AGG | - | chr4.3:29516651-29516670 | None:intergenic | 40.0% | |
| GTAAACTCACAGCCATTTCT+AGG | + | chr4.3:29516893-29516912 | MS.gene031628:CDS | 40.0% | |
| TAGAAGGAGGACACATAGTT+CGG | + | chr4.3:29516207-29516226 | MS.gene031628:CDS | 40.0% | |
| TCCTATGGATTCTTCTTCAG+AGG | + | chr4.3:29516997-29517016 | MS.gene031628:CDS | 40.0% | |
| TGCATTCCTGATACAGTTCA+AGG | + | chr4.3:29517100-29517119 | MS.gene031628:CDS | 40.0% | |
| TTCAGAATACTCTCCAAACG+AGG | + | chr4.3:29516928-29516947 | MS.gene031628:CDS | 40.0% | |
| ! | AACTACCCTTCTGAAAACCT+TGG | + | chr4.3:29516680-29516699 | MS.gene031628:CDS | 40.0% |
| ! | AAGCTTCAATCTTTGGAAGC+AGG | + | chr4.3:29517050-29517069 | MS.gene031628:CDS | 40.0% |
| ! | ACCTCTGAAGAAGAATCCAT+AGG | - | chr4.3:29517001-29517020 | None:intergenic | 40.0% |
| !! | AGAGTTTGATTTTCGCCGAT+TGG | - | chr4.3:29516440-29516459 | None:intergenic | 40.0% |
| !! | CATACTTGTTGTGATTGCCA+TGG | - | chr4.3:29516746-29516765 | None:intergenic | 40.0% |
| !!! | GCTGTGACGATCTTTTTTAC+TGG | - | chr4.3:29516237-29516256 | None:intergenic | 40.0% |
| !!! | GTGACGATCTTTTTTACTGG+TGG | - | chr4.3:29516234-29516253 | None:intergenic | 40.0% |
| ACAGTTCAAGGTGGAGAAGA+GGG | + | chr4.3:29517112-29517131 | MS.gene031628:CDS | 45.0% | |
| AGAAGGAGGACACATAGTTC+GGG | + | chr4.3:29516208-29516227 | MS.gene031628:CDS | 45.0% | |
| CTTCAGAGGTTCATCATCAC+AGG | + | chr4.3:29517011-29517030 | MS.gene031628:CDS | 45.0% | |
| CTTGGAAGGAATGAAGAGAG+AGG | - | chr4.3:29516706-29516725 | None:intergenic | 45.0% | |
| GAGATAGTTCAGGTAGAAGG+AGG | + | chr4.3:29516194-29516213 | MS.gene031628:CDS | 45.0% | |
| GGAGAGATAGTTCAGGTAGA+AGG | + | chr4.3:29516191-29516210 | MS.gene031628:CDS | 45.0% | |
| TACAGTTCAAGGTGGAGAAG+AGG | + | chr4.3:29517111-29517130 | MS.gene031628:CDS | 45.0% | |
| TACGATGTTCAAGATCGCCT+CGG | + | chr4.3:29516326-29516345 | MS.gene031628:CDS | 45.0% | |
| TCTCCACCTTGAACTGTATC+AGG | - | chr4.3:29517109-29517128 | None:intergenic | 45.0% | |
| ! | AGAGGCCAAGGTTTTCAGAA+GGG | - | chr4.3:29516688-29516707 | None:intergenic | 45.0% |
| !! | AGTGGATTGGCTCATCAAGA+AGG | + | chr4.3:29516370-29516389 | MS.gene031628:CDS | 45.0% |
| !! | GGAAGCAGGTTTGTTTCTGA+TGG | + | chr4.3:29517064-29517083 | MS.gene031628:CDS | 45.0% |
| AAAAGGTCCTCGTGATCGCA+GGG | + | chr4.3:29516271-29516290 | MS.gene031628:CDS | 50.0% | |
| AGCCAATCCACTGCTTTGCT+TGG | - | chr4.3:29516362-29516381 | None:intergenic | 50.0% | |
| AGGAATGAAGAGAGAGGCCA+AGG | - | chr4.3:29516700-29516719 | None:intergenic | 50.0% | |
| CCTGAACCTTGGCCTAGAAA+TGG | - | chr4.3:29516908-29516927 | None:intergenic | 50.0% | |
| CTTCCTCCATGGCATCCAAT+CGG | + | chr4.3:29516422-29516441 | MS.gene031628:CDS | 50.0% | |
| GACCAAGCAAAGCAGTGGAT+TGG | + | chr4.3:29516357-29516376 | MS.gene031628:CDS | 50.0% | |
| GTCTTCCATTGACAAGCTCG+CGG | + | chr4.3:29516397-29516416 | MS.gene031628:CDS | 50.0% | |
| TGACAGACCAAGCAAAGCAG+TGG | + | chr4.3:29516352-29516371 | MS.gene031628:CDS | 50.0% | |
| TGGAGGAGGAGAGATAGTTC+AGG | + | chr4.3:29516184-29516203 | MS.gene031628:CDS | 50.0% | |
| ! | CCATTTCTAGGCCAAGGTTC+AGG | + | chr4.3:29516905-29516924 | MS.gene031628:CDS | 50.0% |
| ! | GAGAGGCCAAGGTTTTCAGA+AGG | - | chr4.3:29516689-29516708 | None:intergenic | 50.0% |
| ! | TCACAGCCATTTCTAGGCCA+AGG | + | chr4.3:29516899-29516918 | MS.gene031628:CDS | 50.0% |
| !! | TTTTCGCCGATTGGATGCCA+TGG | - | chr4.3:29516431-29516450 | None:intergenic | 50.0% |
| AAGCTCCGCGAGCTTGTCAA+TGG | - | chr4.3:29516405-29516424 | None:intergenic | 55.0% | |
| CAAAAGGTCCTCGTGATCGC+AGG | + | chr4.3:29516270-29516289 | MS.gene031628:CDS | 55.0% | |
| TGCTTGGTCTGTCATAGCCG+AGG | - | chr4.3:29516346-29516365 | None:intergenic | 55.0% | |
| TTCGACTGAAGGGCCTCGTT+TGG | - | chr4.3:29516944-29516963 | None:intergenic | 55.0% | |
| AGTCGAACCCTGCGATCACG+AGG | - | chr4.3:29516281-29516300 | None:intergenic | 60.0% | |
| ! | TCGCCGATTGGATGCCATGG+AGG | - | chr4.3:29516428-29516447 | None:intergenic | 60.0% |
| AGCTCGCGGAGCTTCCTCCA+TGG | + | chr4.3:29516411-29516430 | MS.gene031628:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 29516173 | 29517183 | 29516173 | ID=MS.gene031628 |
| chr4.3 | mRNA | 29516173 | 29517183 | 29516173 | ID=MS.gene031628.t1;Parent=MS.gene031628 |
| chr4.3 | exon | 29516173 | 29517183 | 29516173 | ID=MS.gene031628.t1.exon1;Parent=MS.gene031628.t1 |
| chr4.3 | CDS | 29516173 | 29517183 | 29516173 | ID=cds.MS.gene031628.t1;Parent=MS.gene031628.t1 |
| Gene Sequence |
| Protein sequence |