AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031632

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031632.t1 MTR_4g079500 98.366 306 2 1 1 306 26 328 0.0 615
MS.gene031632.t1 MTR_2g090900 63.810 315 80 13 6 306 29 323 8.22e-107 314
MS.gene031632.t1 MTR_2g090900 63.323 319 81 14 1 305 26 322 6.61e-106 312
MS.gene031632.t1 MTR_2g078370 43.860 171 74 10 18 178 56 214 1.23e-23 96.7
MS.gene031632.t1 MTR_8g088650 52.941 102 43 1 166 267 228 324 1.90e-23 99.4
MS.gene031632.t1 MTR_2g078360 60.000 75 20 2 226 291 1 74 2.61e-22 89.4
MS.gene031632.t1 MTR_5g075390 48.387 93 48 0 172 264 159 251 5.45e-20 89.4
MS.gene031632.t1 MTR_4g072090 37.589 141 65 2 149 266 314 454 5.98e-20 90.1
MS.gene031632.t1 MTR_2g099050 46.000 100 54 0 170 269 219 318 2.22e-19 88.2
MS.gene031632.t1 MTR_3g005230 49.425 87 44 0 181 267 136 222 3.61e-19 85.5
MS.gene031632.t1 MTR_6g034945 34.286 175 102 2 111 285 96 257 5.25e-19 85.9
MS.gene031632.t1 MTR_3g467120 45.161 93 51 0 172 264 177 269 3.64e-18 84.3
MS.gene031632.t1 MTR_3g094020 44.681 94 52 0 171 264 107 200 4.67e-17 80.5
MS.gene031632.t1 MTR_4g072090 35.714 126 58 2 149 251 314 439 2.83e-15 76.3
MS.gene031632.t1 MTR_1g023690 48.980 98 46 2 171 266 386 481 5.94e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031632.t1 AT3G58120 56.592 311 90 10 19 306 41 329 1.33e-94 283
MS.gene031632.t1 AT2G42380 54.485 301 101 8 20 306 42 320 2.90e-90 272
MS.gene031632.t1 AT2G42380 50.498 301 102 9 20 306 42 309 5.75e-79 243
MS.gene031632.t1 AT3G58120 58.167 251 77 7 19 251 41 281 6.21e-78 239
MS.gene031632.t1 AT2G42380 55.417 240 83 5 20 251 42 265 1.03e-72 225
MS.gene031632.t1 AT2G42380 47.264 201 82 5 20 212 42 226 8.16e-43 147
MS.gene031632.t1 AT2G42380 47.264 201 82 5 20 212 42 226 8.16e-43 147
MS.gene031632.t1 AT1G58110 47.321 112 53 2 156 267 219 324 4.11e-22 95.5
MS.gene031632.t1 AT1G58110 47.321 112 53 2 156 267 219 324 4.11e-22 95.5
MS.gene031632.t1 AT1G43700 49.485 97 49 0 170 266 192 288 1.23e-20 90.9
MS.gene031632.t1 AT4G38900 47.368 95 50 0 170 264 392 486 7.87e-20 90.1
MS.gene031632.t1 AT4G38900 47.368 95 50 0 170 264 392 486 7.87e-20 90.1
MS.gene031632.t1 AT2G40620 45.263 95 52 0 170 264 146 240 4.71e-19 86.7
MS.gene031632.t1 AT1G06070 44.000 100 56 0 170 269 208 307 1.01e-18 86.3
MS.gene031632.t1 AT2G21230 45.361 97 53 0 170 266 368 464 1.96e-18 85.9
MS.gene031632.t1 AT2G21230 45.361 97 53 0 170 266 368 464 1.96e-18 85.9
MS.gene031632.t1 AT1G06850 47.312 93 49 0 172 264 148 240 2.71e-18 84.3
MS.gene031632.t1 AT2G31370 42.991 107 61 0 163 269 192 298 3.85e-18 84.3
MS.gene031632.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene031632.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene031632.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene031632.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene031632.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene031632.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene031632.t1 AT4G38900 44.554 101 50 1 170 264 392 492 1.40e-17 83.6
MS.gene031632.t1 AT5G04840 50.000 84 42 0 181 264 177 260 2.90e-17 80.9
MS.gene031632.t1 AT1G35490 41.509 106 56 2 160 264 158 258 7.48e-17 79.7
MS.gene031632.t1 AT1G35490 41.509 106 56 2 160 264 158 258 7.48e-17 79.7
MS.gene031632.t1 AT2G21230 41.748 103 54 1 170 266 368 470 4.62e-16 79.0
MS.gene031632.t1 AT2G21230 45.122 82 45 0 170 251 368 449 1.78e-14 73.9
MS.gene031632.t1 AT5G04840 51.389 72 35 0 181 252 177 248 8.30e-14 70.5
MS.gene031632.t1 AT5G07160 41.489 94 55 0 171 264 47 140 4.56e-12 63.5
MS.gene031632.t1 AT1G06850 70.455 44 13 0 172 215 148 191 4.05e-11 62.4
MS.gene031632.t1 AT2G12900 34.021 97 64 0 170 266 114 210 8.25e-11 62.0

Find 57 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACCACGGGTTGCATATT+TGG 0.213119 4.3:-29543357 MS.gene031632:CDS
ACGTCTGTGTGCCCCTCTTC+TGG 0.291136 4.3:+29544397 None:intergenic
TCATTATCACATCGTGGTTT+AGG 0.296604 4.3:+29542488 None:intergenic
GGTGAATGCAAACAGGAAAA+TGG 0.353861 4.3:-29544074 MS.gene031632:CDS
GAATCTGATGAGGATGAAAT+TGG 0.366529 4.3:-29544095 MS.gene031632:CDS
ACGAAGTGTGACTTCATTAC+AGG 0.377047 4.3:-29543550 MS.gene031632:intron
ACAATCAACAAAACCCTTCA+TGG 0.391610 4.3:-29544448 MS.gene031632:CDS
AATGATGAAGATGACAATAA+TGG 0.401593 4.3:-29544041 MS.gene031632:CDS
GAAAAGTTTGAAGCATTACT+TGG 0.449386 4.3:+29544473 None:intergenic
TGAAATTGGTGAATGCAAAC+AGG 0.473536 4.3:-29544081 MS.gene031632:CDS
AAGAGGGGCACACAGACGTT+CGG 0.489835 4.3:-29544393 MS.gene031632:CDS
GTAGCTGATGGTGCTGGTGG+TGG 0.496771 4.3:+29544224 None:intergenic
ATGGAGACAATGAGTTTGAA+AGG 0.498812 4.3:-29544313 MS.gene031632:CDS
TGAAGCATTACTTGGTGAGA+TGG 0.500952 4.3:+29544481 None:intergenic
TCACATCGTGGTTTAGGTGA+TGG 0.507950 4.3:+29542494 None:intergenic
TTATGATCAGAAGGAGTTGA+AGG 0.508247 4.3:+29544182 None:intergenic
CTGACCCCAAGAGGGTCAAA+AGG 0.522349 4.3:-29543986 MS.gene031632:intron
TGATGGAGCATTGTCGTCGT+AGG 0.526258 4.3:-29544337 MS.gene031632:CDS
TATGAAGGTCACTGAGTCAC+TGG 0.527916 4.3:+29544370 None:intergenic
CAAGACAAAATCTTCAAAGA+TGG 0.531158 4.3:-29543269 MS.gene031632:intron
CATCATCGATGCTTCTATGA+AGG 0.532117 4.3:+29544355 None:intergenic
TGGTGCTGGTGGTGGCATCA+TGG 0.538097 4.3:+29544232 None:intergenic
CTTCATAGAAGCATCGATGA+TGG 0.538192 4.3:-29544354 MS.gene031632:CDS
AGAAACTCGTCCACCCATGA+AGG 0.540302 4.3:+29544434 None:intergenic
GACTTCTCGTCCACCAGAAG+AGG 0.550382 4.3:-29544410 MS.gene031632:CDS
AGAGGGAGATAGAGAGGCTG+AGG 0.553494 4.3:-29542580 MS.gene031632:CDS
GAGCATTGTCGTCGTAGGGA+TGG 0.556038 4.3:-29544332 MS.gene031632:CDS
ACTTCTCGTCCACCAGAAGA+GGG 0.556593 4.3:-29544409 MS.gene031632:CDS
AGTATCAGTGCTGTCACCAC+GGG 0.561461 4.3:-29543369 MS.gene031632:CDS
CAATCAACAAAACCCTTCAT+GGG 0.563412 4.3:-29544447 MS.gene031632:CDS
TGATGACAAAGAGGAAGATG+AGG 0.565693 4.3:-29544150 MS.gene031632:CDS
TGACAAAGAGGAAGATGAGG+AGG 0.566303 4.3:-29544147 MS.gene031632:CDS
TTAGTGTAGACGAGGTTTCG+AGG 0.573188 4.3:-29544262 MS.gene031632:CDS
CATTGAAGAGGGAGATAGAG+AGG 0.587016 4.3:-29542586 MS.gene031632:CDS
TTGATGCTGTTATGATCAGA+AGG 0.588109 4.3:+29544173 None:intergenic
TTGCATATTTGGATCATCAG+AGG 0.590830 4.3:-29543346 MS.gene031632:CDS
TATGATCAGAAGGAGTTGAA+GGG 0.593074 4.3:+29544183 None:intergenic
CTCATCAAGAAGCATTGAAG+AGG 0.593087 4.3:-29542598 MS.gene031632:CDS
TCTGTGTGCCCCTCTTCTGG+TGG 0.594474 4.3:+29544400 None:intergenic
GACAATGTAGCTGATGGTGC+TGG 0.596193 4.3:+29544218 None:intergenic
GTCCATGTTTAGTGTAGACG+AGG 0.601046 4.3:-29544270 MS.gene031632:CDS
CAGCATCAATGATGACAAAG+AGG 0.602367 4.3:-29544159 MS.gene031632:CDS
GATGGAGCATTGTCGTCGTA+GGG 0.605532 4.3:-29544336 MS.gene031632:CDS
TCAACAAAACCCTTCATGGG+TGG 0.609845 4.3:-29544444 MS.gene031632:CDS
AACCTCGTCTACACTAAACA+TGG 0.622608 4.3:+29544268 None:intergenic
AATGTAGCTGATGGTGCTGG+TGG 0.623330 4.3:+29544221 None:intergenic
AAGTATCAGTGCTGTCACCA+CGG 0.625333 4.3:-29543370 MS.gene031632:CDS
TCATCAAGAAGCATTGAAGA+GGG 0.631177 4.3:-29542597 MS.gene031632:CDS
GAAACTCGTCCACCCATGAA+GGG 0.631276 4.3:+29544435 None:intergenic
CTGCACAAAGATCAAGAGTG+AGG 0.635769 4.3:-29543599 MS.gene031632:CDS
ATTGAAGCATGAATCTGATG+AGG 0.673573 4.3:-29544105 MS.gene031632:CDS
GAATGCAAACAGGAAAATGG+AGG 0.685882 4.3:-29544071 MS.gene031632:CDS
CTTCTCGTCCACCAGAAGAG+GGG 0.695347 4.3:-29544408 MS.gene031632:CDS
CGTGGTTTAGGTGATGGAGA+TGG 0.696148 4.3:+29542500 None:intergenic
TGAGTATCATTATCACATCG+TGG 0.696934 4.3:+29542482 None:intergenic
TTAGATGACAATGTAGCTGA+TGG 0.701045 4.3:+29544212 None:intergenic
TGATCCAAATATGCAACCCG+TGG 0.752305 4.3:+29543353 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAATTAAACAATTTTG+AGG + chr4.3:29543953-29543972 None:intergenic 10.0%
!!! TGTTTAATTATTTTTACTAT+AGG - chr4.3:29543959-29543978 MS.gene031632:intron 10.0%
!! GAATGAAAAAACTATATAAT+AGG - chr4.3:29544008-29544027 MS.gene031632:CDS 15.0%
!!! ATCTATAAGTATTATTTTGA+AGG + chr4.3:29544285-29544304 None:intergenic 15.0%
!!! ATTGATAATACTACAAATTA+AGG + chr4.3:29543061-29543080 None:intergenic 15.0%
!! CTATATAATAGGCTTATAAA+TGG - chr4.3:29544019-29544038 MS.gene031632:CDS 20.0%
!!! TAATACACATATTTGGTTTT+AGG + chr4.3:29543030-29543049 None:intergenic 20.0%
!!! TATAATGTATTGATGAATGA+AGG - chr4.3:29543552-29543571 MS.gene031632:CDS 20.0%
!!! TATATATTGTTATTGATACG+TGG - chr4.3:29543803-29543822 MS.gene031632:intron 20.0%
! AACCAAATATGTGTATTACA+TGG - chr4.3:29543032-29543051 MS.gene031632:intron 25.0%
! AATGATGAAGATGACAATAA+TGG - chr4.3:29542907-29542926 MS.gene031632:intron 25.0%
! GAAAGTTTAGACAGAATTAT+AGG - chr4.3:29543856-29543875 MS.gene031632:intron 25.0%
!! TTATTAATTCTAGCTAGCTA+TGG - chr4.3:29543115-29543134 MS.gene031632:intron 25.0%
!!! ATCTTTGAAGATTTTGTCTT+GGG + chr4.3:29543680-29543699 None:intergenic 25.0%
AATGGAACAGAGGATAATAA+CGG - chr4.3:29544037-29544056 MS.gene031632:CDS 30.0%
AGCCATGTAATACACATATT+TGG + chr4.3:29543037-29543056 None:intergenic 30.0%
ATACTACATGACAGTGTAAA+AGG + chr4.3:29543736-29543755 None:intergenic 30.0%
CAAGACAAAATCTTCAAAGA+TGG - chr4.3:29543679-29543698 MS.gene031632:intron 30.0%
GGTGAAATGAGAATATGTTA+AGG + chr4.3:29543715-29543734 None:intergenic 30.0%
GTCATTAAGATTACTACTAG+TGG - chr4.3:29544246-29544265 MS.gene031632:CDS 30.0%
TTACATTGAACATGACATGA+TGG - chr4.3:29543435-29543454 MS.gene031632:intron 30.0%
! GAAAAGTTTGAAGCATTACT+TGG + chr4.3:29542478-29542497 None:intergenic 30.0%
!! CATCTTTGAAGATTTTGTCT+TGG + chr4.3:29543681-29543700 None:intergenic 30.0%
!! TGTTCTTGATGTTTTGTTGT+TGG + chr4.3:29544405-29544424 None:intergenic 30.0%
AAAAATTACTGACCCCAAGA+GGG - chr4.3:29542954-29542973 MS.gene031632:intron 35.0%
ACAATCAACAAAACCCTTCA+TGG - chr4.3:29542500-29542519 MS.gene031632:CDS 35.0%
ATGGAGACAATGAGTTTGAA+AGG - chr4.3:29542635-29542654 MS.gene031632:intron 35.0%
ATTGAAGCATGAATCTGATG+AGG - chr4.3:29542843-29542862 MS.gene031632:intron 35.0%
CAATCAACAAAACCCTTCAT+GGG - chr4.3:29542501-29542520 MS.gene031632:CDS 35.0%
CAGAGCAATTATTAGAGAAG+AGG - chr4.3:29544111-29544130 MS.gene031632:CDS 35.0%
GAATCTGATGAGGATGAAAT+TGG - chr4.3:29542853-29542872 MS.gene031632:intron 35.0%
TAGGCTTATAAATGGAACAG+AGG - chr4.3:29544027-29544046 MS.gene031632:CDS 35.0%
TATGATCAGAAGGAGTTGAA+GGG + chr4.3:29542768-29542787 None:intergenic 35.0%
TCACCATCACATGAATGAAA+AGG + chr4.3:29543279-29543298 None:intergenic 35.0%
TCATTATCACATCGTGGTTT+AGG + chr4.3:29544463-29544482 None:intergenic 35.0%
TGAAATTGGTGAATGCAAAC+AGG - chr4.3:29542867-29542886 MS.gene031632:intron 35.0%
TGAGTATCATTATCACATCG+TGG + chr4.3:29544469-29544488 None:intergenic 35.0%
TTAGATGACAATGTAGCTGA+TGG + chr4.3:29542739-29542758 None:intergenic 35.0%
TTATGATCAGAAGGAGTTGA+AGG + chr4.3:29542769-29542788 None:intergenic 35.0%
TTGATGCTGTTATGATCAGA+AGG + chr4.3:29542778-29542797 None:intergenic 35.0%
TTGCATATTTGGATCATCAG+AGG - chr4.3:29543602-29543621 MS.gene031632:CDS 35.0%
! GTTCCTTTTCATTCATGTGA+TGG - chr4.3:29543273-29543292 MS.gene031632:CDS 35.0%
!! TACTTGGTGAGATGGTTTTA+AGG + chr4.3:29542462-29542481 None:intergenic 35.0%
!! TCATCAAGAAGCATTGAAGA+GGG - chr4.3:29544351-29544370 MS.gene031632:CDS 35.0%
!!! CGGAATTAGCTTCTTTTTTG+TGG - chr4.3:29544057-29544076 MS.gene031632:CDS 35.0%
!!! TGAAGGGTTTTGTTGATTGT+TGG + chr4.3:29542500-29542519 None:intergenic 35.0%
AACCTCGTCTACACTAAACA+TGG + chr4.3:29542683-29542702 None:intergenic 40.0%
ACGAAGTGTGACTTCATTAC+AGG - chr4.3:29543398-29543417 MS.gene031632:intron 40.0%
ATTGAAACATGAGCTAGCAG+TGG - chr4.3:29543221-29543240 MS.gene031632:intron 40.0%
CAAAAATTACTGACCCCAAG+AGG - chr4.3:29542953-29542972 MS.gene031632:intron 40.0%
CAGCATCAATGATGACAAAG+AGG - chr4.3:29542789-29542808 MS.gene031632:intron 40.0%
CATCATCGATGCTTCTATGA+AGG + chr4.3:29542596-29542615 None:intergenic 40.0%
GAATGCAAACAGGAAAATGG+AGG - chr4.3:29542877-29542896 MS.gene031632:intron 40.0%
GCAATTGCAAGCTTAGTTAG+TGG + chr4.3:29543926-29543945 None:intergenic 40.0%
GGTGAATGCAAACAGGAAAA+TGG - chr4.3:29542874-29542893 MS.gene031632:intron 40.0%
TGATGACAAAGAGGAAGATG+AGG - chr4.3:29542798-29542817 MS.gene031632:intron 40.0%
TTGTGGAACTTTGCATCGTA+CGG - chr4.3:29544074-29544093 MS.gene031632:CDS 40.0%
! CTCTTGGGGTCAGTAATTTT+TGG + chr4.3:29542955-29542974 None:intergenic 40.0%
! GAAGATTTTGTCTTGGGCTA+GGG + chr4.3:29543674-29543693 None:intergenic 40.0%
! TAGTACCTTTTGACCCTCTT+GGG + chr4.3:29542970-29542989 None:intergenic 40.0%
! TGAAGATTTTGTCTTGGGCT+AGG + chr4.3:29543675-29543694 None:intergenic 40.0%
! TGAAGCATTACTTGGTGAGA+TGG + chr4.3:29542470-29542489 None:intergenic 40.0%
!! CTCATCAAGAAGCATTGAAG+AGG - chr4.3:29544350-29544369 MS.gene031632:CDS 40.0%
!! CTTCATAGAAGCATCGATGA+TGG - chr4.3:29542594-29542613 MS.gene031632:CDS 40.0%
!!! GGTGAGATGGTTTTAAGGTT+AGG + chr4.3:29542457-29542476 None:intergenic 40.0%
AAGTATCAGTGCTGTCACCA+CGG - chr4.3:29543578-29543597 MS.gene031632:CDS 45.0%
CATTGAAGAGGGAGATAGAG+AGG - chr4.3:29544362-29544381 MS.gene031632:CDS 45.0%
CTGCACAAAGATCAAGAGTG+AGG - chr4.3:29543349-29543368 MS.gene031632:CDS 45.0%
GTCCATGTTTAGTGTAGACG+AGG - chr4.3:29542678-29542697 MS.gene031632:intron 45.0%
TATGAAGGTCACTGAGTCAC+TGG + chr4.3:29542581-29542600 None:intergenic 45.0%
TCAACAAAACCCTTCATGGG+TGG - chr4.3:29542504-29542523 MS.gene031632:CDS 45.0%
TCACATCGTGGTTTAGGTGA+TGG + chr4.3:29544457-29544476 None:intergenic 45.0%
TGACAAAGAGGAAGATGAGG+AGG - chr4.3:29542801-29542820 MS.gene031632:intron 45.0%
TGATCCAAATATGCAACCCG+TGG + chr4.3:29543598-29543617 None:intergenic 45.0%
TTAGTGTAGACGAGGTTTCG+AGG - chr4.3:29542686-29542705 MS.gene031632:intron 45.0%
! AGTACCTTTTGACCCTCTTG+GGG + chr4.3:29542969-29542988 None:intergenic 45.0%
! GTAGTACCTTTTGACCCTCT+TGG + chr4.3:29542971-29542990 None:intergenic 45.0%
!! GGGGTCAGTAATTTTTGGAC+TGG + chr4.3:29542950-29542969 None:intergenic 45.0%
!!! AATTTAAAATAAATAAGTAA+AGG + chr4.3:29543180-29543199 None:intergenic 5.0%
!!! ATTTATTTTAAATTTTTTTC+TGG - chr4.3:29543186-29543205 MS.gene031632:intron 5.0%
ACATGAGCTAGCAGTGGTGA+TGG - chr4.3:29543227-29543246 MS.gene031632:intron 50.0%
ACTTCTCGTCCACCAGAAGA+GGG - chr4.3:29542539-29542558 MS.gene031632:CDS 50.0%
AGAAACTCGTCCACCCATGA+AGG + chr4.3:29542517-29542536 None:intergenic 50.0%
AGTATCAGTGCTGTCACCAC+GGG - chr4.3:29543579-29543598 MS.gene031632:CDS 50.0%
CTAGTTGCAGACACAGCACA+TGG + chr4.3:29544218-29544237 None:intergenic 50.0%
GAAACTCGTCCACCCATGAA+GGG + chr4.3:29542516-29542535 None:intergenic 50.0%
! AATGTAGCTGATGGTGCTGG+TGG + chr4.3:29542730-29542749 None:intergenic 50.0%
! GACAATGTAGCTGATGGTGC+TGG + chr4.3:29542733-29542752 None:intergenic 50.0%
! GTCACCACGGGTTGCATATT+TGG - chr4.3:29543591-29543610 MS.gene031632:CDS 50.0%
!! CGTGGTTTAGGTGATGGAGA+TGG + chr4.3:29544451-29544470 None:intergenic 50.0%
!! GATGGAGCATTGTCGTCGTA+GGG - chr4.3:29542612-29542631 MS.gene031632:intron 50.0%
!! TGATGGAGCATTGTCGTCGT+AGG - chr4.3:29542611-29542630 MS.gene031632:intron 50.0%
AGAGGGAGATAGAGAGGCTG+AGG - chr4.3:29544368-29544387 MS.gene031632:CDS 55.0%
CTGACCCCAAGAGGGTCAAA+AGG - chr4.3:29542962-29542981 MS.gene031632:intron 55.0%
CTTCTCGTCCACCAGAAGAG+GGG - chr4.3:29542540-29542559 MS.gene031632:CDS 55.0%
GACTTCTCGTCCACCAGAAG+AGG - chr4.3:29542538-29542557 MS.gene031632:CDS 55.0%
! AAGAGGGGCACACAGACGTT+CGG - chr4.3:29542555-29542574 MS.gene031632:CDS 55.0%
! GAGCATTGTCGTCGTAGGGA+TGG - chr4.3:29542616-29542635 MS.gene031632:intron 55.0%
ACGTCTGTGTGCCCCTCTTC+TGG + chr4.3:29542554-29542573 None:intergenic 60.0%
TCTGTGTGCCCCTCTTCTGG+TGG + chr4.3:29542551-29542570 None:intergenic 60.0%
!! GTAGCTGATGGTGCTGGTGG+TGG + chr4.3:29542727-29542746 None:intergenic 60.0%
!! TGGTGCTGGTGGTGGCATCA+TGG + chr4.3:29542719-29542738 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 29542451 29544519 29542451 ID=MS.gene031632
chr4.3 mRNA 29542451 29544519 29542451 ID=MS.gene031632.t1;Parent=MS.gene031632
chr4.3 exon 29543987 29544519 29543987 ID=MS.gene031632.t1.exon1;Parent=MS.gene031632.t1
chr4.3 CDS 29543987 29544519 29543987 ID=cds.MS.gene031632.t1;Parent=MS.gene031632.t1
chr4.3 exon 29543551 29543641 29543551 ID=MS.gene031632.t1.exon2;Parent=MS.gene031632.t1
chr4.3 CDS 29543551 29543641 29543551 ID=cds.MS.gene031632.t1;Parent=MS.gene031632.t1
chr4.3 exon 29543270 29543396 29543270 ID=MS.gene031632.t1.exon3;Parent=MS.gene031632.t1
chr4.3 CDS 29543270 29543396 29543270 ID=cds.MS.gene031632.t1;Parent=MS.gene031632.t1
chr4.3 exon 29542451 29542620 29542451 ID=MS.gene031632.t1.exon4;Parent=MS.gene031632.t1
chr4.3 CDS 29542451 29542620 29542451 ID=cds.MS.gene031632.t1;Parent=MS.gene031632.t1
Gene Sequence

>MS.gene031632

ATGCCTAACCTTAAAACCATCTCACCAAGTAATGCTTCAAACTTTTCCAACAATCAACAAAACCCTTCATGGGTGGACGAGTTTCTTGACTTCTCGTCCACCAGAAGAGGGGCACACAGACGTTCGGCCAGTGACTCAGTGACCTTCATAGAAGCATCGATGATGGAGCATTGTCGTCGTAGGGATGGAGACAATGAGTTTGAAAGGTTTGATGATGAACAATTGATGTCCATGTTTAGTGTAGACGAGGTTTCGAGGAATAATACCATGATGCCACCACCAGCACCATCAGCTACATTGTCATCTAACTCTAACCCTTCAACTCCTTCTGATCATAACAGCATCAATGATGACAAAGAGGAAGATGAGGAGGAAAAGATGCAACAGAAACAATTGAAGCATGAATCTGATGAGGATGAAATTGGTGAATGCAAACAGGAAAATGGAGGAGTTGTGAATGATGAAGATGACAATAATGGAAATACAACAACTTTTTCCAGTCCAAAAATTACTGACCCCAAGAGGGTCAAAAGGTACTACTCAAACATATTATTCATGTCACACAATTGTCACATTCCTAAAACCAAATATGTGTATTACATGGCTTCCTTAATTTGTAGTATTATCAATGTGTGAGCGAGACAATTTAATGTTAATTTGTGTATTATTAATTCTAGCTAGCTATGGAGAACATGTTCTTCATATATAAATATATACATCAGAAGACCTTTACTTATTTATTTTAAATTTTTTTCTGGTTTTATTTTCTGATTGAAACATGAGCTAGCAGTGGTGATGGTGATTATGTAAGAATATATTTCTGTTCCTTTTCATTCATGTGATGGTGATTGTAATTACTGTGTTTGCATATGTATCAGAATCTTAGCAAATAGACAATCTGCACAAAGATCAAGAGTGAGGAAACTGCAATACATATCAGAGCTTGAACGAAGTGTGACTTCATTACAGGTGAATTTAATAAACTTACATTGAACATGACATGATGGTAACTTAATTTTATACTAAGCATATACTATTAATAATTTGATGTGTATAGTAATTAATAATAATATTATGATTATATTTTGTTTTAACTTATTATATAATGTATTGATGAATGAAGGCTGAAGTATCAGTGCTGTCACCACGGGTTGCATATTTGGATCATCAGAGGTTGCTTCTAAATGTTGATAACAGTGCTATCAAGCAAAGAATCGCAGCCCTAGCCCAAGACAAAATCTTCAAAGATGGTATGCTACATCCTTAACATATTCTCATTTCACCTTTTACACTGTCATGTAGTATAAGTTTTCTGATTCATTAATTAATCACTGTTAAGATTTTGTTCTGTATATATATTGTTATTGATACGTGGTTTTATACTTTCAGTATGTCATGTTCAAGAGAAAGTTTAGACAGAATTATAGGAAGAAAGTACAATTTAGTTTATAGAGATGTACTTTTCAATTGTACCACTAACTAAGCTTGCAATTGCATCTCCTCAAAATTGTTTAATTATTTTTACTATAGGAGAGTTATTAAATATTAATTATTAATGAATGAAAAAACTATATAATAGGCTTATAAATGGAACAGAGGATAATAACGGAATTAGCTTCTTTTTTGTGGAACTTTGCATCGTACGGCACATGAGTTGAATCAGAGCAATTATTAGAGAAGAGGACAGATTGATATTGATTTTAGTAAAAGCACTTGCATGCAGTTGCACTGCACACATATTAAAATGCTGTATGTCTGAGATAACCATGTGCTGTGTCTGCAACTAGTAGTTATAGTCATTAAGATTACTACTAGTGGTACTACTTAAAAACCTTCAAAATAATACTTATAGATTGATTATTAATATTATACATGTTACAATGAATATTAATAATGCAGCTCATCAAGAAGCATTGAAGAGGGAGATAGAGAGGCTGAGGCAAGTGTATCACCAACAACAAAACATCAAGAACAATGCTACAGCAGCAGTAGTGTCACCATCTCCATCACCTAAACCACGATGTGATAATGATACTCACATTGAAAATGAACATCTTATCAATGTTTGA
Protein sequence

>MS.gene031632.t1

MPNLKTISPSNASNFSNNQQNPSWVDEFLDFSSTRRGAHRRSASDSVTFIEASMMEHCRRRDGDNEFERFDDEQLMSMFSVDEVSRNNTMMPPPAPSATLSSNSNPSTPSDHNSINDDKEEDEEEKMQQKQLKHESDEDEIGECKQENGGVVNDEDDNNGNTTTFSSPKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAYLDHQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQQNIKNNATAAVVSPSPSPKPRCDNDTHIENEHLINV