AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031633

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031633.t1 MTR_4g079500 98.366 306 2 1 1 306 26 328 0.0 615
MS.gene031633.t1 MTR_2g090900 63.810 315 80 13 6 306 29 323 8.22e-107 314
MS.gene031633.t1 MTR_2g090900 63.323 319 81 14 1 305 26 322 6.61e-106 312
MS.gene031633.t1 MTR_2g078370 43.860 171 74 10 18 178 56 214 1.23e-23 96.7
MS.gene031633.t1 MTR_8g088650 52.941 102 43 1 166 267 228 324 1.90e-23 99.4
MS.gene031633.t1 MTR_2g078360 60.000 75 20 2 226 291 1 74 2.61e-22 89.4
MS.gene031633.t1 MTR_5g075390 48.387 93 48 0 172 264 159 251 5.45e-20 89.4
MS.gene031633.t1 MTR_4g072090 37.589 141 65 2 149 266 314 454 5.98e-20 90.1
MS.gene031633.t1 MTR_2g099050 46.000 100 54 0 170 269 219 318 2.22e-19 88.2
MS.gene031633.t1 MTR_3g005230 49.425 87 44 0 181 267 136 222 3.61e-19 85.5
MS.gene031633.t1 MTR_6g034945 34.286 175 102 2 111 285 96 257 5.25e-19 85.9
MS.gene031633.t1 MTR_3g467120 45.161 93 51 0 172 264 177 269 3.64e-18 84.3
MS.gene031633.t1 MTR_3g094020 44.681 94 52 0 171 264 107 200 4.67e-17 80.5
MS.gene031633.t1 MTR_4g072090 35.714 126 58 2 149 251 314 439 2.83e-15 76.3
MS.gene031633.t1 MTR_1g023690 48.980 98 46 2 171 266 386 481 5.94e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031633.t1 AT3G58120 56.592 311 90 10 19 306 41 329 1.33e-94 283
MS.gene031633.t1 AT2G42380 54.485 301 101 8 20 306 42 320 2.90e-90 272
MS.gene031633.t1 AT2G42380 50.498 301 102 9 20 306 42 309 5.75e-79 243
MS.gene031633.t1 AT3G58120 58.167 251 77 7 19 251 41 281 6.21e-78 239
MS.gene031633.t1 AT2G42380 55.417 240 83 5 20 251 42 265 1.03e-72 225
MS.gene031633.t1 AT2G42380 47.264 201 82 5 20 212 42 226 8.16e-43 147
MS.gene031633.t1 AT2G42380 47.264 201 82 5 20 212 42 226 8.16e-43 147
MS.gene031633.t1 AT1G58110 47.321 112 53 2 156 267 219 324 4.11e-22 95.5
MS.gene031633.t1 AT1G58110 47.321 112 53 2 156 267 219 324 4.11e-22 95.5
MS.gene031633.t1 AT1G43700 49.485 97 49 0 170 266 192 288 1.23e-20 90.9
MS.gene031633.t1 AT4G38900 47.368 95 50 0 170 264 392 486 7.87e-20 90.1
MS.gene031633.t1 AT4G38900 47.368 95 50 0 170 264 392 486 7.87e-20 90.1
MS.gene031633.t1 AT2G40620 45.263 95 52 0 170 264 146 240 4.71e-19 86.7
MS.gene031633.t1 AT1G06070 44.000 100 56 0 170 269 208 307 1.01e-18 86.3
MS.gene031633.t1 AT2G21230 45.361 97 53 0 170 266 368 464 1.96e-18 85.9
MS.gene031633.t1 AT2G21230 45.361 97 53 0 170 266 368 464 1.96e-18 85.9
MS.gene031633.t1 AT1G06850 47.312 93 49 0 172 264 148 240 2.71e-18 84.3
MS.gene031633.t1 AT2G31370 42.991 107 61 0 163 269 192 298 3.85e-18 84.3
MS.gene031633.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene031633.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene031633.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene031633.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene031633.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene031633.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene031633.t1 AT4G38900 44.554 101 50 1 170 264 392 492 1.40e-17 83.6
MS.gene031633.t1 AT5G04840 50.000 84 42 0 181 264 177 260 2.90e-17 80.9
MS.gene031633.t1 AT1G35490 41.509 106 56 2 160 264 158 258 7.48e-17 79.7
MS.gene031633.t1 AT1G35490 41.509 106 56 2 160 264 158 258 7.48e-17 79.7
MS.gene031633.t1 AT2G21230 41.748 103 54 1 170 266 368 470 4.62e-16 79.0
MS.gene031633.t1 AT2G21230 45.122 82 45 0 170 251 368 449 1.78e-14 73.9
MS.gene031633.t1 AT5G04840 51.389 72 35 0 181 252 177 248 8.30e-14 70.5
MS.gene031633.t1 AT5G07160 41.489 94 55 0 171 264 47 140 4.56e-12 63.5
MS.gene031633.t1 AT1G06850 70.455 44 13 0 172 215 148 191 4.05e-11 62.4
MS.gene031633.t1 AT2G12900 34.021 97 64 0 170 266 114 210 8.25e-11 62.0

Find 57 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACCACGGGTTGCATATT+TGG 0.213119 4.3:+29756824 MS.gene031633:CDS
ACGTCTGTGTGCCCCTCTTC+TGG 0.291136 4.3:-29755784 None:intergenic
TCATTATCACATCGTGGTTT+AGG 0.296604 4.3:-29757693 None:intergenic
GGTGAATGCAAACAGGAAAA+TGG 0.353861 4.3:+29756107 MS.gene031633:CDS
GAATCTGATGAGGATGAAAT+TGG 0.366529 4.3:+29756086 MS.gene031633:CDS
ACGAAGTGTGACTTCATTAC+AGG 0.377047 4.3:+29756631 MS.gene031633:CDS
ACAATCAACAAAACCCTTCA+TGG 0.391610 4.3:+29755733 MS.gene031633:CDS
AATGATGAAGATGACAATAA+TGG 0.401593 4.3:+29756140 MS.gene031633:CDS
GAAAAGTTTGAAGCATTACT+TGG 0.449386 4.3:-29755708 None:intergenic
TGAAATTGGTGAATGCAAAC+AGG 0.473536 4.3:+29756100 MS.gene031633:CDS
AAGAGGGGCACACAGACGTT+CGG 0.489835 4.3:+29755788 MS.gene031633:CDS
GTAGCTGATGGTGCTGGTGG+TGG 0.496771 4.3:-29755957 None:intergenic
ATGGAGACAATGAGTTTGAA+AGG 0.498812 4.3:+29755868 MS.gene031633:CDS
TGAAGCATTACTTGGTGAGA+TGG 0.500952 4.3:-29755700 None:intergenic
TCACATCGTGGTTTAGGTGA+TGG 0.507950 4.3:-29757687 None:intergenic
TTATGATCAGAAGGAGTTGA+AGG 0.508247 4.3:-29755999 None:intergenic
CTGACCCCAAGAGGGTCAAA+AGG 0.522349 4.3:+29756195 MS.gene031633:CDS
TGATGGAGCATTGTCGTCGT+AGG 0.526258 4.3:+29755844 MS.gene031633:CDS
TATGAAGGTCACTGAGTCAC+TGG 0.527916 4.3:-29755811 None:intergenic
CAAGACAAAATCTTCAAAGA+TGG 0.531158 4.3:+29756912 MS.gene031633:CDS
CATCATCGATGCTTCTATGA+AGG 0.532117 4.3:-29755826 None:intergenic
TGGTGCTGGTGGTGGCATCA+TGG 0.538097 4.3:-29755949 None:intergenic
CTTCATAGAAGCATCGATGA+TGG 0.538192 4.3:+29755827 MS.gene031633:CDS
AGAAACTCGTCCACCCATGA+AGG 0.540302 4.3:-29755747 None:intergenic
GACTTCTCGTCCACCAGAAG+AGG 0.550382 4.3:+29755771 MS.gene031633:CDS
AGAGGGAGATAGAGAGGCTG+AGG 0.553494 4.3:+29757601 MS.gene031633:CDS
GAGCATTGTCGTCGTAGGGA+TGG 0.556038 4.3:+29755849 MS.gene031633:CDS
ACTTCTCGTCCACCAGAAGA+GGG 0.556593 4.3:+29755772 MS.gene031633:CDS
AGTATCAGTGCTGTCACCAC+GGG 0.561461 4.3:+29756812 MS.gene031633:CDS
CAATCAACAAAACCCTTCAT+GGG 0.563412 4.3:+29755734 MS.gene031633:CDS
TGATGACAAAGAGGAAGATG+AGG 0.565693 4.3:+29756031 MS.gene031633:CDS
TGACAAAGAGGAAGATGAGG+AGG 0.566303 4.3:+29756034 MS.gene031633:CDS
TTAGTGTAGACGAGGTTTCG+AGG 0.573188 4.3:+29755919 MS.gene031633:CDS
CATTGAAGAGGGAGATAGAG+AGG 0.587016 4.3:+29757595 MS.gene031633:CDS
TTGATGCTGTTATGATCAGA+AGG 0.588109 4.3:-29756008 None:intergenic
TTGCATATTTGGATCATCAG+AGG 0.590830 4.3:+29756835 MS.gene031633:CDS
TATGATCAGAAGGAGTTGAA+GGG 0.593074 4.3:-29755998 None:intergenic
CTCATCAAGAAGCATTGAAG+AGG 0.593087 4.3:+29757583 MS.gene031633:CDS
TCTGTGTGCCCCTCTTCTGG+TGG 0.594474 4.3:-29755781 None:intergenic
GACAATGTAGCTGATGGTGC+TGG 0.596193 4.3:-29755963 None:intergenic
GTCCATGTTTAGTGTAGACG+AGG 0.601046 4.3:+29755911 MS.gene031633:CDS
CAGCATCAATGATGACAAAG+AGG 0.602367 4.3:+29756022 MS.gene031633:CDS
GATGGAGCATTGTCGTCGTA+GGG 0.605532 4.3:+29755845 MS.gene031633:CDS
TCAACAAAACCCTTCATGGG+TGG 0.609845 4.3:+29755737 MS.gene031633:CDS
AACCTCGTCTACACTAAACA+TGG 0.622608 4.3:-29755913 None:intergenic
AATGTAGCTGATGGTGCTGG+TGG 0.623330 4.3:-29755960 None:intergenic
AAGTATCAGTGCTGTCACCA+CGG 0.625333 4.3:+29756811 MS.gene031633:CDS
TCATCAAGAAGCATTGAAGA+GGG 0.631177 4.3:+29757584 MS.gene031633:CDS
GAAACTCGTCCACCCATGAA+GGG 0.631276 4.3:-29755746 None:intergenic
CTGCACAAAGATCAAGAGTG+AGG 0.635769 4.3:+29756582 MS.gene031633:CDS
ATTGAAGCATGAATCTGATG+AGG 0.673573 4.3:+29756076 MS.gene031633:CDS
GAATGCAAACAGGAAAATGG+AGG 0.685882 4.3:+29756110 MS.gene031633:CDS
CTTCTCGTCCACCAGAAGAG+GGG 0.695347 4.3:+29755773 MS.gene031633:CDS
CGTGGTTTAGGTGATGGAGA+TGG 0.696148 4.3:-29757681 None:intergenic
TGAGTATCATTATCACATCG+TGG 0.696934 4.3:-29757699 None:intergenic
TTAGATGACAATGTAGCTGA+TGG 0.701045 4.3:-29755969 None:intergenic
TGATCCAAATATGCAACCCG+TGG 0.752305 4.3:-29756828 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAATTAAACAATTTTG+AGG - chr4.3:29757186-29757205 None:intergenic 10.0%
!!! TGTTTAATTATTTTTACTAT+AGG + chr4.3:29757192-29757211 MS.gene031633:intron 10.0%
!! GAATGAAAAAACTATATAAT+AGG + chr4.3:29757241-29757260 MS.gene031633:intron 15.0%
!!! ATCTATAAGTATTATTTTGA+AGG - chr4.3:29757518-29757537 None:intergenic 15.0%
!!! ATTGATAATACTACAAATTA+AGG - chr4.3:29756294-29756313 None:intergenic 15.0%
!! CTATATAATAGGCTTATAAA+TGG + chr4.3:29757252-29757271 MS.gene031633:intron 20.0%
!!! TAATACACATATTTGGTTTT+AGG - chr4.3:29756263-29756282 None:intergenic 20.0%
!!! TATAATGTATTGATGAATGA+AGG + chr4.3:29756785-29756804 MS.gene031633:intron 20.0%
!!! TATATATTGTTATTGATACG+TGG + chr4.3:29757036-29757055 MS.gene031633:intron 20.0%
! AACCAAATATGTGTATTACA+TGG + chr4.3:29756265-29756284 MS.gene031633:intron 25.0%
! AATGATGAAGATGACAATAA+TGG + chr4.3:29756140-29756159 MS.gene031633:CDS 25.0%
! GAAAGTTTAGACAGAATTAT+AGG + chr4.3:29757089-29757108 MS.gene031633:intron 25.0%
!! TTATTAATTCTAGCTAGCTA+TGG + chr4.3:29756348-29756367 MS.gene031633:intron 25.0%
!!! ATCTTTGAAGATTTTGTCTT+GGG - chr4.3:29756913-29756932 None:intergenic 25.0%
AATGGAACAGAGGATAATAA+CGG + chr4.3:29757270-29757289 MS.gene031633:intron 30.0%
AGCCATGTAATACACATATT+TGG - chr4.3:29756270-29756289 None:intergenic 30.0%
ATACTACATGACAGTGTAAA+AGG - chr4.3:29756969-29756988 None:intergenic 30.0%
CAAGACAAAATCTTCAAAGA+TGG + chr4.3:29756912-29756931 MS.gene031633:CDS 30.0%
GGTGAAATGAGAATATGTTA+AGG - chr4.3:29756948-29756967 None:intergenic 30.0%
GTCATTAAGATTACTACTAG+TGG + chr4.3:29757479-29757498 MS.gene031633:intron 30.0%
TTACATTGAACATGACATGA+TGG + chr4.3:29756668-29756687 MS.gene031633:intron 30.0%
! GAAAAGTTTGAAGCATTACT+TGG - chr4.3:29755711-29755730 None:intergenic 30.0%
!! CATCTTTGAAGATTTTGTCT+TGG - chr4.3:29756914-29756933 None:intergenic 30.0%
!! TGTTCTTGATGTTTTGTTGT+TGG - chr4.3:29757638-29757657 None:intergenic 30.0%
AAAAATTACTGACCCCAAGA+GGG + chr4.3:29756187-29756206 MS.gene031633:CDS 35.0%
ACAATCAACAAAACCCTTCA+TGG + chr4.3:29755733-29755752 MS.gene031633:CDS 35.0%
ATGGAGACAATGAGTTTGAA+AGG + chr4.3:29755868-29755887 MS.gene031633:CDS 35.0%
ATTGAAGCATGAATCTGATG+AGG + chr4.3:29756076-29756095 MS.gene031633:CDS 35.0%
CAATCAACAAAACCCTTCAT+GGG + chr4.3:29755734-29755753 MS.gene031633:CDS 35.0%
CAGAGCAATTATTAGAGAAG+AGG + chr4.3:29757344-29757363 MS.gene031633:intron 35.0%
GAATCTGATGAGGATGAAAT+TGG + chr4.3:29756086-29756105 MS.gene031633:CDS 35.0%
TAGGCTTATAAATGGAACAG+AGG + chr4.3:29757260-29757279 MS.gene031633:intron 35.0%
TATGATCAGAAGGAGTTGAA+GGG - chr4.3:29756001-29756020 None:intergenic 35.0%
TCACCATCACATGAATGAAA+AGG - chr4.3:29756512-29756531 None:intergenic 35.0%
TCATTATCACATCGTGGTTT+AGG - chr4.3:29757696-29757715 None:intergenic 35.0%
TGAAATTGGTGAATGCAAAC+AGG + chr4.3:29756100-29756119 MS.gene031633:CDS 35.0%
TGAGTATCATTATCACATCG+TGG - chr4.3:29757702-29757721 None:intergenic 35.0%
TTAGATGACAATGTAGCTGA+TGG - chr4.3:29755972-29755991 None:intergenic 35.0%
TTATGATCAGAAGGAGTTGA+AGG - chr4.3:29756002-29756021 None:intergenic 35.0%
TTGATGCTGTTATGATCAGA+AGG - chr4.3:29756011-29756030 None:intergenic 35.0%
TTGCATATTTGGATCATCAG+AGG + chr4.3:29756835-29756854 MS.gene031633:CDS 35.0%
! GTTCCTTTTCATTCATGTGA+TGG + chr4.3:29756506-29756525 MS.gene031633:intron 35.0%
!! TACTTGGTGAGATGGTTTTA+AGG - chr4.3:29755695-29755714 None:intergenic 35.0%
!! TCATCAAGAAGCATTGAAGA+GGG + chr4.3:29757584-29757603 MS.gene031633:CDS 35.0%
!!! CGGAATTAGCTTCTTTTTTG+TGG + chr4.3:29757290-29757309 MS.gene031633:intron 35.0%
!!! TGAAGGGTTTTGTTGATTGT+TGG - chr4.3:29755733-29755752 None:intergenic 35.0%
AACCTCGTCTACACTAAACA+TGG - chr4.3:29755916-29755935 None:intergenic 40.0%
ACGAAGTGTGACTTCATTAC+AGG + chr4.3:29756631-29756650 MS.gene031633:CDS 40.0%
ATTGAAACATGAGCTAGCAG+TGG + chr4.3:29756454-29756473 MS.gene031633:intron 40.0%
CAAAAATTACTGACCCCAAG+AGG + chr4.3:29756186-29756205 MS.gene031633:CDS 40.0%
CAGCATCAATGATGACAAAG+AGG + chr4.3:29756022-29756041 MS.gene031633:CDS 40.0%
CATCATCGATGCTTCTATGA+AGG - chr4.3:29755829-29755848 None:intergenic 40.0%
GAATGCAAACAGGAAAATGG+AGG + chr4.3:29756110-29756129 MS.gene031633:CDS 40.0%
GCAATTGCAAGCTTAGTTAG+TGG - chr4.3:29757159-29757178 None:intergenic 40.0%
GGTGAATGCAAACAGGAAAA+TGG + chr4.3:29756107-29756126 MS.gene031633:CDS 40.0%
TGATGACAAAGAGGAAGATG+AGG + chr4.3:29756031-29756050 MS.gene031633:CDS 40.0%
TTGTGGAACTTTGCATCGTA+CGG + chr4.3:29757307-29757326 MS.gene031633:intron 40.0%
! CTCTTGGGGTCAGTAATTTT+TGG - chr4.3:29756188-29756207 None:intergenic 40.0%
! GAAGATTTTGTCTTGGGCTA+GGG - chr4.3:29756907-29756926 None:intergenic 40.0%
! TAGTACCTTTTGACCCTCTT+GGG - chr4.3:29756203-29756222 None:intergenic 40.0%
! TGAAGATTTTGTCTTGGGCT+AGG - chr4.3:29756908-29756927 None:intergenic 40.0%
! TGAAGCATTACTTGGTGAGA+TGG - chr4.3:29755703-29755722 None:intergenic 40.0%
!! CTCATCAAGAAGCATTGAAG+AGG + chr4.3:29757583-29757602 MS.gene031633:CDS 40.0%
!! CTTCATAGAAGCATCGATGA+TGG + chr4.3:29755827-29755846 MS.gene031633:CDS 40.0%
!!! GGTGAGATGGTTTTAAGGTT+AGG - chr4.3:29755690-29755709 None:intergenic 40.0%
AAGTATCAGTGCTGTCACCA+CGG + chr4.3:29756811-29756830 MS.gene031633:CDS 45.0%
CATTGAAGAGGGAGATAGAG+AGG + chr4.3:29757595-29757614 MS.gene031633:CDS 45.0%
CTGCACAAAGATCAAGAGTG+AGG + chr4.3:29756582-29756601 MS.gene031633:CDS 45.0%
GTCCATGTTTAGTGTAGACG+AGG + chr4.3:29755911-29755930 MS.gene031633:CDS 45.0%
TATGAAGGTCACTGAGTCAC+TGG - chr4.3:29755814-29755833 None:intergenic 45.0%
TCAACAAAACCCTTCATGGG+TGG + chr4.3:29755737-29755756 MS.gene031633:CDS 45.0%
TCACATCGTGGTTTAGGTGA+TGG - chr4.3:29757690-29757709 None:intergenic 45.0%
TGACAAAGAGGAAGATGAGG+AGG + chr4.3:29756034-29756053 MS.gene031633:CDS 45.0%
TGATCCAAATATGCAACCCG+TGG - chr4.3:29756831-29756850 None:intergenic 45.0%
TTAGTGTAGACGAGGTTTCG+AGG + chr4.3:29755919-29755938 MS.gene031633:CDS 45.0%
! AGTACCTTTTGACCCTCTTG+GGG - chr4.3:29756202-29756221 None:intergenic 45.0%
! GTAGTACCTTTTGACCCTCT+TGG - chr4.3:29756204-29756223 None:intergenic 45.0%
!! GGGGTCAGTAATTTTTGGAC+TGG - chr4.3:29756183-29756202 None:intergenic 45.0%
!!! AATTTAAAATAAATAAGTAA+AGG - chr4.3:29756413-29756432 None:intergenic 5.0%
!!! ATTTATTTTAAATTTTTTTC+TGG + chr4.3:29756419-29756438 MS.gene031633:intron 5.0%
ACATGAGCTAGCAGTGGTGA+TGG + chr4.3:29756460-29756479 MS.gene031633:intron 50.0%
ACTTCTCGTCCACCAGAAGA+GGG + chr4.3:29755772-29755791 MS.gene031633:CDS 50.0%
AGAAACTCGTCCACCCATGA+AGG - chr4.3:29755750-29755769 None:intergenic 50.0%
AGTATCAGTGCTGTCACCAC+GGG + chr4.3:29756812-29756831 MS.gene031633:CDS 50.0%
CTAGTTGCAGACACAGCACA+TGG - chr4.3:29757451-29757470 None:intergenic 50.0%
GAAACTCGTCCACCCATGAA+GGG - chr4.3:29755749-29755768 None:intergenic 50.0%
! AATGTAGCTGATGGTGCTGG+TGG - chr4.3:29755963-29755982 None:intergenic 50.0%
! GACAATGTAGCTGATGGTGC+TGG - chr4.3:29755966-29755985 None:intergenic 50.0%
! GTCACCACGGGTTGCATATT+TGG + chr4.3:29756824-29756843 MS.gene031633:CDS 50.0%
!! CGTGGTTTAGGTGATGGAGA+TGG - chr4.3:29757684-29757703 None:intergenic 50.0%
!! GATGGAGCATTGTCGTCGTA+GGG + chr4.3:29755845-29755864 MS.gene031633:CDS 50.0%
!! TGATGGAGCATTGTCGTCGT+AGG + chr4.3:29755844-29755863 MS.gene031633:CDS 50.0%
AGAGGGAGATAGAGAGGCTG+AGG + chr4.3:29757601-29757620 MS.gene031633:CDS 55.0%
CTGACCCCAAGAGGGTCAAA+AGG + chr4.3:29756195-29756214 MS.gene031633:CDS 55.0%
CTTCTCGTCCACCAGAAGAG+GGG + chr4.3:29755773-29755792 MS.gene031633:CDS 55.0%
GACTTCTCGTCCACCAGAAG+AGG + chr4.3:29755771-29755790 MS.gene031633:CDS 55.0%
! AAGAGGGGCACACAGACGTT+CGG + chr4.3:29755788-29755807 MS.gene031633:CDS 55.0%
! GAGCATTGTCGTCGTAGGGA+TGG + chr4.3:29755849-29755868 MS.gene031633:CDS 55.0%
ACGTCTGTGTGCCCCTCTTC+TGG - chr4.3:29755787-29755806 None:intergenic 60.0%
TCTGTGTGCCCCTCTTCTGG+TGG - chr4.3:29755784-29755803 None:intergenic 60.0%
!! GTAGCTGATGGTGCTGGTGG+TGG - chr4.3:29755960-29755979 None:intergenic 60.0%
!! TGGTGCTGGTGGTGGCATCA+TGG - chr4.3:29755952-29755971 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 29755684 29757752 29755684 ID=MS.gene031633
chr4.3 mRNA 29755684 29757752 29755684 ID=MS.gene031633.t1;Parent=MS.gene031633
chr4.3 exon 29755684 29756216 29755684 ID=MS.gene031633.t1.exon1;Parent=MS.gene031633.t1
chr4.3 CDS 29755684 29756216 29755684 ID=cds.MS.gene031633.t1;Parent=MS.gene031633.t1
chr4.3 exon 29756562 29756652 29756562 ID=MS.gene031633.t1.exon2;Parent=MS.gene031633.t1
chr4.3 CDS 29756562 29756652 29756562 ID=cds.MS.gene031633.t1;Parent=MS.gene031633.t1
chr4.3 exon 29756807 29756933 29756807 ID=MS.gene031633.t1.exon3;Parent=MS.gene031633.t1
chr4.3 CDS 29756807 29756933 29756807 ID=cds.MS.gene031633.t1;Parent=MS.gene031633.t1
chr4.3 exon 29757583 29757752 29757583 ID=MS.gene031633.t1.exon4;Parent=MS.gene031633.t1
chr4.3 CDS 29757583 29757752 29757583 ID=cds.MS.gene031633.t1;Parent=MS.gene031633.t1
Gene Sequence

>MS.gene031633

ATGCCTAACCTTAAAACCATCTCACCAAGTAATGCTTCAAACTTTTCCAACAATCAACAAAACCCTTCATGGGTGGACGAGTTTCTTGACTTCTCGTCCACCAGAAGAGGGGCACACAGACGTTCGGCCAGTGACTCAGTGACCTTCATAGAAGCATCGATGATGGAGCATTGTCGTCGTAGGGATGGAGACAATGAGTTTGAAAGGTTTGATGATGAACAATTGATGTCCATGTTTAGTGTAGACGAGGTTTCGAGGAATAATACCATGATGCCACCACCAGCACCATCAGCTACATTGTCATCTAACTCTAACCCTTCAACTCCTTCTGATCATAACAGCATCAATGATGACAAAGAGGAAGATGAGGAGGAAAAGATGCAACAGAAACAATTGAAGCATGAATCTGATGAGGATGAAATTGGTGAATGCAAACAGGAAAATGGAGGAGTTGTGAATGATGAAGATGACAATAATGGAAATACAACAACTTTTTCCAGTCCAAAAATTACTGACCCCAAGAGGGTCAAAAGGTACTACTCAAACATATTATTCATGTCACACAATTGTCACATTCCTAAAACCAAATATGTGTATTACATGGCTTCCTTAATTTGTAGTATTATCAATGTGTGAGCGAGACAATTTAATGTTAATTTGTGTATTATTAATTCTAGCTAGCTATGGAGAACATGTTCTTCATATATAAATATATACATCAGAAGACCTTTACTTATTTATTTTAAATTTTTTTCTGGTTTTATTTTCTGATTGAAACATGAGCTAGCAGTGGTGATGGTGATTATGTAAGAATATATTTCTGTTCCTTTTCATTCATGTGATGGTGATTGTAATTACTGTGTTTGCATATGTATCAGAATCTTAGCAAATAGACAATCTGCACAAAGATCAAGAGTGAGGAAACTGCAATACATATCAGAGCTTGAACGAAGTGTGACTTCATTACAGGTGAATTTAATAAACTTACATTGAACATGACATGATGGTAACTTAATTTTATACTAAGCATATACTATTAATAATTTGATGTGTATAGTAATTAATAATAATATTATGATTATATTTTGTTTTAACTTATTATATAATGTATTGATGAATGAAGGCTGAAGTATCAGTGCTGTCACCACGGGTTGCATATTTGGATCATCAGAGGTTGCTTCTAAATGTTGATAACAGTGCTATCAAGCAAAGAATCGCAGCCCTAGCCCAAGACAAAATCTTCAAAGATGGTATGCTACATCCTTAACATATTCTCATTTCACCTTTTACACTGTCATGTAGTATAAGTTTTCTGATTCATTAATTAATCACTGTTAAGATTTTGTTCTGTATATATATTGTTATTGATACGTGGTTTTATACTTTCAGTATGTCATGTTCAAGAGAAAGTTTAGACAGAATTATAGGAAGAAAGTACAATTTAGTTTATAGAGATGTACTTTTCAATTGTACCACTAACTAAGCTTGCAATTGCATCTCCTCAAAATTGTTTAATTATTTTTACTATAGGAGAGTTATTAAATATTAATTATTAATGAATGAAAAAACTATATAATAGGCTTATAAATGGAACAGAGGATAATAACGGAATTAGCTTCTTTTTTGTGGAACTTTGCATCGTACGGCACATGAGTTGAATCAGAGCAATTATTAGAGAAGAGGACAGATTGATATTGATTTTAGTAAAAGCACTTGCATGCAGTTGCACTGCACACATATTAAAATGCTGTATGTCTGAGATAACCATGTGCTGTGTCTGCAACTAGTAGTTATAGTCATTAAGATTACTACTAGTGGTACTACTTAAAAACCTTCAAAATAATACTTATAGATTGATTATTAATATTATACATGTTACAATGAATATTAATAATGCAGCTCATCAAGAAGCATTGAAGAGGGAGATAGAGAGGCTGAGGCAAGTGTATCACCAACAACAAAACATCAAGAACAATGCTACAGCAGCAGTAGTGTCACCATCTCCATCACCTAAACCACGATGTGATAATGATACTCACATTGAAAATGAACATCTTATCAATGTTTGA
Protein sequence

>MS.gene031633.t1

MPNLKTISPSNASNFSNNQQNPSWVDEFLDFSSTRRGAHRRSASDSVTFIEASMMEHCRRRDGDNEFERFDDEQLMSMFSVDEVSRNNTMMPPPAPSATLSSNSNPSTPSDHNSINDDKEEDEEEKMQQKQLKHESDEDEIGECKQENGGVVNDEDDNNGNTTTFSSPKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAYLDHQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQQNIKNNATAAVVSPSPSPKPRCDNDTHIENEHLINV